Citrus Sinensis ID: 004726
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 733 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZPI6 | 721 | Peroxisomal fatty acid be | yes | no | 0.961 | 0.977 | 0.756 | 0.0 | |
| Q8W1L6 | 726 | Peroxisomal fatty acid be | yes | no | 0.965 | 0.975 | 0.706 | 0.0 | |
| Q39659 | 725 | Glyoxysomal fatty acid be | N/A | no | 0.967 | 0.977 | 0.594 | 0.0 | |
| O49809 | 725 | Glyoxysomal fatty acid be | N/A | no | 0.961 | 0.972 | 0.594 | 0.0 | |
| Q9ZPI5 | 725 | Peroxisomal fatty acid be | no | no | 0.960 | 0.971 | 0.592 | 0.0 | |
| Q6NYL3 | 718 | Peroxisomal bifunctional | yes | no | 0.945 | 0.965 | 0.355 | 1e-109 | |
| Q08426 | 723 | Peroxisomal bifunctional | yes | no | 0.923 | 0.936 | 0.338 | 1e-105 | |
| Q5R5M8 | 723 | Peroxisomal bifunctional | yes | no | 0.919 | 0.932 | 0.338 | 1e-103 | |
| A8A2L0 | 714 | Fatty acid oxidation comp | yes | no | 0.927 | 0.952 | 0.332 | 1e-102 | |
| A4WCW6 | 715 | Fatty acid oxidation comp | yes | no | 0.927 | 0.951 | 0.325 | 3e-98 |
| >sp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/705 (75%), Positives = 624/705 (88%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A R+DVKAIVL GN GRFSGGF
Sbjct: 7 VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
DINVFQ+VH GD+SLMP+VSVELV NL+ED +KP+VAAVEGLALGGGLELAM CHAR+A
Sbjct: 67 DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
APK QLGLPELTLGVIPGFGGTQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V
Sbjct: 127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186
Query: 186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
++L SR WALDIA RKP+++SLHRTDK+GSLSEAR +LK +R AKK APNMPQH
Sbjct: 187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246
Query: 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct: 247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306
Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct: 307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366
Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
QDKA AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct: 367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM VGK IKKVPVV
Sbjct: 427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486
Query: 486 VGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545
VGNC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQL DLAG+G+ A
Sbjct: 487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLA 546
Query: 546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRR 605
+ K + DR F+SP+ +LLLKSGRNGK NG+G Y YEKGSKPKPDPSVL I+E+ R+
Sbjct: 547 VGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGYYIYEKGSKPKPDPSVLSIVEKSRK 606
Query: 606 LSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRG 665
L+NIMPGGKPISVT+KEIVEMILFPVVNE+CRVL+EG+V+RASDLD ASVLGMSFPSYRG
Sbjct: 607 LTNIMPGGKPISVTDKEIVEMILFPVVNEACRVLDEGVVIRASDLDIASVLGMSFPSYRG 666
Query: 666 GIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
GIVFWAD VG Y+Y LKK S+ YG+FFKPSR+LEERA G+ L
Sbjct: 667 GIVFWADTVGPKYIYERLKKLSETYGSFFKPSRYLEERAMNGMLL 711
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Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16). Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5 |
| >sp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/708 (70%), Positives = 600/708 (84%)
Query: 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
A RVTMEVG DGVA++T+ NPPVNAL I+ GLK+K+ EA RDDVKAIVLTG GG+F
Sbjct: 4 AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63
Query: 63 GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
GGFDINVF +VH G+VSLMPDVSVELV NL+E KKP VAA++GLALGGGLEL MGCHA
Sbjct: 64 GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123
Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
RI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct: 124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183
Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242
+ + +EL+K+SRLWAL+IA RKPWIRSL RTD+LGSLSEAR VL AR QAKK A N+P
Sbjct: 184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243
Query: 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 302
QHQACLDV+EEG++ GG++GVLKEAKVFKELV+ TS+ LVH FFAQR T+KVP VTD+
Sbjct: 244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303
Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
LKPR +RKVAVIGGGLMGSGIATA +++N VVLKEVN ++L +G K I AN+ GLV RG
Sbjct: 304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363
Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct: 364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423
Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 482
TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+TVGK+IKKV
Sbjct: 424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483
Query: 483 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
PVVVGNCTGFAVNR FFPY+Q + LLVS+G+DVFRID I SFG+P+GPFQL DLAGYGV
Sbjct: 484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGV 543
Query: 543 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEE 602
A A + AF R+ S LVDL++++GR GK+NGKG Y YEKG KPKPDPSV +I+E
Sbjct: 544 ALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLYEKGGKPKPDPSVQVVIDE 603
Query: 603 CRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPS 662
RR + MPGGKP+++++++I+EMI FPVVNE+CRV++E +V+RASDLD AS+LGM FP
Sbjct: 604 YRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFPK 663
Query: 663 YRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
+RGG+VFWAD +GA Y+++ L KW+++YG+FFKPS +LE+RA + +PL
Sbjct: 664 FRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKRSLPL 711
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Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q39659|MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/710 (59%), Positives = 548/710 (77%), Gaps = 1/710 (0%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
A R MEVG DGVAIIT+INPPVN+L+ ++ L+D +E+A RDDVKAIV+TG G+F
Sbjct: 5 AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64
Query: 62 SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
SGGFDI F + G G+ + ++S+E++ ++ E +KP VAA++GLALGGGLE+AM C
Sbjct: 65 SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARI+ P QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I +E LGL+
Sbjct: 125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V EEL+ +R WAL+I RR+PW+ SLHRTDKL SL+EAR++ LAR QAKK PN
Sbjct: 185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+ AC+D +E G+V G +G+ KEA+ F+ L+ DT + L+H+FFAQR+T+KVP VTD
Sbjct: 245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
+GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L GI + AN++ V
Sbjct: 305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
+G +T +K ++ +LKGVL+Y FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct: 365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDL ++GE+ S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+ VGK IK
Sbjct: 425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
K PVVVGNCTGFAVNR FFPYSQ+A LL GVD ++ID AI FG+P+GPF+L DL G+
Sbjct: 485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFRLCDLVGF 544
Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
GVAAAT+ +F +AFP+R+++S L+ L+ + G++ KG Y Y+K K P+P + I
Sbjct: 545 GVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGFYVYDKNRKAGPNPELKKYI 604
Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
E+ R S + K + EK+IVEMI FPVVNE+CRVL EGI V+A+DLD A V+GM F
Sbjct: 605 EKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAEGIAVKAADLDIAGVMGMGF 664
Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
PSYRGG++FWAD++G+NY+Y+ L++WS+ YG FFKP +L ERA +G L
Sbjct: 665 PSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLAERAVQGATL 714
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Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2 | Back alignment and function description |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/706 (59%), Positives = 541/706 (76%), Gaps = 1/706 (0%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
T+EVG DGVA+ITLINPPVN+L+ ++ LK +EEA SR+DVKAIV+TG G+FSGGF
Sbjct: 9 TTIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGF 68
Query: 66 DINVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
DI+ F ++ G + +S++++ +L+E KKP VAA++GLALGGGLEL+M CHARI
Sbjct: 69 DISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARI 128
Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
+AP QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG LGLIDAVV
Sbjct: 129 SAPGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVV 188
Query: 185 TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
ELL +R WALDIA RRKPW+ S+ +TDKL L EARE+LK A+ Q ++ APNM
Sbjct: 189 PPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHP 248
Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
CL+ +E GIV G +G+ KEA+V E++ LDT++GL+HVFF+QR T+KVP VTD GL
Sbjct: 249 LMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLV 308
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
PR + KVA+IGGGLMGSGIATA IL+N V+LKEVN ++L GI ++AN++ V +GK+
Sbjct: 309 PRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKM 368
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
+++K + +LKG LDY F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTS
Sbjct: 369 SKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
TIDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT TSAQVI+DL+ VGK I+K PV
Sbjct: 429 TIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPV 488
Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAA 544
VVGNCTGFAVNR FFPY+Q+A LV G D + ID A+ FG+P+GPF+L DL G+GVA
Sbjct: 489 VVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFRLCDLVGFGVAI 548
Query: 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECR 604
AT+ +F + FP+R+++S ++ L+ + R G+A KG Y Y+ K KPDP + I++ R
Sbjct: 549 ATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGFYLYDDRRKAKPDPEIKNYIDKAR 608
Query: 605 RLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYR 664
+S P K ++EKEI+EM FPVVNE+CRV EGI V+A+DLD A + GM FP YR
Sbjct: 609 SVSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIFGMGFPPYR 668
Query: 665 GGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
GGI+FWAD++G+ Y+Y+ L++WS+ YG FFKP FL ER +KG PL
Sbjct: 669 GGIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLAERGSKGAPL 714
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Brassica napus (taxid: 3708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/709 (59%), Positives = 540/709 (76%), Gaps = 5/709 (0%)
Query: 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
+ MEVG DGVA+ITLINPPVN+L+ ++ LK +EEA SR+DVKAIV+TG GRFSGG
Sbjct: 8 KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67
Query: 65 FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
FDI+ F ++ G+V P +S++++ +L+E +KP VAA++GLALGGGLELAM CH
Sbjct: 68 FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
ARI+AP QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
AVV EL+ +R WALDI RRKPW+ S+ +TDKL L EARE+L A+ Q K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245
Query: 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
CLD IE GIV G +G+ KEA+V ++V LDT++GL+HVFF+QR T+KVP VTD
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305
Query: 302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
GL PR ++KVA+IGGGLMGSGIATA IL+N V+LKEVN ++L GI ++AN++ V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365
Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
G ++Q+K + +LKG LDY F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT TSAQVI+DL+ VGK IKK
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485
Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
PVVVGNCTGFAVNR FFPY+Q+A LV G D + ID AI FG+P+GPF+L DL G+G
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545
Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIE 601
VA AT+ +F + F +R+++S ++ L+ + R G+A KG Y Y+ K KPDP + IE
Sbjct: 546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605
Query: 602 ECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 661
+ R +S + K +++EK+I+EM FPVVNE+CRV EGI V+A+DLD A ++GM FP
Sbjct: 606 KARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFP 665
Query: 662 SYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP FL ER +KG+ L
Sbjct: 666 PYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLL 714
|
Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6NYL3|ECHP_DANRE Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 262/738 (35%), Positives = 395/738 (53%), Gaps = 45/738 (6%)
Query: 9 EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
E+ VA+ITL NPPVNAL+ + + E A S V A+V+ G GRF GG DI
Sbjct: 5 ELVKRSVALITLTNPPVNALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIR 64
Query: 69 VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
F AG + P V + ++ IE +KP+VAA+EG+ALGGG ELA+ CH RIA K
Sbjct: 65 EF-----AGPLRGPPLVPL---LDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYK 116
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
+LGLPE+TLG++P GGTQRLPRL+G+ A+E++ + ++++E KLG++D V T +
Sbjct: 117 ARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQV-TEQN 175
Query: 189 LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA--REVLKLARLQAKKTAPNMPQHQA 246
+V+ +AL KP S R L + + + A +Q +K A + A
Sbjct: 176 TCEVALEFALKAVG--KPL--SSRRLSMLTTPCPPGLDGIFEAATMQVQKKARGVMAPLA 231
Query: 247 CLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK--VPNVTDIG- 302
C+ + + YS G+ +E ++ L ++ L + FFAQR K +P+
Sbjct: 232 CVQAVRAATLP--YSEGIKREGELMATLFSSGQAQALQYSFFAQRTAEKWTLPSGAQWNN 289
Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
KPR ++ AVIG G MG GI + L + + + V SE L ++T V G++ R
Sbjct: 290 SKPREIQSAAVIGLGTMGRGIVVS--LARVGISVIAVESEKKL--LETGRQMVIGMLER- 344
Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
+ + +L +LK L + KDVD+VIEAV E + LK++IF EL + C P +L +N
Sbjct: 345 DAKRRGVSASLNLLKFSLSLQDLKDVDLVIEAVFEDMALKKQIFRELSRVCRPATLLCSN 404
Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 482
TS +D++ + + T + G HFFSPAHVM LLE+V R+S + I M++GK + KV
Sbjct: 405 TSGLDVDALADVTDRPQLVAGMHFFSPAHVMKLLEVVCGPRSSKEAIATAMSLGKRMGKV 464
Query: 483 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 542
V VGNC GF NR PY + A L+ G +ID A+ FG +G F++ DLAG V
Sbjct: 465 SVAVGNCPGFVGNRMLMPYLEQATFLLEEGATPQQIDKALEDFGFAMGVFRMSDLAGLDV 524
Query: 543 AAATSKE-------FDKAFPDRSFQ----SPLVDLLLKSGRNGKANGKGLYTYEK--GSK 589
KE D P R Q P+ D++ + GR G+ G+G Y Y+K +
Sbjct: 525 GWRVRKESGLTGPDVDPKDPPRRRQGRKYCPIPDMVCQQGRFGQKTGRGWYMYDKPGDTN 584
Query: 590 PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASD 649
KPDP + ++E R I +P +T++EI+E LF + NE R+L++ I + D
Sbjct: 585 AKPDPLIQNLLETYRSRYGI----QPRKITDQEIIERCLFALANEGFRILKDKIAGQPED 640
Query: 650 LDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKG 707
+D + G FP +RGG +F+A VG V L+ + + +PS L++ +G
Sbjct: 641 IDVIYLFGYGFPRHRGGPMFYASMVGLERVLERLEYYHHALPDVPHLEPSPLLKKLVARG 700
Query: 708 IPLVRIIFHRFSNIFSFV 725
P ++ ++ S +
Sbjct: 701 SPPIQKWREHIKSMHSHL 718
|
Danio rerio (taxid: 7955) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q08426|ECHP_HUMAN Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3 | Back alignment and function description |
|---|
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 246/727 (33%), Positives = 392/727 (53%), Gaps = 50/727 (6%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
++ +A+I L NPPVNA++ ++ +K+ ++A +KAIV+ G G+FS G DI F
Sbjct: 8 HNALALIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFS 67
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
G +++ VV+ I+ +KP+VAA++G+A GGGLELA+GCH RIA + Q+
Sbjct: 68 APRTFG-------LTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQV 120
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 188
GLPE+TLG++PG GTQ LPRL G+ A++++ + I ++E KLG++D VV S EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVEE 180
Query: 189 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
++ + R+ + +RR KP I+SL D + SEA +LK+ R P
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDSI--FSEA--LLKMRRQH-----PGCLAQ 230
Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
+AC+ ++ + + G+ KE ++F L+ +R L + FFA+R +K + K
Sbjct: 231 EACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQARALQYAFFAERKANKWSTPSGASWK 290
Query: 305 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
R V V V+G G MG GI + I V+ + + L K I + + ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350
Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
+ + + L + E VD+VIEAV E + LK+++F+EL C P L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSV--KELGGVDLVIEAVFEEMSLKKQVFAELSAVCKPEAFLCT 408
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
NTS +D++ + T +IG HFFSPAHVM LLE++ ++ +S I +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468
Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
+ VVVGNC GF NR PY A L+ G +D + FG +GPF++ DLAG
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLD 528
Query: 542 VAAATSKEFDKAFP------------DRSFQSPLVDLLLKSGRNGKANGKGLYTYEK--G 587
V + K P +R + P+ D+L + GR G+ GKG Y Y+K G
Sbjct: 529 VGWKSRKGQGLTGPTLLPGTPARKRGNRRY-CPIPDVLCELGRFGQKTGKGWYQYDKPLG 587
Query: 588 SKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRA 647
KPDP + + R+ +I +P ++++ EI+E L+ ++NE+ R+L EGI
Sbjct: 588 RIHKPDPWLSKFLSRYRKTHHI----EPRTISQDEILERCLYSLINEAFRILGEGIAASP 643
Query: 648 SDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERAT 705
+D + G +P ++GG +F+A VG V L+K+ + + +PS +L++ A+
Sbjct: 644 EHIDVVYLHGYGWPRHKGGPMFYASTVGLPTVLEKLQKYYRQNPDIPQLEPSDYLKKLAS 703
Query: 706 KGIPLVR 712
+G P ++
Sbjct: 704 QGNPPLK 710
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5R5M8|ECHP_PONAB Peroxisomal bifunctional enzyme OS=Pongo abelii GN=EHHADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust.
Identities = 245/724 (33%), Positives = 388/724 (53%), Gaps = 50/724 (6%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
++ +A+I L NPPVNA++ ++ +K+ ++A +KAIV+ G G+FS G DI+ F
Sbjct: 8 HNALALIRLRNPPVNAISTALLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIHGFS 67
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
G ++ VV+ I+ +KP+VAA++G+A GGGLELA+GCH RIA + Q+
Sbjct: 68 APRTFG-------FTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHSEAQV 120
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 188
GLPE+TLG++PG GTQ LPRL+G+ A++++ + I ++E KLG++D VV S EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLIGVPAALDLITSGRHILADEALKLGILDKVVNSDPVEE 180
Query: 189 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
++ + R+ + +RR KP I+SL D + SEA +LK+ R P
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDTI--FSEA--LLKMRRQH-----PGCLAQ 230
Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
+AC+ ++ + + GV KE ++F L +R L + F A+R +K + K
Sbjct: 231 EACVRAVQAAVQYPYEVGVKKEEELFLYLFQSGQARALQYAFLAERKANKWSTPSGASWK 290
Query: 305 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
R V V V+G G MG GI + I V+ + + L K I + + ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350
Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
+ + + L + E VD+VIEAV E + LK+++F+EL C P L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSM--KELGGVDLVIEAVFEEMSLKKQVFAELSAICKPEAFLCT 408
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
NTS +D++ + T +IG HFFSPAHVM LLE++ ++ +S I +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468
Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541
+ VVVGNC GF NR PY A L+ G +D + FG +GPF++ DLAG
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLD 528
Query: 542 VAAATSKEFDKAFP------------DRSFQSPLVDLLLKSGRNGKANGKGLYTYEK--G 587
V + K P +R + P+ D+L + GR G+ GKG Y Y+K G
Sbjct: 529 VGWKSRKGQGLTGPTLPPGTPARKRGNRRY-CPIPDVLCELGRFGQKTGKGWYQYDKPLG 587
Query: 588 SKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRA 647
K DP + + + R +I +P ++++ EI+E L+ ++NE+ R+L EGI
Sbjct: 588 RIHKADPWLSKFLSQYRETHHI----EPRTISQDEILERCLYSLINEAFRILGEGIAASP 643
Query: 648 SDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERAT 705
+D + G +P ++GG +F+A VG V L+K+ + + +PS +L++ A+
Sbjct: 644 EHIDVVYLHGYGWPRHKGGPMFYASTVGLPTVLEKLQKYYRQNPDIPQLEPSDYLKKLAS 703
Query: 706 KGIP 709
+G P
Sbjct: 704 QGNP 707
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 238/716 (33%), Positives = 374/716 (52%), Gaps = 36/716 (5%)
Query: 7 TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
T+ V D +AIIT+ P +N L + ++ ++ +++ +V ++ F
Sbjct: 8 TLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIA 67
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
G DIN+ A + + +L+ I P++AA+ G LGGGLELA+ CH R
Sbjct: 68 GADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGR 126
Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
+ PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L K + +++ KLGL+D
Sbjct: 127 VCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVD 186
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 239
VV LL+ A+++A + +P R L +++ G L A + + KT
Sbjct: 187 DVVPHSILLEA----AVELAKKDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEHKTQG 242
Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
N P + L+V+E G+ G SG EA+ F EL M S+ L +FFA K P
Sbjct: 243 NYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQSQALRSIFFASTDVKKDPGSD 302
Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGL 358
P + V ++GGGLMG+GIA + V +K++N + + +K + G
Sbjct: 303 ---APPAPLNSVGILGGGLMGAGIAYVTACKAGLPVRIKDINPQGINHALKYSWDQLEGK 359
Query: 359 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 418
V R L + + L ++ G DY F D++IEAV E++ LKQ++ +E+E+ C H I
Sbjct: 360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTI 419
Query: 419 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478
A+NTS++ + + + +++IG HFFSP MPL+EI+ TSAQ I + + K
Sbjct: 420 FASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKK 479
Query: 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLA 538
K P+VV + GF VNR PY A +++ G V ID+A+ FG P+GP QLLD
Sbjct: 480 QGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEV 539
Query: 539 GYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSKPKP--D 593
G + A+ +R F +P +V +L R G+ NG+G Y Y +KG K K D
Sbjct: 540 GIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRKSKKQVD 598
Query: 594 PSVLPII--EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLD 651
P++ P+I + RLS ++ E + ++NE+ R ++E ++ D D
Sbjct: 599 PAIYPLIGAQGQGRLS------------APQVAERCVMLMLNEAVRCVDEQVIRSVRDGD 646
Query: 652 DASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
+V G+ FP + GG + D++GA V +++ + YG+ F P L E +G
Sbjct: 647 IGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLATQYGSRFTPCERLVEMGARG 702
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Escherichia coli O9:H4 (strain HS) (taxid: 331112) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|A4WCW6|FADJ_ENT38 Fatty acid oxidation complex subunit alpha OS=Enterobacter sp. (strain 638) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 231/710 (32%), Positives = 371/710 (52%), Gaps = 30/710 (4%)
Query: 7 TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
T+ V D +A++T+ P +N L ++ ++ +++ ++ ++ F
Sbjct: 8 TLNVRLDNIAVVTIDVPGEKMNTLKAEFGVQVRSILKQVRDNKNIRGLIFISAKSDNFIA 67
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
G DIN+ + A + + +++ I P++AA+ G LGGGLELA+ CH+R
Sbjct: 68 GADINMIARAKSAQEAEELARQGQQIMAE-IHGLSIPVIAAIHGACLGGGLELALACHSR 126
Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
+ KT LGLPE+ LG++PG GGTQRLPRLVG+S A+EM+L K + + K+GL+D
Sbjct: 127 VCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILTGKQLRPRQALKVGLVD 186
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 239
VV LL A+++A + + R L +++ G L A ++ + +KT
Sbjct: 187 EVVPHSILLTA----AVELAQKERQASRHLPVRERILAGPLGRALLFNRVGKKTEQKTKG 242
Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
N P + LDVIE G+ G SG EAK F EL M S+ L +FFA K P +
Sbjct: 243 NYPATKRILDVIETGLSQGSSSGYAAEAKAFGELAMTPQSQALRSIFFASTEVKKDPG-S 301
Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 359
++ P V G G TA + V +K++N++ + ++ + V
Sbjct: 302 EVAPGPLNAIGVLGGGLMGGGISFVTAS-KGKLPVRIKDINAKGINHALQYSWQLLDQKV 360
Query: 360 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419
R + + + AL ++ G +D+S FK D+VIEAV E + LKQ++ +++E+ C PH I
Sbjct: 361 KRRHIKASERDRALALISGTIDFSGFKHRDVVIEAVFEDLQLKQQMVADVEQYCAPHTIF 420
Query: 420 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479
A+NTS++ + + + +++IG HFFSP MPL+E++ E TSAQ + ++ + K
Sbjct: 421 ASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHESTSAQTVATVVKLAKRQ 480
Query: 480 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAG 539
K P+VV + GF VNR PY A L++ G V +D A+ FG P+GP QLLD G
Sbjct: 481 GKTPIVVADKAGFYVNRILAPYINEAMRLLTEGEKVENVDDALVKFGFPVGPIQLLDEVG 540
Query: 540 YGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTYE---KGSKPKPDP 594
+ A+ +R F P +V +L R G+ NG+G Y Y + SK + DP
Sbjct: 541 IDTGTKIIPVLEAAYGER-FSPPANVVSAILNDDRKGRKNGRGFYLYAAKGRKSKKQVDP 599
Query: 595 SVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDAS 654
SV +I N GK +T ++ E + ++NE+ R +E ++ A D D +
Sbjct: 600 SVYGLI-------NASGQGK---LTAQQCAERCVMMMLNEAARCFDEKVIKNARDGDIGA 649
Query: 655 VLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 704
V G+ FP + GG + D++GA V +L++ + LYG+ F P L++ A
Sbjct: 650 VFGIGFPPFLGGPFRYMDSLGAGEVVATLQRLASLYGSRFTPCETLKQMA 699
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Enterobacter sp. (strain 638) (taxid: 399742) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 733 | ||||||
| 224142159 | 726 | predicted protein [Populus trichocarpa] | 0.972 | 0.982 | 0.835 | 0.0 | |
| 225445200 | 724 | PREDICTED: peroxisomal fatty acid beta-o | 0.968 | 0.980 | 0.8 | 0.0 | |
| 406365505 | 724 | cinnamoyl-CoA hydratase-dehydrogenase [P | 0.965 | 0.977 | 0.813 | 0.0 | |
| 255546439 | 724 | 3-hydroxyacyl-CoA dehyrogenase, putative | 0.968 | 0.980 | 0.805 | 0.0 | |
| 315419009 | 721 | MFP [Gossypium hirsutum] | 0.963 | 0.979 | 0.817 | 0.0 | |
| 356520511 | 724 | PREDICTED: peroxisomal fatty acid beta-o | 0.968 | 0.980 | 0.795 | 0.0 | |
| 357500631 | 722 | Peroxisomal fatty acid beta-oxidation mu | 0.965 | 0.980 | 0.794 | 0.0 | |
| 449443155 | 724 | PREDICTED: peroxisomal fatty acid beta-o | 0.974 | 0.986 | 0.760 | 0.0 | |
| 356531273 | 724 | PREDICTED: peroxisomal fatty acid beta-o | 0.968 | 0.980 | 0.787 | 0.0 | |
| 449515444 | 719 | PREDICTED: peroxisomal fatty acid beta-o | 0.967 | 0.986 | 0.754 | 0.0 |
| >gi|224142159|ref|XP_002324426.1| predicted protein [Populus trichocarpa] gi|222865860|gb|EEF02991.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1215 bits (3144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/713 (83%), Positives = 657/713 (92%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P VTMEVGNDGVA++TLINPPVNALAIPI+AGLK+KF+EAT R+DVKA+VLTG GGR
Sbjct: 1 MAKPHVTMEVGNDGVAVVTLINPPVNALAIPIIAGLKEKFDEATRRNDVKALVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVFQKVH GD+SLMPDVSVELVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61 FSGGFDINVFQKVHATGDISLMPDVSVELVVNTIEDCKKPVVAAVEGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL+GLSKAIE+MLLSK I SEEG KLGLI
Sbjct: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLLGLSKAIEIMLLSKPIMSEEGKKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V S+ELLKVSR WALDI+ RRKPW+RSLHRTDK+GSLSEAREVLK AR QAKK APN
Sbjct: 181 DAIVPSQELLKVSRQWALDISERRKPWLRSLHRTDKIGSLSEAREVLKAARQQAKKIAPN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQHQA LDV+EEGI+HGGY+GVLKEAKVFKELV+ +TS+GLVHVFFAQR TSK+P VTD
Sbjct: 241 VPQHQALLDVMEEGIIHGGYNGVLKEAKVFKELVLTETSKGLVHVFFAQRMTSKIPKVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
+GLKPR ++KVAVIGGGLMGSGIATA I++NI+VVLKE+NSEYL KG KTIEANVR LVT
Sbjct: 301 VGLKPRHIKKVAVIGGGLMGSGIATALIVSNIHVVLKEINSEYLQKGTKTIEANVRSLVT 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
RGKLT+DKA+ AL MLKG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RGKLTRDKADKALSMLKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKICPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAH+MPLLEIVRTE+TSAQ ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHIMPLLEIVRTEKTSAQAILDLMTVGKTIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
KVPVVVGNCTGFAVNRAFFPY+QSA +LV LGVDVFRID I SFGLP+GP+QL DL+GY
Sbjct: 481 KVPVVVGNCTGFAVNRAFFPYTQSALILVHLGVDVFRIDKLISSFGLPMGPYQLQDLSGY 540
Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
GVA A KEF AFPDR+FQSPL+ LL+KSGRNGK NGKG Y YEKGSKP+PDPSVLPII
Sbjct: 541 GVALAVEKEFANAFPDRTFQSPLIHLLVKSGRNGKTNGKGYYIYEKGSKPRPDPSVLPII 600
Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
EE RRL+NIMP GKPI++T+KEIVEM+LFPVVNE+CRVL+EG+VVRASDLD ASVLGMSF
Sbjct: 601 EESRRLANIMPNGKPINITDKEIVEMVLFPVVNEACRVLDEGVVVRASDLDTASVLGMSF 660
Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLVRI 713
PSYRGGIVFWAD VG +VY SLKKWSQ +G+F+KPS+FLEERAT GIPL R+
Sbjct: 661 PSYRGGIVFWADLVGPKHVYDSLKKWSQRFGDFYKPSKFLEERATGGIPLFRV 713
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445200|ref|XP_002284283.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Vitis vinifera] gi|297738804|emb|CBI28049.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1191 bits (3080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/710 (80%), Positives = 641/710 (90%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
M+ VTMEVGNDGVA+IT+ NPPVNALA+ I+AGLK+K+ EA R+DVKAIV+TG GGR
Sbjct: 1 MSKAEVTMEVGNDGVAVITMSNPPVNALALAIIAGLKEKYAEAMRRNDVKAIVVTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVFQKVH D+S +PD S++L+VN +ED KKP VAAVEGLALGGGLE+AM C
Sbjct: 61 FSGGFDINVFQKVHKTADISHLPDASIDLLVNTVEDAKKPSVAAVEGLALGGGLEVAMAC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIAAPKTQLGLPEL+LGV+PGFGGTQRLPRLVGLSKAIEMM LSKSI+SEEG+KLGL+
Sbjct: 121 HARIAAPKTQLGLPELSLGVMPGFGGTQRLPRLVGLSKAIEMMRLSKSISSEEGYKLGLV 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V+SEELLKVSR WALDI +RKPW+RSLH+T+KLGS+SEA ++LK++R QA+KT P+
Sbjct: 181 DAIVSSEELLKVSRRWALDIVDKRKPWVRSLHQTEKLGSVSEALDILKISRQQARKTVPH 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQHQACLDVIEEGIVHGGYSG+LKE KVF +LV+ DT++GL+HVFFAQRATSKVPNVTD
Sbjct: 241 LPQHQACLDVIEEGIVHGGYSGLLKETKVFNKLVLSDTAKGLIHVFFAQRATSKVPNVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR V+KVAVIGGGLMGSGIATA I +NIYVVLKEVNSEYLLKGIKTIEANVRGLVT
Sbjct: 301 IGLKPRNVKKVAVIGGGLMGSGIATALITSNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
+GKLTQDKA AL MLKGVLDYSEFKD+DMVIEAVIE++ LKQKIFSE+EK C PHCILA
Sbjct: 361 KGKLTQDKARKALSMLKGVLDYSEFKDIDMVIEAVIENISLKQKIFSEIEKICSPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAHVMPLLE+VRTE+TSAQVILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHVMPLLEVVRTEKTSAQVILDLMTVGKAIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
K+PVVVG+CTGFAVNR FFPY+Q A LV+LGVD FRID I +FGLP+GPFQL DL+GY
Sbjct: 481 KIPVVVGSCTGFAVNRTFFPYAQGAHFLVNLGVDPFRIDWVISNFGLPMGPFQLQDLSGY 540
Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
GVA A KEF AF R+F+SPLV+LLLK+GRNGK NGKG Y YEKGSKP+PDPSVLPII
Sbjct: 541 GVAVAVGKEFATAFQGRTFESPLVNLLLKNGRNGKQNGKGYYIYEKGSKPRPDPSVLPII 600
Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
EE RRL+NIMPGGKPISV +EI+EMILFPVVNE+CRVL+EG+VVRASDLD SVLGMSF
Sbjct: 601 EESRRLANIMPGGKPISVANQEILEMILFPVVNEACRVLDEGVVVRASDLDITSVLGMSF 660
Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
PSYRGGIVFWAD VG Y+YT LKKWS +YG FFKPS +LE+RATKGIPL
Sbjct: 661 PSYRGGIVFWADEVGPYYIYTCLKKWSAMYGTFFKPSSYLEQRATKGIPL 710
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|406365505|gb|AFS41246.1| cinnamoyl-CoA hydratase-dehydrogenase [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/708 (81%), Positives = 638/708 (90%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA +VTMEVG DGVA+IT+ NPPVNALAIPI+ LK+K+ EAT R+DVKAIVLTGNGGR
Sbjct: 1 MAQVKVTMEVGTDGVAVITIFNPPVNALAIPIINALKEKWTEATIRNDVKAIVLTGNGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVFQKVHG GD+S MPDVSV+LVVN +EDCKKP VAA+EGLALGGGLELAMGC
Sbjct: 61 FSGGFDINVFQKVHGTGDISQMPDVSVDLVVNTMEDCKKPAVAAIEGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIAAP+ QLGLPEL+LGV+PGFGGTQRLPRL+GLSKA+EMM+ SK I SEEG KLGLI
Sbjct: 121 HARIAAPRAQLGLPELSLGVMPGFGGTQRLPRLIGLSKAVEMMMTSKPIMSEEGKKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V S ELLKVSR WALDIA RRKPW+RSLH+TDK+GSLSEAREVLK+AR Q K+TA N
Sbjct: 181 DAIVPSSELLKVSRQWALDIAERRKPWMRSLHKTDKIGSLSEAREVLKVARQQVKQTAKN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
MPQH AC+DVIEEGI+HGGY+GVLKEAKVFK+LV+ +TS+GLVHVFFAQRATSKVPNVTD
Sbjct: 241 MPQHVACIDVIEEGIIHGGYAGVLKEAKVFKDLVLSETSKGLVHVFFAQRATSKVPNVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR V+KVAVIGGGLMGSGIATA L+N +VVLKE+NSEYL KG+K IEANVRGLV
Sbjct: 301 IGLKPRTVKKVAVIGGGLMGSGIATALALSNTFVVLKEINSEYLQKGMKAIEANVRGLVA 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
R KL QDKA+ AL M+KG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RKKLPQDKADKALSMVKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKVCPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
+NTSTIDLNI+GE T S+DRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDLM VGK IK
Sbjct: 421 SNTSTIDLNIIGENTRSKDRIIGAHFFSPAHIMPLLEIVRTEKTSTQAILDLMAVGKAIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
KVPVVVGNCTGFAVNR FFPYSQ A +LV+LGVD +RID+ I SFGLP+GP QL DL GY
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYSQGAHILVNLGVDAYRIDAQITSFGLPMGPLQLQDLTGY 540
Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
GVA A KEF AF DR+F+SPL+DLL+KSGRNGK NGKG Y YEKGSKP+PD SVLPII
Sbjct: 541 GVAVAVGKEFGSAFSDRTFKSPLIDLLIKSGRNGKNNGKGFYIYEKGSKPRPDLSVLPII 600
Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
EE RRL+NIMPGGKPISVT++EIVEMILFPVVNE+CRVL+EGIVVRASDLD ASVLGMSF
Sbjct: 601 EESRRLTNIMPGGKPISVTDQEIVEMILFPVVNEACRVLDEGIVVRASDLDVASVLGMSF 660
Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 708
PSYRGGIVFWAD VGA ++Y SL KWS+LYGNFFKPSRFLEERATKGI
Sbjct: 661 PSYRGGIVFWADTVGAGHIYKSLTKWSELYGNFFKPSRFLEERATKGI 708
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546439|ref|XP_002514279.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis] gi|223546735|gb|EEF48233.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/710 (80%), Positives = 639/710 (90%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P VTMEVGNDGVA+I++ NPPVNALA+PI+ GLK+KF EA R DV+AIVLTG GR
Sbjct: 1 MAKPHVTMEVGNDGVAVISMSNPPVNALAVPIIMGLKEKFTEAARRKDVQAIVLTGKNGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDI+V QKVH GD S++PDVSV+LVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61 FSGGFDISVMQKVHQTGDASILPDVSVDLVVNAIEDCKKPVVAAVEGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARI APKTQLGLPEL+LG+IPGFGGTQRLPRLVGL KAI+MML SK I SEEG KLGL+
Sbjct: 121 HARIVAPKTQLGLPELSLGIIPGFGGTQRLPRLVGLPKAIQMMLTSKPIMSEEGKKLGLV 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
D +V+S+ELLKVSR WALDI RRKPW+RSLH TDKLGSLSEA E+LK AR QAKKTAPN
Sbjct: 181 DVIVSSQELLKVSRQWALDIKERRKPWMRSLHMTDKLGSLSEALELLKAARQQAKKTAPN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
MPQHQACLDVIE+G+VHGGYSGVLKEAKVFKELV+ DT++ L+HVFFAQR TSKVPNV+D
Sbjct: 241 MPQHQACLDVIEDGVVHGGYSGVLKEAKVFKELVISDTAKSLIHVFFAQRTTSKVPNVSD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR ++KVAVIGGGLMGSGI TA I + IYVVLKE+NSEYLLKGIK +EANVRGLVT
Sbjct: 301 IGLKPRQIKKVAVIGGGLMGSGIITALITSGIYVVLKEINSEYLLKGIKMVEANVRGLVT 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
RGKL+ DKA+ AL MLKGVLDYS+F+DVDMVIEAVIES+PLKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKLSPDKADKALSMLKGVLDYSDFRDVDMVIEAVIESIPLKQKIFSEIEKACPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN+VG+KTS+QD IIGAHFFSPAH+MPLLEIVRT++TS Q ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGKKTSAQDCIIGAHFFSPAHIMPLLEIVRTDKTSPQAILDLMTVGKSIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
KV VVVGNCTGFAVNR FFPY+Q A LLV+LGVDVFRID I +FGLP+GP QL DLAGY
Sbjct: 481 KVSVVVGNCTGFAVNRTFFPYAQGAHLLVNLGVDVFRIDRVICNFGLPMGPLQLQDLAGY 540
Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
GVA A KEF AFPDR+F+SPLVDLL+KSGRNGK NGKG Y YEKGSKPKPDPSV+PII
Sbjct: 541 GVAVAVGKEFATAFPDRTFKSPLVDLLIKSGRNGKNNGKGYYIYEKGSKPKPDPSVIPII 600
Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
+E +RL+NIMP GKPIS++++EIVEMI FP+VNE+CRVLEEG+VVRASDLD ASVLGMSF
Sbjct: 601 QESQRLTNIMPNGKPISISDQEIVEMIFFPIVNEACRVLEEGVVVRASDLDIASVLGMSF 660
Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
PSYRGGIVFWAD VG ++YTSLKKWS LYGNF+KPSRFLEERA KG+PL
Sbjct: 661 PSYRGGIVFWADTVGPKHIYTSLKKWSLLYGNFYKPSRFLEERALKGMPL 710
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|315419009|gb|ADU15551.1| MFP [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/711 (81%), Positives = 644/711 (90%), Gaps = 5/711 (0%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
M+ +VTMEVGNDGVA+IT+ NPPVNALAIPI+ GLK+KF EAT RDDVKAIVLTG GGR
Sbjct: 1 MSQSKVTMEVGNDGVAVITISNPPVNALAIPIIDGLKEKFAEATRRDDVKAIVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVF KVHG GDVS+MPDVSV+LV N +EDCKKPIVAAVEGLALGGGLE AMGC
Sbjct: 61 FSGGFDINVFTKVHGTGDVSIMPDVSVDLVTNAVEDCKKPIVAAVEGLALGGGLEFAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIAAP+TQLGLPEL+LGVIPGFGGTQRLPRLVGLSKAIEMML SK I SEEG KLGLI
Sbjct: 121 HARIAAPRTQLGLPELSLGVIPGFGGTQRLPRLVGLSKAIEMMLSSKPIMSEEGKKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V S+ELLKVS WALD+A RRKPW+RSLHRTDK+GSLSEAREVL++ARLQAKKTAPN
Sbjct: 181 DALVPSKELLKVSCAWALDMAERRKPWLRSLHRTDKIGSLSEAREVLRMARLQAKKTAPN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQHQ CLDVIEEGIVHGGYSGVLKEAKVFKE+V+ DTSRGLVHVF AQRATSKVPNVTD
Sbjct: 241 LPQHQVCLDVIEEGIVHGGYSGVLKEAKVFKEIVLSDTSRGLVHVFLAQRATSKVPNVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
+GLKPR V+KVA+IGGGLMGSGIATA I+NNI+VVLKEVNSEYLLKGIKT+EANVRGL
Sbjct: 301 VGLKPRQVKKVAIIGGGLMGSGIATALIVNNIFVVLKEVNSEYLLKGIKTVEANVRGLAN 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
RGK+T+DKA AL MLKGVLDYSEFKDVDMVIEAV+E+V LKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKMTKDKAEKALSMLKGVLDYSEFKDVDMVIEAVVENVALKQKIFSEIEKACPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN++GEK +SQDR++GAHFFSPAH+MPLLE VRT++ S Q+ILDLMTVGK+IK
Sbjct: 421 TNTSTIDLNLIGEKMNSQDRLVGAHFFSPAHLMPLLETVRTQKASPQIILDLMTVGKVIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAG 539
KVPVVVGNCTGFAVNR FFPY+Q LLVSLGV D +RID I +FG P+GPFQL DLAG
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYTQGPHLLVSLGVDDAYRIDRVICNFGFPLGPFQLQDLAG 540
Query: 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPI 599
YGVA A +E+ KAF DR F+SPL++LL K GRNGK NGKG Y YEKGSKPKPDPSVL I
Sbjct: 541 YGVAFAVGQEYAKAFSDRIFKSPLLELLAKDGRNGKNNGKGYYIYEKGSKPKPDPSVLSI 600
Query: 600 IEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 659
IEE RRL+NIMPGGKPISVT++E++EMILFPVVNE+CRVL+EG+VVRASDLD ASVLGMS
Sbjct: 601 IEESRRLTNIMPGGKPISVTDREVLEMILFPVVNEACRVLDEGVVVRASDLDVASVLGMS 660
Query: 660 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
FPSYRGGIVFWAD VGAN+VY +LKKWS GN +KPS+FLEERA KGIPL
Sbjct: 661 FPSYRGGIVFWADMVGANHVYRNLKKWS---GN-YKPSKFLEERAMKGIPL 707
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520511|ref|XP_003528905.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1148 bits (2970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/710 (79%), Positives = 636/710 (89%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P+V EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA R+DVKAIVLTG GGR
Sbjct: 1 MALPKVDFEVGTDGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDI+V QKVH GD S +PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61 FSGGFDISVMQKVHQTGDSSHLPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HAR+AAP+ QLGLPELTLG+IPGFGGTQRLPRL+GLSKA+EMML SK ITSEEG K GLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKFGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V+SEELLK SRLWAL+I RRKPWIRSLHRTDK+GSLSEAR VLK AR Q KKTAP+
Sbjct: 181 DAIVSSEELLKASRLWALEIGERRKPWIRSLHRTDKIGSLSEARAVLKTARQQVKKTAPH 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQ QAC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DTS+GL++VFFAQRA SKVP VTD
Sbjct: 241 LPQQQACVDVIEHGIVHGGYSGVLKEAEVFKQLVISDTSKGLINVFFAQRAISKVPGVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR V+K AVIGGGLMGSGIATA IL NI V+LKE+NSE+LLKGIKTIEANV GLV
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIRVILKEINSEFLLKGIKTIEANVNGLVR 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
RGKLT+ KA+ AL +LKGVLDYSEFKDVD+VIEAVIE++ LKQ IF +LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLKGVLDYSEFKDVDLVIEAVIENISLKQTIFGDLEKICPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
+NTSTIDL++VG+ TSSQDRI GAHFFSPAH+MPLLEI+RT++TSAQVI+DL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQDRIAGAHFFSPAHIMPLLEIIRTDKTSAQVIVDLITVGKIIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID I +FG PIGPFQL DLAGY
Sbjct: 481 KAPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDRLICNFGFPIGPFQLQDLAGY 540
Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
GVA ATSK F AF DR F+SPL+DLL+KSGRNGK NGKG Y YEKG KPKPDPS+LPII
Sbjct: 541 GVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIYEKGGKPKPDPSILPII 600
Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
EE RRL NIMP GKPIS+T++EIVEMILFPVVNE+CRVLE+G+V+RASDLD ASVLGMSF
Sbjct: 601 EESRRLCNIMPNGKPISITDQEIVEMILFPVVNEACRVLEDGVVIRASDLDIASVLGMSF 660
Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
P+YRGGIVFWAD VGAN+++TSLKKW+QLYGNF+KPSR+LEERA KGIPL
Sbjct: 661 PNYRGGIVFWADLVGANHIFTSLKKWAQLYGNFYKPSRYLEERALKGIPL 710
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357500631|ref|XP_003620604.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula] gi|355495619|gb|AES76822.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/710 (79%), Positives = 632/710 (89%), Gaps = 2/710 (0%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA+ +V EVGNDGVA+IT+ NPPVNALAIPI+ GLK+KFEEA R+DVKAIVLTG GGR
Sbjct: 1 MASVKVDFEVGNDGVAVITMCNPPVNALAIPIIRGLKNKFEEAARRNDVKAIVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDI+V QKVH GD++L+PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61 FSGGFDISVMQKVHQTGDITLVPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HAR+AAPK QLGLPELTLG+IPGFGGTQRLPRLVG SKA+EMML SK IT+EEG KLGLI
Sbjct: 121 HARVAAPKAQLGLPELTLGIIPGFGGTQRLPRLVGTSKAVEMMLTSKPITAEEGQKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V+ ELLK+SR WAL+IA +R+PWIRSLH TDKLGS +AREVL+ AR KKTAP+
Sbjct: 181 DAIVSPAELLKLSRQWALEIAEQRRPWIRSLHITDKLGS--DAREVLRTARQHVKKTAPH 238
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQ QAC+DVIE GI+HGGYSGVL+EA+VFK+LV+ +T++GL+HVFFAQR SK+P VTD
Sbjct: 239 LPQQQACIDVIEHGILHGGYSGVLREAEVFKKLVLSETAKGLIHVFFAQRTISKIPGVTD 298
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR VRK AVIGGGLMGSGIATA IL NI V+LKEVNSEYL KGIKTIEANVRGLVT
Sbjct: 299 IGLKPRNVRKAAVIGGGLMGSGIATALILGNIRVILKEVNSEYLQKGIKTIEANVRGLVT 358
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
R KLTQ KA AL +LKGVLDY+EFKDVDMVIEAVIE V LKQ IFS+LEK CPPHCILA
Sbjct: 359 RKKLTQQKAEGALSLLKGVLDYAEFKDVDMVIEAVIEKVSLKQDIFSDLEKICPPHCILA 418
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
+NTSTIDLNI+GEK SSQDR+IGAHFFSPAH+MPLLEIVRT +TSAQVILDL+TVGKIIK
Sbjct: 419 SNTSTIDLNIIGEKISSQDRVIGAHFFSPAHIMPLLEIVRTNKTSAQVILDLVTVGKIIK 478
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
K PVVVGNCTGFAVNR FFPY+Q A L +LGVDVFRID I +FGLP+GPFQL DL+GY
Sbjct: 479 KSPVVVGNCTGFAVNRTFFPYAQGAHFLANLGVDVFRIDRLISNFGLPMGPFQLQDLSGY 538
Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
GVA A KEF +F R+F +PL+DLL+KSGRNGK NGKG Y YEKGSKPKPDPSVLPI+
Sbjct: 539 GVAVAVGKEFAGSFAGRTFPTPLLDLLIKSGRNGKNNGKGYYIYEKGSKPKPDPSVLPIV 598
Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
EE RRLSNIMP GKPIS+T++EIVEMILFPVVNE+CRVLEEGIV+RASDLD ASVLGMSF
Sbjct: 599 EESRRLSNIMPNGKPISITDQEIVEMILFPVVNEACRVLEEGIVIRASDLDIASVLGMSF 658
Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
PSYRGGIVFWAD VGA ++Y+SLKKWSQLYGNF+KPSR+LEERATKGIPL
Sbjct: 659 PSYRGGIVFWADLVGAKHIYSSLKKWSQLYGNFYKPSRYLEERATKGIPL 708
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443155|ref|XP_004139346.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/714 (76%), Positives = 623/714 (87%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P VTMEVGNDGVA+IT+ NPPVNALA + LK KFEEA R+DVKA+VLTG GGR
Sbjct: 1 MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVF+ +H GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+
Sbjct: 61 FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIA PK QLGLPEL+LGVIPGFGGTQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DAVV+ EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
PQ AC+DVIE+GI+HGGYSGVLKE KVF+ELV DT++GLVHVFF+QR SKVPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFSQRLISKVPNVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV
Sbjct: 301 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
+GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 361 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 421 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID I +FGLP+GPFQL DL+GY
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQLQDLSGY 540
Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
GVA A KEF +FPDR SPLVDL+ K+GR+GK NGKG Y YEKGS+PKPDPS+ PI+
Sbjct: 541 GVATAVGKEFSASFPDRVLFSPLVDLMRKNGRDGKNNGKGYYIYEKGSRPKPDPSIAPIL 600
Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
EE RR++N+MP GKPI++++++I+EM+LFPVVNE CRV+EEGIVVR SDL+ A+VLGMSF
Sbjct: 601 EETRRIANLMPSGKPIAISDQQILEMVLFPVVNEGCRVVEEGIVVRPSDLNVATVLGMSF 660
Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLVRII 714
PSYRGG++FW D VG +VY SLKKWS+ YG+FFKPS++LEERA KGIPL I
Sbjct: 661 PSYRGGLLFWGDLVGPKHVYASLKKWSEQYGDFFKPSKYLEERAAKGIPLSEAI 714
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531273|ref|XP_003534202.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/710 (78%), Positives = 635/710 (89%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P+V EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA R+DVKAIVLTG GGR
Sbjct: 1 MALPKVDFEVGADGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDI+V QKVH GD S +PDVSVELVVN IED KKP+VAAV GLALGGGLELAMGC
Sbjct: 61 FSGGFDISVMQKVHRTGDSSHLPDVSVELVVNSIEDSKKPVVAAVAGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HAR+AAP+ QLGLPELTLG+IPGFGGTQRLPRL+GLSKA+EMML SK ITSEEG KLGLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V+SEELL SRLWAL+I R KPW+RSLHRTDK+GSLSEAREVL+ AR Q KKT P+
Sbjct: 181 DAIVSSEELLNASRLWALEIGERCKPWVRSLHRTDKIGSLSEAREVLRTARQQVKKTVPH 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQ AC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DT++GL++VFF+QRA SKVP VTD
Sbjct: 241 LPQQLACVDVIEHGIVHGGYSGVLKEAEVFKQLVVSDTAKGLINVFFSQRAISKVPGVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR V+K AVIGGGLMGSGIATA IL NI+V+LKE+N E+LLKGIKTIEANV GLV
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIHVILKEINPEFLLKGIKTIEANVNGLVR 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
RGKLT+ KA+ AL +L+GVLDYSEFKDVD+VIEAVIE++ LKQ IFS+LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLRGVLDYSEFKDVDLVIEAVIENISLKQTIFSDLEKICPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
+NTSTIDL++VG+ TSSQ+RI GAHFFSPAH+MPLLEI+RT++TSAQVILDL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQNRIAGAHFFSPAHIMPLLEIIRTDKTSAQVILDLITVGKIIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID+ IR+FG PIGPFQL DLAGY
Sbjct: 481 KTPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDTLIRNFGFPIGPFQLQDLAGY 540
Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
GVA ATSK F AF DR F+SPL+DLL+KSGRNGK NGKG Y YEK KPKPDPS+LPII
Sbjct: 541 GVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIYEKAGKPKPDPSILPII 600
Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
EE RRL NIMP GKPISVT++EIVEMILFPVVNE+CRVLE+G+V+RASDLD ASVLGMSF
Sbjct: 601 EESRRLCNIMPNGKPISVTDQEIVEMILFPVVNEACRVLEDGVVIRASDLDIASVLGMSF 660
Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
P+YRGGIVFWAD VGAN++YTSLKKW+QLYGNF+KPSR+LEERA KGIPL
Sbjct: 661 PNYRGGIVFWADLVGANHIYTSLKKWAQLYGNFYKPSRYLEERALKGIPL 710
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515444|ref|XP_004164759.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1124 bits (2906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/714 (75%), Positives = 618/714 (86%), Gaps = 5/714 (0%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P VTMEVGNDGVA+IT+ NPPVNALA + LK KFEEA R+DVKA+VLTG GGR
Sbjct: 1 MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVF+ +H GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+
Sbjct: 61 FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIA PK QLGLPEL+LGVIPGFGGTQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DAVV+ EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
PQ AC+DVIE+GI+HGGYSGVLKE KVF+ELV DT++GLVHVFF VPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFPS-----VPNVTD 295
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV
Sbjct: 296 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 355
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
+GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 356 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 415
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 416 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 475
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 540
KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID I +FGLP+GPFQL DL+GY
Sbjct: 476 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQLQDLSGY 535
Query: 541 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 600
GVA A KEF +FPDR SPLVDL+ K+GR+GK NGKG Y YEKGS+PKPDPS+ PI+
Sbjct: 536 GVATAVGKEFSASFPDRVLFSPLVDLMRKNGRDGKNNGKGYYIYEKGSRPKPDPSIAPIL 595
Query: 601 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 660
EE RR++N+MP GKPI++++++I+EM+LFPVVNE CRV+EEGIVVR SDL+ A+VLGMSF
Sbjct: 596 EETRRIANLMPSGKPIAISDQQILEMVLFPVVNEGCRVVEEGIVVRPSDLNVATVLGMSF 655
Query: 661 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLVRII 714
PSYRGG++FW D VG +VY SLKKWS+ YG+FFKPS++LEERA KGIPL I
Sbjct: 656 PSYRGGLLFWGDLVGPKHVYASLKKWSEQYGDFFKPSKYLEERAAKGIPLSEAI 709
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B1X9L4 | FADJ_ECODH | 1, ., 1, ., 1, ., 3, 5 | 0.3225 | 0.9317 | 0.9565 | yes | no |
| B2TWV4 | FADJ_SHIB3 | 1, ., 1, ., 1, ., 3, 5 | 0.3272 | 0.9290 | 0.9537 | yes | no |
| Q32DJ4 | FADJ_SHIDS | 1, ., 1, ., 1, ., 3, 5 | 0.3244 | 0.9290 | 0.9537 | yes | no |
| A4WCW6 | FADJ_ENT38 | 1, ., 1, ., 1, ., 3, 5 | 0.3253 | 0.9276 | 0.9510 | yes | no |
| B5RCL3 | FADJ_SALG2 | 1, ., 1, ., 1, ., 3, 5 | 0.3248 | 0.9195 | 0.9426 | yes | no |
| B5XVW2 | FADJ_KLEP3 | 1, ., 1, ., 1, ., 3, 5 | 0.3328 | 0.9276 | 0.9523 | yes | no |
| Q3YZM2 | FADJ_SHISS | 1, ., 1, ., 1, ., 3, 5 | 0.3258 | 0.9290 | 0.9537 | yes | no |
| Q9DBM2 | ECHP_MOUSE | 1, ., 1, ., 1, ., 3, 5 | 0.3268 | 0.9236 | 0.9428 | yes | no |
| O49809 | MFPA_BRANA | 1, ., 1, ., 1, ., 3, 5 | 0.5949 | 0.9618 | 0.9724 | N/A | no |
| B5R3R9 | FADJ_SALEP | 1, ., 1, ., 1, ., 3, 5 | 0.3262 | 0.9113 | 0.9342 | yes | no |
| B5EZR9 | FADJ_SALA4 | 1, ., 1, ., 1, ., 3, 5 | 0.3262 | 0.9113 | 0.9342 | yes | no |
| B7MY16 | FADJ_ECO81 | 1, ., 1, ., 1, ., 3, 5 | 0.3258 | 0.9290 | 0.9537 | yes | no |
| Q39659 | MFPA_CUCSA | 1, ., 1, ., 1, ., 3, 5 | 0.5943 | 0.9672 | 0.9779 | N/A | no |
| Q83QQ0 | FADJ_SHIFL | 1, ., 1, ., 1, ., 3, 5 | 0.3258 | 0.9290 | 0.9537 | yes | no |
| Q1R972 | FADJ_ECOUT | 1, ., 1, ., 1, ., 3, 5 | 0.3258 | 0.9290 | 0.9537 | yes | no |
| B5BBA1 | FADJ_SALPK | 1, ., 1, ., 1, ., 3, 5 | 0.3248 | 0.9195 | 0.9426 | yes | no |
| A1ADI8 | FADJ_ECOK1 | 1, ., 1, ., 1, ., 3, 5 | 0.3258 | 0.9290 | 0.9537 | yes | no |
| Q31YB7 | FADJ_SHIBS | 1, ., 1, ., 1, ., 3, 5 | 0.3244 | 0.9290 | 0.9537 | yes | no |
| Q9ZPI6 | AIM1_ARATH | 1, ., 1, ., 1, ., 3, 5 | 0.7560 | 0.9618 | 0.9778 | yes | no |
| Q8FFG4 | FADJ_ECOL6 | 1, ., 1, ., 1, ., 3, 5 | 0.3300 | 0.9290 | 0.9537 | yes | no |
| B5FPN1 | FADJ_SALDC | 1, ., 1, ., 1, ., 3, 5 | 0.3248 | 0.9195 | 0.9426 | yes | no |
| B7M6M2 | FADJ_ECO8A | 1, ., 1, ., 1, ., 3, 5 | 0.3244 | 0.9290 | 0.9537 | yes | no |
| A8A2L0 | FADJ_ECOHS | 1, ., 1, ., 1, ., 3, 5 | 0.3324 | 0.9276 | 0.9523 | yes | no |
| Q6NYL3 | ECHP_DANRE | 1, ., 1, ., 1, ., 3, 5 | 0.3550 | 0.9454 | 0.9651 | yes | no |
| Q5PCX6 | FADJ_SALPA | 1, ., 1, ., 1, ., 3, 5 | 0.3248 | 0.9195 | 0.9426 | yes | no |
| P07896 | ECHP_RAT | 1, ., 1, ., 1, ., 3, 5 | 0.3374 | 0.9195 | 0.9335 | yes | no |
| B6I6Q4 | FADJ_ECOSE | 1, ., 1, ., 1, ., 3, 5 | 0.3272 | 0.9290 | 0.9537 | yes | no |
| B5YXY4 | FADJ_ECO5E | 1, ., 1, ., 1, ., 3, 5 | 0.3272 | 0.9290 | 0.9537 | yes | no |
| C4ZVN2 | FADJ_ECOBW | 1, ., 1, ., 1, ., 3, 5 | 0.3225 | 0.9317 | 0.9565 | yes | no |
| B1LME7 | FADJ_ECOSM | 1, ., 1, ., 1, ., 3, 5 | 0.3230 | 0.9290 | 0.9537 | yes | no |
| B7NP24 | FADJ_ECO7I | 1, ., 1, ., 1, ., 3, 5 | 0.3244 | 0.9290 | 0.9537 | yes | no |
| Q5R5M8 | ECHP_PONAB | 1, ., 1, ., 1, ., 3, 5 | 0.3383 | 0.9195 | 0.9322 | yes | no |
| B7UFZ8 | FADJ_ECO27 | 1, ., 1, ., 1, ., 3, 5 | 0.3258 | 0.9290 | 0.9537 | yes | no |
| B7LLD0 | FADJ_ESCF3 | 1, ., 1, ., 1, ., 3, 5 | 0.3389 | 0.9304 | 0.9551 | yes | no |
| B4TCA8 | FADJ_SALHS | 1, ., 1, ., 1, ., 3, 5 | 0.3262 | 0.9113 | 0.9342 | yes | no |
| Q0T2E6 | FADJ_SHIF8 | 1, ., 1, ., 1, ., 3, 5 | 0.3258 | 0.9290 | 0.9537 | yes | no |
| B1IXA5 | FADJ_ECOLC | 1, ., 1, ., 1, ., 3, 5 | 0.3244 | 0.9290 | 0.9537 | yes | no |
| B7N5V2 | FADJ_ECOLU | 1, ., 1, ., 1, ., 3, 5 | 0.3239 | 0.9317 | 0.9565 | yes | no |
| Q08426 | ECHP_HUMAN | 1, ., 1, ., 1, ., 3, 5 | 0.3383 | 0.9236 | 0.9363 | yes | no |
| Q0TFA6 | FADJ_ECOL5 | 1, ., 1, ., 1, ., 3, 5 | 0.3267 | 0.9208 | 0.9453 | yes | no |
| Q8W1L6 | MFP_ORYSJ | 1, ., 1, ., 1, ., 3, 5 | 0.7062 | 0.9658 | 0.9752 | yes | no |
| B4SZR0 | FADJ_SALNS | 1, ., 1, ., 1, ., 3, 5 | 0.3262 | 0.9113 | 0.9342 | yes | no |
| B7MGV7 | FADJ_ECO45 | 1, ., 1, ., 1, ., 3, 5 | 0.3258 | 0.9290 | 0.9537 | yes | no |
| B7LBJ5 | FADJ_ECO55 | 1, ., 1, ., 1, ., 3, 5 | 0.3230 | 0.9290 | 0.9537 | yes | no |
| A6TC19 | FADJ_KLEP7 | 1, ., 1, ., 1, ., 3, 5 | 0.3295 | 0.9304 | 0.9551 | yes | no |
| A7ZPF8 | FADJ_ECO24 | 1, ., 1, ., 1, ., 3, 5 | 0.3272 | 0.9290 | 0.9537 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.983 |
| 3rd Layer | 5.1.2.3 | 0.979 |
| 3rd Layer | 1.1.1.35 | 0.979 |
| 4th Layer | 4.2.1.17 | 0.979 |
| 3rd Layer | 5.3.3.8 | 0.979 |
| 3rd Layer | 4.2.1 | 0.983 |
| 3rd Layer | 5.1.2 | 0.983 |
| 3rd Layer | 5.3.3 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_XVIII0682 | SubName- Full=Putative uncharacterized protein; (727 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_Genewise1_v1.C_LG_XVI3692 | acyl-CoA oxidase (EC-1.3.3.6) (437 aa) | • | • | 0.907 | ||||||
 | estExt_Genewise1_v1.C_LG_VI1706 | acyl-CoA oxidase (EC-1.3.3.6) (436 aa) | • | • | 0.906 | ||||||
 | estExt_fgenesh4_pm.C_290034 | acyl-CoA oxidase (EC-1.3.3.6) (664 aa) | • | • | 0.905 | ||||||
 | grail3.0096010101 | acyl-CoA oxidase (EC-1.3.3.6) (639 aa) | • | • | 0.903 | ||||||
 | fgenesh4_pg.C_LG_XIX000851 | acyl-CoA oxidase (EC-1.3.3.6) (680 aa) | • | • | 0.902 | ||||||
 | estExt_fgenesh4_pm.C_LG_VII0199 | acyl-CoA oxidase (EC-1.3.3.6) (689 aa) | • | • | 0.901 | ||||||
 | estExt_fgenesh4_pm.C_LG_V0077 | acyl-CoA oxidase (EC-1.3.3.6) (691 aa) | • | • | 0.901 | ||||||
 | fgenesh4_pg.C_scaffold_3547000001 | annotation not avaliable (326 aa) | • | 0.899 | |||||||
 | eugene3.07970004 | Predicted protein (395 aa) | • | • | • | 0.482 | |||||
 | fgenesh4_pg.C_scaffold_17829000001 | Predicted protein (327 aa) | • | • | • | 0.467 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 733 | |||
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 1e-163 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 1e-134 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 1e-126 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 1e-123 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 1e-122 | |
| COG1250 | 307 | COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li | 2e-85 | |
| pfam02737 | 180 | pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas | 8e-64 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 1e-63 | |
| PRK05808 | 282 | PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge | 2e-59 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 2e-59 | |
| PLN02545 | 295 | PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge | 5e-55 | |
| TIGR02279 | 503 | TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy | 3e-53 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 2e-51 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 2e-51 | |
| PRK08268 | 507 | PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena | 1e-49 | |
| PRK09260 | 288 | PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge | 9e-47 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 1e-45 | |
| PRK07819 | 286 | PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge | 1e-45 | |
| PRK06035 | 291 | PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas | 2e-43 | |
| PRK06130 | 311 | PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge | 5e-41 | |
| PRK07530 | 292 | PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge | 3e-40 | |
| PRK07657 | 260 | PRK07657, PRK07657, enoyl-CoA hydratase; Provision | 7e-40 | |
| PRK08138 | 261 | PRK08138, PRK08138, enoyl-CoA hydratase; Provision | 3e-39 | |
| PRK05809 | 260 | PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata | 7e-39 | |
| PRK05862 | 257 | PRK05862, PRK05862, enoyl-CoA hydratase; Provision | 2e-34 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 4e-34 | |
| PRK09674 | 255 | PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; | 2e-33 | |
| PRK05980 | 260 | PRK05980, PRK05980, enoyl-CoA hydratase; Provision | 2e-33 | |
| PRK06495 | 257 | PRK06495, PRK06495, enoyl-CoA hydratase; Provision | 1e-31 | |
| PRK08293 | 287 | PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge | 1e-31 | |
| PRK06127 | 269 | PRK06127, PRK06127, enoyl-CoA hydratase; Provision | 2e-30 | |
| PRK09076 | 258 | PRK09076, PRK09076, enoyl-CoA hydratase; Provision | 6e-30 | |
| PRK06190 | 258 | PRK06190, PRK06190, enoyl-CoA hydratase; Provision | 3e-27 | |
| PRK08150 | 255 | PRK08150, PRK08150, enoyl-CoA hydratase; Provision | 1e-26 | |
| PRK08258 | 277 | PRK08258, PRK08258, enoyl-CoA hydratase; Provision | 1e-26 | |
| PRK06144 | 262 | PRK06144, PRK06144, enoyl-CoA hydratase; Provision | 3e-26 | |
| PRK08252 | 254 | PRK08252, PRK08252, enoyl-CoA hydratase; Provision | 3e-26 | |
| PRK09245 | 266 | PRK09245, PRK09245, enoyl-CoA hydratase; Provision | 9e-26 | |
| PRK06210 | 272 | PRK06210, PRK06210, enoyl-CoA hydratase; Provision | 1e-25 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 1e-25 | |
| PLN02600 | 251 | PLN02600, PLN02600, enoyl-CoA hydratase | 4e-25 | |
| PRK08260 | 296 | PRK08260, PRK08260, enoyl-CoA hydratase; Provision | 4e-24 | |
| PRK03580 | 261 | PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr | 4e-24 | |
| PRK05995 | 262 | PRK05995, PRK05995, enoyl-CoA hydratase; Provision | 5e-24 | |
| TIGR01929 | 259 | TIGR01929, menB, naphthoate synthase (dihydroxynap | 6e-24 | |
| PRK06142 | 272 | PRK06142, PRK06142, enoyl-CoA hydratase; Provision | 7e-24 | |
| PRK05981 | 266 | PRK05981, PRK05981, enoyl-CoA hydratase; Provision | 2e-23 | |
| PRK06143 | 256 | PRK06143, PRK06143, enoyl-CoA hydratase; Provision | 1e-22 | |
| PRK08259 | 254 | PRK08259, PRK08259, enoyl-CoA hydratase; Provision | 2e-22 | |
| PRK05864 | 276 | PRK05864, PRK05864, enoyl-CoA hydratase; Provision | 3e-22 | |
| PRK05869 | 222 | PRK05869, PRK05869, enoyl-CoA hydratase; Validated | 4e-22 | |
| pfam00725 | 97 | pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, | 2e-21 | |
| PRK07799 | 263 | PRK07799, PRK07799, enoyl-CoA hydratase; Provision | 2e-21 | |
| PRK07509 | 262 | PRK07509, PRK07509, enoyl-CoA hydratase; Provision | 3e-21 | |
| COG0447 | 282 | COG0447, MenB, Dihydroxynaphthoic acid synthase [C | 6e-21 | |
| PRK08269 | 314 | PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge | 3e-20 | |
| TIGR02280 | 256 | TIGR02280, PaaB1, phenylacetate degradation probab | 4e-20 | |
| PRK07511 | 260 | PRK07511, PRK07511, enoyl-CoA hydratase; Provision | 4e-20 | |
| PRK05870 | 249 | PRK05870, PRK05870, enoyl-CoA hydratase; Provision | 4e-20 | |
| PRK07938 | 249 | PRK07938, PRK07938, enoyl-CoA hydratase; Provision | 5e-20 | |
| PLN02664 | 275 | PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d | 1e-19 | |
| PRK07110 | 249 | PRK07110, PRK07110, polyketide biosynthesis enoyl- | 2e-19 | |
| PRK07396 | 273 | PRK07396, PRK07396, dihydroxynaphthoic acid synthe | 1e-17 | |
| TIGR03210 | 256 | TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd | 2e-17 | |
| PLN02921 | 327 | PLN02921, PLN02921, naphthoate synthase | 4e-17 | |
| PRK08140 | 262 | PRK08140, PRK08140, enoyl-CoA hydratase; Provision | 8e-17 | |
| PRK08290 | 288 | PRK08290, PRK08290, enoyl-CoA hydratase; Provision | 2e-16 | |
| PRK06023 | 251 | PRK06023, PRK06023, enoyl-CoA hydratase; Provision | 2e-16 | |
| PRK07327 | 268 | PRK07327, PRK07327, enoyl-CoA hydratase; Provision | 3e-16 | |
| PRK07531 | 495 | PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA | 4e-16 | |
| PRK06213 | 229 | PRK06213, PRK06213, enoyl-CoA hydratase; Provision | 5e-16 | |
| PRK06129 | 308 | PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas | 9e-16 | |
| PRK07468 | 262 | PRK07468, PRK07468, enoyl-CoA hydratase; Provision | 1e-15 | |
| PRK07659 | 260 | PRK07659, PRK07659, enoyl-CoA hydratase; Provision | 1e-15 | |
| PRK06563 | 255 | PRK06563, PRK06563, enoyl-CoA hydratase; Provision | 4e-15 | |
| TIGR03189 | 251 | TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar | 4e-15 | |
| PRK07854 | 243 | PRK07854, PRK07854, enoyl-CoA hydratase; Provision | 4e-15 | |
| PRK07260 | 255 | PRK07260, PRK07260, enoyl-CoA hydratase; Provision | 8e-15 | |
| PRK08139 | 266 | PRK08139, PRK08139, enoyl-CoA hydratase; Validated | 2e-14 | |
| PRK08788 | 287 | PRK08788, PRK08788, enoyl-CoA hydratase; Validated | 3e-14 | |
| PRK11423 | 261 | PRK11423, PRK11423, methylmalonyl-CoA decarboxylas | 7e-14 | |
| PRK07827 | 260 | PRK07827, PRK07827, enoyl-CoA hydratase; Provision | 2e-13 | |
| PRK09120 | 275 | PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata | 5e-13 | |
| PRK08272 | 302 | PRK08272, PRK08272, enoyl-CoA hydratase; Provision | 9e-13 | |
| PRK05617 | 342 | PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol | 1e-12 | |
| PRK06072 | 248 | PRK06072, PRK06072, enoyl-CoA hydratase; Provision | 2e-12 | |
| PRK07112 | 255 | PRK07112, PRK07112, polyketide biosynthesis enoyl- | 5e-12 | |
| PLN03214 | 278 | PLN03214, PLN03214, probable enoyl-CoA hydratase/i | 3e-10 | |
| PLN02874 | 379 | PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol | 1e-09 | |
| PRK08321 | 302 | PRK08321, PRK08321, naphthoate synthase; Validated | 2e-09 | |
| PRK07066 | 321 | PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge | 2e-09 | |
| TIGR03200 | 360 | TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car | 8e-09 | |
| PLN02988 | 381 | PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol | 1e-08 | |
| PLN02851 | 407 | PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol | 4e-08 | |
| PLN02267 | 239 | PLN02267, PLN02267, enoyl-CoA hydratase/isomerase | 5e-06 | |
| PRK12478 | 298 | PRK12478, PRK12478, enoyl-CoA hydratase; Provision | 4e-05 | |
| PRK05674 | 265 | PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr | 4e-05 | |
| pfam00725 | 97 | pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, | 3e-04 | |
| PLN02157 | 401 | PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol | 3e-04 | |
| TIGR03222 | 546 | TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya | 9e-04 | |
| PRK08184 | 550 | PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; | 0.002 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 486 bits (1253), Expect = e-163
Identities = 254/725 (35%), Positives = 374/725 (51%), Gaps = 37/725 (5%)
Query: 1 MAAPRV-TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-G 56
M T+ V D +A+IT+ P +N L ++ ++ ++K +V G
Sbjct: 1 MEMASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISG 60
Query: 57 NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
F G DIN+ A + + + + IE P+VAA+ G LGGGLEL
Sbjct: 61 KPDNFIAGADINMLAACKTAQEAEALARQGQQ-LFAEIEALPIPVVAAIHGACLGGGLEL 119
Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
A+ CH R+ PKT LGLPE+ LG++PG GGTQRLPRL+G+S A++M+L K + +++
Sbjct: 120 ALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQA 179
Query: 175 WKLGLIDAVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL-KLAR 231
KLGL+D VV LL+V+ A A R P L + LG R +L K AR
Sbjct: 180 LKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLG-----RALLFKQAR 234
Query: 232 LQA-KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290
+ KT N P + LDV+ G+ G SG EA+ F EL M S L +FFA
Sbjct: 235 KKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATT 294
Query: 291 ATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIK 349
K KPR V KV V+GGGLMG GIA + V +K++N + + +K
Sbjct: 295 EMKKDTGS---DAKPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALK 351
Query: 350 TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSEL 409
+ V R L + + + ++ G DY FK D+VIEAV E + LKQ++ +E+
Sbjct: 352 YSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQMVAEV 411
Query: 410 EKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469
E+ C PH I A+NTS++ + + + +++IG H+FSP MPL+E++ +TSA+ I
Sbjct: 412 EQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETI 471
Query: 470 LDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLP 528
+ + K K P+VV + GF VNR PY +++ARLL+ G + ID+A+ FG P
Sbjct: 472 ATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLE-GEPIEHIDAALVKFGFP 530
Query: 529 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTYEKG 587
+GP LLD G V + A +R F +P D LL R G+ NG+G Y Y +
Sbjct: 531 VGPITLLDEVGIDVGTKIIPILEAALGER-FSAPAAFDKLLNDDRKGRKNGRGFYLYGQK 589
Query: 588 SKPK---PDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIV 644
K D SV P++ I P + ++ EI E + ++NE+ R L+EGI+
Sbjct: 590 GKKSKKQVDESVYPLL-------GITPQSR---LSANEIAERCVMLMLNEAVRCLDEGII 639
Query: 645 VRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 704
A D D +V G+ FP + GG + D++GA V L++ + YG+ F P L E A
Sbjct: 640 RSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMA 699
Query: 705 TKGIP 709
+G
Sbjct: 700 ERGES 704
|
Length = 708 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 412 bits (1060), Expect = e-134
Identities = 244/715 (34%), Positives = 366/715 (51%), Gaps = 36/715 (5%)
Query: 7 TMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSG 63
T+ V DG+AI+T+ +N L + + + ++ +VL +G F
Sbjct: 3 TLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIA 62
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
G DI++ AG+ + L +E P+VAA+ G LGGGLELA+ CH+R
Sbjct: 63 GADISMLAACQTAGEAKALAQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSR 121
Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
+ + KT LGLPE+ LG++PG GGTQRLPRL+G+S A++M+L K + +++ KLGL+D
Sbjct: 122 VCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 181
Query: 182 AVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL--KLARLQAKKT 237
VV LL + AL + L LG R +L + A+ AKKT
Sbjct: 182 DVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLG-----RALLFDQAAKKTAKKT 236
Query: 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297
N P + LDV+ +G+ G G+ EA+ F ELVM S L +FFA K
Sbjct: 237 QGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETG 296
Query: 298 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVR 356
P ++KV ++GGGLMG GIA+ I V +K++N + + +K +
Sbjct: 297 SDAT---PAKIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLD 353
Query: 357 GLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPH 416
V R +T + +N + ++ G DY FKDVD+VIEAV E + LK ++ ++E+ C H
Sbjct: 354 KGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAH 413
Query: 417 CILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG 476
I A+NTS++ + + S + +IG H+FSP MPL+E++ TS Q I + +
Sbjct: 414 TIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA 473
Query: 477 KIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLL 535
K K P+VV + GF VNR PY +++ARLL+ G V ID A+ FG P+GP LL
Sbjct: 474 KKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLE-GEPVEHIDKALVKFGFPVGPITLL 532
Query: 536 DLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP-DP 594
D G V A S + +R + D LL R G+ NGKG Y Y +K K D
Sbjct: 533 DEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDE 592
Query: 595 SVLPIIEECRRLSNIMPGGKPIS--VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDD 652
SV ++ I PG + V E+ ++ M+ NE+ R L+EG++ D D
Sbjct: 593 SVYGLL-------GIKPGVDKEASAVAERCVMLML-----NEAVRCLDEGVIRSPRDGDI 640
Query: 653 ASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
++ G+ FP + GG + D +GA+ V L++ YG+ F P + L A +
Sbjct: 641 GAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEK 695
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 392 bits (1010), Expect = e-126
Identities = 239/719 (33%), Positives = 370/719 (51%), Gaps = 47/719 (6%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DG+A + P VN L +A L + + ++ D+K ++LT F G DI F
Sbjct: 15 DGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFL 74
Query: 72 KVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+ A + L + + N +ED P VAA+ G ALGGG E + R+A+P +
Sbjct: 75 SLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDAR 134
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+GLPE LG++PGFGGT RLPRL+G A+E + K + +E+ K+G +DAVV E+L
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQ 194
Query: 191 K--VSRLWA-----LDIAARRKPWIRSLHRTDKLGSLS----EAREVLKLAR-LQAKKTA 238
+ ++ L LD ARR+P KL L EA A+ + A+K
Sbjct: 195 EAALALLKQAIAGKLDWKARRQP---------KLEPLKLSKIEAMMSFTTAKGMVAQKAG 245
Query: 239 PNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297
+ P + IE G L+ EAK F +L + +R LV +F +
Sbjct: 246 KHYPAPMTAVKTIEAAAGL-GRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAK 304
Query: 298 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRG 357
KP V++ AV+G G+MG GIA + V++K++N + L G+ +
Sbjct: 305 KLAKDAKP--VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNK 362
Query: 358 LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC 417
V RGK+ K L ++ LDY+ F+ VD+V+EAV+E+ +K + +E+E+
Sbjct: 363 QVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDT 422
Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477
ILA+NTSTI ++++ + + G HFF+P H MPL+E++R E+TS + I ++
Sbjct: 423 ILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYAS 482
Query: 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLD 536
+ K P+VV +C GF VNR FPY L+ G D +ID + + FG P+GP LLD
Sbjct: 483 KMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLD 542
Query: 537 LAGYGVAAATSKEFDKAFPDR---SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP- 592
+ G A + FPDR ++ +D+L ++ R G+ NGKG Y YE+ K KP
Sbjct: 543 VVGIDTAHHAQAVMAEGFPDRMKKDYRDA-IDVLFEAKRFGQKNGKGFYRYEEDKKGKPK 601
Query: 593 ---DPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASD 649
DP+V ++ ++ + +++EI+ ++ P++NE R LEEGIV ++
Sbjct: 602 KEVDPAVYELLAP------VVQPKR--EFSDEEIIARMMIPMINEVVRCLEEGIVASPAE 653
Query: 650 LDDASVLGMSFPSYRGGIVFWADAVG-ANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
D A V G+ FP +RGG + D +G ANYV + K++ L G ++ L E A G
Sbjct: 654 ADMALVYGLGFPPFRGGAFRYLDTLGVANYVALA-DKYAHL-GPLYQVPEGLREMAANG 710
|
Length = 715 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 385 bits (990), Expect = e-123
Identities = 245/731 (33%), Positives = 364/731 (49%), Gaps = 38/731 (5%)
Query: 1 MAAPRVTMEVGND-GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNG 58
MA EV D V I N VN L+ + A K+ E + + +K+ VL +G
Sbjct: 10 MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP 69
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
G F G DI + A +V+ + E+ IE +KPIVAA+ G LGGGLELA+
Sbjct: 70 GSFVAGADIQMIAACKTAQEVTQLSQEGQEMFER-IEKSQKPIVAAISGSCLGGGLELAL 128
Query: 119 GCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
CH RIA KT LGLPE+ LG++PG GGTQRLP+L G+ A++MML K I ++ K
Sbjct: 129 ACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKK 188
Query: 177 LGLIDAVV-------------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 223
+G++D +V T E L +V+ +A +A + R K+
Sbjct: 189 MGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMT 248
Query: 224 -----REVLKLARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD 277
++V K A + K T P LDV+ G G +G E+K F EL M
Sbjct: 249 NPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTF 308
Query: 278 TSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLK 337
S+ L+ +F Q K G R V+ +AV+G GLMG+GIA + + VLK
Sbjct: 309 ESKALIGLFHGQTDCKK----NKFGKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLK 364
Query: 338 EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397
+ L +G + + + V R K+T + ++ L L LDYS FK+ DMVIEAV E
Sbjct: 365 DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFE 424
Query: 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE 457
+ LK K+ E+E PPHCI+A+NTS + + + +S +++IG H+FSP M LLE
Sbjct: 425 DLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLE 484
Query: 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR 517
I+ + TS + + VG KV +VV + GF R P L+ GVD +
Sbjct: 485 IITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKK 544
Query: 518 IDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR-SFQSP-LVDLLLKSGRNGK 575
+D FG P+G L D G VA +++ KAF +R S L+ L+K+G G+
Sbjct: 545 LDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGR 604
Query: 576 ANGKGLYTYEKGSKPKPD--PSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVN 633
+GKG++ Y++G K I+ + + +P +S E + ++ VN
Sbjct: 605 KSGKGIFIYQEGKKGSKKVNSDADEILAQYK-----LPPKAEVSSPEDIQIRLVS-RFVN 658
Query: 634 ESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF 693
E+ LEEGI+ S+ D +V G+ FP + GG + D GA+ + ++K++ YG
Sbjct: 659 EAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQ 718
Query: 694 FKPSRFLEERA 704
F P + L + A
Sbjct: 719 FTPCQLLLDHA 729
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 382 bits (983), Expect = e-122
Identities = 230/725 (31%), Positives = 360/725 (49%), Gaps = 35/725 (4%)
Query: 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
+ + DG+A + P VN +A L + ++ +K ++LT F
Sbjct: 5 GKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAF 64
Query: 62 SGGFDINVFQKVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
G DI F + D L+ + + N +ED P VAA+ G+ALGGG E +
Sbjct: 65 IVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT 124
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
RIA ++GLPE LG++PGFGGT RLPR++G A+E + K +E+ K+G +
Sbjct: 125 DFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAV 184
Query: 181 DAVVTSEEL-------LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR-L 232
DAVVT+++L LK + LD A+R+P + L KL + EA A+ +
Sbjct: 185 DAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPL----KLSKI-EAMMSFTTAKGM 239
Query: 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292
A+ P+ P + IE+ G + EAK F +L ++ L+ +F +
Sbjct: 240 VAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYV 299
Query: 293 SKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352
D K V++ AV+G G+MG GIA +V+K++N L G+
Sbjct: 300 KGKAKKADKIAK--DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAA 357
Query: 353 ANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKA 412
+ V RG++T K L + L Y+ F +VD+V+EAV+E+ +K + +E+E+
Sbjct: 358 KLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQH 417
Query: 413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDL 472
ILA+NTSTI ++++ + + G HFF+P H MPL+E++R E++S + I +
Sbjct: 418 VREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATV 477
Query: 473 MTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGP 531
+ + K P+VV +C GF VNR FPY L+ G D RID + + FG P+GP
Sbjct: 478 VAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGP 537
Query: 532 FQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 589
LLD+ G + FPDR + +D L ++ R G+ NGKG Y YE K
Sbjct: 538 AYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKK 597
Query: 590 PKP----DPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVV 645
KP D SVL +++ + ++EI+ ++ P++NE+ R LEEGIV
Sbjct: 598 GKPKKLVDSSVLELLKPV--------VYEQRDFDDEEIIARMMIPMINETVRCLEEGIVA 649
Query: 646 RASDLDDASVLGMSFPSYRGGIVFWADAVG-ANYVYTSLKKWSQLYGNFFKPSRFLEERA 704
A++ D V G+ FP +RGG + D++G AN+V +L G ++ + L E A
Sbjct: 650 TAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFV--ALADQYAELGALYQVTAKLREMA 707
Query: 705 TKGIP 709
G
Sbjct: 708 KNGQS 712
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 271 bits (696), Expect = 2e-85
Identities = 118/298 (39%), Positives = 177/298 (59%), Gaps = 5/298 (1%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
++KVAVIG G+MG+GIA L VVLK+++ E L + + IE N+ LV +GKLT++
Sbjct: 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE 62
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
+A+ AL + D + KD D+VIEAV+E + LK+++F+ELE P ILA+NTS++
Sbjct: 63 EADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + E +R IG HFF+P +MPL+E++R E+TS + + ++ K I K PVVV
Sbjct: 123 ITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVK 182
Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
+ GF VNR A L+ GV ID+A+R GLP+GPF+L DL G V
Sbjct: 183 DVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLH 242
Query: 546 TSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE-KGSKPKPDPSVLPII 600
K ++ D + PL+ L+++GR G+ +GKG Y Y + KP P+ + +I
Sbjct: 243 IMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRGEAIKPLPNEAARCLI 300
|
Length = 307 |
| >gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 8e-64
Identities = 72/180 (40%), Positives = 113/180 (62%)
Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
KVAVIG G MG+GIA + VVL +++ E L K IE ++ LV +G++T++ A
Sbjct: 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60
Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
+ L + D ++ D D+VIEAV E++ LK+++F+EL+ PP ILA+NTS++ +
Sbjct: 61 DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120
Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489
+ T +R IG HFF+P +MPL+E+VR E+TS + + ++ + K I K PVVV +
Sbjct: 121 ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180
|
This family also includes lambda crystallin. Length = 180 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 1e-63
Identities = 95/226 (42%), Positives = 129/226 (57%), Gaps = 7/226 (3%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
M V +E D VA+ITL +PP NAL+ ++ L + ++ D+V+ +V+ G G
Sbjct: 1 MKFLSVRVE---DHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRF 57
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FS G DI F V A + + + ++ +E KP++AA+ G ALGGGLELAM C
Sbjct: 58 FSAGADIKEFTSVTEAEQATELAQLG-QVTFERVEKFSKPVIAAIHGAALGGGLELAMSC 116
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
H R A +LGLPEL LG+IPGF GTQRLPR VG +KA+EMML S+ IT E K GL+
Sbjct: 117 HIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLV 176
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRS---LHRTDKLGSLSEA 223
+ V E LL ++ A IA + R+ L +T K S E
Sbjct: 177 NGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEG 222
|
Length = 257 |
| >gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 2e-59
Identities = 101/282 (35%), Positives = 154/282 (54%), Gaps = 5/282 (1%)
Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
G++K+ VIG G MG+GIA + VV+ +++ + +G+ TI ++ LV +GK+T+
Sbjct: 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTE 61
Query: 367 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426
AL + G D + KD D+VIEA E++ LK+KIF++L++ P ILATNTS++
Sbjct: 62 ADKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL 121
Query: 427 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
+ + T D++IG HFF+P VM L+EI+R TS + + K I K PV V
Sbjct: 122 SITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV 181
Query: 487 GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQLLDLAGYGVA 543
N GF VNR P A +++ GV ID ++ G PIGP L DL G
Sbjct: 182 KNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMK-LGCNHPIGPLALADLIGLDTC 240
Query: 544 AATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY 584
A + + F D ++ PL+ ++ +G G+ G+G Y Y
Sbjct: 241 LAIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282
|
Length = 282 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 2e-59
Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Query: 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+ GVA ITL P NAL++ ++ L +EA + DV+ +VLTG G F G D+
Sbjct: 6 DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKEL 65
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+ AG+ + ++ ++ + KP++AAV G ALGGGLELA+ C RIAA +
Sbjct: 66 AALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAK 125
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
GLPE+ LG++PG GGTQRLPRLVG ++A E++L + I++EE +LGL+D VV EELL
Sbjct: 126 FGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELL 185
Query: 191 KVSRLWALDI 200
+ A +
Sbjct: 186 AAALELARRL 195
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 5e-55
Identities = 92/288 (31%), Positives = 153/288 (53%), Gaps = 3/288 (1%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
++KV V+G G MGSGIA + V L + + L +G+ +I +++ LV +GK++Q+
Sbjct: 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
+A+ L ++ + E +D D +IEA++ES LK+K+FSEL++ C P ILA+NTS+I
Sbjct: 64 EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + T ++IG HF +P +M L+EI+R TS +V + + K V
Sbjct: 124 ITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ 183
Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
+ GF VNR P A + GV ID+ ++ P+GP L D G +
Sbjct: 184 DYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLS 243
Query: 546 TSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 592
K + D ++ PL+ + +GR G+ +G+G+Y Y+ + P
Sbjct: 244 IMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKKRGDP 291
|
Length = 295 |
| >gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 3e-53
Identities = 107/290 (36%), Positives = 161/290 (55%), Gaps = 5/290 (1%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
V VAVIG G MG+GIA V+L ++ +E L + I IEA + LVT+GKLT +
Sbjct: 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE 64
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
+ LK L V D D +VIEA++E++ +K+ +F++LE+ CP I+A+NTS++
Sbjct: 65 ECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS 124
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + + +R+ G HFF+PA VM L+E+V T+A+V L K PV
Sbjct: 125 ITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCH 184
Query: 488 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAGYGVA-A 544
+ GF VNR P Y+++ R L +D+A+R G P+GPF+L DL G+ V A
Sbjct: 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNFA 244
Query: 545 ATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY-EKGSKPKP 592
T F+ + DR F S + L+ +GR G+ +G G+Y Y E+ P
Sbjct: 245 VTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVP 294
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 2e-51
Identities = 84/192 (43%), Positives = 114/192 (59%), Gaps = 3/192 (1%)
Query: 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
GVA+I L P VNAL+ ++ L E+ VKAIVLTG G FS G DI
Sbjct: 5 EAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEM 64
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
A + + + +ED KP++AAV G ALGGGLELA+ C RIAA +
Sbjct: 65 AAEPLAQQAQFSL--EAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAK 122
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
GLPE+ LG+IPG GGTQRLPR++G+S A+EM+L + I ++E K+GL+D VV E+L+
Sbjct: 123 FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLV 182
Query: 191 KVSRLWALDIAA 202
+ + A +A
Sbjct: 183 EEAIELAQRLAD 194
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 2e-51
Identities = 89/230 (38%), Positives = 129/230 (56%), Gaps = 5/230 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DG+A+ITL P NAL + ++ L + +EA + DV+ +VLTG G FS G D+
Sbjct: 13 DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELL 72
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+ + ++ + D KP++AAV G ALGGGLELA+ C RIAA +
Sbjct: 73 SPEDGNAAENLMQPGQD-LLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKF 131
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELL 190
GLPE+ LG++PG GGTQRLPRL+G +A E++L + I++ E +LGL+D VV +EELL
Sbjct: 132 GLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191
Query: 191 KVSRLWALDIAARRK--PWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238
+ + A +AA + L R L+EA E LA + +
Sbjct: 192 ERALELARRLAAPPLALAATKRLVRAALEADLAEALEAEALAFARLFSSE 241
|
Length = 257 |
| >gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 1e-49
Identities = 103/311 (33%), Positives = 161/311 (51%), Gaps = 4/311 (1%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
+ VAVIG G MG+GIA V+L + + I A + LV +GKLT +
Sbjct: 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE 66
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
+A+ AL L+ V ++ D D+V+EA++E + +KQ +F++LE P CILATNTS++
Sbjct: 67 QADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS 126
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + +R+ G HFF+P +M L+E+V T V L + + K PV
Sbjct: 127 ITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK 186
Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVA-A 544
+ GF VNRA PY A ++ GV D ID+ +R + G +GPF+L+DL G V A
Sbjct: 187 DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVNHA 246
Query: 545 ATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEEC 603
+ + + + F+ S + L+ +GR G+ +G+G Y Y G+K P + P
Sbjct: 247 VMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPP 306
Query: 604 RRLSNIMPGGK 614
+S + G
Sbjct: 307 VWVSADVEGDL 317
|
Length = 507 |
| >gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 9e-47
Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 3/283 (1%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
+ K+ V+G G+MG GIA ++ L ++ E L + I + V RGKLT+
Sbjct: 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60
Query: 368 KANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426
AL L LD D D+VIEAV E + LK+ +F + P C +ATNTST+
Sbjct: 61 ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120
Query: 427 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
+ T +R+I HFF+P H M L+E++R TS + + V + + K VVV
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180
Query: 487 GNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAGYGVAA 544
GF +R A ++ GV ID AIR P+GP +L DL G
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240
Query: 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 587
K + ++ +PL++ +K+GR G+ G+G+Y Y
Sbjct: 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283
|
Length = 288 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 1e-45
Identities = 72/191 (37%), Positives = 101/191 (52%), Gaps = 4/191 (2%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DGV IT+ P NAL + L D E A + V+ +VLTG G FS G DI F
Sbjct: 13 DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFP 72
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
K L P V + I KP+VAAV G A+G G+ LA+ C A+ +
Sbjct: 73 KAPPKPPDELAP---VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKF 129
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
LP LG+ P GG+ LPRL+G ++A EM+LL + +++EE ++GL++ VV + EL
Sbjct: 130 SLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDA 189
Query: 192 VSRLWALDIAA 202
+ A +AA
Sbjct: 190 EADAQAAKLAA 200
|
Length = 259 |
| >gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 1e-45
Identities = 96/284 (33%), Positives = 150/284 (52%), Gaps = 7/284 (2%)
Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
+++V V+G G MG+GIA + V++ E E G IE ++ V+RGKLT+
Sbjct: 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTE 63
Query: 367 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP-PHCILATNTST 425
+ + AL L+ D +F D +VIEAV+E +K +IF+EL+K P +LA+NTS+
Sbjct: 64 RERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT-VGKIIKKVPV 484
I + + T R++G HFF+P V+PL+E+V T TS + ++ K V
Sbjct: 124 IPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVV 183
Query: 485 VVGNCTGFAVNRAFFPYSQSA-RLLVSLGVDVFRIDSAIRSFGL--PIGPFQLLDLAGYG 541
+ +GF VN PY SA R++ S ID A+ G P+GP +L DL G
Sbjct: 184 RAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMV-LGCAHPMGPLRLSDLVGLD 242
Query: 542 VAAATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTY 584
A + + F + + P L+ ++++G GK +G+G YTY
Sbjct: 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286
|
Length = 286 |
| >gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 2e-43
Identities = 79/237 (33%), Positives = 131/237 (55%), Gaps = 5/237 (2%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN---VRGLVTRGKL 364
++ + V+G G+MG GIA V + +V+ E L ++ IE+ +R LV +GK+
Sbjct: 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
++D+A + ++ Y D D ++EAV E + LK+K+F+ELE+ P I+A+NTS
Sbjct: 63 SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
I + + +DR IG H+F+PA VM L+E+VR TS + + + K I K+P+
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182
Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAG 539
V + GF R + A +G+ + ID + +FG P+GPF+L+D+ G
Sbjct: 183 EVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIG 239
|
Length = 291 |
| >gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 5e-41
Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 10/284 (3%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
++ +A+IG G MGSGIA + VVL +V L + IE G V
Sbjct: 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERA-LG-VYAPLGIAS 61
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
++M G+ D+VIEAV E + LK+ +F+ L+ C P I ATNTS +
Sbjct: 62 AGMGRIRMEAGLAA--AVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP 119
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + + + +R +G HFF+PA V+PL+E+VR ++TS Q + M + + I K PV+V
Sbjct: 120 ITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVK 179
Query: 488 -NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPI---GPFQLLDLAGYG 541
+ GF NR ++ A L+ GV ID ++ S G+ + GP + D+ G
Sbjct: 180 KDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNGLD 239
Query: 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
V A + + +R+ SPL++ +++G G +G+G Y +
Sbjct: 240 VHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWP 283
|
Length = 311 |
| >gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-40
Identities = 95/292 (32%), Positives = 144/292 (49%), Gaps = 12/292 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
++KV VIG G MG+GIA L V+L +V+++ L G+ TI N+ V +GK++++
Sbjct: 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP---PHCILATNTS 424
AL + D + D D+VIEA E +K+KIF++L CP P ILATNTS
Sbjct: 64 ARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQL---CPVLKPEAILATNTS 120
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
+I + + T +R IG HF +P VM L+E++R T + K
Sbjct: 121 SISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTIT 180
Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQLLDLAGYG 541
V + F VNR P A + GV V ID+A++ G P+GP +L D G
Sbjct: 181 VAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMK-LGANHPMGPLELADFIGLD 239
Query: 542 VAAATSKEFDKAFPDRSFQS-PLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 592
+ + D ++ PL+ +++G G+ G+G Y Y +G P P
Sbjct: 240 TCLSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDY-RGEVPVP 290
|
Length = 292 |
| >gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 7e-40
Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 20/206 (9%)
Query: 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
++++ V ITL P NAL++ ++ L++ + +V+ ++LTG G + F
Sbjct: 5 ISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCA 64
Query: 64 GFDI------NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
G D+ N Q H VSL + + ++E +P++AA+ G+ALGGGLELA
Sbjct: 65 GADLKERAGMNEEQVRHA---VSL-----IRTTMEMVEQLPQPVIAAINGIALGGGLELA 116
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
+ C RIAA LGL E TL +IPG GGTQRLPRL+G+ +A E++ + I+++E ++
Sbjct: 117 LACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEI 176
Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
GL++ VV + L + A++IA +
Sbjct: 177 GLVEFVVPAHLLEEK----AIEIAEK 198
|
Length = 260 |
| >gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 3e-39
Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 9/204 (4%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
A V +E DGVA++ L P NAL + + L + F E + D++AIVLTG
Sbjct: 4 TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEK 63
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G DI F GA ++ L E I C KP++AAV G ALGGG ELAM
Sbjct: 64 VFAAGADIKEFATA-GAIEMYLR---HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMH 119
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
+A G PE+ +G++PG GGTQRL R VG KA+ M L + + E +GL
Sbjct: 120 ADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGL 179
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ VV E+ L AL++A
Sbjct: 180 VSEVVEDEQTLPR----ALELARE 199
|
Length = 261 |
| >gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 7e-39
Identities = 81/214 (37%), Positives = 120/214 (56%), Gaps = 30/214 (14%)
Query: 8 MEVGN------DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
ME+ N +A++T IN P +NAL + L ++ + D+V A++LTG G
Sbjct: 1 MELKNVILEKEGHIAVVT-INRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGE 59
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVE----------LVVNLIEDCKKPIVAAVEGLA 109
+ F V GA D+S M D++ E V +E+ KP++AA+ G A
Sbjct: 60 K---AF-------VAGA-DISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFA 108
Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
LGGG EL+M C RIA+ K + G PE+ LG+ PGFGGTQRL R+VG KA E++ I
Sbjct: 109 LGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMI 168
Query: 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
+EE ++GL++ VV E+L++ ++ A IAA
Sbjct: 169 NAEEALRIGLVNKVVEPEKLMEEAKALANKIAAN 202
|
Length = 260 |
| >gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
V +ITL P +NAL ++ L + + + AIV+TG+ F+ G DI
Sbjct: 12 GRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMA 71
Query: 72 KVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
D+S M + + N + +KP++AAV G ALGGG ELAM C IAA
Sbjct: 72 ------DLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTA 125
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
+ G PE+ LGV+PG GG+QRL R VG +KA+++ L + + + E + GL+ VV +++L
Sbjct: 126 KFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKL 185
Query: 190 LKVSRLWALDIAARRKP 206
L + A IA+ P
Sbjct: 186 LDEALAAATTIASFSLP 202
|
Length = 257 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 4e-34
Identities = 76/206 (36%), Positives = 109/206 (52%), Gaps = 12/206 (5%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
MA P T+E V I+TL P V NAL + L++ F++ + + ++TG G
Sbjct: 1 MALPFSTVE-RKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGD 59
Query: 60 R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIVAAVEGLALGGGLEL 116
+ FS G D+ K AG P+ L D KPI+AAV G+A+GGG EL
Sbjct: 60 KAFSAGNDL----KEQAAGGKRGWPESGF---GGLTSRFDLDKPIIAAVNGVAMGGGFEL 112
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
A+ C +AA LPE +G+ GG RLPR +GL +A+ M+L + +T+ EG +
Sbjct: 113 ALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLE 172
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAA 202
LG ++ VV + ELL + WA DI A
Sbjct: 173 LGFVNEVVPAGELLAAAERWADDILA 198
|
Length = 259 |
| >gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
V ++TL P NAL ++ L ++ E A + + V+TGN F+ G D+N
Sbjct: 10 QRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMA 69
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+ A + D +L ++ KP++AAV G ALG G ELA+ C IA +
Sbjct: 70 EKDLAA---TLNDPRPQLWQR-LQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARF 125
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
GLPE+TLG++PG GGTQRL R VG S A +M+L +SIT+++ + GL+ V E L
Sbjct: 126 GLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE--LT 183
Query: 192 VSRLWALDIAAR 203
+ R AL +A++
Sbjct: 184 LER--ALQLASK 193
|
Length = 255 |
| >gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 14/199 (7%)
Query: 13 DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
DG+A++TL P +NAL ++ L + + + V+A++LTG G R FS G DI+ F
Sbjct: 11 DGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEF 70
Query: 71 QKVHGAGDVSLMPDVSVELVV-------NLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
+ V+ DV++ V +E KP++AAV GLA GGG E+ H
Sbjct: 71 -----SASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLA 125
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
IA+ + PE+ LG+ P FGGTQRLPRL G +A+E++L + ++E ++GL++AV
Sbjct: 126 IASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAV 185
Query: 184 VTSEELLKVSRLWALDIAA 202
V EELL +R A I
Sbjct: 186 VPHEELLPAARALARRIIR 204
|
Length = 260 |
| >gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 1e-31
Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 5/192 (2%)
Query: 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
D VA++TL NPPVNAL+ + L F+E + R DV+ +VLTG G F G D+
Sbjct: 12 DHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPD 71
Query: 73 VH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
V G GD+ + E + I +C KP++AAV G ALG GL L C +A+
Sbjct: 72 VIKGPGDLRAHNRRTRE-CFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVF 130
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
GLPE+ +G+ GG + RL G S MML + + E ++ G+I+A + EEL+
Sbjct: 131 GLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMP 187
Query: 192 VSRLWALDIAAR 203
+ A +IA++
Sbjct: 188 EAMEIAREIASK 199
|
Length = 257 |
| >gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 84/286 (29%), Positives = 130/286 (45%), Gaps = 11/286 (3%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ- 366
++ V V G G++GS IA + V + +++ E L K + I V + T+
Sbjct: 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62
Query: 367 DKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
A AL + D +E KD D+VIEAV E +K + EL K P I ATN+ST
Sbjct: 63 APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
+ + E T ++ + HF + EI+ T +V ++ K I VP+V
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182
Query: 486 VGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGV 542
+ G+ +N P+ +A L + GV D ID + G P+GPF +LD+ G
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLDT 242
Query: 543 AAATSKEFDKAFPDRSFQSPLVDLLLK----SGRNGKANGKGLYTY 584
A + + +A D + + LLK G+ G A G+G Y Y
Sbjct: 243 AYNITSNWAEATDDENAKK--AAALLKEYIDKGKLGVATGEGFYNY 286
|
Length = 287 |
| >gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 10/220 (4%)
Query: 13 DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
G+ IT NP NA+++ + L A D ++ +VLTG G + F G DI+ F
Sbjct: 19 GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQF 78
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
++ + + +VE + D KP +A + G +GGG+ +A+ C RIAA ++
Sbjct: 79 EESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSR 138
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
G+P LG+ G+ G + L LVG S A ++ ++ + E ++GL+ V +++L
Sbjct: 139 FGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198
Query: 191 KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLA 230
+A IA +R+ R E+LK
Sbjct: 199 TALADYAATIAGNAPLTLRAAKRA--------IAELLKDE 230
|
Length = 269 |
| >gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 6e-30
Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 19/196 (9%)
Query: 15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQKV 73
VAI+TL NPP N + LK E + DV A+V+TG+G +F S G D+N+F
Sbjct: 13 VAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLF--- 69
Query: 74 HGAGDVSLMPDVSVELVVNLIE------DCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
GD V+ E+ E + +AA+ G A+GGGLE A+ C RIA
Sbjct: 70 -ADGD----KAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEE 124
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
+ Q+ LPE ++G++P GGTQ LP LVG A M+L + + + ++GL++ VV
Sbjct: 125 QAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKG 184
Query: 188 ELLKVSRLWALDIAAR 203
E +R AL +A +
Sbjct: 185 E----AREAALALAQK 196
|
Length = 258 |
| >gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 7/201 (3%)
Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
D V +TL N P NAL+ + L EA + DDV +VLTG F G D+
Sbjct: 12 DRVRTLTL-NRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDL--- 67
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
K G + ++ +KP++ A+ G A+ GGLELA+ C IA+ + +
Sbjct: 68 -KELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERAR 126
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+G++PG+G + RLP+ VG+ +A M L + + + + GL+ VV +ELL
Sbjct: 127 FADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELL 186
Query: 191 KVSRLWALDIAARRKPWIRSL 211
+R A IA +R+L
Sbjct: 187 PRARRLAASIAGNNPAAVRAL 207
|
Length = 258 |
| >gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 11/194 (5%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+ GVA I L P NAL ++A L+ F + V+A+VL G G F G D++
Sbjct: 9 DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSEL 66
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
++ AG+ + V + I+ + P++AA+ G +GGGLELA H R+A T
Sbjct: 67 RE-RDAGEG-MHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY 124
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV-TSEEL 189
LPE G+ G GG+ R+PRL+G+++ +MML + ++EG +LGL +V E L
Sbjct: 125 FALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEAL 184
Query: 190 LKVSRLWALDIAAR 203
K A+++A R
Sbjct: 185 DK-----AMELARR 193
|
Length = 255 |
| >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 71/202 (35%), Positives = 100/202 (49%), Gaps = 20/202 (9%)
Query: 13 DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DGVA ITL P N L A L+D F E DDVKA+VLTG GG F G D
Sbjct: 25 DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGD----- 79
Query: 72 KVHGA-GDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
VH G ++ M EL +V + C +PI+AAV+G+ G G LAM
Sbjct: 80 -VHEIIGPLTKMD--MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASD 136
Query: 122 ARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
R+ P + +G+ G LPR++G +A E++ +S+++EEG + G
Sbjct: 137 LRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFF 196
Query: 181 DAVVTSEELLKVSRLWALDIAA 202
+ +V EELL ++ A +AA
Sbjct: 197 NRLVEPEELLAEAQALARRLAA 218
|
Length = 277 |
| >gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 5/192 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ + +EV G+A IT P NA+ + GL + E + ++A+VL G G
Sbjct: 5 TSTDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGD 63
Query: 60 R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
+ F G DI F+ A D ++ + ++ V+ +E + P +AA+ G +GGG +A
Sbjct: 64 KAFVAGTDIAQFRAFSTAED-AVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAA 122
Query: 119 GCHARIAAPKTQLGLP-ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
C RIA P + G P TLG RL L+G ++ +M+ ++ + +EE
Sbjct: 123 ACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAA 182
Query: 178 GLIDAVVTSEEL 189
GL++ VV L
Sbjct: 183 GLVNEVVEDAAL 194
|
Length = 262 |
| >gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 10/203 (4%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
+ V +E V IIT+ P NA+ + GL +E + D+ +LTG GG
Sbjct: 1 MSDEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGT 59
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE-DCKKPIVAAVEGLALGGGLELAMG 119
F G D+ F G+ P + L E +KP++AAVEG AL GG ELA+
Sbjct: 60 FCAGMDLKAF----ARGE---RPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALA 112
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C +AA + GLPE+ G++ GG RLPR + A+E+ L +T+E +LGL
Sbjct: 113 CDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGL 172
Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
++ + + L + A IAA
Sbjct: 173 VNRLTEPGQALDAALELAERIAA 195
|
Length = 254 |
| >gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 9e-26
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 9/197 (4%)
Query: 14 GVAIITLINPPV-NALAIP-IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+ +T+ P NAL+ V L + V+A++LTG G FS G ++ +
Sbjct: 12 HIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMR 71
Query: 72 KVHGAGDVSLMPDV------SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
GA S D+ ++ + + + + P++AAV G A+G G +LA C RIA
Sbjct: 72 ARVGAFGGSPA-DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIA 130
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
+ + + LG+IPG GG LPR++G+++A EM +I + + GL+ VV
Sbjct: 131 SETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVP 190
Query: 186 SEELLKVSRLWALDIAA 202
+++LL +R A IAA
Sbjct: 191 ADQLLPAARALAERIAA 207
|
Length = 266 |
| >gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
MA V EV + GVA+ITL P +NA + A + + A + V+ IVLTG G
Sbjct: 2 MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGR 61
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED----------CKKPIVAAVEGLA 109
F G D+ Q + D DV V N D +KP++AA+ G
Sbjct: 62 GFCAGADMGELQTI-DPSDGRRDTDVR-PFVGNRRPDYQTRYHFLTALRKPVIAAINGAC 119
Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
G GL A+ C R AA + G+I G + LPRLVG + A++++L +++
Sbjct: 120 AGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTF 179
Query: 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206
+EE +LGL++ VV +EL++ + +A D+A P
Sbjct: 180 YAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP 216
|
Length = 272 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 8/190 (4%)
Query: 14 GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
G+A IT IN P +NAL P++ L F+ D VK I+LTG+G F G D+ +
Sbjct: 19 GIATIT-INRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAE 77
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+V GDV DV + V + E C+KPI+ A+ G A+ G E+A+ C +A+ +
Sbjct: 78 EVF-KGDVK---DVETDPVAQM-ERCRKPIIGAINGFAITAGFEIALACDILVASRGAKF 132
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
G+ P +G +Q+L R++G ++A E+ L + +T+E + GL++ VV ELLK
Sbjct: 133 IDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLK 192
Query: 192 VSRLWALDIA 201
+R A I
Sbjct: 193 KAREVAEAII 202
|
Length = 265 |
| >gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-25
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 8/192 (4%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINV 69
+ G+ + L P NA+ ++ GL+ FE+ + + ++L + G F G D+
Sbjct: 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKE 61
Query: 70 FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
++ +V + S+ + +E P +A VEG ALGGGLELA+ C RI +
Sbjct: 62 -RRKMSPSEVQKFVN-SLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEA 119
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
GLPE L +IPG GGTQRLPRLVG S+A E++ + I + E +GL++ V + E
Sbjct: 120 VFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGE- 178
Query: 190 LKVSRLWALDIA 201
+ AL++A
Sbjct: 179 ---AYEKALELA 187
|
Length = 251 |
| >gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 20/213 (9%)
Query: 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDI--- 67
DG+A ITL P +NA + + L + F+ A + D V+A+++TG G F G D+
Sbjct: 11 ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAG 70
Query: 68 -NVF----QKVHGAGDVSLMPDVSVELV------VNL-IEDCKKPIVAAVEGLALGGG-- 113
N F + D D S + V V L I D KP++AAV G A+G G
Sbjct: 71 GNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGAT 130
Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
+ LAM R+A+ + G G++P + LPRLVGL A+E + + ++E
Sbjct: 131 MTLAM--DIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQE 188
Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206
GL+ +V +ELL +R A +IA P
Sbjct: 189 ALDGGLVRSVHPPDELLPAARALAREIADNTSP 221
|
Length = 296 |
| >gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 12/196 (6%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
N + ITL P NA+ + + F +++ ++TG G + FS G+D+
Sbjct: 10 NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDL--- 66
Query: 71 QKVHGAGDVSLMP--DVSVELVVNLIE--DCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
K G+ P D L E D KP++AAV G A GGG ELA+ + A
Sbjct: 67 -KAAAEGE---APDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCA 122
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
LPE LG++P GG RLP+ + + A EM++ + + +EE + G+++ VV
Sbjct: 123 DNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ 182
Query: 187 EELLKVSRLWALDIAA 202
EL+ +R A +
Sbjct: 183 AELMDRARELAQQLVN 198
|
Length = 261 |
| >gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 5e-24
Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 12/190 (6%)
Query: 7 TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
T+E+ G VA +TL P V NA ++A L F + D V+A+VL G G F G
Sbjct: 5 TLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAG 64
Query: 65 FDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
D+N +K+ G D D + L ++ I C KP++A V G A GG+ L C
Sbjct: 65 ADLNWMKKMAGYSDDENRAD-ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDI 123
Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLP---RLVGLSKAIEMMLLSKSITSEEGWKLGL 179
+AA L E+ LG+IP P R +G A L ++ + E +LGL
Sbjct: 124 AVAADHAVFCLSEVRLGLIP----ATISPYVIRAMGERAARRYFLTAERFDAAEALRLGL 179
Query: 180 IDAVVTSEEL 189
+ VV +E L
Sbjct: 180 VHEVVPAEAL 189
|
Length = 262 |
| >gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-24
Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 9/213 (4%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
+ E DG+A IT+ P V NA V + ++A D+ ++LTG G + F
Sbjct: 4 IRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCS 63
Query: 64 GFDINVFQKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
G D QKV G D S + ++V V I C KP++A V G A+GGG L M C
Sbjct: 64 GGD----QKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMC 119
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
IAA + G +G G G+ + R+VG KA E+ L + +++ +GL+
Sbjct: 120 DLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLV 179
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213
+ VV +L K + W +I + IR L
Sbjct: 180 NTVVPLADLEKETVRWCREILQKSPMAIRMLKA 212
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259 |
| >gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 12/208 (5%)
Query: 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
T+E+ D VA +TL P NA+ + L + F + +V+A+VL+G+G FS G
Sbjct: 8 FTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYG 66
Query: 65 FDI----NVFQKVH---GAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLE 115
D+ VF ++ A + + + L +N + DC+KP++AAV+G +GGG++
Sbjct: 67 IDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVD 126
Query: 116 LAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 175
L C R A+ + + E+ LG++ G QRLPR++G E+ L + I + E
Sbjct: 127 LISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAE 186
Query: 176 KLGLIDAVV-TSEELLKVSRLWALDIAA 202
K+GL++ V ++ LL + A +IAA
Sbjct: 187 KIGLVNRVYDDADALLAAAHATAREIAA 214
|
Length = 272 |
| >gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 11/210 (5%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEE-ATSRDDVKAIVLTGNG 58
M +VT++ + GVAI+TL +P V NA++I ++ GL + + + +V+ +VLTG G
Sbjct: 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG 59
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL------VVNLIEDCKKPIVAAVEGLALGG 112
F G N+ + G + D L + + + PIV AV G A G
Sbjct: 60 RGFCTG--ANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGV 117
Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
G+ A+ + A +G++P G T LPRLVG ++A+E+ LL + + +E
Sbjct: 118 GMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAE 177
Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
+ GL++ VV EL+ + A ++A
Sbjct: 178 TALQWGLVNRVVDDAELMAEAMKLAHELAN 207
|
Length = 266 |
| >gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 17/185 (9%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
GVA +T+ N +N L P++ L + DV+ +VL G G + F GG DI
Sbjct: 15 RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74
Query: 71 QKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
+L + + L + P++A + G LGGGLELA C RI
Sbjct: 75 --------ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRI 126
Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
AA Q G+PE+ +G IP LPRL+G ++ ++L ++I + + GL+D VV
Sbjct: 127 AAHDAQFGMPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVV 185
Query: 185 TSEEL 189
EL
Sbjct: 186 PLAEL 190
|
Length = 256 |
| >gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 15/197 (7%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
N V + L P V NA+ P A L D F + D VL G GG F G D+
Sbjct: 10 NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAV 69
Query: 71 Q-----KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
++H +GD + P + ++ KP++AAV G A+ GGLELA+ C R+A
Sbjct: 70 GTGRGNRLHPSGDGPMGPS---RMRLS------KPVIAAVSGYAVAGGLELALWCDLRVA 120
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
G+ GV GGT RLPRL+G S+A++++L + + ++E +GL + VV
Sbjct: 121 EEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVP 180
Query: 186 SEELLKVSRLWALDIAA 202
+ + A ++AA
Sbjct: 181 KGQARAAAEELAAELAA 197
|
Length = 254 |
| >gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 3e-22
Identities = 69/223 (30%), Positives = 108/223 (48%), Gaps = 37/223 (16%)
Query: 14 GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
+A+ITL P +N++A ++ LK+ E + + V+ +VLTG G FS G D K
Sbjct: 19 EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGAD----HK 74
Query: 73 VHGAGDVSLMPDV-----------SVELVVNLIEDCKK---PIVAAVEGLALGGGLELAM 118
G +P V S+EL+ ++I ++ P++AAV G A+GGGL LA+
Sbjct: 75 SAGV-----VPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLAL 129
Query: 119 GCHARIAAPKTQL-------GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS 171
R+A+ GL LG+ + LPR +G S+A E+ML + + +
Sbjct: 130 AADIRVASSSAYFRAAGINNGLTASELGL------SYLLPRAIGSSRAFEIMLTGRDVDA 183
Query: 172 EEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT 214
EE ++GL+ V E+LL A +A +P I RT
Sbjct: 184 EEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRT 226
|
Length = 276 |
| >gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 4e-22
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 6/189 (3%)
Query: 11 GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+ G+A + L PP NAL + + E RDDV A++L G FS G D+
Sbjct: 14 QDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPEL 73
Query: 71 QKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ + A + + +V+ V + KP VAA+ G ALG GL LA+ R++
Sbjct: 74 RTLSAQEADTAARVRQQAVDAVAAI----PKPTVAAITGYALGAGLTLALAADWRVSGDN 129
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
+ G E+ G+ P G RL R G S+A E++ + +EE LGLID +V ++
Sbjct: 130 VKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDD 189
Query: 189 LLKVSRLWA 197
+ + WA
Sbjct: 190 VYDAAAAWA 198
|
Length = 222 |
| >gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-21
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAATSK 548
GF VNR P A LV GV ID+A+R GLP+GPF+L DL G V +
Sbjct: 1 GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60
Query: 549 EFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY 584
+ F DR+++ SPL++ L+++GR G+ GKG Y Y
Sbjct: 61 VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGFYKY 97
|
This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97 |
| >gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-21
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 3 APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
P +E I+T+ P NAL+ ++ + D ++ + D+++ +LTG GG F
Sbjct: 4 GPHALVE-QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAF 62
Query: 62 SGGFDINVFQKVH-------GAGDVSLMPDVSVELVVNLIED--CKKPIVAAVEGLALGG 112
G D+ K G+ D S + L++ KP++AAVEG A+ G
Sbjct: 63 CAGMDLKAATKKPPGDSFKDGSYDPSRID--------ALLKGRRLTKPLIAAVEGPAIAG 114
Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
G E+ G R+A + G+ E + P G RL R + + A +++L + IT+
Sbjct: 115 GTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAA 174
Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
E ++GLI VV + L AL++A
Sbjct: 175 EAKEIGLIGHVVPDGQALDK----ALELAEL 201
|
Length = 263 |
| >gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 3e-21
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 25/196 (12%)
Query: 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
RV++ + DG+A + L P +NAL + L + ++A++L+G GG F
Sbjct: 3 DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFC 61
Query: 63 GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--------------DCKKPIVAAVEGL 108
G D+ V+ P +V+L+ + P++AA+EG+
Sbjct: 62 AGLDV---------KSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGV 112
Query: 109 ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168
GGGL++A+G RIAAP T+L + E G++P GT L LV A E+ ++
Sbjct: 113 CFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARV 172
Query: 169 ITSEEGWKLGLIDAVV 184
++EE +LGL+ V
Sbjct: 173 FSAEEALELGLVTHVS 188
|
Length = 262 |
| >gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 6e-21
Identities = 73/214 (34%), Positives = 103/214 (48%), Gaps = 12/214 (5%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG---RF 61
+T E DG+A IT+ P V NA V + D F +A +V I+LTGNG F
Sbjct: 20 ITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAF 79
Query: 62 SGGFDINVFQKVHGAG----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
G D QKV G D +P ++V + LI KP++A V G A+GGG L
Sbjct: 80 CSGGD----QKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLH 135
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
+ C IAA G +G G G+ L R+VG KA E+ L + +EE +
Sbjct: 136 VVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDM 195
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
GL++ VV +L K + WA ++ A+ +R L
Sbjct: 196 GLVNTVVPHADLEKETVQWAREMLAKSPTALRML 229
|
Length = 282 |
| >gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 3e-20
Identities = 80/284 (28%), Positives = 126/284 (44%), Gaps = 20/284 (7%)
Query: 319 MGSGIATAHILNNIYVVLKEVN-------SEYLLKGIKTIEANVRGLVTRGKLTQDKANN 371
MG GIA A V L + + IE + LV G++ +A+
Sbjct: 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60
Query: 372 ALKMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
L + V+ D D+V EAV E + K++ L + I+A+ TST
Sbjct: 61 VLARIA-VVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFL 119
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + + +R + AH+ +PA++MPL+E+ ++ T V+ L + + I KVPVV G
Sbjct: 120 VTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCG 179
Query: 488 NCTGFAVNR-AFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLP---IGPFQLLDLAGYG 541
G+ V R +++AR +V GV ID AIR FGL +G + +D G
Sbjct: 180 PSPGYIVPRIQALAMNEAAR-MVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCD 238
Query: 542 VAAATSKEFDKAF-PDRSFQSPLVDLLLKSGRNGKANGKGLYTY 584
+ S+ PDR +V ++ GR+G G G Y Y
Sbjct: 239 ILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDY 282
|
Length = 314 |
| >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 4e-20
Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 13/185 (7%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
GVA +TL P +N+ + L++ E RDD +A++LTG G F G D++
Sbjct: 7 AGVARLTLNRPDKLNSFTAEMHLELREALERV-ERDDARALMLTGAGRGFCAGQDLSERN 65
Query: 72 KVHGAGDVSLMPDV--SVEL----VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
G PD+ ++E +V + P+V AV G+A G G LA+ C +A
Sbjct: 66 PTPGG-----APDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLA 120
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
A + +G+IP GGT LPRLVG ++A+ + +L + + + GLI VV
Sbjct: 121 AESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVD 180
Query: 186 SEELL 190
L+
Sbjct: 181 DAALM 185
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 |
| >gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 14/210 (6%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M+A ++ G ++TL NP NAL + A + A ++A+VLTG GG
Sbjct: 1 MSAELLSRREG--STLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGG 58
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGG 113
F G ++N + + P V S++ + + I KP++AAVEG A G G
Sbjct: 59 FFCAGGNLNRL-----LENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAG 113
Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
LA+ C +AA + + + +G+ P GG+ L R + A E++L K I++E
Sbjct: 114 FSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAER 173
Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
LG+++ + + L + A +AA
Sbjct: 174 LHALGVVNRLAEPGQALAEALALADQLAAG 203
|
Length = 260 |
| >gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 4e-20
Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 10/229 (4%)
Query: 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
V ++V +DGVA+IT+ +P NA+ + A L+ A + DV A+V+TG G F
Sbjct: 2 MDPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAF 60
Query: 62 SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
G D+ G + + + + C P +AAV G A+G GL LA+
Sbjct: 61 CAGADLTALGAAPGRPAEDGLRRIYDGFLA--VASCPLPTIAAVNGAAVGAGLNLALAAD 118
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
RIA PK LG+ PG G T L R VG A +L +E + GL
Sbjct: 119 VRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIR----SLHRTDKLGSLSEAREV 226
V ++ + + A AA + + S+ T L + A E
Sbjct: 179 MVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEF 225
|
Length = 249 |
| >gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 5e-20
Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 20/212 (9%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
+T G+A +T+ PPVNAL L D A + D + +VL G F+ G
Sbjct: 3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGV 62
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVN--------LIEDCKKPIVAAVEGLALGGGLELA 117
DI Q P + + N + +C P++AAV G LGGG+ L
Sbjct: 63 DIKELQAT---------PGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLV 113
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
+A+ GLPE+ G + G L RLV + + +IT+ E
Sbjct: 114 GNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHF 170
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209
G ++ VV ++L + + A IAA+ IR
Sbjct: 171 GSVEEVVPRDQLDEAALEVARKIAAKDTRVIR 202
|
Length = 249 |
| >gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 1e-19
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 12/195 (6%)
Query: 21 INPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV----- 73
+N P NAL++ +V I+L+G G F G D+ +
Sbjct: 23 LNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS 82
Query: 74 ---HGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
G L + ++ + IE C+KP++AA+ G +GGG+++ C R +
Sbjct: 83 SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDA 142
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EE 188
+ E+ L + G QRLP +VG A+E+ L + + E +LGL+ V S E+
Sbjct: 143 FFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKED 202
Query: 189 LLKVSRLWALDIAAR 203
L + RL A IAA+
Sbjct: 203 LDEGVRLIAEGIAAK 217
|
Length = 275 |
| >gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 14/210 (6%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
M V + +G+A +T+ V NA + + L + F+ K ++LTG
Sbjct: 1 MMMKVVELREVEEGIAQVTM-QDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP 59
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
F+ G + G + + + +L +C P++AA++G A+GGGL L +
Sbjct: 60 NYFATGGTQEGLLSLQ-TGKGT----FTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGL 114
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
+ + ++ + G PG G T LP +GL+ EM+L ++ E K G
Sbjct: 115 YADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRG 174
Query: 179 LIDAVVTSEELLKVSRLWALDIAAR--RKP 206
+ V+ E+L+ AL++A KP
Sbjct: 175 VPFPVLPRAEVLEK----ALELARSLAEKP 200
|
Length = 249 |
| >gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 67/193 (34%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
DG+A IT+ P V NA V + D F +A D++ I+LTG G + F G D
Sbjct: 21 DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGD---- 76
Query: 71 QKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
QKV G G D +P ++V + LI C KP++A V G A+GGG L + C IAA
Sbjct: 77 QKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAAD 136
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
G +G G G L R+VG KA E+ L + ++E +GL++ VV
Sbjct: 137 NAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196
Query: 188 ELLKVSRLWALDI 200
+L K + W ++
Sbjct: 197 DLEKETVRWCREM 209
|
Length = 273 |
| >gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 2e-17
Identities = 66/200 (33%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
+G+A I IN P +NA L ++A + IVL G G + F G D
Sbjct: 10 NGIAWIM-INRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD--- 65
Query: 70 FQKVH-----GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
Q H G G + L +E + + I D KP++A V+G A+GGG L C I
Sbjct: 66 -QSTHDGGYDGRGTIGL----PMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTI 120
Query: 125 AAPKTQLGLPELTLG-VIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
A+ K Q G +G V PG+ GT L R+VG KA E+ L + T++E +GL++AV
Sbjct: 121 ASEKAQFGQVGPKVGSVDPGY-GTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAV 179
Query: 184 VTSEELLKVSRLWALDIAAR 203
V ++L + W +I +
Sbjct: 180 VPHDQLDAEVQKWCDEIVEK 199
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256 |
| >gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 4e-17
Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 3/186 (1%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
+G+A IT+ P NA V L+ F +A V I+LTG G + F G D V
Sbjct: 75 EGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVR 134
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
K G ++V + I KP++A V G A+GGG L M C IAA
Sbjct: 135 GK-DGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV 193
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
G +G G+ + RLVG KA EM L++ T+ E K+GL++ VV +EL
Sbjct: 194 FGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELE 253
Query: 191 KVSRLW 196
+ W
Sbjct: 254 GETVKW 259
|
Length = 327 |
| >gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 8e-17
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 15/210 (7%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
M + + + GVA +TL N P +N+ + L++ ++ D +A++LTG G
Sbjct: 1 MMYETILLAI-EAGVATLTL-NRPDKLNSFTREMHRELREALDQV-EDDGARALLLTGAG 57
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPD--VSVEL----VVNLIEDCKKPIVAAVEGLALGG 112
F G D+ G MPD S+E +V + P++AAV G+A G
Sbjct: 58 RGFCAGQDLADRDVTPGGA----MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGA 113
Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
G LA+ C +AA + +G++P GGT LPRLVG+++A+ + LL + +++E
Sbjct: 114 GANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAE 173
Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
+ + GLI VV L ++ A +A
Sbjct: 174 QAEQWGLIWRVVDDAALADEAQQLAAHLAT 203
|
Length = 262 |
| >gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 65/230 (28%), Positives = 90/230 (39%), Gaps = 36/230 (15%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M V EV +A ITL P NA ++ L F A + D V+ IVL G G
Sbjct: 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGK 59
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----------------------IED 96
FS G D+ D PD L + D
Sbjct: 60 HFSAGHDLGSGTPGR---DRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRD 116
Query: 97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---FGGTQRLPRL 153
KP +A V+G + GGL LA C +A+ P + +G IPG F L
Sbjct: 117 LPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMG-IPGVEYFAHPWEL--- 172
Query: 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
G KA E++ +T++E +LG+++ VV +EL + A IAA
Sbjct: 173 -GPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAM 221
|
Length = 288 |
| >gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-16
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 4/191 (2%)
Query: 14 GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
GV +I P NA+ + A + + A + D ++A V G G FS G D+ F
Sbjct: 15 GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLA 74
Query: 73 VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
G S ++ ++ ++ L E +KPIV+ V+GLA+G G + + C A+P++
Sbjct: 75 A-AMGGTSFGSEI-LDFLIALAE-AEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFR 131
Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
P + L ++P G + PRL+G +A ++ L + ++E + GLI +V E +
Sbjct: 132 TPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAE 191
Query: 193 SRLWALDIAAR 203
+ A ++AA+
Sbjct: 192 TLKAAEELAAK 202
|
Length = 251 |
| >gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 11/204 (5%)
Query: 4 PRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
P + + GV I L P NA + L D + + DV+ +++ G G FS
Sbjct: 11 PALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFS 70
Query: 63 GGFDINVFQKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
G D+ + +++ A D + V E LV N+I +C KPIV+A+ G A+G GL A+
Sbjct: 71 AGGDLALVEEM--ADDFEVRARVWREARDLVYNVI-NCDKPIVSAIHGPAVGAGLVAALL 127
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
IAA ++ LGV G P L G++KA +LL + ++ EE ++GL
Sbjct: 128 ADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGL 187
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ V +ELL AL++A R
Sbjct: 188 VSLAVDDDELLPK----ALEVAER 207
|
Length = 268 |
| >gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 4e-16
Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 33/251 (13%)
Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
+ K A IGGG++G G A +L I V + + + E I + AN
Sbjct: 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERI-IGEVLAN------------ 49
Query: 367 DKANNALKMLKGV-------LDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACP 414
A A ML L + D + E+V E + LK+++ +E++ A
Sbjct: 50 --AERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAAR 107
Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
P ++ ++TS + + E + +R+ AH ++P +++PL+E+V +TS + I
Sbjct: 108 PDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKE 167
Query: 475 VGKIIKKVPVVVGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGL---P 528
+ + I PV + F +R + A LV G+ ID IR SFGL
Sbjct: 168 ILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQ 227
Query: 529 IGPFQLLDLAG 539
+G F+ +AG
Sbjct: 228 MGLFETYRIAG 238
|
Length = 495 |
| >gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 5e-16
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 14/184 (7%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DGVA ITL + VNAL+ ++ L ++A DD +V+TG G FSGGFD+ V
Sbjct: 10 EDGVATITLDDGKVNALSPAMIDALNAALDQA--EDDRAVVVITGQPGIFSGGFDLKVMT 67
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
GA + L L+ KP++ A G A+ G L + RI +
Sbjct: 68 S--GAQAAIALLTAGSTLARRLLSH-PKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFK 124
Query: 131 LGLPELTLG-VIPGFG---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
+GL E+ +G +P RL +A+ + ++ EE G +D VV
Sbjct: 125 IGLNEVAIGMTMPHAAIELARDRLTP-SAFQRAV---INAEMFDPEEAVAAGFLDEVVPP 180
Query: 187 EELL 190
E+LL
Sbjct: 181 EQLL 184
|
Length = 229 |
| >gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 9e-16
Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 20/249 (8%)
Query: 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK 368
VA+IG GL+G A V L + + I + L L +
Sbjct: 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEA 62
Query: 369 ANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
+ L ++ ++ D D V E+ E++ LK+ +F+EL+ PPH ILA++TS +
Sbjct: 63 PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALL 122
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ E + ++R + AH +P +++P++E+V T+ + + + + PV +
Sbjct: 123 ASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLR 182
Query: 488 -NCTGFAVNRAFFPYSQSARL-----LVSLGV-DVFRIDSAIRSFGLP-----IGPFQLL 535
GF +NR Q A L LV+ GV V ID+ IR GL +GPF+ +
Sbjct: 183 REIDGFVLNRL-----QGALLREAFRLVADGVASVDDIDAVIRD-GLGLRWSFMGPFETI 236
Query: 536 DL-AGYGVA 543
DL A GVA
Sbjct: 237 DLNAPGGVA 245
|
Length = 308 |
| >gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 7 TMEVGND--GVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
T+ + D GVA +TL P NAL+ ++A L + V+ +VLTG G F
Sbjct: 5 TIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCA 64
Query: 64 GFDINVFQ---------KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
G D+ + ++ A +++M + + D KP++ ++G A GGG+
Sbjct: 65 GGDLGWMRAQMTADRATRIEEARRLAMM--------LKALNDLPKPLIGRIQGQAFGGGV 116
Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
L C IA + GL E LG+IP + R +G + A + + ++ +EE
Sbjct: 117 GLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEA 175
Query: 175 WKLGLIDAVVTSEEL 189
+LGL+ VV +E L
Sbjct: 176 VRLGLLSRVVPAERL 190
|
Length = 262 |
| >gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 3/177 (1%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
VA I L P NAL P++ L +E + +VL GNG FS G DI +
Sbjct: 13 EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMM 71
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+ + + E+VV L K ++A+ G A G GL +A+ IA +
Sbjct: 72 LSSNDESKFDGVMNTISEIVVTLY-TMPKLTISAIHGPAAGLGLSIALTADYVIADISAK 130
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
L + + +G+IP GG L + VG +KA +++ K +++ E LGLID V+ +
Sbjct: 131 LAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGD 187
|
Length = 260 |
| >gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-15
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 9/200 (4%)
Query: 6 VTMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
V+ E G V +I L P NA ++ L E + D+++ VL +G F+
Sbjct: 1 VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTA 58
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
G D+ AG P+ ++ + KP+V AV+G L G+EL +
Sbjct: 59 GLDLADVAPKLAAG-GFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIV 117
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
+AA T+ E+ G++P G T R P+ G A+ +L ++E +LGL+ V
Sbjct: 118 VAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEV 177
Query: 184 VTSEELLKVSRLWALDIAAR 203
V E L+ A+++A R
Sbjct: 178 VPPGEQLER----AIELAER 193
|
Length = 255 |
| >gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 4e-15
Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 21/233 (9%)
Query: 20 LINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79
L P N + ++A L E ++A++L G FS GA
Sbjct: 16 LARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFS-----------FGASVA 64
Query: 80 SLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL 133
MPD ++ +L + D PI+ AV G LGGGLE+A + AAP +LG
Sbjct: 65 EHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQ 124
Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193
PE+ LGV + LP +G A +++ +SI EG ++GL +AV E +
Sbjct: 125 PEIVLGVFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPENAAL- 182
Query: 194 RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA 246
+ A +R R +LG + K+A ++A M H A
Sbjct: 183 AWFDEHPAKLSASSLRFAVRAARLGMNERVKA--KIAEVEALYLEELMATHDA 233
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251 |
| >gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-15
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 14/196 (7%)
Query: 9 EVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
V DG V I L P NAL + L++ +A + +AIVLTG G F G D
Sbjct: 3 GVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGAD 61
Query: 67 INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
++ G PD +E++ I+ P++AA+ G A+G GL+LAM C R+ A
Sbjct: 62 LS------GDVYADDFPDALIEMLHA-IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVA 114
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
P+ P G+ +RL LVG +A M+L ++ +T+E+ G+ + + T
Sbjct: 115 PEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT- 173
Query: 187 EELLKVSRLWALDIAA 202
L ++ WA +IA
Sbjct: 174 ---LADAQAWAAEIAG 186
|
Length = 243 |
| >gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 8e-15
Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
D +A +TL P V N IP+ + + A V+ +++ NG FS G D+ +
Sbjct: 10 DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMK 69
Query: 72 KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ DV + + ELV + I+ KP++ V+G G +A+ IA+ K
Sbjct: 70 RAVDEDDVQSLVKI-AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK 128
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
T+ + +G+ P GG L R +GL++A + + +++T+E+ + G + V SE+
Sbjct: 129 TKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188
Query: 189 LLKVSR 194
L K
Sbjct: 189 LEKTCE 194
|
Length = 255 |
| >gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
AP + E DGVA +TL P NAL+ ++A L+ + + V+ +VL G
Sbjct: 8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK 66
Query: 60 RFSGGFDINVFQKVHGAGDVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
F G D+ + G L S V+ I +P++A V G+A G +L
Sbjct: 67 AFCAGHDLKEMRAARGLAYFRALFARCSR--VMQAIVALPQPVIARVHGIATAAGCQLVA 124
Query: 119 GCHARIAAPKTQLGLPELTLGVI---PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 175
C +AA + +P + +G+ P L R V +A+EM+L + I +
Sbjct: 125 SCDLAVAADTARFAVPGVNIGLFCSTPMVA----LSRNVPRKQAMEMLLTGEFIDAATAR 180
Query: 176 KLGLIDAVVTSEELLKVSRLWALDIAAR 203
+ GL++ VV ++ L A IAA+
Sbjct: 181 EWGLVNRVVPADALDAAVARLAAVIAAK 208
|
Length = 266 |
| >gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 34/83 (40%), Positives = 47/83 (56%)
Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161
+A V+G ALGGG E A+ H IA ++G PE+ + PG G L R VG A E
Sbjct: 125 IALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEE 184
Query: 162 MMLLSKSITSEEGWKLGLIDAVV 184
++L K T+EE +GL+D +V
Sbjct: 185 LILSGKLYTAEELHDMGLVDVLV 207
|
Length = 287 |
| >gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 7e-14
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 7/193 (3%)
Query: 13 DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINV 69
+ +A IT NP NAL+ ++ L + +R +++ ++L G +S G DI+
Sbjct: 12 NKIATITFNNPAKRNALSKVLIDDLMQALSDL-NRPEIRVVILRAPSGSKVWSAGHDIH- 69
Query: 70 FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
++ G L D + ++ +I+ KP++A VEG GG EL M C IAA +
Sbjct: 70 --ELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTS 127
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
+ LGV G G EM + IT++ +G+++ VV EEL
Sbjct: 128 TFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEEL 187
Query: 190 LKVSRLWALDIAA 202
+ A I+
Sbjct: 188 EDFTLQMAHHISE 200
|
Length = 261 |
| >gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
V V + GVA +TL +P NAL+ +VA L D A + V+A+VLT GG
Sbjct: 3 PVDTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGG 61
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
F G D++ + G GD + L I + KP++AA++G GG L
Sbjct: 62 TFCAGADLS--EAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGL 119
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153
C +A P++ L E +GV P LPRL
Sbjct: 120 VGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRL 156
|
Length = 260 |
| >gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 6 VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
V +EV DG+A +TL N P NA++ + + D + DD +VLTG G +S
Sbjct: 10 VKVEV-EDGIAWVTL-NRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSA 67
Query: 64 GFDIN-VFQKVHGAGDVSLMPDVSVELVVNLIEDC----------KKPIVAAVEGLALGG 112
G D+ F++ ++ L + + +KP +A V G GG
Sbjct: 68 GMDLKEYFRETDAQPEI---------LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGG 118
Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
G + C IAA + Q GL E+ G+ PG G ++ + VG A+ ++ ++ T
Sbjct: 119 GFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGR 178
Query: 173 EGWKLGLIDAVVTSEEL 189
+ ++GL++ V +L
Sbjct: 179 KAAEMGLVNESVPLAQL 195
|
Length = 275 |
| >gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 30/209 (14%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
+T EV +A ITL P NA+ L+ E A V I+++G G F G
Sbjct: 12 MTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAG 70
Query: 65 FDINVFQKVHGAGDVSLMPDVSVELVVNLIED-----------------------CKKPI 101
+D++ + + +G + V +L +D KP
Sbjct: 71 YDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPT 130
Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGFGGTQRLPRLVGLSKAI 160
VA V G + GG ++A+ C IAA ++G P + GV RL G +A
Sbjct: 131 VAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRL----GPQRAK 186
Query: 161 EMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
++ IT + + GL V EEL
Sbjct: 187 RLLFTGDCITGAQAAEWGLAVEAVPPEEL 215
|
Length = 302 |
| >gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 1e-12
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 14 GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
GV +ITL N P +NAL++ ++ + + D V A+V+ G G R F G DI
Sbjct: 12 GVGVITL-NRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRAL 70
Query: 71 QKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ AGD E +N LI KP +A ++G+ +GGG+ ++ RI +
Sbjct: 71 YEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER 130
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVG 155
T++ +PE +G P GGT L R G
Sbjct: 131 TKMAMPETGIGFFPDVGGTYFLSRAPG 157
|
Length = 342 |
| >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+G AI+T+ P +NAL + + K ++ + ++ +++TG G F G D++ F
Sbjct: 8 EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEF- 66
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
A D ++ + ++ I K ++A+ G+ G + +A+ + A+ +
Sbjct: 67 ----APDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKF 122
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
LG+ G L +L G + E+++L T+EE + GL+
Sbjct: 123 VTAFQRLGLASDTGVAYFLLKLTG-QRFYEILVLGGEFTAEEAERWGLL 170
|
Length = 248 |
| >gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 29/233 (12%)
Query: 7 TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
T+ V G V + L P N + ++A D + +VL G F G
Sbjct: 5 TIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRC--EHAATIVVLEGLPEVFCFG 62
Query: 65 FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK---KPIVAAVEGLALGGGLELAMGCH 121
D F + D + E + +L +A V G GG+
Sbjct: 63 AD---FSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD 119
Query: 122 ARIAAPKTQLGLPELTLGVIPG----FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
IA L EL G+IP F L R +G KA M L+++ +T+++ +
Sbjct: 120 IVIADETAPFSLSELLFGLIPACVLPF-----LIRRIGTQKAHYMTLMTQPVTAQQAFSW 174
Query: 178 GLIDAVVT-SEELLK--VSRLWALDIAA--RRKPWIRSLHRTDKLGSLSEARE 225
GL+DA S+ LL+ + RL L+ AA R K + +L +++ AR
Sbjct: 175 GLVDAYGANSDTLLRKHLLRLRCLNKAAVARYKSYASTL-----DDTVAAARP 222
|
Length = 255 |
| >gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 25/204 (12%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
A P V ++ G+A++ L PVN++ + + L D + V+ +V R
Sbjct: 8 GATPGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRR 67
Query: 61 --FSGGFDINVFQKVHGAGDVSLMPDVSVE-----------LVVNLIEDCKKPIVAAVEG 107
F+ G DI +++ P S +V L+ + V A+ G
Sbjct: 68 DVFTAGNDIA---ELYA-------PKTSAARYAEFWLTQTTFLVRLLRS-RLATVCAIRG 116
Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKAIEMMLLS 166
GG +++ C R+ + +GL E+ LG+ +P F + R++ A ++L
Sbjct: 117 ACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRG 176
Query: 167 KSITSEEGWKLGLIDAVVTSEELL 190
+ + E +LGLID VV + L+
Sbjct: 177 RLVRPAEAKQLGLIDEVVPAAALM 200
|
Length = 278 |
| >gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
V +ITL P N +++ +V+ L + E+ D V+ I++ G G FS G D+ +F
Sbjct: 19 GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFY 78
Query: 72 KVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
D D +E+V + I KK VA V GL +GGG L + R+
Sbjct: 79 D-GRESD-----DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVV 132
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVG 155
KT PE ++G G + L RL G
Sbjct: 133 TEKTVFATPEASVGFHTDCGFSYILSRLPG 162
|
Length = 379 |
| >gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 66/229 (28%), Positives = 91/229 (39%), Gaps = 42/229 (18%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG------GR-FSGG 64
G I P V NA V L + A DV ++LTGNG G F G
Sbjct: 33 QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSG 92
Query: 65 FDINVFQKVHG-------AGDVSLMPDVS-------VELVVNLIEDCKKPIVAAVEGLAL 110
D Q++ G GD + D + +E V LI K ++A V G A
Sbjct: 93 GD----QRIRGRDGYQYAEGDEADTVDPARAGRLHILE-VQRLIRFMPKVVIAVVPGWAA 147
Query: 111 GGG--------LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162
GGG L LA HAR +G G+G + L R VG A E+
Sbjct: 148 GGGHSLHVVCDLTLASREHARFKQTDADVG------SFDGGYG-SAYLARQVGQKFAREI 200
Query: 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
L ++ ++EE +G ++AVV EL + WA +I + +R L
Sbjct: 201 FFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRML 249
|
Length = 302 |
| >gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 17/242 (7%)
Query: 308 VRKVAVIGGGLMGSGI---ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
++ A IG G++GSG A AH L+ + L + AN + R L
Sbjct: 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV----ANAWPALERQGL 62
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
+ L+ + + D D + E+ E LK ++ + +A P I+A++TS
Sbjct: 63 APGASPARLRFVATIEAC--VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTS 120
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
+ + + +R + H F+P +++PL+E++ ERT+ + + M + + + P+
Sbjct: 121 GLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPL 180
Query: 485 -VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPI-----GPFQLLDL 537
V GF +R + A LV+ GV ID AIR FG I G F L
Sbjct: 181 HVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR-FGAGIRWSFMGTFLTYTL 239
Query: 538 AG 539
AG
Sbjct: 240 AG 241
|
Length = 321 |
| >gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 8e-09
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 24/214 (11%)
Query: 16 AIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKV 73
A I L NP N+ +V + F A+S DV A+V T G + F G + + +
Sbjct: 39 AWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEY 98
Query: 74 HGAGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
+ AG+ + L D+ V+ I C KP++ V G+ +GGG E+ M IA
Sbjct: 99 Y-AGNPQEYRQYMRLFNDM-----VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQ 152
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
G G P G T LP ++G +A+ L + ++ + +LG+I VV +
Sbjct: 153 DLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA 212
Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 220
LKV + P + + D+ G +
Sbjct: 213 ---LKVDGKFV------ANPLVVTDRYLDEFGRI 237
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360 |
| >gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 1e-08
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
MA+ + V I+TL P +NAL+ +++ L F VK ++L G+G
Sbjct: 5 MASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGR 64
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELA 117
F G D+ + G+ L + S E ++N ++ K V+ + G+ +GGG ++
Sbjct: 65 AFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVS 124
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156
+ RIA T +PE LG+ P G + L RL G
Sbjct: 125 VHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF 163
|
Length = 381 |
| >gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 20 LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77
++N P +NAL IP+VA LK +E D+ +++ G+G F G D+ + G
Sbjct: 56 ILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEG 115
Query: 78 DVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE 135
+V L V L KP VA ++G+ +G G +++ R+ KT PE
Sbjct: 116 NVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPE 175
Query: 136 LTLGVIPGFGGTQRLPRLVG 155
+ +G P G + L RL G
Sbjct: 176 VQMGFHPDAGASYYLSRLPG 195
|
Length = 407 |
| >gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 51 AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
++ T G FS GFD+ Q A + + +V + P +AAV G A
Sbjct: 47 VLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHAS 106
Query: 111 GGGLELAMGCHARIAAPKTQ--LGLPELTLG-VIPGFGGTQRLPRLVGLSKAI------- 160
G LA+ H + K + L + E+ +G +P + L +A
Sbjct: 107 AAGFILAL-SHDYVLMRKDRGVLYMSEVDIGLPLP--------DYFMALLRAKIGSPAAR 157
Query: 161 -EMMLLSKSITSEEGWKLGLIDAVVTSEE 188
+++L + +T+EE ++G++D+ S E
Sbjct: 158 RDVLLRAAKLTAEEAVEMGIVDSAHDSAE 186
|
Length = 239 |
| >gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 57/204 (27%), Positives = 80/204 (39%), Gaps = 43/204 (21%)
Query: 13 DGVAIITLINPP-VNALAIPIVAGLKDKFEEA---TSRD-DVKAIVLTGNGGRFSGGFDI 67
VA ITL P +N IV + D+ E A RD D+K IVL G G FSGG+D
Sbjct: 13 GPVATITLNRPEQLNT----IVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDF 68
Query: 68 NVFQKVHGAG----DVSLMPD-----------VSVELV-----VNLIEDCKKPIVAAVEG 107
G G ++M D V+ I KP++A V G
Sbjct: 69 -------GGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHG 121
Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTL--GVIPGFGGTQRLPRLVGLSKAIEMMLL 165
+GG + A+ IA+ +G P + + G L RL L+K L
Sbjct: 122 WCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMW----LYRL-SLAKVKWHSLT 176
Query: 166 SKSITSEEGWKLGLIDAVVTSEEL 189
+ +T + + LI+ V E L
Sbjct: 177 GRPLTGVQAAEAELINEAVPFERL 200
|
Length = 298 |
| >gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Query: 7 TMEVGND--GVAIITLINPPVN-ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
T+E+ D G A + L N A ++ L ++ S ++ ++L G G FS
Sbjct: 6 TIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSA 65
Query: 64 GFDINVFQKVHGAGDVSLMPDVS--VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
G D+ Q+ + + D EL+ NL K P +A V+G A GG L L C
Sbjct: 66 GADLAWMQQSADLDYNTNLDDARELAELMYNLYR-LKIPTLAVVQGAAFGGALGLISCCD 124
Query: 122 ARIAAPKTQLGLPELTLGVIP 142
I A Q L E+ +G+ P
Sbjct: 125 MAIGADDAQFCLSEVRIGLAP 145
|
Length = 265 |
| >gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 623 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 682
+V +L P++NE+ R++EEG V D+D A LG+ P G +D VG + Y
Sbjct: 3 VVNRLLAPLLNEAIRLVEEG-VATPEDIDAAMRLGLGLPM---GPFELSDLVGLDVGYHI 58
Query: 683 LKKWSQLYGN-FFKPSRFLEERATKG 707
L+ ++ +G+ ++PS LE+ G
Sbjct: 59 LEVLAEEFGDRAYRPSPLLEKLVEAG 84
|
This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97 |
| >gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Query: 23 PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82
P +NAL + L+ ++ ++ +++ G+G F G DI + G
Sbjct: 56 PALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGS---- 111
Query: 83 PDVSVELV------VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL 136
PD E + L+ KP VA + G+ +GGG +++ R+A +T PE
Sbjct: 112 PDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPET 171
Query: 137 TLGVIPGFGGTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
+G P G + L L G L + + + L ++ E GL + SEE+
Sbjct: 172 IIGFHPDAGASFNLSHLPGRLGEYLGLTGL--KLSGAEMLACGLATHYIRSEEI 223
|
Length = 401 |
| >gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 92 NLIEDCKK----PIVAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGF 144
N IED + +AAV G GGG ELA+ C + + + LPE+ LGV+PG
Sbjct: 109 NGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGT 168
Query: 145 GGTQRL--PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
GG R+ R V A + + + + + L+D VV + A ++AA
Sbjct: 169 GGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAA 228
Query: 203 R 203
+
Sbjct: 229 Q 229
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546 |
| >gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 102 VAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGFGGTQRL 150
+AAV G GGG ELA+ C + + + LPE+ LGV+PG GG R+
Sbjct: 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRV 178
|
Length = 550 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 100.0 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 100.0 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 100.0 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 100.0 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 100.0 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 100.0 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 100.0 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 100.0 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 100.0 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 100.0 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 100.0 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 100.0 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 100.0 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 100.0 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 100.0 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 100.0 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 100.0 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 100.0 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 100.0 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 100.0 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 100.0 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 100.0 | |
| PLN02921 | 327 | naphthoate synthase | 100.0 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 100.0 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 100.0 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 100.0 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 100.0 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 100.0 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 100.0 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 100.0 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 100.0 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 100.0 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 100.0 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 100.0 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 100.0 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 100.0 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 100.0 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| KOG1684 | 401 | consensus Enoyl-CoA hydratase [Lipid transport and | 99.97 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.93 | |
| PF00725 | 97 | 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal | 99.9 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.87 | |
| PF00725 | 97 | 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal | 99.86 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.84 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.77 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.76 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.76 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.75 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.75 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.75 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.73 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.73 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.71 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.7 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.69 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.68 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.68 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.64 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.63 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.62 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.6 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.59 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 99.59 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.58 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.57 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.57 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.55 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.55 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.51 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.51 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.5 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.49 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.49 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.48 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.47 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.46 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.46 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.46 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.45 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 99.44 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 99.43 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.42 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.42 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.41 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.41 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 99.39 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.39 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.38 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.38 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.38 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.38 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.36 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.33 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 99.32 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.32 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.3 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.3 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.3 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.3 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.28 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.27 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.27 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.26 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.25 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.25 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.25 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.24 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.23 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.23 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.18 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.18 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.18 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 99.17 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.16 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.13 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.11 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.11 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.09 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.09 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.07 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.05 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.05 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.04 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.03 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.02 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.99 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.99 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.95 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.95 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.95 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.94 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.92 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.91 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.89 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.87 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.87 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.85 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.83 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.75 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 98.71 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.62 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.58 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.56 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.55 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.54 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.53 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.53 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.52 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 98.51 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.47 | |
| PRK10949 | 618 | protease 4; Provisional | 98.46 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.45 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 98.43 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 98.42 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.36 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.36 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.31 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.31 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 98.28 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.28 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.27 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.26 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.19 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.17 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.17 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.12 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.12 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.09 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.07 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.07 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 98.06 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 98.06 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.05 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.02 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 98.02 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.01 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 98.0 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.98 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 97.97 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 97.97 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 97.97 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.96 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.89 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.88 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 97.87 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 97.85 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.85 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.84 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 97.83 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 97.83 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.8 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.79 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 97.78 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.78 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 97.76 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 97.76 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.75 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.73 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 97.72 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 97.71 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 97.7 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.69 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.67 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 97.66 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.64 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.64 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 97.64 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.63 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.62 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.59 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.56 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.55 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 97.54 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.51 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.51 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.49 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.49 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.49 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 97.48 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.46 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.44 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.43 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.43 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 97.43 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.42 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 97.41 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 97.41 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.34 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.33 | |
| PLN00106 | 323 | malate dehydrogenase | 97.33 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 97.32 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 97.3 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.3 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 97.3 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.29 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.29 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.28 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 97.28 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.27 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.25 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 97.25 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.24 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.23 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.22 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 97.21 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.21 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.17 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.17 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.15 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.09 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.09 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.08 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.05 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.05 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.04 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 97.03 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.0 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 96.98 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 96.98 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.98 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.97 | |
| PRK10949 | 618 | protease 4; Provisional | 96.92 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 96.92 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.92 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.9 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.9 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.86 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 96.84 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.84 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 96.82 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.82 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.8 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.8 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.78 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 96.78 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.74 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.72 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.7 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 96.63 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.63 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.63 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.62 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.6 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.59 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.58 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 96.56 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 96.48 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.48 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.46 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.43 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.43 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.42 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.41 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 96.38 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.37 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.33 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 96.32 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.32 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.31 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.3 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.26 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.21 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.21 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.16 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.16 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.15 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.14 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.12 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.09 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.04 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.0 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 95.99 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.97 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 95.97 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 95.96 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.93 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.92 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 95.85 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.82 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 95.78 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 95.74 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 95.73 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.67 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.64 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.61 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.59 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 95.58 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 95.56 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.56 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 95.49 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.48 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 95.42 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.4 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 95.39 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 95.38 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.38 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.38 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.36 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 95.32 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 95.22 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.22 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 95.21 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.2 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.13 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.05 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.05 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.0 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.0 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.88 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 94.88 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 94.84 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 94.82 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 94.73 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 94.73 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 94.72 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 94.69 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.66 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.66 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.54 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 94.51 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 94.51 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.49 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.48 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 94.4 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.34 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 94.34 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.32 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.32 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 94.31 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.3 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.3 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.26 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.24 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 94.24 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.2 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.09 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 94.07 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 94.04 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.03 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.01 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 93.99 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 93.96 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.89 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 93.86 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.81 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 93.79 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.75 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 93.7 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.7 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 93.63 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.6 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 93.58 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 93.58 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 93.49 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 93.48 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.39 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.39 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 93.39 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.37 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.23 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 93.21 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 93.2 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.18 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 93.18 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 93.08 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 93.06 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.05 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.04 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.04 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 93.03 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 93.03 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 92.99 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 92.97 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.96 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 92.93 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 92.92 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 92.91 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 92.89 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.88 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 92.81 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.77 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.76 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 92.75 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 92.71 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 92.71 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 92.7 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 92.67 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 92.65 |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-130 Score=1137.86 Aligned_cols=698 Identities=34% Similarity=0.547 Sum_probs=619.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCcccCCCCchhhhhccCCC
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~v-vl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (733)
|+++++.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+| |+||.|++||+|+|++++.......
T Consensus 10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~ 88 (737)
T TIGR02441 10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ 88 (737)
T ss_pred CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence 6788899998 8899999999995 6999999999999999999999999975 5699999999999999986421111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCccccCCCCCChhhhhhhccccC
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
....+....++++ .+|.++||||||+|||+|+|||++|+|+||||||+++ ++|++||+++|++|++|++++|||++|
T Consensus 89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 1222223345666 6799999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCc-------------chHHHHHHHHHHHHHccCchhhhhhhccCCCCC--c
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGS--L 220 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~--~ 220 (733)
..+|++|+++|++++|+||+++||||+|+|+ +++.+.|.+++.+++..+....+......+... .
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM 247 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence 9999999999999999999999999999986 557888888888876543221110000011100 0
Q ss_pred ---HHHHHHHHHHHHH-HHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 221 ---SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 221 ---~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
......+..++.+ .++++++||||.+++++|+.+...+++++++.|++.|.+++.|++++++++.|+.+|..++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~ 327 (737)
T TIGR02441 248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK 327 (737)
T ss_pred ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence 1122344444444 457888899999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcc
Q 004726 297 NVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (733)
Q Consensus 297 ~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 376 (733)
. ...++++++|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|
T Consensus 328 ~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 403 (737)
T TIGR02441 328 F----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL 403 (737)
T ss_pred C----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3 124578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCee
Q 004726 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 456 (733)
Q Consensus 377 ~~~~~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lv 456 (733)
+++++++++++||+|||||||++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||+|++.+++|
T Consensus 404 ~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv 483 (737)
T TIGR02441 404 TPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLL 483 (737)
T ss_pred EEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHH
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD 536 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~~~~G~p~Gpf~~~D 536 (733)
||++++.|++++++++..|++.+||.||+++|+||||+||++.++++||++++++|++|+|||+++.++|+|||||+++|
T Consensus 484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D 563 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLAD 563 (737)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC--CCCCCCCchhHHHHHhhhccCCCC
Q 004726 537 LAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPG 612 (733)
Q Consensus 537 ~~Gld~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 612 (733)
.+|||++.++.+.+...+++++. |++++++|+++|++|+|||+|||+|++++ ++.+++.+..++..... .|.
T Consensus 564 ~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~ 639 (737)
T TIGR02441 564 EVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK 639 (737)
T ss_pred HhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc
Confidence 99999999999999999887653 68999999999999999999999998654 35677777766644321 111
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC
Q 004726 613 GKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN 692 (733)
Q Consensus 613 ~~~~~~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~ 692 (733)
....+++||+||++.+++|||++||+|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+++.+|+
T Consensus 640 --~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~ 717 (737)
T TIGR02441 640 --AEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGV 717 (737)
T ss_pred --cccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 113578999999999999999999999997799999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHC-CCCc
Q 004726 693 FFKPSRFLEERATK-GIPL 710 (733)
Q Consensus 693 ~~~p~~~l~~~~~~-g~~g 710 (733)
+|.|+++|++|+++ |+.|
T Consensus 718 ~~~p~~lL~~~~~~~g~~f 736 (737)
T TIGR02441 718 QFTPCQLLLDHAKSPGKKF 736 (737)
T ss_pred CcCCCHHHHHHHHhcCCCC
Confidence 99999999999998 7753
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-129 Score=1124.92 Aligned_cols=696 Identities=31% Similarity=0.527 Sum_probs=617.2
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC
Q 004726 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~--~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (733)
|++. ++.++..+++|++|||||| +.|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 80 (714)
T TIGR02437 1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP 80 (714)
T ss_pred CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence 5655 5778754689999999999 689999999999999999999999999999999999999999999986421111
Q ss_pred --cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
....+....++++ .+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG 159 (714)
T TIGR02437 81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG 159 (714)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence 1112223345566 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCC----cHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLAR 231 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 231 (733)
..+|++|++||++++|++|+++||||+++|++++.+++.++++++......+.+.. ...... .......+...+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAK 237 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765432221111 111111 111111233344
Q ss_pred H-HHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcce
Q 004726 232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (733)
Q Consensus 232 ~-~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~k 310 (733)
. ..++++++||||..++++++++...+++++++.|++.|.+++.|+++++++++|+.+|..++.+.. .+..+++++|
T Consensus 238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~ 315 (714)
T TIGR02437 238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQ 315 (714)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccce
Confidence 4 456788999999999999999999999999999999999999999999999999999999876521 1245678999
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCE
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (733)
|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++++.+..+++|+++++++.+++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (714)
T TIGR02437 316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI 395 (714)
T ss_pred EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHH
Q 004726 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (733)
Q Consensus 391 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~ 470 (733)
|||||||++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||+|++.+|+|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~ 475 (714)
T TIGR02437 396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA 475 (714)
T ss_pred EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004726 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549 (733)
Q Consensus 471 ~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~ 549 (733)
++.++++.+||.||+++|+||||+||++.++++||++|+++|++|++||+++ .++|||||||+++|.+|||+.+++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~ 555 (714)
T TIGR02437 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAV 555 (714)
T ss_pred HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHH
Q 004726 550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 623 (733)
Q Consensus 550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (733)
++..+++++. +++++++|+++|++|+|||+|||+|+++. +..+|+++..++...+. ....+++++|
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i 627 (714)
T TIGR02437 556 MAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY--------EQRDFDDEEI 627 (714)
T ss_pred HHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc--------ccCCCCHHHH
Confidence 9998887642 56899999999999999999999996431 24466666655543321 0124678899
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 004726 624 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER 703 (733)
Q Consensus 624 ~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~ 703 (733)
+||++.+++||+++||+|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+. .++++|.|+++|++|
T Consensus 628 ~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~ 706 (714)
T TIGR02437 628 IARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREM 706 (714)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHH
Confidence 9999999999999999999777999999999999999999999999999999999999999765 789999999999999
Q ss_pred HHCCCCc
Q 004726 704 ATKGIPL 710 (733)
Q Consensus 704 ~~~g~~g 710 (733)
+++|+.|
T Consensus 707 ~~~g~~f 713 (714)
T TIGR02437 707 AKNGQSF 713 (714)
T ss_pred HHcCCCC
Confidence 9988743
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-127 Score=1114.04 Aligned_cols=696 Identities=32% Similarity=0.552 Sum_probs=615.4
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC
Q 004726 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~--~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (733)
|++. ++.++..+++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (715)
T PRK11730 1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP 80 (715)
T ss_pred CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence 6665 5777743689999999999 579999999999999999999999999999999999999999999875421111
Q ss_pred --cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
....+....++++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG 159 (715)
T PRK11730 81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG 159 (715)
T ss_pred HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence 0112222334555 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCc----HHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL----SEAREVLKLAR 231 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 231 (733)
..+|++|++||++++|+||+++||||+|||++++++++.++|++++..+..+... +....++. ......++..+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~--~~~~~~p~a~~~~~~~~~~~~~k 237 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKAR--RQPKLEPLKLSKIEAMMSFTTAK 237 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccc--cCcccccccccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999764322111 11111111 11112233333
Q ss_pred HH-HHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcce
Q 004726 232 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (733)
Q Consensus 232 ~~-~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~k 310 (733)
+. .++++++||++..++++++.+...+++++++.|.+.|..++.|+|++|++++|+++|..++.+... ...+++++|
T Consensus 238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~ 315 (715)
T PRK11730 238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQ 315 (715)
T ss_pred HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccce
Confidence 32 367889999999999999999999999999999999999999999999999999999998765321 234567999
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCE
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (733)
|+|||+|+||.+||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|+++++++.+++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV 395 (715)
T ss_pred EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHH
Q 004726 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (733)
Q Consensus 391 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~ 470 (733)
|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||+|++.+++|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~ 475 (715)
T PRK11730 396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA 475 (715)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004726 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549 (733)
Q Consensus 471 ~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~ 549 (733)
.+.+|++.+||.||+++|+||||+||++.++++||++++++|++++|||+++ .++|+|+|||+++|.+|||++.++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~ 555 (715)
T PRK11730 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV 555 (715)
T ss_pred HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHH
Q 004726 550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 623 (733)
Q Consensus 550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (733)
++..++++.. +++++++|+++|++|+|||+|||+|+++. +..+|+.+..++..... ....+++++|
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i 627 (715)
T PRK11730 556 MAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ--------PKREFSDEEI 627 (715)
T ss_pred HHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc--------ccCCCCHHHH
Confidence 9998887643 57899999999999999999999997432 23455555555543211 0124678899
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 004726 624 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER 703 (733)
Q Consensus 624 ~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~ 703 (733)
.||++.+++|||++|++||++.+|+|||.+|++|+|||+|+||||+++|.+|+|.++++++.+. .++++|+|+++|++|
T Consensus 628 ~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~ 706 (715)
T PRK11730 628 IARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREM 706 (715)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHH
Confidence 9999999999999999999866999999999999999999999999999999999999999875 588999999999999
Q ss_pred HHCCCCc
Q 004726 704 ATKGIPL 710 (733)
Q Consensus 704 ~~~g~~g 710 (733)
+++|+.|
T Consensus 707 v~~~~~f 713 (715)
T PRK11730 707 AANGESY 713 (715)
T ss_pred HHcCCCC
Confidence 9988754
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-126 Score=1105.46 Aligned_cols=688 Identities=35% Similarity=0.575 Sum_probs=606.5
Q ss_pred EEEEEecCcEEEEEeCCC-C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCcccCCCCchhhhhccCCCccccc
Q 004726 6 VTMEVGNDGVAIITLINP-P-VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p-~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
++++..+++|++|||||| . .|+||.+|+++|.++++.++.|+++|+||| +|.|++||+|+|++++...........+
T Consensus 2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (699)
T TIGR02440 2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL 81 (699)
T ss_pred eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence 344554789999999999 3 699999999999999999999999999987 6888999999999988542111111122
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
....++++ ..+.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|..+|+
T Consensus 82 ~~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~ 160 (699)
T TIGR02440 82 AQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL 160 (699)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHH
Confidence 22344566 6799999999999999999999999999999999976 79999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhh-ccCCCCCcHHHHHHHHHHHH-HHHHhC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH-RTDKLGSLSEAREVLKLARL-QAKKTA 238 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 238 (733)
+|+++|++++|+||+++||||+|+|++++++++.++|++. ..+....... +....++. .....+....+ ..++++
T Consensus 161 ~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 161 DMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--KPIRKPLSLQERLLEGTPL-GRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--CCCCCCccchhhhcccCch-hHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999751 0000000000 00000011 11112222233 356788
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCc
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL 318 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kI~VIG~G~ 318 (733)
++|||++++|++++.+...+++++++.|++.|..++.|+|+++++++|+.++..++.++. . ..+++++||+|||+|+
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcH
Confidence 899999999999999999999999999999999999999999999999999998876552 2 2346789999999999
Q ss_pred CcHHHHHHHH-HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEeccC
Q 004726 319 MGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397 (733)
Q Consensus 319 mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avpe 397 (733)
||++||..++ ++|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+.+|+++++++++++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHH
Q 004726 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477 (733)
Q Consensus 398 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~ 477 (733)
++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+.+|++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 004726 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 557 (733)
Q Consensus 478 ~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~ 557 (733)
.+||.||+++|.|||++||++.++++||++++++|++++|||.+++++|||+|||+++|.+|+|++.++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHcCCCCcccCccccccCCCC-CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004726 558 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESC 636 (733)
Q Consensus 558 ~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 636 (733)
+.|++++++|+++|++|+|||+|||+|++++ ++.+++.+..++. ..+ ...+++++++||++.+++|||+
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~v~~Rll~~~~~Ea~ 624 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLG-------IKP---GVDKEASAVAERCVMLMLNEAV 624 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhC-------cCC---CCCCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999998643 3445554443331 111 1247899999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCCCc
Q 004726 637 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710 (733)
Q Consensus 637 ~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 710 (733)
+|++|||+.+|+|||.+|++|+|||+|++|||+++|.+|+|.++++++.+++.+|++|+|+++|++|+++|+.|
T Consensus 625 ~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f 698 (699)
T TIGR02440 625 RCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSF 698 (699)
T ss_pred HHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCc
Confidence 99999996699999999999999999999999999999999999999999999999999999999999998854
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-126 Score=1105.92 Aligned_cols=690 Identities=35% Similarity=0.576 Sum_probs=609.4
Q ss_pred cEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCcccc
Q 004726 5 RVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 5 ~v~~~~~~~~i~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
.++++.++++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||+|.+ ++||+|+|++++...........
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 4667775689999999999 57999999999999999999999999999999864 89999999998754221111112
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A 164 (708)
T PRK11154 86 LARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 164 (708)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence 222344556 6799999999999999999999999999999999986 4899999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHH-HHHHhC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL-QAKKTA 238 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 238 (733)
++|+++|++++|+||+++||||+++|++++.+++.++|+++....+ ......+....++. .....+..++. ..++++
T Consensus 165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-PLPVRERLLEGNPL-GRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-cCCchhhhcccCch-hHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988421110 00000000000011 11122333333 345788
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCc
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL 318 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kI~VIG~G~ 318 (733)
++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.+|..++.+.. . ..+++++||+|||+|.
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence 899999999999999999999999999999999999999999999999999998876552 2 2446799999999999
Q ss_pred CcHHHHHHHH-HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEeccC
Q 004726 319 MGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397 (733)
Q Consensus 319 mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avpe 397 (733)
||++||..++ .+|++|+++|++++.++++.+++++.+++++++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHH
Q 004726 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477 (733)
Q Consensus 398 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~ 477 (733)
++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||+|++.+++|||++++.|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 004726 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 557 (733)
Q Consensus 478 ~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~ 557 (733)
.+||.|++++|.||||+||++.++++||++++++|++++|||.++.++|||+|||+++|.+|+|++.++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999887
Q ss_pred CCCcHHHHHHHHcCCCCcccCccccccCCCCC---CCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHH
Q 004726 558 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK---PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNE 634 (733)
Q Consensus 558 ~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~e 634 (733)
+.|++++++|+++|++|+|||+|||+|+++++ +.+++.+...+. ..+ ...++++||+||++.+++||
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~i~~Rll~~~~nE 629 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLG-------ITP---QSRLSANEIAERCVMLMLNE 629 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhc-------cCC---CCCCCHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999975322 334444433321 111 12478999999999999999
Q ss_pred HHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCCCc
Q 004726 635 SCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710 (733)
Q Consensus 635 a~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 710 (733)
|++|++|||+.+++|||.+|++|+|||+|+||||+++|.+|+|.+++.++.+++.++++|.|+++|++|+++|+.|
T Consensus 630 a~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f 705 (708)
T PRK11154 630 AVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESF 705 (708)
T ss_pred HHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCC
Confidence 9999999996699999999999999999999999999999999999999999999999999999999999998864
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-73 Score=638.38 Aligned_cols=400 Identities=32% Similarity=0.521 Sum_probs=356.5
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+++||+|||+|.||++||.+++++|++|++||++++.++++.+++++.++.++++|.+++++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|.+++|+|||+|++.++++|+++++.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++++.++++.+||.|+++++.|||++||++.++++||+.++++| ++|++||+++ .++|||||||+++|++|+|+.+
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999998 5999999999 6899999999999999999999
Q ss_pred HHHHHHHHhC-CCCCC-CcHHHHHHHHcCCCCcccCccccccCCCCCCCCC-----------------------------
Q 004726 545 ATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD----------------------------- 593 (733)
Q Consensus 545 ~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~----------------------------- 593 (733)
++++.+++.+ ++..+ |++++++|+++|++|+|||+|||+|+++......
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988874 55444 7899999999999999999999999764322111
Q ss_pred -----------------------------------------CCchhHHHHHhhhccC--CCC------------------
Q 004726 594 -----------------------------------------PSVLPIIEECRRLSNI--MPG------------------ 612 (733)
Q Consensus 594 -----------------------------------------~~~~~~~~~~~~~~~~--~~~------------------ 612 (733)
+.+..++...+....+ .+.
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 0000000000000000 110
Q ss_pred CC-Cccc--chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHH
Q 004726 613 GK-PISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL 689 (733)
Q Consensus 613 ~~-~~~~--~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~ 689 (733)
++ +..+ +++||+||++++++|||+++++||++ +++|||.+|++|+|||+ |||+++|.+|+|.++++++.+++.
T Consensus 404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~ 479 (503)
T TIGR02279 404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH 479 (503)
T ss_pred CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 00 0011 35999999999999999999999999 99999999999999999 999999999999999999999999
Q ss_pred hC-CCCCCCHHHHHHHHCCCCc
Q 004726 690 YG-NFFKPSRFLEERATKGIPL 710 (733)
Q Consensus 690 ~~-~~~~p~~~l~~~~~~g~~g 710 (733)
++ ++|+|+++|++|++.|..+
T Consensus 480 ~~~~~~~p~~~L~~~v~~g~~~ 501 (503)
T TIGR02279 480 YGEERYRPSSLLRRRALLGSGY 501 (503)
T ss_pred cCCCcCCcCHHHHHHHHcCCCc
Confidence 98 5899999999999998765
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-72 Score=627.36 Aligned_cols=402 Identities=32% Similarity=0.540 Sum_probs=358.8
Q ss_pred CCCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 305 ~~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
.+++++|+|||+|.||++||.+++++|++|++||++++.++++.+++++.+++++++|.++.++.+..++++..+++++.
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
+++||+|||||||+.++|+.+|++++..+++++|++||||++++++++..+.+|+|++|+|||+|++.++++|+++++.|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHH
Q 004726 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGV 542 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~ 542 (733)
++++++++.++++.+||.|++++|.|||++||++.++++|+++++++| +++++||+++ .++|||||||+++|.+|+|+
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv 243 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence 999999999999999999999999999999999999999999999998 5999999999 78999999999999999999
Q ss_pred HHHHHHHHHHhC-CC-CCCCcHHHHHHHHcCCCCcccCccccccCCCCC-CCCCCCchhH----------------HHHH
Q 004726 543 AAATSKEFDKAF-PD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSVLPI----------------IEEC 603 (733)
Q Consensus 543 ~~~~~~~l~~~~-~~-~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~-~~~~~~~~~~----------------~~~~ 603 (733)
.+++.+.+...+ ++ ++.|++++++|+++|++|+|+|+|||+|+++++ ..++++.... +...
T Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (507)
T PRK08268 244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL 323 (507)
T ss_pred HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence 999999988764 34 444789999999999999999999999975433 2223221100 0000
Q ss_pred h------------------------------h--hcc-----------CCCC--CCCccc--------------------
Q 004726 604 R------------------------------R--LSN-----------IMPG--GKPISV-------------------- 618 (733)
Q Consensus 604 ~------------------------------~--~~~-----------~~~~--~~~~~~-------------------- 618 (733)
. . ... +.|. .+..++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~ 403 (507)
T PRK08268 324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ 403 (507)
T ss_pred HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0 000 0000 011111
Q ss_pred ----------chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHH
Q 004726 619 ----------TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQ 688 (733)
Q Consensus 619 ----------~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~ 688 (733)
+++||+||++.+++|||++|++|||+ +|+|||.+|++|+|||+ |||+++|.+|+|.++++++.+++
T Consensus 404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~ 479 (507)
T PRK08268 404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQA 479 (507)
T ss_pred cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHH
Confidence 68999999999999999999999998 99999999999999999 99999999999999999999999
Q ss_pred HhCC-CCCCCHHHHHHHHCCCCc
Q 004726 689 LYGN-FFKPSRFLEERATKGIPL 710 (733)
Q Consensus 689 ~~~~-~~~p~~~l~~~~~~g~~g 710 (733)
.+|+ +|+|+++|++|+++|+.|
T Consensus 480 ~~g~~~~~p~~ll~~~v~~G~~~ 502 (507)
T PRK08268 480 LYGDPRYRPSPWLRRRAALGLSL 502 (507)
T ss_pred HhCCCcCCcCHHHHHHHHcCCCc
Confidence 9985 999999999999998754
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=520.62 Aligned_cols=280 Identities=40% Similarity=0.682 Sum_probs=270.8
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.++||+|||+|.||++||..++..|++|+++|++++.++++...+++.+++++++|.+++++.+..+++++.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+|||+|||++++|+++|++++.++++++|++||||+++++++++.+.+|+||+|+|||||++.+++||++++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++++.+|++.+||.|++++|.||||+||++.++++||++++++|+ +|++||+++ .++|+|||||+++|++|+|+.+
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999995 999999999 7899999999999999999999
Q ss_pred HHHHHHHHhCCCC-CC-CcHHHHHHHHcCCCCcccCccccccCC
Q 004726 545 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYEK 586 (733)
Q Consensus 545 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~ 586 (733)
++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888843 33 789999999999999999999999975
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=462.67 Aligned_cols=280 Identities=32% Similarity=0.577 Sum_probs=266.2
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHH-----HHHHhhcccccc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-----ANNALKMLKGVL 380 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~-----~~~~~~~i~~~~ 380 (733)
.+++.|+|||+|.||++||+..+.+|++|+++|++++++.++.+.|.+.+.+..+++..+... ++..+.+|..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999999999999999999999999999999999888776544 367788999999
Q ss_pred Cc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe
Q 004726 381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 459 (733)
Q Consensus 381 ~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv 459 (733)
+. ++++++|+|||++.|++++|+.+|++++..+++++|++||||++.+++++..+.+|.||.|+|||||+++|.+||++
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 88 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHh
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDL 537 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~ 537 (733)
.+..|+++++..+..|.+.+||++|-++|.||||+||++.+|+.||+++++.|. +.+|||.+| .|.|+||||||++|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 999999999 899999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCC--CCCcHHHHHHHHcCCCCcccCccccccC
Q 004726 538 AGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE 585 (733)
Q Consensus 538 ~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 585 (733)
+|||++.-+++.+++.++++ +.|+|++.++|++|++|+|+|+|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999998653 3499999999999999999999999993
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-59 Score=485.93 Aligned_cols=279 Identities=34% Similarity=0.551 Sum_probs=270.0
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
++++||+|||+|.||.+||..++++|++|++||++++.++++.+++++.+++++++|.+++.+.+..+++++++++++.+
T Consensus 3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhC-CCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~-~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
++||+|||||||+.++|+++|+++++.+ ++++|++||||++++++++....+|+|++|+|||+|++.++++||+++..|
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T 162 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT 162 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-HcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004726 465 SAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (733)
Q Consensus 465 ~~e~~~~~~~l~~-~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld 541 (733)
++++++++.+++. .+||.|++++|.|||++||++.+++|||++++++|+ +|+|||+++ .++|||+|||+++|.+|+|
T Consensus 163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence 9999999999988 599999999999999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCcccccc
Q 004726 542 VAAATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTY 584 (733)
Q Consensus 542 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y 584 (733)
++.++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 99999999999998755 48999999999999999999999998
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=474.72 Aligned_cols=376 Identities=39% Similarity=0.637 Sum_probs=345.2
Q ss_pred CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEeccCC
Q 004726 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES 398 (733)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avpe~ 398 (733)
||++||.++..+|++|++.|.+...++++..++...+...+..+.++..+.......+..+.|++.+++||+|||+|.||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHH
Q 004726 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478 (733)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 478 (733)
+++|++++.+|++++++.+|+.+|||++++.++++.+..+++++|+|||+|.+.++++|++.+.+|+..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 004726 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 557 (733)
Q Consensus 479 lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~-Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~ 557 (733)
.|+.|+++++++||.+||++.+|.+++.+++.+ |++|.++|.+...||||+||+++.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999999988 9999999999999999999999999999999888776665555443
Q ss_pred CCCcHHHHHHHHcCCCCcccCccccccCCCCCCCCCC-CchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004726 558 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDP-SVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESC 636 (733)
Q Consensus 558 ~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 636 (733)
+.++|++.|+.|+|||+|||.|+.+..+..++ +..+.+... . ....+...+++++++|++++++|||+
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l---~---~~~~~r~~~~ed~v~~~~~p~VnEal 309 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRL---S---LTPNPRVADDEDFVEFLLSPFVNEAL 309 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHh---c---cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence 78999999999999999999998765444444 233333322 2 11223457899999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCCCc
Q 004726 637 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710 (733)
Q Consensus 637 ~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 710 (733)
+|++||+..+++++|.+.++|+|||+++||||.|+|..|++.++..++.|+. |+|+++|++++++|+.+
T Consensus 310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~ 378 (380)
T KOG1683|consen 310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKF 378 (380)
T ss_pred HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999875 99999999999987755
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=455.91 Aligned_cols=279 Identities=29% Similarity=0.443 Sum_probs=264.5
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHH-HHHHhhccccccCc-cc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDY-SE 384 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~ 384 (733)
+++||+|||+|.||++||..++++|++|++||++++.++++.+.+++.+....+.+.++.++ .+....++..++++ ++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46799999999999999999999999999999999999999998888888888888888776 66777889888888 46
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
+++||+||+|+||+.++|+.+++++.+.+++++||++|+|+++++++++.+.+++||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004726 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld 541 (733)
++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +|+|||+++ .++|+|+|||+++|.+|||
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 9999999999999999999999 599999999999999999999999996 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccC
Q 004726 542 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE 585 (733)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~ 585 (733)
++.++++.+++.++++++ |++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 88999999999999999999999994
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=450.48 Aligned_cols=281 Identities=32% Similarity=0.512 Sum_probs=267.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++||+|||+|.||.+||..|+++|++|++||++++.++++.+.+...++..++.+.++..+.+....++..++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999988888888888889999988888888899888888 6789
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+|+|++.++|+.+++++.+.+++++|+++|+|+++++++++...++.+++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++++.++++.+|+.|++++|.|||++||++.++++||++++++|+ +|+|||.++ .++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999996 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccccccCCCC
Q 004726 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS 588 (733)
Q Consensus 545 ~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~ 588 (733)
++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999998877799999999999999999999999997643
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=449.74 Aligned_cols=278 Identities=31% Similarity=0.549 Sum_probs=263.7
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHH---HHHHhHhcCCCCHHHHHHHhhccccccCcc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~---~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (733)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++++ .++..++.|.++..+.+..+.++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 46899999999999999999999999999999999999988877766 367778889888888888888888888877
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~ 463 (733)
.+++||+||+|+||+.++|+++++++.+.+++++||+|+||+++++++++.+.++.|++|+||++|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld 541 (733)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCccc-----Ccccccc
Q 004726 542 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKAN-----GKGLYTY 584 (733)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~-----g~Gfy~y 584 (733)
++.++++.+++.++++++ |++++++|+++|++|+|| |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 999999999999988654 889999999999999999 9999998
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=447.32 Aligned_cols=278 Identities=36% Similarity=0.607 Sum_probs=267.0
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.|+||+|||+|.||.+||..++++|++|+++|++++.++++.+++++.++...+.|.++..+......++..+++++.++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 36799999999999999999999999999999999999999999999999999999999888888888998888887799
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+|+||++++|+++++++.++++++++|+|+||+++++.+++.+.++.|++++||++|++.++++|++++..|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++.+.++++.+|+.|++++|.|||++||++.+++|||++++++|+ +|+|||.++ .++|||+|||+++|.+|+|++.
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 241 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL 241 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCcccccc
Q 004726 545 ATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTY 584 (733)
Q Consensus 545 ~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y 584 (733)
++++.+++.++++. .|++++++|+++|++|+|+|+|||+|
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 99999999998754 48899999999999999999999998
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-53 Score=448.20 Aligned_cols=282 Identities=32% Similarity=0.567 Sum_probs=269.7
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+++||+|||+|.||.+||..|+++|++|++||++++.++++.+++++.++.+++.|.++.++.+..++++.++++.+.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999998888888888888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+||||++++|+.+++++.+.+++++||+||||+++++++++.+.++.+++++||++||+.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++.+.++++.+|+.++++++.|||++||++.++++||++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999996 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCccccccCCCC
Q 004726 545 ATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTYEKGS 588 (733)
Q Consensus 545 ~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~ 588 (733)
++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 99999999998754 488999999999999999999999997654
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=443.08 Aligned_cols=281 Identities=32% Similarity=0.515 Sum_probs=267.3
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+.+...++.|.++..+....+.++..+++++.++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 47899999999999999999999999999999999999999888988888889999999888888888899888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+||||+.++|+.+++++.+.++++++|+|+||+++++++++.+.++++++|+||++|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++.+.++++.+|+.+++++|.|||++||++.++++|+++++++|+ ++++||+++ .++|||+|||+++|.+|+|++.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCccccccCCC
Q 004726 545 ATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTYEKG 587 (733)
Q Consensus 545 ~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 587 (733)
++++.+++.++++. .|++++.+|++.|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 99999999988754 48899999999999999999999999654
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=433.03 Aligned_cols=268 Identities=28% Similarity=0.411 Sum_probs=255.4
Q ss_pred CcHHHHHHHHHCCCeeEEEeCChH-------HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC--c-cccCCC
Q 004726 319 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV 388 (733)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~e-------~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l~~a 388 (733)
||++||..++.+|++|+++|++++ .++++.+++++.++.++++|.++.++.+..+++++++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 477788999999999999999999999999999998865 3 678999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHH
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~ 468 (733)
|+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhchHHH
Q 004726 469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA 543 (733)
Q Consensus 469 ~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p---~Gpf~~~D~~Gld~~ 543 (733)
++++.++++.+|+.|++++|.|||++||++.++++|++.++++| +++++||.++ .++|+| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999998 5999999999 799999 699999999999999
Q ss_pred HHHHHHHHHhCCC-CCCCcHHHHHHHHcCCCCcccCccccccCC
Q 004726 544 AATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEK 586 (733)
Q Consensus 544 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~ 586 (733)
.++++.+++.+++ ++.|++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998888 555899999999999999999999999964
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=431.43 Aligned_cols=277 Identities=23% Similarity=0.318 Sum_probs=248.9
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
++++||+|||+|+||++||..++++|++|++||++++.++++.+.+.+.++.+.+.+. ... ...+++.+++++ ++
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-APG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Chh---hHHhhceecCCHHHH
Confidence 4578999999999999999999999999999999999999998899988988888873 332 334688888888 67
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
+++||+|||||||++++|+++|+++++.+++++||+||||+++++++++.+.+|+||+++||||||+.+|+|||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004726 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA 538 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p---~Gpf~~~D~~ 538 (733)
++++++++.+|++.+||+||++ +|.||||+||++.++++||++++++|+ +++|||+++ .++|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 799999999999999999999999996 999999999 799998 8999999999
Q ss_pred chHH-HHHHHHHHHHhCCCC---CCCcHHHHHHHH------cCCCCcccCccccccCC
Q 004726 539 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGKANGKGLYTYEK 586 (733)
Q Consensus 539 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~g~~G~k~g~Gfy~y~~ 586 (733)
|+|. +.+.++++.+.+.+. ..+|++..+|++ ++.+|.++.+++|.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9997 555556665554221 224556777777 68999999999999964
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=395.34 Aligned_cols=249 Identities=33% Similarity=0.513 Sum_probs=224.1
Q ss_pred EEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhH
Q 004726 8 MEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVS 86 (733)
Q Consensus 8 ~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (733)
+...+++|+.||||||+ +|+|+..++.+|.++|..+++|+.+.++||||.|+.||+|+|++++.......-... ..
T Consensus 40 ~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~---~~ 116 (290)
T KOG1680|consen 40 LVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDG---IF 116 (290)
T ss_pred EeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccc---cc
Confidence 33337899999999995 799999999999999999999999999999999999999999999977433221111 12
Q ss_pred HHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcC
Q 004726 87 VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS 166 (733)
Q Consensus 87 ~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG 166 (733)
.+.+ ..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++|++|++|||++|+|.||.++|++|++||
T Consensus 117 ~~~~-~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg 195 (290)
T KOG1680|consen 117 LRVW-DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTG 195 (290)
T ss_pred cchh-hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhc
Confidence 2333 345579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHH
Q 004726 167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA 246 (733)
Q Consensus 167 ~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 246 (733)
++++|+||+++|||++|||.++++.+|.+|+++|++.|+..++ +
T Consensus 196 ~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~------------------------------------~ 239 (290)
T KOG1680|consen 196 RRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVR------------------------------------A 239 (290)
T ss_pred CcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHH------------------------------------H
Confidence 9999999999999999999999999999999999999875433 5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 247 CLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 247 ~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.|++++.+.+.++.+++..|...|...+.++|.+|+|.+|.+||++++..
T Consensus 240 ~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~k 289 (290)
T KOG1680|consen 240 DKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFSK 289 (290)
T ss_pred HHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccccc
Confidence 67889999999999999999999999999999999999999999998753
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=408.52 Aligned_cols=253 Identities=30% Similarity=0.471 Sum_probs=228.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (257)
T PRK05862 1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M 76 (257)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence 8888899998 7899999999995 799999999999999999999999999999999999999999998754211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+.......+ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 155 (257)
T PRK05862 77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence 11112233445 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|+|++++++++.++++++++.++.++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~------------------------------- 204 (257)
T PRK05862 156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAV------------------------------- 204 (257)
T ss_pred HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998876543
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..+|++++.....++.++++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus 205 -----~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 205 -----MMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 35678888887889999999999999999999999999999999998775
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=408.79 Aligned_cols=255 Identities=40% Similarity=0.651 Sum_probs=227.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+ ++.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++..........
T Consensus 1 ~~--~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 77 (257)
T PRK07658 1 MK--FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQAT 77 (257)
T ss_pred Cc--eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHH
Confidence 55 678888 789999999999889999999999999999999999999999999999999999999875432111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.+....+.++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK07658 78 ELAQLGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKAL 156 (257)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHH
Confidence 1222334556 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||+|+|++++++++.++++++++.+|.++
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~-------------------------------- 204 (257)
T PRK07658 157 EMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATT-------------------------------- 204 (257)
T ss_pred HHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999876433
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|...+..++.|+|+++++++|++||+|++.
T Consensus 205 ----~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~ 255 (257)
T PRK07658 205 ----RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFS 255 (257)
T ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 256777887777889999999999999999999999999999999988753
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-49 Score=406.53 Aligned_cols=254 Identities=33% Similarity=0.548 Sum_probs=225.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCC-
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~- 77 (733)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 78 (260)
T PRK05980 1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA 78 (260)
T ss_pred CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence 66 4688888 8899999999994 7999999999999999999999999999999998 6999999999875421111
Q ss_pred --cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
....+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 157 (260)
T PRK05980 79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG 157 (260)
T ss_pred hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence 1112222233455 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (733)
..+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.+|.+++
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 211 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVA-------------------------- 211 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999998765432
Q ss_pred HhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhc
Q 004726 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (733)
Q Consensus 236 ~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~ 293 (733)
.+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+
T Consensus 212 ----------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 212 ----------AILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 457778877778899999999999999999999999999999999875
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=405.82 Aligned_cols=255 Identities=33% Similarity=0.545 Sum_probs=229.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... ..
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK05809 1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE 78 (260)
T ss_pred CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence 8999999998 7899999999995 7999999999999999999999999999999999 89999999998754221 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK05809 79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 111222234555 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|+|++++++.+.+++++++..+|.++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------ 207 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAV------------------------------ 207 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..+|+.++.+...+++++++.|.+.+..++.|+|+++++++|++||+|++
T Consensus 208 ------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 208 ------KLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 25677888888888999999999999999999999999999999998775
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-49 Score=409.15 Aligned_cols=256 Identities=28% Similarity=0.419 Sum_probs=226.0
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC--
Q 004726 1 MA-APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-- 76 (733)
Q Consensus 1 m~-~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-- 76 (733)
|+ ++.+.+++ +++|++|||||| +.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus 2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence 55 57899998 889999999999 57999999999999999999999999999999999999999999987542110
Q ss_pred -----Ccccc---cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh
Q 004726 77 -----GDVSL---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (733)
Q Consensus 77 -----~~~~~---~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~ 148 (733)
..... ......+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 00011 112234555 568999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHH
Q 004726 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL 227 (733)
Q Consensus 149 ~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (733)
+|++++|..+|++|+++|++++|+||+++||||+|+|+ +++++++.+++++++..||.+++
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~------------------ 221 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVR------------------ 221 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence 99999999999999999999999999999999999985 88999999999999998875433
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 228 ~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++
T Consensus 222 ------------------~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 222 ------------------GTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred ------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998774
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=404.09 Aligned_cols=252 Identities=31% Similarity=0.474 Sum_probs=224.7
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCcccccc
Q 004726 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP 83 (733)
Q Consensus 5 ~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (733)
.+.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++..... .....+.
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~ 81 (258)
T PRK09076 4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK-AVAREMA 81 (258)
T ss_pred EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh-hhHHHHH
Confidence 478888 78999999999988999999999999999999999999999999998 68999999998754211 1111122
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHH
Q 004726 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (733)
Q Consensus 84 ~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ 163 (733)
.....++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus 82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 160 (258)
T PRK09076 82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI 160 (258)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2234555 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchH
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (733)
++|++++|+||+++||||+|+|++++++++.+++++++..+|.+++
T Consensus 161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------------- 206 (258)
T PRK09076 161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA---------------------------------- 206 (258)
T ss_pred HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 244 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....++++.++.|...+..++.++++++++++|++||+|++.
T Consensus 207 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 256 (258)
T PRK09076 207 --ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQWK 256 (258)
T ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 45677777777789999999999999999999999999999999988753
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=404.32 Aligned_cols=255 Identities=25% Similarity=0.380 Sum_probs=226.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC--
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.+++++++ |+++|+|||+|.|++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence 8889999998 7899999999995 79999999999999999999 99999999999999999999999875321111
Q ss_pred ccc-ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 78 DVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 78 ~~~-~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
... .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 157 (262)
T PRK08140 79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM 157 (262)
T ss_pred hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence 000 1111223345 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.+|.+++
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~--------------------------- 210 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLA--------------------------- 210 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998765332
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++.++++.|...+..++.|+|+++++++|++||+|.+
T Consensus 211 ---------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 211 ---------LIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred ---------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998775
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=402.59 Aligned_cols=252 Identities=25% Similarity=0.410 Sum_probs=224.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+..++.++..+++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 81 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS 81 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence 67778999975789999999999 47999999999999999999999999999999998 69999999998754221 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+....+.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 112223334556 6789999999999999999999999999999999999999999999998 88888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|||++++.+++.+++++++..||.+++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 210 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR----------------------------- 210 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~ 291 (733)
.+|+.++.....+++++++.|...+..++.|+|+++++++|++||+
T Consensus 211 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 211 -------QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred -------HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 4567777777788999999999999999999999999999999985
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=401.26 Aligned_cols=252 Identities=29% Similarity=0.434 Sum_probs=223.5
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+.|.+++ +++|++||||||+ .|++|.+|+++|.++++.++ +++|+|||||.|++||+|+|++++...... .....
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~-~~~~~ 77 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAG-EGMHH 77 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccch-hHHHH
Confidence 4578888 7899999999995 79999999999999999997 789999999999999999999988542211 11112
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 156 (255)
T PRK08150 78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM 156 (255)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 22344556 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
+++|++++|+||+++||||+|||++++.+.+.++|+++++.+|.+++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 203 (255)
T PRK08150 157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF--------------------------------- 203 (255)
T ss_pred HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998875432
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+.++
T Consensus 204 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 204 ---AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred ---HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 456777777778899999999999999999999999999999999987643
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=401.79 Aligned_cols=255 Identities=26% Similarity=0.366 Sum_probs=224.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence 8899999998 7899999999995 7999999999999999999999999999999999999999999987542111101
Q ss_pred ccc--chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 80 SLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 80 ~~~--~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
... .....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|..
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~ 157 (262)
T PRK05995 80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGER 157 (262)
T ss_pred hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHH
Confidence 111 12234556 67899999999999999999999999999999999999999999999999988765 589999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
+|++|+++|++++|+||+++||||+|+|++++.+++.+++++++..++.+++
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 209 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVR---------------------------- 209 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999988765432
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++.+. ++.|...+..++.|+|+++++++|++||+|.+
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 210 --------AGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred --------HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 45677777777788888 88999999999999999999999999998875
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=399.69 Aligned_cols=252 Identities=31% Similarity=0.457 Sum_probs=225.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|| .+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~--~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~ 74 (255)
T PRK09674 1 MS--ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A 74 (255)
T ss_pred Cc--eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h
Confidence 55 477887 7899999999996 699999999999999999999999999999999999999999998754211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++
T Consensus 75 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 153 (255)
T PRK09674 75 ATLNDPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA 153 (255)
T ss_pred hhHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHH
Confidence 11122233455 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 203 (255)
T PRK09674 154 SQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALR------------------------------ 203 (255)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....++++.++.|.+.+..++.++++++++++|++||+|++.
T Consensus 204 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~~ 253 (255)
T PRK09674 204 ------AAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFK 253 (255)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 45677777778889999999999999999999999999999999988753
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=401.98 Aligned_cols=255 Identities=23% Similarity=0.338 Sum_probs=224.9
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
..+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 9 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 87 (266)
T PRK08139 9 EAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFR 87 (266)
T ss_pred cCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHH
Confidence 456788888 8899999999995 69999999999999999999999999999999999999999999875422111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.+.....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|+|++|..+|+
T Consensus 88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 88 ALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 1222234555 568999999999999999999999999999999999999999999999999875 56899999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||+|+|++++++++.++++++++.++.+++
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 214 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVR------------------------------- 214 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875433
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||++++.
T Consensus 215 -----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 264 (266)
T PRK08139 215 -----IGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEWR 264 (266)
T ss_pred -----HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 46778888888889999999999999999999999999999999988753
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=403.11 Aligned_cols=256 Identities=24% Similarity=0.330 Sum_probs=227.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCcccCCCCchhhhhccCCC-
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~-~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (733)
|+|+.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence 8999999998 7899999999995 79999999999999999999876 499999999999999999999875422110
Q ss_pred ---c-ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccc
Q 004726 78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (733)
Q Consensus 78 ---~-~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~ 153 (733)
. ...+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 011112234555 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHH
Q 004726 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (733)
Q Consensus 154 ~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (733)
+|+.+|++|+++|++++|+||+++||||+|+|++++++++.+++++++..|+.+++
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------ 214 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALG------------------------ 214 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999988764332
Q ss_pred HHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 234 ~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.....++.++++.|...+..++.|+|+++++.+|++||++++
T Consensus 215 ------------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 215 ------------LIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred ------------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998875
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=400.22 Aligned_cols=251 Identities=24% Similarity=0.344 Sum_probs=220.6
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccch
Q 004726 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
|.++. +++|++||||||+ .|++|.+|+++|.++++++++|+++|+|||+|.|++||+|+|++++....... ...+..
T Consensus 1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 78 (255)
T PRK06563 1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE 78 (255)
T ss_pred CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence 35677 7899999999995 79999999999999999999999999999999999999999999875421111 111111
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
...+.+...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 12233323478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHH
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (733)
||++++|+||+++||||+|+|++++.+++.++++++++.+|.+++
T Consensus 159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 203 (255)
T PRK06563 159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQ----------------------------------- 203 (255)
T ss_pred cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999988765433
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++.++++.|...+..++.|+|+++++++|++||+|..
T Consensus 204 -~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 204 -ATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998775
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=401.05 Aligned_cols=257 Identities=20% Similarity=0.268 Sum_probs=221.6
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 1 MA-APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~-~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+ |+++.++.++++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 1 ~~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 1 MSDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred CCCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 55 899999984478999999999 4799999999999999999999999999999999999999999998754211110
Q ss_pred ccc--cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 79 VSL--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 79 ~~~--~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
... ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ ++++++|.
T Consensus 81 ~~~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~ 158 (265)
T PRK05674 81 NTNLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE 158 (265)
T ss_pred hhhhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence 011 111233555 56899999999999999999999999999999999999999999999999988765 58899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++|++||++++|+||+++||||+|+|++++.+++.++++++++.+|.+++
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------- 211 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALR--------------------------- 211 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875443
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~-E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....++++++.. +...+..++.|+++++++++|++||+|.+.
T Consensus 212 ---------~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~ 262 (265)
T PRK05674 212 ---------ASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ 262 (265)
T ss_pred ---------HHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence 45677777777778888765 456788899999999999999999988753
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=399.62 Aligned_cols=254 Identities=31% Similarity=0.468 Sum_probs=224.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC-Ccc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~ 79 (733)
|+|+.+.++. +++|++||||||+.|++|++|+++|.++++.++.|+++|+|||+|.|++||+|+|++++...... ...
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 79 (257)
T PRK06495 1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL 79 (257)
T ss_pred CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence 8899999998 78999999999988999999999999999999999999999999999999999999987542111 111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
........+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|..+|
T Consensus 80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 11122234555 56899999999999999999999999999999999999999999999996 456789999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|+|++++.+.+.++++++++.+|.+++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATR------------------------------ 205 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....++.++++.|...+..++.|+|+++++++|++||+|++.
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~ 255 (257)
T PRK06495 206 ------LAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVFK 255 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCCC
Confidence 45677777777889999999999999999999999999999999998753
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=402.08 Aligned_cols=255 Identities=27% Similarity=0.356 Sum_probs=225.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC-
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~-~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (733)
|| +.+.++. +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (266)
T PRK09245 1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG 78 (266)
T ss_pred CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 66 4588888 7899999999995 699995 99999999999999999999999999999999999999885421110
Q ss_pred -cc----cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhcc
Q 004726 78 -DV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR 152 (733)
Q Consensus 78 -~~----~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r 152 (733)
.. ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~ 157 (266)
T PRK09245 79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR 157 (266)
T ss_pred ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence 00 01111123455 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004726 153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (733)
Q Consensus 153 ~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (733)
++|..+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.||.+++
T Consensus 158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------- 214 (266)
T PRK09245 158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALR----------------------- 214 (266)
T ss_pred HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999998875443
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++++.+..|...+..++.|+|+++++++|++||+|.+
T Consensus 215 -------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 215 -------------LTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred -------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 4567777777788999999999999999999999999999999998875
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=399.81 Aligned_cols=257 Identities=23% Similarity=0.313 Sum_probs=222.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|+.+.+++++++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||+|.|++||+|+|++++.........
T Consensus 1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence 778889999844689999999995 7999999999999999999999999999999999999999999987532111111
Q ss_pred c--ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 80 S--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 80 ~--~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
. ........++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus 81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~ 158 (262)
T PRK07468 81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA 158 (262)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence 0 1112233455 67999999999999999999999999999999999999999999999999999998855 559999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
++++|+++|++++|+||+++||||+|+|++++.+.+.++++++++.+|.+++
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~---------------------------- 210 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVA---------------------------- 210 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.......+++++.|...+..++.|+|+++++++|++||++++.
T Consensus 211 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~ 260 (262)
T PRK07468 211 --------AAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAWR 260 (262)
T ss_pred --------HHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 45667766655667888999999999999999999999999999998753
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=399.64 Aligned_cols=255 Identities=30% Similarity=0.492 Sum_probs=226.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+ +++.+++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... ..
T Consensus 1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK07657 1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ 78 (260)
T ss_pred CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence 67 578888646899999999995 7999999999999999999999999999999999 49999999998754211 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 112222334556 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|+|++++++++.+++++++..++.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------- 208 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVR----------------------------- 208 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998765433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....+++++++.|...+..++.|+++++++++|++||++++
T Consensus 209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 209 -------QAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4577788777788999999999999999999999999999999998775
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=397.48 Aligned_cols=252 Identities=31% Similarity=0.432 Sum_probs=222.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 8999999998 7899999999996 6999999999999999999999999999999998 6999999999875421111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
........+. .+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+
T Consensus 79 --~~~~~~~~~~--~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 --WPESGFGGLT--SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred --hhhHHHHHHH--HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0111122233 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|+|++++++++.+++++++..+|.+++
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 205 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR----------------------------- 205 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E--~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....+++++++.| ...+..++.|+|+++++.+|++||+|++
T Consensus 206 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 206 -------ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 456777777778899999999 5578899999999999999999988775
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=398.03 Aligned_cols=251 Identities=32% Similarity=0.470 Sum_probs=224.3
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+++.++.++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|+|++++..... ...+
T Consensus 7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~ 83 (261)
T PRK08138 7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY 83 (261)
T ss_pred CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence 467788756889999999995 699999999999999999999999999999999999999999998754211 1112
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|
T Consensus 84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 162 (261)
T PRK08138 84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM 162 (261)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence 22334555 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
+++|++++|+||+++||||+|+|++++.+++.++++++++.++.++
T Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~---------------------------------- 208 (261)
T PRK08138 163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLAL---------------------------------- 208 (261)
T ss_pred HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998776432
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..+|++++.....+++++++.|.+.+..++.|+++++++++|++||++++
T Consensus 209 --~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 209 --AQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 35677788777888999999999999999999999999999999998875
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-48 Score=401.81 Aligned_cols=256 Identities=27% Similarity=0.372 Sum_probs=226.5
Q ss_pred CCCCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~-~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+|+.+.+++ ++ +|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++........
T Consensus 2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06210 2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG 80 (272)
T ss_pred CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence 8899999998 67 99999999994 799999999999999999999999999999999999999999998754221110
Q ss_pred c-----cccch----hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhh
Q 004726 79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR 149 (733)
Q Consensus 79 ~-----~~~~~----~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~ 149 (733)
. ..+.. ..++.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 0 00100 123445 5688999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHHHHHHHH
Q 004726 150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK 228 (733)
Q Consensus 150 l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (733)
|++++|+.++++|+++|++++|+||+++||||+|+|++++++++.++++++++. +|.++
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~-------------------- 219 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASM-------------------- 219 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999975 65433
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..+|+.++.....+++++++.|...+..++.|+++++++++|++||+|.+
T Consensus 220 ----------------~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 220 ----------------AVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred ----------------HHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 24577788777788999999999999999999999999999999998775
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=396.65 Aligned_cols=254 Identities=28% Similarity=0.466 Sum_probs=224.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
.+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---- 83 (265)
T PLN02888 8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD---- 83 (265)
T ss_pred CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence 3467777546889999999995 79999999999999999999999999999999999999999999875321111
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
......+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 111123455 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 210 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL-------------------------------- 210 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999998875433
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhhhhhcCCCC
Q 004726 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~--~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|++++.....+++++++.|...+..++ .|+++++++++|++||+++|.|.
T Consensus 211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~ 264 (265)
T PLN02888 211 ----RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPSK 264 (265)
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCCC
Confidence 45777877777889999999998888886 59999999999999999998763
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=398.26 Aligned_cols=253 Identities=25% Similarity=0.343 Sum_probs=222.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 45788888 7899999999995 699999999999999999999999999999999999999999998864321111110
Q ss_pred --c-chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 82 --~-~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
. ...... + ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+
T Consensus 83 ~~~~~~~~~~-~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 83 GSYDPSRIDA-L-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhHHHH-H-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 0 011112 3 2378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|||++++++++.++++++++.||.+++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~----------------------------- 211 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQ----------------------------- 211 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998865433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++.++++.|.+.+..++.++++++++++|++||+|++
T Consensus 212 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 212 -------AILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 4567787777788999999999999999999999999999999998875
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=397.68 Aligned_cols=253 Identities=24% Similarity=0.344 Sum_probs=222.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
||. .+.+++ +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~~-~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-- 76 (261)
T PRK03580 1 MSE-SLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-- 76 (261)
T ss_pred CCc-eEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence 663 588888 78999999999988999999999999999999999999999999998 6999999999875422111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+.......+ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a 155 (261)
T PRK03580 77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155 (261)
T ss_pred hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11111122344 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++++++|++++|+||+++||||+|+|++++.+++.++++++++.+|.+++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA------------------------------ 205 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK----VFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~----~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....+++++++.|.. .+..++.|+|+++++++|++||++.+
T Consensus 206 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 206 ------ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 45677777777888898888874 78889999999999999999998775
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=397.42 Aligned_cols=250 Identities=26% Similarity=0.379 Sum_probs=220.7
Q ss_pred EEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC-Ccc-cccc
Q 004726 7 TMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV-SLMP 83 (733)
Q Consensus 7 ~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~-~~~~ 83 (733)
.+++ +++|++||||||+ .|++|.+|+.+|.++++.+++|+ +|+|||||.|++||+|+|++++...... ... ..+.
T Consensus 2 ~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T TIGR02280 2 LSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIE 79 (256)
T ss_pred eEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHH
Confidence 5677 7899999999994 79999999999999999999998 9999999999999999999987542111 100 1111
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHH
Q 004726 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (733)
Q Consensus 84 ~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ 163 (733)
.....++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus 80 ~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 80 TFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 1123344 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchH
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (733)
++|++++|+||+++||||+|+|++++++++.++++++++.||.+++
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~---------------------------------- 204 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLA---------------------------------- 204 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998865432
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 244 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....++.++++.|...+..++.|+|+++++++|++||+|++.
T Consensus 205 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 254 (256)
T TIGR02280 205 --LTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQFT 254 (256)
T ss_pred --HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCCC
Confidence 46777887777889999999999999999999999999999999988753
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-48 Score=396.17 Aligned_cols=245 Identities=30% Similarity=0.475 Sum_probs=219.1
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCcccCCCCchhhhhccCCCcccccchhHHHH
Q 004726 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (733)
Q Consensus 12 ~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (733)
+++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+....+.+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence 5789999999995 799999999999999999999999999999998 589999999998754211 1111222233445
Q ss_pred HHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCC
Q 004726 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (733)
Q Consensus 90 ~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i 169 (733)
+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|++||+++
T Consensus 81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159 (251)
T ss_pred H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 5 568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 004726 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249 (733)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 249 (733)
+|+||+++||||+|+|++++++++.++|+++++.+|.+++ .+|+
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~------------------------------------~~K~ 203 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK------------------------------------MAKK 203 (251)
T ss_pred CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHH
Confidence 9999999999999999999999999999999998875433 4577
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 250 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 250 ~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
+++.....+++++++.|...+..++.|+|+++++++|++||+|.+
T Consensus 204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 787777788999999999999999999999999999999998875
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=400.41 Aligned_cols=253 Identities=30% Similarity=0.422 Sum_probs=224.4
Q ss_pred cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc---cc
Q 004726 5 RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---VS 80 (733)
Q Consensus 5 ~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---~~ 80 (733)
.+.++. +++|++|||||| +.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........ ..
T Consensus 18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 678888 789999999999 5799999999999999999999999999999999999999999998743211111 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCC-ChhhhhhhccccCHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P-~~g~~~~l~r~~G~~~a 159 (733)
.+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..+|
T Consensus 97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a 175 (277)
T PRK08258 97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA 175 (277)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence 1222233555 678999999999999999999999999999999999999999999999995 78899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|+|++++++++.++++++++.|+.+++
T Consensus 176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 225 (277)
T PRK08258 176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHG------------------------------ 225 (277)
T ss_pred HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....+++++++.|...+..++.|+|+++++++|++||++++.
T Consensus 226 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 275 (277)
T PRK08258 226 ------MTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVFE 275 (277)
T ss_pred ------HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 45677877778889999999999999999999999999999999998763
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=396.62 Aligned_cols=255 Identities=24% Similarity=0.307 Sum_probs=226.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC--
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (733)
|| ..+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 1 ~~-~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (260)
T PRK07511 1 MS-AELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS 78 (260)
T ss_pred CC-CeeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence 77 3477888 7899999999995 79999999999999999999999999999999999999999999875421111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
....+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (260)
T PRK07511 79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ 157 (260)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence 1112223344566 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
++++|+++|++++|+||+++||||+|+|++++.+++.++++++++.+|.++
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~----------------------------- 208 (260)
T PRK07511 158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNAL----------------------------- 208 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998876432
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..+|+.++.+...++.++++.|.+.+..++.|+++++++++|+++|++++
T Consensus 209 -------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~ 258 (260)
T PRK07511 209 -------ARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY 258 (260)
T ss_pred -------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence 24577788777888999999999999999999999999999999998775
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=394.28 Aligned_cols=250 Identities=28% Similarity=0.410 Sum_probs=220.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+ +.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++..... .
T Consensus 1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~-- 75 (254)
T PRK08252 1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGER-P-- 75 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccc-h--
Confidence 55 4688888 7899999999995 699999999999999999999999999999999999999999998764211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.........++ ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 76 ~~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 76 SIPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred hhhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 01111111222 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|+|++++++++.++++++++.||.+++
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 202 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVA------------------------------ 202 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998865433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.....++++.++.|...+..++.++|+++++.+|++||+|++
T Consensus 203 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 203 ------ASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4567777777778999999999999999999999999999999988775
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=398.36 Aligned_cols=251 Identities=23% Similarity=0.320 Sum_probs=219.1
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC-c--
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-D-- 78 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~-- 78 (733)
|+++.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++....... .
T Consensus 7 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 85 (275)
T PRK09120 7 WDTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEIL 85 (275)
T ss_pred cccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHH
Confidence 35688998 7899999999995 79999999999999999999999999999999999999999999874321111 0
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
..........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 86 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 164 (275)
T PRK09120 86 QERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD 164 (275)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence 111111233455 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|||++++++++.+++++|++.+|.+++
T Consensus 165 a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------- 215 (275)
T PRK09120 165 ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLR----------------------------- 215 (275)
T ss_pred HHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHhhhh
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA 291 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~--~~~~~~~s~-~~~~~i~aF~~kr~ 291 (733)
.+|+.++.....++++.++.|.. .+..++.++ |+++++++|++||.
T Consensus 216 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 216 -------AAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred -------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 45777887778888888888764 355678998 89999999999988
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=399.80 Aligned_cols=257 Identities=24% Similarity=0.390 Sum_probs=222.3
Q ss_pred CCCcEEEEE--ecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC-
Q 004726 2 AAPRVTMEV--GNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (733)
Q Consensus 2 ~~~~v~~~~--~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (733)
||..+++-. .+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 3 ~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~ 82 (275)
T PLN02664 3 SYKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS 82 (275)
T ss_pred CccceEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccc
Confidence 455554221 26889999999995 79999999999999999999999999999999999999999999875421100
Q ss_pred --c-------ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh
Q 004726 78 --D-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (733)
Q Consensus 78 --~-------~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~ 148 (733)
. ...+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 161 (275)
T PLN02664 83 SGDRGRSGERLRRKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQ 161 (275)
T ss_pred cccchhhHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHH
Confidence 0 001111223455 568999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHH
Q 004726 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL 227 (733)
Q Consensus 149 ~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (733)
+|++++|..+|++|++||++++|+||+++||||+|||+ +++.+.+.++++++++.+|.+++
T Consensus 162 ~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~------------------ 223 (275)
T PLN02664 162 RLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVT------------------ 223 (275)
T ss_pred HHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence 99999999999999999999999999999999999985 88999999999999998875433
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 228 ~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....++.++++.|...+..++.|+|++|++++|++||+|.+.
T Consensus 224 ------------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~ 273 (275)
T PLN02664 224 ------------------GTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVFA 273 (275)
T ss_pred ------------------HHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCC
Confidence 45677777777889999999999999999999999999999999988753
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=397.74 Aligned_cols=255 Identities=25% Similarity=0.408 Sum_probs=225.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc-c
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD-V 79 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~-~ 79 (733)
.+.|.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++........ .
T Consensus 10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 35688888 7899999999995 7999999999999999999999999999999998 79999999998754211111 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 11222233455 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|||++++++++.++|++++..+|.+++
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 217 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLR------------------------------ 217 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999988765432
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....++++.++.|...+..++.|+|+++++.+|++||+|.+.
T Consensus 218 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~ 267 (269)
T PRK06127 218 ------AAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFK 267 (269)
T ss_pred ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCC
Confidence 45677777777889999999999999999999999999999999988753
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=392.70 Aligned_cols=247 Identities=26% Similarity=0.351 Sum_probs=215.4
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchh
Q 004726 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (733)
+..+..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus 3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (249)
T PRK07938 3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG 82 (249)
T ss_pred eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 44444378999999999988999999999999999999999999999999999999999999987542111111111122
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHc
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~lt 165 (733)
..+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++.+|++++|..++++|+++
T Consensus 83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt 158 (249)
T PRK07938 83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT 158 (249)
T ss_pred HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence 33555 56899999999999999999999999999999999999999999999986 456789999999999999999
Q ss_pred CCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHH
Q 004726 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (733)
|++++|+||+++||||+|||++++++++.++++++++.++.+++
T Consensus 159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------ 202 (249)
T PRK07938 159 AATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIR------------------------------------ 202 (249)
T ss_pred CCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhh
Q 004726 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (733)
Q Consensus 246 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~ 292 (733)
.+|+.++.....+++++++.|...+..++.++|++|++++|++||+|
T Consensus 203 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 203 AAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 45677777777888999999999999999999999999999999875
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=394.65 Aligned_cols=255 Identities=25% Similarity=0.350 Sum_probs=215.7
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|..+.++.++++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 1 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (259)
T TIGR01929 1 FTDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSG 80 (259)
T ss_pred CceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhh
Confidence 3457777635789999999995 6999999999999999999999999999999999 7999999999874321111000
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
........++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|+
T Consensus 81 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~ 159 (259)
T TIGR01929 81 VHRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAR 159 (259)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHH
Confidence 0001123445 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.+++
T Consensus 160 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 208 (259)
T TIGR01929 160 EIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR------------------------------- 208 (259)
T ss_pred HHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998876543
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++..... ....++.|...+..++.|+|+++++++|++||+|++.
T Consensus 209 -----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 257 (259)
T TIGR01929 209 -----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDFS 257 (259)
T ss_pred -----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Confidence 345555544332 3455666778899999999999999999999998753
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=394.16 Aligned_cols=251 Identities=31% Similarity=0.446 Sum_probs=225.8
Q ss_pred CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+.+.+++ +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++....... ..+
T Consensus 5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--~~~ 81 (259)
T PRK06688 5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP--PDE 81 (259)
T ss_pred CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch--HHH
Confidence 4688888 789999999999 689999999999999999999999999999999999999999999886532211 122
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
....++++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 82 ~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l 160 (259)
T PRK06688 82 LAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEM 160 (259)
T ss_pred HHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHH
Confidence 33345666 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
+++|++++|+||+++||||+|+|++++.+.+.++|++++..++.+++
T Consensus 161 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~--------------------------------- 207 (259)
T PRK06688 161 LLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR--------------------------------- 207 (259)
T ss_pred HHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999988764322
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++++++..|.+.+..++.|+++++++++|++||+|++
T Consensus 208 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 208 ---YTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred ---HHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 4567777777788999999999999999999999999999999988765
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-47 Score=391.53 Aligned_cols=252 Identities=27% Similarity=0.315 Sum_probs=213.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+++.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~ 77 (256)
T TIGR03210 1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG 77 (256)
T ss_pred CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence 56788998 7899999999995 7999999999999999999999999999999998 69999999998743211 1 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 1112234455 679999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||+|+|++++++++.++++++++.||.+++
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~------------------------------- 205 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIA------------------------------- 205 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875443
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++......... ...|...+..++.|+|+++++.+|++||+|.+.
T Consensus 206 -----~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 254 (256)
T TIGR03210 206 -----IAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEFR 254 (256)
T ss_pred -----HHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCCC
Confidence 3455555443322111 113456788899999999999999999988754
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=393.94 Aligned_cols=251 Identities=23% Similarity=0.285 Sum_probs=222.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.+ .|+++|+|||+|.|++||+|+|++++...........+
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07659 6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV 83 (260)
T ss_pred ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence 3588888 7899999999995 7999999999999999999 58899999999999999999999987542211111222
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l 162 (260)
T PRK07659 84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI 162 (260)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence 23344555 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
+++|++++|+||+++||||+|| ++++.+++.++++++++.|+.+++
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~--------------------------------- 208 (260)
T PRK07659 163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMI--------------------------------- 208 (260)
T ss_pred HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 9999999999999999999999 789999999999999988764432
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.....++++.++.|.+.+..++.|+++++++.+|++||+|++
T Consensus 209 ---~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 209 ---ETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998875
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=392.98 Aligned_cols=253 Identities=21% Similarity=0.296 Sum_probs=221.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCcccCCCCchhhhhccCCC
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~--g~~F~aG~Dl~~~~~~~~~~ 77 (733)
|||+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+ +|+|||||. |++||+|+|++++......
T Consensus 1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~- 77 (261)
T PRK11423 1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD- 77 (261)
T ss_pred CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence 9999999999 8899999999995 79999999999999999999887 999999986 3799999999987532111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
...+.....+++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|+.
T Consensus 78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 112223334556 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
++++|+++|++++|+||+++||||+|||++++++.+.++++++++.+|.+++
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------- 207 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA---------------------------- 207 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCchHHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 238 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~-~~~-~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.... .+. ...++.|.+.+..++.|+|+++++.+|++||+|++
T Consensus 208 --------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 208 --------VIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred --------HHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 34566654432 233 57788899999999999999999999999998875
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=390.95 Aligned_cols=251 Identities=23% Similarity=0.327 Sum_probs=223.6
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++++.++. +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++...........
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07260 1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS 79 (255)
T ss_pred CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence 45788888 7899999999995 799999999999999999999999999999999999999999998864221111111
Q ss_pred ---cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 82 ---~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
+.....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (255)
T PRK07260 80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR 158 (255)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence 122234555 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
+++|+++|++++|+||+++||||+++|++++.+.+.++++++++.++.+++
T Consensus 159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 209 (255)
T PRK07260 159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYA----------------------------- 209 (255)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998765433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~ 291 (733)
.+|+.++.....++++.+..|...+..++.|+++++++++|++||+
T Consensus 210 -------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 210 -------AIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -------HHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 4577777777788999999999999999999999999999999885
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-47 Score=394.32 Aligned_cols=257 Identities=19% Similarity=0.254 Sum_probs=224.5
Q ss_pred CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CcccCCCCchhhhhccCCCc-cc
Q 004726 4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-VS 80 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g--~~F~aG~Dl~~~~~~~~~~~-~~ 80 (733)
+.+.++.++++|++||||||+.|+||.+|+++|.+++++++.|+++|+|||||.| ++||+|.|++++........ ..
T Consensus 11 ~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~ 90 (278)
T PLN03214 11 PGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYA 90 (278)
T ss_pred CceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHH
Confidence 4688887458899999999988999999999999999999999999999999987 68999999998753211110 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCC-CCChhhhhhhccccCHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl-~P~~g~~~~l~r~~G~~~a 159 (733)
.+......++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|++++|+.+|
T Consensus 91 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a 169 (278)
T PLN03214 91 EFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVA 169 (278)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHH
Confidence 1111123345 5689999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|||.+++++.+.+++++++..++.+++
T Consensus 170 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 219 (278)
T PLN03214 170 ESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARA------------------------------ 219 (278)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998765433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|+.++.....+++++++.|.+.+..++.|+|+++++++|++|.+.+|.+.
T Consensus 220 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~~ 271 (278)
T PLN03214 220 ------ATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEKK 271 (278)
T ss_pred ------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4567777777778899999999999999999999999999999999887654
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=392.36 Aligned_cols=254 Identities=26% Similarity=0.362 Sum_probs=217.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~ 89 (273)
T PRK07396 12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD 89 (273)
T ss_pred CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence 56788888 7899999999995 7999999999999999999999999999999999 5999999999874311111 00
Q ss_pred ccch-hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~-~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.... ....++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..+|
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a 168 (273)
T PRK07396 90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA 168 (273)
T ss_pred hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence 0111 122344 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|||++++++++.++|+++++.+|.+++
T Consensus 169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 218 (273)
T PRK07396 169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR------------------------------ 218 (273)
T ss_pred HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|+.++.... ..+...+.|...+..++.|+|+++++.+|++||+|.+..
T Consensus 219 ------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~ 268 (273)
T PRK07396 219 ------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFSK 268 (273)
T ss_pred ------HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCCC
Confidence 34555555433 345555678888899999999999999999999987644
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=397.68 Aligned_cols=258 Identities=25% Similarity=0.346 Sum_probs=220.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC-C--
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-- 76 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-~-- 76 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence 7888899998 7899999999995 799999999999999999999999999999999999999999998753100 0
Q ss_pred ---------Cccc----ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCC
Q 004726 77 ---------GDVS----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG 143 (733)
Q Consensus 77 ---------~~~~----~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~ 143 (733)
.... .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~ 158 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE 158 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence 0000 1111123455 5689999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHH
Q 004726 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE 222 (733)
Q Consensus 144 ~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~ 222 (733)
+|++++|++++|..+|++|+++|++++|+||+++||||+|||++++++++.+++++++.. ++.+++
T Consensus 159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~------------- 225 (296)
T PRK08260 159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVA------------- 225 (296)
T ss_pred cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHH-------------
Confidence 999999999999999999999999999999999999999999999999999999999985 554332
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIV--HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~--~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|++++.... .... ....|...+..++.|+++++++.+|++||+|.+.+.
T Consensus 226 -----------------------~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~ 278 (296)
T PRK08260 226 -----------------------LTRQMMWRMAGADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK 278 (296)
T ss_pred -----------------------HHHHHHHhcccCCCcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence 44566665532 2233 345688889999999999999999999999887554
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=390.61 Aligned_cols=250 Identities=26% Similarity=0.409 Sum_probs=215.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
.+.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 85 (262)
T PRK06144 7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV 85 (262)
T ss_pred CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence 45788898 7899999999995 6999999999999999999999999999999998 6999999999875432111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCcccc-CCCCCChhhhhhhccccCHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~-~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.+.....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 1222234555 5689999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++++++|++++|+||+++||||+|+|++++.+++.++|+++++.|+.+++
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------ 214 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------ 214 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++..... .++.+.+.+..++.|+++++++.+|++||+|.+
T Consensus 215 ------~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 215 ------ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred ------HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 345555554333 334456778889999999999999999998875
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=391.29 Aligned_cols=251 Identities=25% Similarity=0.292 Sum_probs=211.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc-cc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (733)
|+.+.++.++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++........ ..
T Consensus 10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 89 (268)
T PRK07327 10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA 89 (268)
T ss_pred CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence 6778888745789999999996 799999999999999999999999999999999999999999998754211110 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.......+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (268)
T PRK07327 90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK 168 (268)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence 1122233455 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|++||++++|+||+++||||+|+|++++++++.++|+++++.++.+++
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 217 (268)
T PRK07327 169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR------------------------------- 217 (268)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875443
Q ss_pred chHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 241 MPQHQACLDVIEEGI---VHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~---~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++... ..+++..+..|. .++.|+++++++.+|++||+|.+
T Consensus 218 -----~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 218 -----WTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred -----HHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence 2344444321 123444444443 47789999999999999998875
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=386.51 Aligned_cols=248 Identities=28% Similarity=0.338 Sum_probs=216.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+ +.+.+++ +++|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++..... ...
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~ 77 (254)
T PRK08259 1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL 77 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence 66 4588888 7899999999995 699999999999999999999999999999999999999999998754211 111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.. ......+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.|.+|++++|++++|..+|
T Consensus 78 ~~--~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 78 HP--SGDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hh--hhcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 10 0011112 12347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|||++++++++.++|+++++.++.+++
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLR------------------------------ 204 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~ 291 (733)
.+|++++.....+++++++.|...+..++. +|++|++.+|++|++
T Consensus 205 ------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 205 ------ADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 456777777778899999999998888887 999999999998766
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=385.94 Aligned_cols=247 Identities=24% Similarity=0.403 Sum_probs=216.7
Q ss_pred CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC
Q 004726 1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA 76 (733)
Q Consensus 1 m~~~~v~~~~~~~---~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~ 76 (733)
|+ +.+.+++ ++ +|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||+|.|++||+|+|++++......
T Consensus 1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~ 78 (251)
T PRK06023 1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG 78 (251)
T ss_pred CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence 66 4688888 44 59999999995 7999999999999999999999999999999999999999999987542111
Q ss_pred CcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
. ..+.....+++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 155 (251)
T PRK06023 79 G--TSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH 155 (251)
T ss_pred c--hhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence 1 11222334556 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++++++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~--------------------------- 208 (251)
T PRK06023 156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ--------------------------- 208 (251)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875433
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~k 289 (733)
.+|++++... .++.+.++.|.+.+..++.|+++++++++|++|
T Consensus 209 ---------~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 209 ---------IARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred ---------HHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 3456665543 467888899999999999999999999999974
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=391.53 Aligned_cols=256 Identities=25% Similarity=0.340 Sum_probs=216.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc---
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--- 78 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~--- 78 (733)
++.+.++..+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++........
T Consensus 8 ~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 87 (276)
T PRK05864 8 MSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTR 87 (276)
T ss_pred CCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccc
Confidence 3467777546789999999995 799999999999999999999999999999999999999999998743211100
Q ss_pred cc---ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCC-Chhhhhhhcccc
Q 004726 79 VS---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLV 154 (733)
Q Consensus 79 ~~---~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P-~~g~~~~l~r~~ 154 (733)
.. ......++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++
T Consensus 88 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~v 166 (276)
T PRK05864 88 PTYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAI 166 (276)
T ss_pred hhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhh
Confidence 00 1112233455 568899999999999999999999999999999999999999999999997 789999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004726 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (733)
Q Consensus 155 G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (733)
|..+|++|+++|++++|+||+++||||+|+|++++++++.++|++|+..||.+++
T Consensus 167 G~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------- 221 (276)
T PRK05864 167 GSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIE------------------------- 221 (276)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999998875433
Q ss_pred HHhCCCchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~-~~~~~l~~E~~~~~-~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++..... ++++++..|..... .++.|+|+++++.+|++||+|.+.
T Consensus 222 -----------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 273 (276)
T PRK05864 222 -----------LTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVFT 273 (276)
T ss_pred -----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCC
Confidence 456666665554 67888877765432 357899999999999999988753
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=386.29 Aligned_cols=247 Identities=27% Similarity=0.311 Sum_probs=218.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++....... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~ 77 (249)
T PRK05870 1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A 77 (249)
T ss_pred CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence 55 4578888 7899999999995 79999999999999999999999999999999999999999999886532211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
........+.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 11122233445 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|+ +++++++.++|+++++.+|.+++
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL------------------------------ 204 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 9999999999999999999999999 68999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 004726 240 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~k 289 (733)
.+|+.++.... .+++++++.|...+..++.|+|+++++++|+++
T Consensus 205 ------~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 205 ------ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred ------HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 45777877777 789999999999999999999999999999974
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=383.19 Aligned_cols=250 Identities=28% Similarity=0.406 Sum_probs=223.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-~ 78 (258)
T PRK06190 1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-G 78 (258)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh-h
Confidence 8999999999 8899999999995 79999999999999999999999999999999999999999999885421111 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
. ....++++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 79 -~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 79 -A-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred -H-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 1 12234556 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+++|++++++++.++++++++.+|.+++
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR------------------------------ 205 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHhhhh
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRA 291 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~i~aF~~kr~ 291 (733)
.+|++++.....+++++++.|...+..++.| +..++...+|.++-+
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 254 (258)
T PRK06190 206 ------ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGR 254 (258)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh
Confidence 4577888878888999999999999999999 777777777777544
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=382.31 Aligned_cols=245 Identities=26% Similarity=0.362 Sum_probs=210.4
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchh
Q 004726 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (733)
|.+++ +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|.|++++... ....+...
T Consensus 3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~----~~~~~~~~ 77 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD----QCAAMLAS 77 (251)
T ss_pred EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch----hHHHHHHH
Confidence 67788 78999999999988999999999999999999999999999999999999999999975321 11111222
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHc
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~lt 165 (733)
..+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|..+|++|++|
T Consensus 78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt 155 (251)
T TIGR03189 78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS 155 (251)
T ss_pred HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence 33455 5789999999999999999999999999999999999999999999999997 457899999999999999999
Q ss_pred CCCCCHHHHHHcCCccEEcCcchHHHHHHHH-HHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHH
Q 004726 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~-a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (733)
|++++|+||+++||||+|+|+.+ +++.++ ++++++.||.+++
T Consensus 156 g~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~----------------------------------- 198 (251)
T TIGR03189 156 GRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLR----------------------------------- 198 (251)
T ss_pred CCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 99999999999999999997543 466666 6889988875433
Q ss_pred HHHHHHHHHhhcCCHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 245 QACLDVIEEGIVHGGYSGV-LKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~l-~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....++++++ ..|...+..++.|+|+++++++|++||+|.+.
T Consensus 199 -~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 249 (251)
T TIGR03189 199 -FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALWE 249 (251)
T ss_pred -HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCCC
Confidence 456677777677777776 47888899999999999999999999998753
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-46 Score=391.76 Aligned_cols=254 Identities=27% Similarity=0.309 Sum_probs=215.1
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCcc
Q 004726 3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+.|.++.+ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....... .
T Consensus 64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~ 142 (327)
T PLN02921 64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P 142 (327)
T ss_pred CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence 556788874 5889999999995 6999999999999999999999999999999999 7999999999874321110 0
Q ss_pred cccch-hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 80 ~~~~~-~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
..... ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~ 221 (327)
T PLN02921 143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK 221 (327)
T ss_pred hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 01111 112344 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|+|++++++++.++|++|++.++.+++
T Consensus 222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~----------------------------- 272 (327)
T PLN02921 222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIR----------------------------- 272 (327)
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875443
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++..... .....+.|...+..++.|+|++|++.+|++||+|.+.
T Consensus 273 -------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 273 -------VLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred -------HHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 345566554432 3333444557888899999999999999999998864
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=389.93 Aligned_cols=254 Identities=22% Similarity=0.207 Sum_probs=215.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchh-hhhc----c
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQKV----H 74 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~-~~~~----~ 74 (733)
|+|+.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|+++ +... .
T Consensus 2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence 7888899998 8899999999995 799999999999999999999999999999999999999999986 3210 0
Q ss_pred CCC---ccccc---c-h--hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccC-CCCCCh
Q 004726 75 GAG---DVSLM---P-D--VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGF 144 (733)
Q Consensus 75 ~~~---~~~~~---~-~--~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~-Gl~P~~ 144 (733)
... ....+ . . .....+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~- 158 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT- 158 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch-
Confidence 000 00111 0 0 012244 45889999999999999999999999999999999999999999997 98863
Q ss_pred hhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHH
Q 004726 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (733)
Q Consensus 145 g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 224 (733)
+++ .+++|..+|++|++||++++|+||+++||||+|||++++++++.++|++++..||.+++
T Consensus 159 -~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------- 220 (298)
T PRK12478 159 -GMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQ--------------- 220 (298)
T ss_pred -hHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 333 35699999999999999999999999999999999999999999999999998875443
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHhhhhhcCC
Q 004726 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV 295 (733)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~--------~~i~aF~~kr~~~~~ 295 (733)
..|++++.... .+++++++.|...+..++.|+|++ |++.+|++||+|.+.
T Consensus 221 ---------------------~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 221 ---------------------AQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred ---------------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 45677777665 468999999999999999999997 599999999999865
Q ss_pred C
Q 004726 296 P 296 (733)
Q Consensus 296 ~ 296 (733)
.
T Consensus 280 ~ 280 (298)
T PRK12478 280 D 280 (298)
T ss_pred c
Confidence 3
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-46 Score=384.79 Aligned_cols=251 Identities=27% Similarity=0.430 Sum_probs=220.0
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++.+.+++ +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++....... ...
T Consensus 2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~ 79 (262)
T PRK07509 2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKL 79 (262)
T ss_pred CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhh
Confidence 36788998 889999999999 579999999999999999999999999999999999999999999876421111 111
Q ss_pred cc-------hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhcccc
Q 004726 82 MP-------DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154 (733)
Q Consensus 82 ~~-------~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~ 154 (733)
.. ....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 158 (262)
T PRK07509 80 LFKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV 158 (262)
T ss_pred HhhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence 11 1122334 457899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004726 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (733)
Q Consensus 155 G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (733)
|..++++|+++|++++|+||+++||||+|++ ++.+++.++++++++.+|.+++
T Consensus 159 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~------------------------- 211 (262)
T PRK07509 159 RKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIA------------------------- 211 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 9999999999999999999999999999995 3688999999999998765433
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++++++..|.+.+..++.|+|+++++.+|++||+|.+
T Consensus 212 -----------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 212 -----------AAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567777777788899999999999999999999999999999998764
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-46 Score=383.85 Aligned_cols=253 Identities=36% Similarity=0.575 Sum_probs=219.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|.+..+.++. .++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 2 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~ 80 (257)
T COG1024 2 TTYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAA 80 (257)
T ss_pred CCCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHH
Confidence 3456788888 6779999999995 6999999999999999999999999999999999999999999998751111111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.......+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 81 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 81 ENLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 12223333466 67999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
++|++||+.++|+||+++||||+++++ +++++.+.++++++++ +|.++
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~------------------------------ 208 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLAL------------------------------ 208 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHH------------------------------
Confidence 999999999999999999999999985 7999999999999987 43322
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhc
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~ 293 (733)
..+|..++.+...++++.+..|...+...+.++|++|++++|++ |+|.
T Consensus 209 ------~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~ 256 (257)
T COG1024 209 ------AATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV 256 (257)
T ss_pred ------HHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence 24566777776666888999999999989999999999999999 6654
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=378.05 Aligned_cols=244 Identities=19% Similarity=0.248 Sum_probs=215.1
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccch
Q 004726 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|.|++++.... ...+..
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~ 76 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE 76 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence 46777 7899999999995 79999999999999999999999999999999999999999999875321 111222
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
....++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|. +++++++
T Consensus 77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll 154 (248)
T PRK06072 77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV 154 (248)
T ss_pred HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence 334555 56899999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHH
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (733)
+|++++|+||+++||||++ +++++++.++|+++++.|+.+++
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~----------------------------------- 196 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYI----------------------------------- 196 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 9999999999999999963 46789999999999988765432
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||+|.+.
T Consensus 197 -~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 246 (248)
T PRK06072 197 -AAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKFK 246 (248)
T ss_pred -HHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCC
Confidence 45677777777789999999999999999999999999999999988753
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=374.92 Aligned_cols=238 Identities=25% Similarity=0.383 Sum_probs=208.7
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccch
Q 004726 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.+ ++|+|||||.|++||+|+|+++... ...+..
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~ 73 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD 73 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence 56777 7899999999995 7999999999999999999865 8999999999999999999985311 111222
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
...+++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l 152 (243)
T PRK07854 74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL 152 (243)
T ss_pred HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence 334555 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHH
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (733)
||++++|+||+++||||+|++ + +++.++++++++.++.+++
T Consensus 153 tg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~~~a~~----------------------------------- 193 (243)
T PRK07854 153 GAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLAPLALQ----------------------------------- 193 (243)
T ss_pred cCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999975 2 2789999999998865433
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.. .+++++++.|...+..++.|+|+++++++|++||+|.+
T Consensus 194 -~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 194 -HAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred -HHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 456666654 56889999999999999999999999999999998875
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=376.42 Aligned_cols=251 Identities=18% Similarity=0.208 Sum_probs=213.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++ +++|+|||+|.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07112 1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA 77 (255)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence 7899999999 8899999999995 79999999999999999998 369999999999999999999987542221111
Q ss_pred c-ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 80 ~-~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
. .......+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus 78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~ 155 (255)
T PRK07112 78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK 155 (255)
T ss_pred hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence 1 1112233555 678999999999999999999999999999999999999999999999999865 567999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
+++|+++|++++|+||+++||||+|+|+++. .+.++++++++.+|.+++
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~----------------------------- 204 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVA----------------------------- 204 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHH-----------------------------
Confidence 9999999999999999999999999987653 578899999988875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.. ...+.++++.|.+.+..++.|+|+++++.+|++||+|.+.
T Consensus 205 -------~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 253 (255)
T PRK07112 205 -------RYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPWE 253 (255)
T ss_pred -------HHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCCC
Confidence 345555543 4457888999999999999999999999999999987653
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=374.06 Aligned_cols=245 Identities=21% Similarity=0.284 Sum_probs=220.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|.|+.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 78 (249)
T PRK07110 2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK-- 78 (249)
T ss_pred CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence 6788888998 8899999999995 79999999999999999999999999999999999999999999875432211
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+. . .+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 79 ~~~~-~-~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 GTFT-E-ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred hhHh-h-HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 1111 1 3555 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|+|++++++++.++++++++.|+.+++
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV------------------------------ 205 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~ 287 (733)
.+|+.++.....+++++++.|...+..++.|+|++|++....
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 206 ------LLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 567788888888999999999999999999999999998753
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=380.27 Aligned_cols=244 Identities=35% Similarity=0.557 Sum_probs=222.0
Q ss_pred EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchh
Q 004726 7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (733)
Q Consensus 7 ~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (733)
.++. +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+||++|.+++||+|.|++++... .......+...
T Consensus 1 ~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~ 78 (245)
T PF00378_consen 1 KYEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS-DEEEAREFFRR 78 (245)
T ss_dssp EEEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH-HHHHHHHHHHH
T ss_pred CEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc-ccccccccchh
Confidence 3677 789999999999 78999999999999999999999999999999999999999999998775 22223344455
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHc
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~lt 165 (733)
...++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++++++
T Consensus 79 ~~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 79 FQELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 66777 67999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHH
Q 004726 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (733)
|++++|+||+++||||+|+|++++.+.+.+++++++..++.+++
T Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------------ 201 (245)
T PF00378_consen 158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR------------------------------------ 201 (245)
T ss_dssp TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH------------------------------------
T ss_pred cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999998865433
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 004726 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (733)
Q Consensus 246 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~k 289 (733)
.+|+.++......+.+.++.|.+.+..++.++|++|++++|+||
T Consensus 202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 45677888778889999999999999999999999999999987
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=383.78 Aligned_cols=276 Identities=31% Similarity=0.527 Sum_probs=246.0
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
+++||+|||+|.||++||..|+++|++|++||++++.++++.+.+.+........+. ....++++..++++ +.+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 468999999999999999999999999999999999988877655443332222111 01233556666776 458
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~ 465 (733)
++||+||+|||++.++++.+++++...++++++|+|+||+++++++++.+..+.+++++||++|++.++++|+++++.|+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEc-CCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004726 466 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG 539 (733)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v~-d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p---~Gpf~~~D~~G 539 (733)
+++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++| ++|++||.++ .++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999995 8899999999999999999999997 5999999999 799998 69999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccccccCCC
Q 004726 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 587 (733)
Q Consensus 540 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 587 (733)
+|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~ 285 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE 285 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence 999999999999999887779999999999999999999999999754
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=377.89 Aligned_cols=250 Identities=25% Similarity=0.345 Sum_probs=217.9
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhcc-CCCc-cc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS 80 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~-~~ 80 (733)
+.+.++. +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.... .... ..
T Consensus 6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (260)
T PRK07827 6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV 84 (260)
T ss_pred cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence 4577887 7899999999995 79999999999999999999999999999999999999999999875421 1110 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++ ..+++
T Consensus 85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~ 162 (260)
T PRK07827 85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAA 162 (260)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHH
Confidence 1222334555 678999999999999999999999999999999999999999999999999999999999875 56899
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||++++ ++.+++.++++++++.++.+++
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~------------------------------- 209 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLA------------------------------- 209 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999974 5899999999999988765432
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++......+++.++.|...+..++.|+++++++++|++||+|++
T Consensus 210 -----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~ 258 (260)
T PRK07827 210 -----ESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW 258 (260)
T ss_pred -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 5677788877788899999999999999999999999999999988764
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=390.52 Aligned_cols=288 Identities=23% Similarity=0.342 Sum_probs=221.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
.+.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 2 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (342)
T PRK05617 2 EDEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPL 80 (342)
T ss_pred CceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCch
Confidence 35688888 7899999999995 7999999999999999999999999999999999 8999999999875421111000
Q ss_pred ---ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 81 ---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 81 ---~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
.+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus 81 ~~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~ 158 (342)
T PRK05617 81 AADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-A 158 (342)
T ss_pred hHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-H
Confidence 1112223455 5689999999999999999999999999999999999999999999999999999999999977 7
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHH------------HHHccC---c--------hhhhhhhcc
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL------------DIAARR---K--------PWIRSLHRT 214 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------~~a~~~---~--------~~~~~~~~~ 214 (733)
+|++|++||++++|+||+++||||+|+|++++.+...++++ .+...+ | ..+......
T Consensus 159 ~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 238 (342)
T PRK05617 159 LGTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG 238 (342)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC
Confidence 89999999999999999999999999999988776433321 011100 0 001111100
Q ss_pred CCCCCcHHHHHHHH-----HHHHH-HHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-
Q 004726 215 DKLGSLSEAREVLK-----LARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF- 287 (733)
Q Consensus 215 ~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~- 287 (733)
..+......++ .+... .+.....-.+...+|++++.+...+++++++.|...+..++.|+|+++++++|+
T Consensus 239 ---~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ 315 (342)
T PRK05617 239 ---DTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLI 315 (342)
T ss_pred ---CCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEE
Confidence 01111111111 01111 223334445777889999998888999999999999999999999999999997
Q ss_pred hh-hhhcCCC
Q 004726 288 AQ-RATSKVP 296 (733)
Q Consensus 288 ~k-r~~~~~~ 296 (733)
+| |+|++..
T Consensus 316 ek~r~p~~~~ 325 (342)
T PRK05617 316 DKDRNPKWSP 325 (342)
T ss_pred cCCCCCCCCC
Confidence 76 7777644
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=379.67 Aligned_cols=255 Identities=24% Similarity=0.299 Sum_probs=213.1
Q ss_pred CcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CcccCCCCchhhhhcc
Q 004726 4 PRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH 74 (733)
Q Consensus 4 ~~v~~~~~-~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-------~~F~aG~Dl~~~~~~~ 74 (733)
.+++++++ +++|++||||||+ .|++|++|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 23 ~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~ 102 (302)
T PRK08321 23 TDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDG 102 (302)
T ss_pred eeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcccc
Confidence 35777763 5789999999995 6999999999999999999999999999999998 5999999999763210
Q ss_pred ----CCC--cc-c--ccchh-HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeCccccCCCCCC
Q 004726 75 ----GAG--DV-S--LMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPG 143 (733)
Q Consensus 75 ----~~~--~~-~--~~~~~-~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~P~ 143 (733)
... .. . ..... ..+++ +.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 103 YQYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred ccccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 000 00 0 01011 11233 56889999999999999999999999999999999 69999999999999999
Q ss_pred hhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHH
Q 004726 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 223 (733)
Q Consensus 144 ~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 223 (733)
++++++|+|++|..+|++|++||++++|+||+++||||++||++++++++.+++++|++.++.+++
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------- 247 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR-------------- 247 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999998875443
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 224 REVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++..... ..+....|.+.+..++.++|+++++.+|++||+|.+..
T Consensus 248 ----------------------~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~~ 297 (302)
T PRK08321 248 ----------------------MLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSD 297 (302)
T ss_pred ----------------------HHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 345666554433 33445568889999999999999999999999887543
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=387.41 Aligned_cols=290 Identities=22% Similarity=0.254 Sum_probs=217.6
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc-cc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (733)
++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|++||+|||+|.|++||+|+|++++........ ..
T Consensus 10 ~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 88 (379)
T PLN02874 10 EEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL 88 (379)
T ss_pred CCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence 35688888 7899999999995 699999999999999999999999999999999999999999998754211111 01
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
........++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. .++
T Consensus 89 ~~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~ 166 (379)
T PLN02874 89 EVVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE 166 (379)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence 1111112334 56889999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccC----------------------CCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTD----------------------KLG 218 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~----------------------~~~ 218 (733)
+|++||++++|+||+++||||+|||++++.+.+.++. ++...+...+....+.- ...
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 245 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLL-NLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD 245 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988876322221 00000000000000000 000
Q ss_pred CcHHHHHHHHH---------HHHHHH-HhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 004726 219 SLSEAREVLKL---------ARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHV 285 (733)
Q Consensus 219 ~~~~~~~~~~~---------~~~~~~-~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~i~a 285 (733)
........+.. +....+ .....-.+...+|++++.+...+++++++.|......++. ++|++|++++
T Consensus 246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A 325 (379)
T PLN02874 246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA 325 (379)
T ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence 11111111110 112222 2223334667889999999888999999999888887877 9999999999
Q ss_pred HH-hh-hhhcCCC
Q 004726 286 FF-AQ-RATSKVP 296 (733)
Q Consensus 286 F~-~k-r~~~~~~ 296 (733)
|+ +| |+|++.+
T Consensus 326 flidK~r~P~w~~ 338 (379)
T PLN02874 326 LVIDKDNAPKWNP 338 (379)
T ss_pred EEEcCCCCCCCCC
Confidence 97 77 8888755
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=397.27 Aligned_cols=255 Identities=15% Similarity=0.153 Sum_probs=221.5
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCCC-cccCCC
Q 004726 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF 65 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~~-d~~v~~vvl~g~g~-~F~aG~ 65 (733)
|++|.++.+ +++|++||||||+ . |+||.+|+++|.++++.++. |+++|+|||||.|+ .||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 555666553 5789999999994 5 79999999999999999986 79999999999994 999999
Q ss_pred CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeC-Ccccchh-hHHhhhcCEEEEe-------CCceEeCccc
Q 004726 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL 136 (733)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~-G~a~GgG-~~lalacD~ria~-------~~a~f~~pe~ 136 (733)
|++.+.. .............+.++ .+|.++||||||+|| |+|+||| ++|+++||+|||+ ++++|++||+
T Consensus 339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~ 416 (550)
T PRK08184 339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL 416 (550)
T ss_pred Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence 9874321 11100111122334455 679999999999997 9999999 9999999999999 9999999999
Q ss_pred cCCCCCChhhhhhhccc-cCHHHHHHH--HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhc
Q 004726 137 TLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (733)
Q Consensus 137 ~~Gl~P~~g~~~~l~r~-~G~~~a~~l--~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~ 213 (733)
++|++|++|++++|+|+ +|..+|+++ ++||++++|+||+++||||+|+|++++++++.++|+++++.||.+++
T Consensus 417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~---- 492 (550)
T PRK08184 417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALT---- 492 (550)
T ss_pred cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHH----
Confidence 99999999999999998 699999997 58999999999999999999999999999999999999999876543
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhh
Q 004726 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (733)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~k 289 (733)
.+|++++.+...+++++ +..|.+.+..+++|+|++| ++++|++|
T Consensus 493 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 540 (550)
T PRK08184 493 --------------------------------GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG 540 (550)
T ss_pred --------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence 56788889889999999 9999999999999999999 99999999
Q ss_pred hhhcCC
Q 004726 290 RATSKV 295 (733)
Q Consensus 290 r~~~~~ 295 (733)
|+|+..
T Consensus 541 r~~~f~ 546 (550)
T PRK08184 541 QKAQFD 546 (550)
T ss_pred CCCCCC
Confidence 998753
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=394.71 Aligned_cols=254 Identities=16% Similarity=0.134 Sum_probs=220.5
Q ss_pred CCcEEEEEe-cCcEEEEEeCCC-CC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCc-ccCCC
Q 004726 3 APRVTMEVG-NDGVAIITLINP-PV-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF 65 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p-~~-------------Nal~~~~~~~l~~~l~~~~-~d~~v~~vvl~g~g~~-F~aG~ 65 (733)
|.+|.+..+ +++|++|||||| +. |+||.+|+++|.+++++++ +|+++|+|||||.|+. ||+|+
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 344444432 678999999999 47 9999999999999999998 4599999999999987 99999
Q ss_pred CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe-CCcccchh-hHHhhhcCEEEE-------eCCceEeCccc
Q 004726 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL 136 (733)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav-~G~a~GgG-~~lalacD~ria-------~~~a~f~~pe~ 136 (733)
|++.+... ............++++ .+|.++||||||+| ||+|+||| ++|+++||+||+ +++++|++||+
T Consensus 335 Dl~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~ 412 (546)
T TIGR03222 335 DALLEAHK-DHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL 412 (546)
T ss_pred Cccccccc-cchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence 99843211 1111111122234466 67999999999999 89999999 999999999999 89999999999
Q ss_pred cCCCCCChhhhhhhcccc-CHHHH--HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhc
Q 004726 137 TLGVIPGFGGTQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (733)
Q Consensus 137 ~~Gl~P~~g~~~~l~r~~-G~~~a--~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~ 213 (733)
++|++|++|++++|++++ |..++ ++|++||++++|+||+++|||++|+|++++++++.++|++++..+|.+++
T Consensus 413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---- 488 (546)
T TIGR03222 413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALT---- 488 (546)
T ss_pred ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHH----
Confidence 999999999999999998 99999 55999999999999999999999999999999999999999999876543
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhh
Q 004726 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (733)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~k 289 (733)
.+|++++.+...+++.+ +..|.+.|..++.|+|++| ++++|++|
T Consensus 489 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 536 (546)
T TIGR03222 489 --------------------------------GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG 536 (546)
T ss_pred --------------------------------HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence 45778888889999999 9999999999999999999 99999999
Q ss_pred hhhcC
Q 004726 290 RATSK 294 (733)
Q Consensus 290 r~~~~ 294 (733)
|+|..
T Consensus 537 r~p~f 541 (546)
T TIGR03222 537 KKAQF 541 (546)
T ss_pred CCCCC
Confidence 99874
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=336.66 Aligned_cols=246 Identities=29% Similarity=0.458 Sum_probs=220.6
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCcccCCCCchhhhhccCCCcccccchhHHHH
Q 004726 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (733)
Q Consensus 12 ~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (733)
+.||.+|-+||| +.|+++..|+++|.++++.+..|+.+|+|+|.+. +..||+|+||++...++.. +...+....+.+
T Consensus 38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~-Ev~~fV~~lR~~ 116 (291)
T KOG1679|consen 38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPS-EVTRFVNGLRGL 116 (291)
T ss_pred CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHH-HHHHHHHHHHHH
Confidence 678999999999 6899999999999999999999999999999754 6789999999998776433 244455556666
Q ss_pred HHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCC
Q 004726 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (733)
Q Consensus 90 ~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i 169 (733)
+ ..|+++|.||||+|.|.++|||+||+|+||+|+|++++++|++|.+++|+|+.|||++|||.+|...|+|+++|++.+
T Consensus 117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl 195 (291)
T KOG1679|consen 117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL 195 (291)
T ss_pred H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence 7 669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCccEEcCcc----hHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHH
Q 004726 170 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (733)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~----~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (733)
++.||..+||||+||... .....+.++|+++.-+.|.+ ++
T Consensus 196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPia------------------------------------vr 239 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIA------------------------------------VR 239 (291)
T ss_pred cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchh------------------------------------hh
Confidence 999999999999999765 56677888888877665543 33
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 246 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..|.+|+.+.+.++..++..|..+|++...+.|..|++.+|.+||+|...
T Consensus 240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~ 289 (291)
T KOG1679|consen 240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK 289 (291)
T ss_pred HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence 56789999999999999999999999999999999999999999998753
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=350.47 Aligned_cols=205 Identities=29% Similarity=0.465 Sum_probs=182.4
Q ss_pred CCcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 3 APRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 3 ~~~v~~~~~----~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|++|.++.. +++|++||||||+.|++|++|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..... ..
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~ 80 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-QE 80 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh-hh
Confidence 456677663 4789999999998899999999999999999999999999999999999999999998754321 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
........++++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..+
T Consensus 81 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~ 159 (222)
T PRK05869 81 ADTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSR 159 (222)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHH
Confidence 111222334566 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhh
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~ 209 (733)
+++++++|++++|+||+++||||+|+|++++++++.+++++++..++.+++
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~ 210 (222)
T PRK05869 160 AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALA 210 (222)
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999998875543
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=372.97 Aligned_cols=249 Identities=21% Similarity=0.323 Sum_probs=207.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc--
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS-- 80 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~-- 80 (733)
+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++..........
T Consensus 37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 3577888 7899999999995 69999999999999999999999999999999999999999999886432111111
Q ss_pred -ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 81 -LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 -~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.+.....+++ ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus 116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a 193 (401)
T PLN02157 116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG 193 (401)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence 1111111233 56899999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||++||++++ +++.+++.+++..++..++
T Consensus 194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~------------------------------ 242 (401)
T PLN02157 194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVE------------------------------ 242 (401)
T ss_pred HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHH------------------------------
Confidence 999999999999999999999999999998 6777999998876653322
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH---Hhhhhhc
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF---FAQRATS 293 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF---~~kr~~~ 293 (733)
.+|+.+... ..+....+..|...+..++.+++.+|.+.+| .+||++.
T Consensus 243 ------~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~ 292 (401)
T PLN02157 243 ------SCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDT 292 (401)
T ss_pred ------HHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccchH
Confidence 334444433 2345567778889999999999999999999 5555443
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=360.78 Aligned_cols=238 Identities=26% Similarity=0.321 Sum_probs=203.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC---
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--- 76 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~--- 76 (733)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence 8999999998 8899999999995 6999999999999999999999999999999999999999999987421110
Q ss_pred --------------Cccc-cc---chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccC
Q 004726 77 --------------GDVS-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL 138 (733)
Q Consensus 77 --------------~~~~-~~---~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~ 138 (733)
.... .+ .....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 01 01122344 56889999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCC
Q 004726 139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG 218 (733)
Q Consensus 139 Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~ 218 (733)
|+ |+ .+++++++++|+.++++|++||++++|+||+++||||+|||++++++++.++++++++.++.+++
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------- 227 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLR--------- 227 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------
Confidence 98 54 45777899999999999999999999999999999999999999999999999999998875433
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHH
Q 004726 219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT 278 (733)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~~l~~E~~~~~~~~-~s~~ 278 (733)
.+|+.++..... ++++++..|.......+ .+++
T Consensus 228 ---------------------------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 228 ---------------------------LTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred ---------------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 456677766654 68999999999888877 6665
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=359.91 Aligned_cols=291 Identities=21% Similarity=0.290 Sum_probs=224.4
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|.+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..........
T Consensus 7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~ 85 (381)
T PLN02988 7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR 85 (381)
T ss_pred cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence 345788887 7899999999996 69999999999999999999999999999999999999999999875321111110
Q ss_pred ---ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 81 ---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 81 ---~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
.+......+. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus 86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~- 163 (381)
T PLN02988 86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF- 163 (381)
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence 1111111223 46889999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhcc---CC---C--------------
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT---DK---L-------------- 217 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~---~~---~-------------- 217 (733)
.+++|++||++++|+||+++||||++||++++.+.+.+++ +++..++..++..... .. .
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f 242 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF 242 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999988888 6666554433322110 00 0
Q ss_pred --CCcHHHHHHHHH---------HHHHHHHhCCCch-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHH
Q 004726 218 --GSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL 282 (733)
Q Consensus 218 --~~~~~~~~~~~~---------~~~~~~~~~~~~~-a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~ 282 (733)
..+......+.. ++...+.....-| +...+.+.++.+...++.+.++.|.+.-..+.. ++|+.||
T Consensus 243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG 322 (381)
T PLN02988 243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG 322 (381)
T ss_pred CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 011111111111 1111111122223 345667788889999999999999999999988 7999999
Q ss_pred HHHHHh-h-hhhcCCC
Q 004726 283 VHVFFA-Q-RATSKVP 296 (733)
Q Consensus 283 i~aF~~-k-r~~~~~~ 296 (733)
|+|-+- | +.|+|.|
T Consensus 323 VRA~LiDKd~~P~W~p 338 (381)
T PLN02988 323 CRAILVDKDKNPKWEP 338 (381)
T ss_pred HHHHhcCCCCCCCCCC
Confidence 999886 3 4566655
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=347.69 Aligned_cols=247 Identities=22% Similarity=0.254 Sum_probs=196.6
Q ss_pred CCcEEEEEe-cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCcccCCCCchhhhhcc
Q 004726 3 APRVTMEVG-NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVH 74 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~-----d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~ 74 (733)
|.++.++.+ +++|++|||| | +.|+||.+|+++|.+++++++. |+++|+|||+|. |++||+|+|++++....
T Consensus 14 ~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~ 92 (287)
T PRK08788 14 LSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELI 92 (287)
T ss_pred cCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhc
Confidence 344444442 6889999996 6 6899999999999999999998 899999999999 78999999999875321
Q ss_pred CCCcccccchh---HHHHHHHHHh---cCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh
Q 004726 75 GAGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (733)
Q Consensus 75 ~~~~~~~~~~~---~~~~~~~~i~---~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~ 148 (733)
.......+... ..+.+ .++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~ 171 (287)
T PRK08788 93 RAGDRDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYS 171 (287)
T ss_pred cccchHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHH
Confidence 11111111111 11222 2233 79999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHH
Q 004726 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228 (733)
Q Consensus 149 ~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (733)
+|++++|..+|++|++||++++|+||+++||||+++|++++++++.+++++++.. +.+.+
T Consensus 172 ~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~------------------- 231 (287)
T PRK08788 172 FLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR------------------- 231 (287)
T ss_pred HHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH-------------------
Confidence 9999999999999999999999999999999999999999999999999999976 32211
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHh
Q 004726 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFA 288 (733)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~-~~~~~i~aF~~ 288 (733)
++|+..+.....++++.++.|...+..++++. ...+-+..|..
T Consensus 232 -----------------a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 232 -----------------AMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred -----------------HHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 22333334444678888888887777655554 44556666653
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=342.72 Aligned_cols=201 Identities=27% Similarity=0.376 Sum_probs=178.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+ +.+.++. +++|++||||||+.|++|++|+++|.++++.++ +++|+||++|.|++||+|+|++++... .....
T Consensus 1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~ 74 (229)
T PRK06213 1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI 74 (229)
T ss_pred Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence 53 5688888 789999999999889999999999999999998 467999999999999999999987542 11111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.+.....+++ .++.++||||||+|||+|+|||++|+++|||||++++ ++|++||+++|++|.++++.++++++|...+
T Consensus 75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 2223344566 6789999999999999999999999999999999999 9999999999999888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhh
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI 208 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~ 208 (733)
++|+++|++++|+||+++||||+|+|++++.+.+.++++++++.++.++
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~ 202 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAH 202 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999999999999999999887543
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=351.44 Aligned_cols=204 Identities=25% Similarity=0.337 Sum_probs=176.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC--
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (733)
++|+++.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 7 ~~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~ 85 (302)
T PRK08272 7 DNLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGG 85 (302)
T ss_pred CCCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccc
Confidence 3477899998 7899999999994 79999999999999999999999999999999999999999999875422100
Q ss_pred -c----------------ccc-----cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCcc
Q 004726 78 -D----------------VSL-----MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE 135 (733)
Q Consensus 78 -~----------------~~~-----~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe 135 (733)
. ... ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe 164 (302)
T PRK08272 86 GGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPP 164 (302)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcc
Confidence 0 000 011223455 56889999999999999999999999999999999999999999
Q ss_pred ccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhh
Q 004726 136 LTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (733)
Q Consensus 136 ~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~ 209 (733)
+++|.+|.. ..+++++|+.+|++|++||++++|+||+++||||+|||++++++++.++|++|+..||.+++
T Consensus 165 ~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~ 235 (302)
T PRK08272 165 TRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLA 235 (302)
T ss_pred hhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 998666643 35788999999999999999999999999999999999999999999999999998876554
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=342.79 Aligned_cols=289 Identities=22% Similarity=0.254 Sum_probs=218.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc---c
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V 79 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---~ 79 (733)
+.|.++. .+++++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++........ .
T Consensus 42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4577888 7899999999995 699999999999999999999999999999999999999999998864321111 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+.....++. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|+.|. .+
T Consensus 121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g 198 (407)
T PLN02851 121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG 198 (407)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence 11112222334 46789999999999999999999999999999999999999999999999999999999999997 59
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhh---ccC-------------------CC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH---RTD-------------------KL 217 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~---~~~-------------------~~ 217 (733)
++|++||++++|+||+++||+|+++|.+++ +.+.+.+.++...++..+.... ... ..
T Consensus 199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999887 5566666555443322222110 000 00
Q ss_pred CCcHHHHHHHHH---------HHHHHHHhCCCch-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHHHHHHHH
Q 004726 218 GSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVH 284 (733)
Q Consensus 218 ~~~~~~~~~~~~---------~~~~~~~~~~~~~-a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~---~s~~~~~~i~ 284 (733)
..+......++. ++...+.....-| +...+.+.++.+...++++.++.|.+.-..++ .++|+.|||+
T Consensus 278 ~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR 357 (407)
T PLN02851 278 DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR 357 (407)
T ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 111111111111 1111121122223 44566778888999999999999999988887 4899999999
Q ss_pred HHHhh--hhhcCCC
Q 004726 285 VFFAQ--RATSKVP 296 (733)
Q Consensus 285 aF~~k--r~~~~~~ 296 (733)
|-+-. ++|+|.+
T Consensus 358 A~LIDKd~~P~W~p 371 (407)
T PLN02851 358 ARLVDKDFAPKWDP 371 (407)
T ss_pred HHhcCCCCCCCCCC
Confidence 98863 4555554
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=334.70 Aligned_cols=191 Identities=25% Similarity=0.356 Sum_probs=167.6
Q ss_pred EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCC--cccccchhHHHHH
Q 004726 15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG--DVSLMPDVSVELV 90 (733)
Q Consensus 15 i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~~ 90 (733)
+++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... ....+....++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 5679999995 7999999999999999999999999999999999 6999999999886532111 1111222233555
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCC
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~ 170 (733)
+.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+++|++++
T Consensus 118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccEEcCcchH------------HHHHHHHHHHHHccCch
Q 004726 171 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP 206 (733)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l------------~~~a~~~a~~~a~~~~~ 206 (733)
|+||+++||||+|+|++++ ++.+.++++.+...++.
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 244 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKA 244 (360)
T ss_pred HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcc
Confidence 9999999999999999888 78888888877776543
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=310.34 Aligned_cols=255 Identities=24% Similarity=0.340 Sum_probs=220.9
Q ss_pred CCcEEEEE--ecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC----
Q 004726 3 APRVTMEV--GNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---- 75 (733)
Q Consensus 3 ~~~v~~~~--~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~---- 75 (733)
|+.+.+.+ .+..|.++.|||| +.|++|..|+.|+.++|+.+..||++|+|||+|+|++||+|+|+..+.....
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 55455553 2556999999999 6899999999999999999999999999999999999999999877654311
Q ss_pred CCc-------ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh
Q 004726 76 AGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (733)
Q Consensus 76 ~~~-------~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~ 148 (733)
..+ ..+++...++.+ ..|++||||||++|||+|+|+|+.|..|||+|+++++|.|+.-|+.+|+..+.|..+
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 111 122333455666 579999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccC-HHHHHHHHHcCCCCCHHHHHHcCCccEEcC-cchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHH
Q 004726 149 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 226 (733)
Q Consensus 149 ~l~r~~G-~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (733)
|||..+| ...++++.+|++.++|.||++.|||.+|+| .+++++.+..+|+.|+.++|.+..
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq----------------- 239 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ----------------- 239 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence 9999999 899999999999999999999999999997 478999999999999999886433
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 227 ~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..|+.+..+.+++.++.|..-+-+-...+.|+|..+.+.+-++|+++..
T Consensus 240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~t 288 (292)
T KOG1681|consen 240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVT 288 (292)
T ss_pred -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 3467788888899999999888888888899999999999998777654
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=333.88 Aligned_cols=262 Identities=25% Similarity=0.348 Sum_probs=244.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
|++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..+..+.+.|.++..+....++++..++++ ++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 568999999999999999999999999999999999999999999999999999999888888888888888888 5689
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+|+|++.++++.+++++.+.++++++++|+||+.+++++++.+.++.++++.||++|++.++++|++++..|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhh--
Q 004726 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLA-- 538 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p---~Gpf~~~D~~-- 538 (733)
++++.+.++++.+|++|+++ ++.|||++||++.++++||+.++++| +++++||.++ .++|++ +|||+++|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 99999999999999999999 58999999999999999999999997 5999999999 789988 8999999987
Q ss_pred -chHHHHHHHHHHHHhCCCCCC-CcHHHHHHHH
Q 004726 539 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLK 569 (733)
Q Consensus 539 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~ 569 (733)
|++.+......++.++++..+ |+|++++|++
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 899999999899988887555 8888888877
|
|
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=324.22 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=169.0
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCcccCCCCchhhhhccCCCc-ccccc
Q 004726 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (733)
++++. +++|++|+||||+.|++|.+|+++|.++++.++.|++++ +||++|.|++||+|+|++++........ ...+.
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 46777 789999999999789999999999999999999998875 7777999999999999998643211111 11122
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeCccccCCCC-CChhhhhhhccccCHHHH-H
Q 004726 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVI-PGFGGTQRLPRLVGLSKA-I 160 (733)
Q Consensus 84 ~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~-P~~g~~~~l~r~~G~~~a-~ 160 (733)
....+++ .++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |+++ +.+|++++|..++ +
T Consensus 81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~-~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYF-MALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHH-HHHHHHHcChHHHHH
Confidence 3344566 56999999999999999999999999999999998 568999999999997 6554 7899999999999 6
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCc-chHHHHHHHHHHHHHccCc
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRK 205 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~ 205 (733)
+|+++|++++|+||+++||||+|+|+ +++++++.++|+++++.++
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~ 204 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKW 204 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999985 6899999999999998754
|
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=295.42 Aligned_cols=252 Identities=28% Similarity=0.379 Sum_probs=203.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CcccCCCCchhhhhc---cC
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKV---HG 75 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~--g-~~F~aG~Dl~~~~~~---~~ 75 (733)
|+.|.++...++|+.||+|||. +|++.|..+.||.++|..++.|++|.+|||||. | ..||+|+|-+-.... ..
T Consensus 17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 6788999844899999999995 799999999999999999999999999999985 4 689999998754331 11
Q ss_pred CCcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
+....++. ..+ +++.|+.+||||||.|+|+++|||-.|-+.||+.||+++|+|+....++|-+-++.++..|.|++|
T Consensus 97 d~~~~rLn--vLd-lQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 97 DDGIPRLN--VLD-LQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CccCcccc--hhh-HHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 11111111 112 236789999999999999999999999999999999999999999999999988888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (733)
..+|+|+.+.++.++|+||+++|+||.|||.++|++++.+|++++.++||.++|-
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~------------------------- 228 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRM------------------------- 228 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999999865542
Q ss_pred HhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 236 ~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
+|-+.+. ...++.-.-+.--.+......++|++|+..+|++||+|..
T Consensus 229 -----------LK~Afna-d~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 229 -----------LKAAFNA-DCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred -----------HHHHhcC-CCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 1222211 1111111112222223345689999999999999999874
|
|
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=292.75 Aligned_cols=253 Identities=22% Similarity=0.274 Sum_probs=224.3
Q ss_pred CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|.|+.+.+++ .+++.+|.+| ||+ .|+++.+++.++..+++.+.+|+++..++++|.|++||+|.|+..+......+.
T Consensus 4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence 6678888888 8999999999 995 799999999999999999999999999999999999999999998876443321
Q ss_pred c---cccchhHH--HHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccc
Q 004726 79 V---SLMPDVSV--ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (733)
Q Consensus 79 ~---~~~~~~~~--~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~ 153 (733)
. ........ ..+.+.+.++|||+||.|||+|+|.|..+...||+++|+|+++|..|+.++|..|.+|+++.+|++
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI 162 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence 1 11111111 124467899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHH
Q 004726 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (733)
Q Consensus 154 ~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (733)
+|...|.||++.|++++|+||.+.|||+++++.+++.+.++.-++++++.+|..++
T Consensus 163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~------------------------ 218 (266)
T KOG0016|consen 163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL------------------------ 218 (266)
T ss_pred hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998876554
Q ss_pred HHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 004726 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290 (733)
Q Consensus 234 ~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr 290 (733)
.+|++++......+..+.+.|.......|.|+|+.+.+.+|+.+.
T Consensus 219 ------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 219 ------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred ------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 346777777778889999999999999999999999999999754
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=291.52 Aligned_cols=180 Identities=40% Similarity=0.620 Sum_probs=161.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||.+||..++++|++|++||++++.++++.+++++.++..+++|.+++++....++++.++++++.+.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998777999
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHH
Q 004726 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~ 469 (733)
+||||+||++++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.+|+|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEEcCC
Q 004726 470 LDLMTVGKIIKKVPVVVGNC 489 (733)
Q Consensus 470 ~~~~~l~~~lG~~~v~v~d~ 489 (733)
+++.+|++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999874
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=331.08 Aligned_cols=204 Identities=22% Similarity=0.311 Sum_probs=176.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CcccCCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNG-GRFSGGFDI 67 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~d~~v~~vvl~g~g-~~F~aG~Dl 67 (733)
|+++++.++. +++|++|||||| +.|++|.+|+.+|.+++++++ .|+++|+|||||.+ ++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 6788999999 789999999954 569999999999999999998 78999999999974 899999999
Q ss_pred hhhhhccCCCcccccchh---HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCcccc-CCCC
Q 004726 68 NVFQKVHGAGDVSLMPDV---SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI 141 (733)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~-~Gl~ 141 (733)
+++....... ....... ....+.+.+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9875421111 0011111 1122224578899999999999999999999999999999987 899999997 9999
Q ss_pred CChhhhhhhc--cccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCch
Q 004726 142 PGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (733)
Q Consensus 142 P~~g~~~~l~--r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~ 206 (733)
|++|++++|+ +++|..+|++|++||++++|+||+++||||+|||++++++++.++|+++++.++.
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998 7799999999999999999999999999999999999999999999999998763
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=330.23 Aligned_cols=201 Identities=22% Similarity=0.329 Sum_probs=174.1
Q ss_pred CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCcccCCCCchh
Q 004726 3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV 69 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~d~~v~~vvl~g~-g~~F~aG~Dl~~ 69 (733)
|++|.+++ +++|++|||||| +.|++|.+|+.+|.++++.++ .|+++|+|||||. |++||+|+|+++
T Consensus 10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~ 88 (546)
T TIGR03222 10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM 88 (546)
T ss_pred CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence 46788998 789999999996 469999999999999999999 7899999999987 589999999998
Q ss_pred hhhccCCCcccccchhH----HHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCcccc-CCCCC
Q 004726 70 FQKVHGAGDVSLMPDVS----VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIP 142 (733)
Q Consensus 70 ~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~-~Gl~P 142 (733)
+....... ........ ..+. +.+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|
T Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~i~-~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P 166 (546)
T TIGR03222 89 LGLSTHAW-KVNFCKFTNETRNGIE-DSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLP 166 (546)
T ss_pred Hhccccch-hhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCC
Confidence 75321111 01111111 1222 4577899999999999999999999999999999986 799999997 99999
Q ss_pred Chhhhhhhc--cccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCch
Q 004726 143 GFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (733)
Q Consensus 143 ~~g~~~~l~--r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~ 206 (733)
++|++++++ +++|..+|++|+++|++++|+||++|||||+|||++++++++.++|+++++.+|.
T Consensus 167 ~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 167 GTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred ccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 999999997 6999999999999999999999999999999999999999999999999998763
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=325.76 Aligned_cols=243 Identities=25% Similarity=0.330 Sum_probs=207.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++||+|||+|+||++||..|+++|++|++||+++++++...+.++....... .+... .....+++.+++++ ++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~~ 79 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAVA 79 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHhc
Confidence 5689999999999999999999999999999999998765433222211111 11111 11123457777777 5789
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+|+||+.++|+++++++.+.+++++||+|+||+++++++++.+..+.++++.|||+|++.++++|+++++.|++
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhch
Q 004726 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGY 540 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p---~Gpf~~~D~~Gl 540 (733)
++++++.++++.+|+.++++ ++.|||++||++.++++||+.++++| +++++||+++ .++|++ +|||+++|+.|+
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~ 239 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAGG 239 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcCc
Confidence 99999999999999999999 59999999999999999999999997 5999999999 788875 799999999985
Q ss_pred H-HHHHHHHHHHHhC
Q 004726 541 G-VAAATSKEFDKAF 554 (733)
Q Consensus 541 d-~~~~~~~~l~~~~ 554 (733)
+ .+.+.++++.+.+
T Consensus 240 ~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 240 EAGMRHFLAQFGPCL 254 (495)
T ss_pred HHHHHHHHHHhchhh
Confidence 4 5566666665544
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=292.60 Aligned_cols=191 Identities=44% Similarity=0.702 Sum_probs=173.3
Q ss_pred EEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc-ccccch
Q 004726 7 TMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMPD 84 (733)
Q Consensus 7 ~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~~ 84 (733)
.++. +++|++|+||+|+ .|++|.+|+++|.++++.++.|+++++|||+|.|+.||+|.|++++........ ...+..
T Consensus 2 ~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~ 80 (195)
T cd06558 2 LVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIR 80 (195)
T ss_pred EEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHH
Confidence 5666 6799999999996 899999999999999999999999999999999999999999999876433221 223444
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
..++++ ..+.++||||||++||+|.|+|++++++||+||++++++|++||+++|++|++|++++|++++|...++++++
T Consensus 81 ~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l 159 (195)
T cd06558 81 ELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLL 159 (195)
T ss_pred HHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence 455666 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHH
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD 199 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 199 (733)
+|++++++||+++||||++++.+++.+++.+++++
T Consensus 160 ~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 160 TGRRISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred cCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 99999999999999999999999999999988875
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=275.22 Aligned_cols=231 Identities=26% Similarity=0.394 Sum_probs=213.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCH-HHHHHHhhccccccCc-ccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ-DKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~-~~~~~~~~~i~~~~~~-~~l 385 (733)
..||+|+|.|.+|+++|..+++.||+|.+||+.+++++.+++.+++.+..+-++|.+.. -++++.+..|..++++ +.+
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 57999999999999999999999999999999999999999999999888877654331 1345667788889998 778
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~ 465 (733)
++|=.|-|||||++.+|+.++++++..+.+.+|++|+||++.++...+.+.+.++++..||.|||+..|+||++|.+-|+
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTs 162 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTS 162 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCc---cHHHHHHhh
Q 004726 466 AQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQLLDLA 538 (733)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~---Gpf~~~D~~ 538 (733)
|+++++..++++.+|..||.. .+.-||..||+.++++||-.+++..|+ +..|+|.+| .|+|.+. ||+|++.+-
T Consensus 163 p~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN 241 (313)
T KOG2305|consen 163 PDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN 241 (313)
T ss_pred hhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence 999999999999999999988 689999999999999999999999997 999999999 8999763 999998874
|
|
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=264.23 Aligned_cols=245 Identities=23% Similarity=0.347 Sum_probs=204.8
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 12 ~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
+++|-.|+||+|+ +|.++..|+.+|...+....+..++|+|||+..|+.||+|.||+++..........+......+.+
T Consensus 39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm 118 (287)
T KOG1682|consen 39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM 118 (287)
T ss_pred ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence 6899999999995 899999999999999999888889999999999999999999999976443332233344455666
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCC
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~ 170 (733)
.-|+++|+|||+-|||.+..+||.|...||++||+++++|..|...+|++-...| .-|.|.+++..+.+|++||.+|+
T Consensus 119 -n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML~Tg~Pi~ 196 (287)
T KOG1682|consen 119 -NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYMLMTGLPIT 196 (287)
T ss_pred -HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHHHhCCCCc
Confidence 5699999999999999999999999999999999999999999999999754444 34789999999999999999999
Q ss_pred HHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 004726 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV 250 (733)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 250 (733)
++||+..|||.+|||++++..++.+++.+|-..+...+. ..+ +-
T Consensus 197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------lgk------------------------~f 240 (287)
T KOG1682|consen 197 GEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------LGK------------------------EF 240 (287)
T ss_pred hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------HHH------------------------HH
Confidence 999999999999999999999999999998776643211 111 12
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 251 i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
......++-.++...-.+.+...++-.|.+|+|.+|++||.|.+
T Consensus 241 ~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~ 284 (287)
T KOG1682|consen 241 YYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW 284 (287)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence 22223344556666677778888899999999999999999876
|
|
| >KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=261.01 Aligned_cols=290 Identities=23% Similarity=0.306 Sum_probs=216.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCcccCCCCchhhhhccCCCcccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
+.|.++. .+...+||||||+ .||+|.+|...+.-.+..++.++.+++||+.|. |++||+|+|++.........+...
T Consensus 38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 4677887 7889999999997 699999999999999999999999999999887 589999999986654332222211
Q ss_pred cchhHH---HHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 82 MPDVSV---ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 82 ~~~~~~---~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
....+. .+. ..|.++.||.||.++|..+|||+.|+.+.-||||++++.|++||..+|++|+.|++++|+|+.| ..
T Consensus 117 ~~~fF~~eYsl~-~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l 194 (401)
T KOG1684|consen 117 VKKFFTEEYSLN-HLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL 194 (401)
T ss_pred HHHHHHHHHHHH-HHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence 111111 223 4689999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhh----hcc----------------C--C
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL----HRT----------------D--K 216 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~----~~~----------------~--~ 216 (733)
..++.+||+++++.||+..||.++-||.+.+..--.++...+...|-..+... ... . .
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS 274 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence 99999999999999999999999999987664433344422222111111110 000 0 0
Q ss_pred CCCcHHHHHHHHHH----------HHHHHHhCCCch-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004726 217 LGSLSEAREVLKLA----------RLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHV 285 (733)
Q Consensus 217 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~-a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~a 285 (733)
.....++.+.+... ..+.+.....-| ..+-..+.++++....+++.+..|-+.-.....+.|+.|+++|
T Consensus 275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA 354 (401)
T KOG1684|consen 275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA 354 (401)
T ss_pred cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 01111122211111 111222222223 5556678899999999999999999999999999999999999
Q ss_pred HHh--hhhhcCCC
Q 004726 286 FFA--QRATSKVP 296 (733)
Q Consensus 286 F~~--kr~~~~~~ 296 (733)
-+- .+.|+|.|
T Consensus 355 ~LIDKd~~PKW~p 367 (401)
T KOG1684|consen 355 VLIDKDQNPKWDP 367 (401)
T ss_pred eeecCCcCCCCCC
Confidence 875 35666655
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=252.89 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=148.0
Q ss_pred hCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 412 ACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 412 ~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
.+.+++++++..++.+.+..+....+|++++|+|||+|++.++++|++++..|++++++.+.++++.+||.|++++|.||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 34567777777776666676666678899999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCC-CCCCcHHHHHHH
Q 004726 492 FAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLL 568 (733)
Q Consensus 492 fi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v 568 (733)
||+||++.+++|||++++++|+ +|+|||.++ .++|||+|||+++|.+|+|+++++++.+++.+++ ++.|++++++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999997 999999999 8999999999999999999999999999999986 555899999999
Q ss_pred HcCC
Q 004726 569 KSGR 572 (733)
Q Consensus 569 ~~g~ 572 (733)
++|.
T Consensus 497 ~~G~ 500 (507)
T PRK08268 497 ALGL 500 (507)
T ss_pred HcCC
Confidence 9875
|
|
| >PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-24 Score=188.07 Aligned_cols=94 Identities=40% Similarity=0.689 Sum_probs=87.4
Q ss_pred CcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHH
Q 004726 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL 567 (733)
Q Consensus 491 Gfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 567 (733)
|||+||++.++++||++++++|+ +|+|||+++ .++|+|+|||+++|.+|+|++.++++.+.+.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999995 999999999 7899999999999999999999999999999998854 79999999
Q ss_pred HHcCCCCcccCcccccc
Q 004726 568 LKSGRNGKANGKGLYTY 584 (733)
Q Consensus 568 v~~g~~G~k~g~Gfy~y 584 (733)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A .... |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=207.99 Aligned_cols=119 Identities=16% Similarity=0.175 Sum_probs=113.3
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccH
Q 004726 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP 531 (733)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gp 531 (733)
..+||+++..|++++++.+.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+| .++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 468899999999999999999999999999999999999999999999999999999998 899999999 899999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHhCCC-CCCCcHHHHHHHHcCC
Q 004726 532 FQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLKSGR 572 (733)
Q Consensus 532 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~ 572 (733)
|+|+|.+|+|+++++++++++.+++ ++.|+++|++|+..|.
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~ 499 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS 499 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence 9999999999999999999999986 4558999999999875
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-22 Score=173.89 Aligned_cols=94 Identities=33% Similarity=0.490 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCC-CCCCHH
Q 004726 621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF-FKPSRF 699 (733)
Q Consensus 621 ~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~-~~p~~~ 699 (733)
+||+||++.+++|||+++++||++ +|++||.+++.|+|||+ |||+++|.+|+|++.++++.+.+.+++. +.|+++
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPL 76 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHH
Confidence 578999999999999999999998 89999999999999998 9999999999999999999999999985 889999
Q ss_pred HHHHHHCCCCc--cccceeec
Q 004726 700 LEERATKGIPL--VRIIFHRF 718 (733)
Q Consensus 700 l~~~~~~g~~g--~g~gfy~y 718 (733)
+++|+++|++| +|+|||+|
T Consensus 77 l~~mv~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 77 LKEMVEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHHHHHTT--BGGGTBSSSBE
T ss_pred HHHHHHCCCCcCcCCCcceeC
Confidence 99999999999 89999998
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A .... |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-21 Score=181.60 Aligned_cols=97 Identities=29% Similarity=0.431 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC--CCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKP 696 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~--~~~p 696 (733)
+++||+||+|.|+++||.|+++.|.+ +-+|||.+|++|.|||| |||+++|.+|+|++..+|..|+..+++ .|.|
T Consensus 198 tpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~p 273 (298)
T KOG2304|consen 198 TPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAP 273 (298)
T ss_pred CCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCC
Confidence 68999999999999999999999999 99999999999999999 999999999999999999999999854 7999
Q ss_pred CHHHHHHHHCCCCc--cccceeecC
Q 004726 697 SRFLEERATKGIPL--VRIIFHRFS 719 (733)
Q Consensus 697 ~~~l~~~~~~g~~g--~g~gfy~y~ 719 (733)
+|+|.++++.|++| .|.|||+|.
T Consensus 274 sPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 274 SPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred ChHHHHHHhccccccccCccceecC
Confidence 99999999999999 799999994
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=184.24 Aligned_cols=99 Identities=27% Similarity=0.342 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCH
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 698 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~ 698 (733)
.++|+.||++.+++|||++|+++|++ +++|||.+|++|+|||+ |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus 183 ~~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 258 (288)
T PRK09260 183 FPGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAP 258 (288)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCH
Confidence 47999999999999999999999997 99999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCc--cccceeecCCC
Q 004726 699 FLEERATKGIPL--VRIIFHRFSNI 721 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y~~~ 721 (733)
+|.+|+++|++| +|+|||+|++.
T Consensus 259 ~l~~~~~~g~~G~k~g~Gfy~y~~~ 283 (288)
T PRK09260 259 LLEKYVKAGRLGRKTGRGVYDYTNR 283 (288)
T ss_pred HHHHHHHCCCCccccCCEEEECCCC
Confidence 999999999999 89999999864
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-18 Score=181.28 Aligned_cols=96 Identities=24% Similarity=0.366 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~ 697 (733)
+++|+.||++.+++|||++|++||++ +++|||.+++.|+|||+ |||+++|.+|+|.++++++.+++.+++ +|.|+
T Consensus 188 ~pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~ 263 (286)
T PRK07819 188 RSGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPP 263 (286)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCC
Confidence 57999999999999999999999997 89999999999999998 999999999999999999999998886 89999
Q ss_pred HHHHHHHHCCCCc--cccceeec
Q 004726 698 RFLEERATKGIPL--VRIIFHRF 718 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y 718 (733)
+++++|+++|++| +|+|||+|
T Consensus 264 ~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 264 PLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999999 89999999
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-18 Score=167.08 Aligned_cols=144 Identities=19% Similarity=0.142 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeCCccc
Q 004726 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (733)
Q Consensus 31 ~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~ 110 (733)
-.+.+|.++++.+++|+++|+|||++ +|.|.|+.... ...+.+ ..+.+++|||||++||.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCchh
Confidence 35789999999999999999999986 68898876431 122345 5678899999999999999
Q ss_pred chhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh--------hhccccC--HHHHHHHHHcCCCCCHHHHHHcCCc
Q 004726 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ--------RLPRLVG--LSKAIEMMLLSKSITSEEGWKLGLI 180 (733)
Q Consensus 111 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~--------~l~r~~G--~~~a~~l~ltG~~i~a~eA~~~Glv 180 (733)
|+|+.|+++||+++++++++|+++.+..+..+...... .+++..| +...++++..|..++|++|++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 99999999999999999999999988776433222222 3444545 7888999999999999999999999
Q ss_pred cEEcCcchHHHH
Q 004726 181 DAVVTSEELLKV 192 (733)
Q Consensus 181 ~~vv~~~~l~~~ 192 (733)
|++.+.+++.+.
T Consensus 164 D~v~~~~e~~~~ 175 (177)
T cd07014 164 DSLGSFDDAVAK 175 (177)
T ss_pred ccCCCHHHHHHH
Confidence 999998877653
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-18 Score=180.74 Aligned_cols=97 Identities=26% Similarity=0.415 Sum_probs=92.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCC
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKP 696 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p 696 (733)
-++++|.||++.+++|||++|+++|++ +|+|||.++++|+|||+ |||+++|.+|+|.+.++++.+.+.+++ +|+|
T Consensus 183 d~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~ 258 (282)
T PRK05808 183 NAPGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRP 258 (282)
T ss_pred CccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCC
Confidence 468999999999999999999999997 79999999999999998 999999999999999999999999886 8999
Q ss_pred CHHHHHHHHCCCCc--cccceeec
Q 004726 697 SRFLEERATKGIPL--VRIIFHRF 718 (733)
Q Consensus 697 ~~~l~~~~~~g~~g--~g~gfy~y 718 (733)
++++++|+++|++| +|+|||+|
T Consensus 259 ~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 259 CPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred CHHHHHHHHCCCCccccCCcccCC
Confidence 99999999999999 89999999
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-18 Score=177.57 Aligned_cols=99 Identities=24% Similarity=0.391 Sum_probs=93.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhC--CCCC
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG--NFFK 695 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~--~~~~ 695 (733)
=+++||+||++.++++||++++.+|++ +|++||.+|+.|+|||+ |||+++|.+|+|..+++++.+.+.++ +.|.
T Consensus 183 D~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~ 258 (307)
T COG1250 183 DVPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYR 258 (307)
T ss_pred CCCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCcccc
Confidence 368999999999999999999999999 89999999999999998 99999999999999999999998877 4688
Q ss_pred CCHHHHHHHHCCCCc--cccceeecCC
Q 004726 696 PSRFLEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 696 p~~~l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
|++++++|+++|++| +|+|||+|++
T Consensus 259 ~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 259 PPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred ccHHHHHHHhcccccccCCCcceeccc
Confidence 899999999999999 8999999996
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.1e-18 Score=172.23 Aligned_cols=187 Identities=21% Similarity=0.209 Sum_probs=139.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
.||+|||+|.||.+||.+|.++||+|++||+++++..... .+.| .....+..+++++|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~G------------a~~a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAG------------ATVAASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcC------------CcccCCHHHHHHhC
Confidence 3799999999999999999999999999999999843221 1222 12222233788999
Q ss_pred CEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHHH---HhcccCCCCcEEEEecCCCCCCCCe-------e
Q 004726 389 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGAHFFSPAHVMPL-------L 456 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~~~ig~h~~~p~~~~~l-------v 456 (733)
|+||.|||++.++...++. .+.+.+++++++++ .||++++. +++.+. -.|.+|.+.|..+.. +
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence 9999999999999888884 58888899999875 44555543 333332 236777776654422 3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC-----cchhhhhHH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF 525 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG-----fi~nRl~~~----~~~Ea~~l~~~-Gv~~~dID~a~-~~~ 525 (733)
.|+.|. +++.+++++++++.+|+.++++++. | -++|+++.. -+.||+.+.+. |++++.+..++ .+.
T Consensus 134 timvGG--~~~~f~r~~pvl~~~g~~i~~~G~~-G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~ 210 (286)
T COG2084 134 TIMVGG--DAEAFERAKPVLEAMGKNIVHVGPV-GAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA 210 (286)
T ss_pred EEEeCC--CHHHHHHHHHHHHHhcCceEEECCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence 344443 8999999999999999999999875 4 355777543 34699999977 89999999999 443
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=177.32 Aligned_cols=98 Identities=23% Similarity=0.342 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~ 697 (733)
+++++.||++.+++|||++++++|++ +++|||.++++|+|||+ |||+++|.+|++.++++++.+++.+++ +|.|+
T Consensus 185 ~~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 260 (295)
T PLN02545 185 YPGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPC 260 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCC
Confidence 47899999999999999999999997 89999999999999998 999999999999999999999998886 79999
Q ss_pred HHHHHHHHCCCCc--cccceeecCC
Q 004726 698 RFLEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
+++++|+++|++| +|+|||+|++
T Consensus 261 ~~l~~~~~~g~~G~k~g~Gfy~y~~ 285 (295)
T PLN02545 261 PLLVQYVDAGRLGRKSGRGVYHYDG 285 (295)
T ss_pred HHHHHHHHCCCCcccCCCeeeECCC
Confidence 9999999999999 8999999975
|
|
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=160.62 Aligned_cols=149 Identities=25% Similarity=0.270 Sum_probs=118.3
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
++|.++. .++..+...+.+.++.+++++ ++.|+|. ..+ |+++.. ...++ ..|
T Consensus 2 ~vv~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~----------------~~~i~-~~l 54 (187)
T cd07020 2 YVLEING----AITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS----------------TREIV-QAI 54 (187)
T ss_pred EEEEEee----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH----------------HHHHH-HHH
Confidence 5666654 367778899999999998665 7878775 332 233321 12445 567
Q ss_pred hcCCCcEEEEeC---CcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCCh--------------hhhhhhccccCH-
Q 004726 95 EDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGF--------------GGTQRLPRLVGL- 156 (733)
Q Consensus 95 ~~~~kp~Iaav~---G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~--------------g~~~~l~r~~G~- 156 (733)
..+||||||+|+ |+|.|||+.++++||+++++++++|+.+++..+..+.. +....+++..|.
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 134 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN 134 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 889999999999 99999999999999999999999999999985544432 245578888887
Q ss_pred -HHHHHHHHcCCCCCHHHHHHcCCccEEcCcc-hHHH
Q 004726 157 -SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLK 191 (733)
Q Consensus 157 -~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~-~l~~ 191 (733)
.++++++++|+.++|+||+++||||+|+++. ++..
T Consensus 135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 171 (187)
T cd07020 135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK 171 (187)
T ss_pred HHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence 6899999999999999999999999999876 5554
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-17 Score=175.25 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCC--CC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KP 696 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~--~p 696 (733)
.++|+.||++.+++|||++++++|++ +|+|||.+|..|+|||+ |||+++|.+|+|.++++++.+.+.+++.+ .|
T Consensus 187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~ 262 (287)
T PRK08293 187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKA 262 (287)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccc
Confidence 57899999999999999999999999 89999999999999998 99999999999999999999999888743 48
Q ss_pred CHHHHHHHHCCCCc--cccceeecC
Q 004726 697 SRFLEERATKGIPL--VRIIFHRFS 719 (733)
Q Consensus 697 ~~~l~~~~~~g~~g--~g~gfy~y~ 719 (733)
++++++|+++|++| +|+|||+|+
T Consensus 263 ~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 263 AALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred hHHHHHHHHCCCCcccCCCccccCc
Confidence 89999999999999 899999995
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-17 Score=173.92 Aligned_cols=96 Identities=21% Similarity=0.263 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~ 697 (733)
.++++.||++.+++|||+++++||++ +++|||.+|+.++|||+ |||+++|.+|+|.+.++++.+++.+++ +|.|+
T Consensus 187 ~pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 262 (291)
T PRK06035 187 VPGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPP 262 (291)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCcc
Confidence 57899999999999999999999999 89999999999999998 999999999999999999999998886 78999
Q ss_pred HHHHHHHHCCCCc--c-----ccceeec
Q 004726 698 RFLEERATKGIPL--V-----RIIFHRF 718 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~-----g~gfy~y 718 (733)
++|++|+++|++| + |+|||+|
T Consensus 263 ~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 263 NSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 9999999999999 8 8999999
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-17 Score=172.24 Aligned_cols=99 Identities=23% Similarity=0.302 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~ 697 (733)
.+++|.||++.+++||+++++++|++ ++++||.++++|+|||+ |||+++|.+|+|.++++++.+.+.+++ +|.|+
T Consensus 185 ~pg~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~ 260 (292)
T PRK07530 185 FPAFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPC 260 (292)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence 46899999999999999999999997 99999999999999997 999999999999999999999988876 79999
Q ss_pred HHHHHHHHCCCCc--cccceeecCCC
Q 004726 698 RFLEERATKGIPL--VRIIFHRFSNI 721 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y~~~ 721 (733)
++|++|+++|++| +|+|||+|++.
T Consensus 261 ~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 261 PLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999999999 89999999643
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-16 Score=166.14 Aligned_cols=187 Identities=19% Similarity=0.238 Sum_probs=135.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||.+||..|++.|++|++||+++++++... +.|. ...++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGA------------VTAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC------------cccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876642 2221 11122226788999
Q ss_pred EEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCCC-------CCeeE
Q 004726 390 MVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV-------MPLLE 457 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~~-------~~lve 457 (733)
+||+|+|++..++..++. .+...++++++|++ +|+.++. ++.+.+... |+||.++|.. ...++
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999988777766653 35667788888874 5555454 344444322 4455443322 12244
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCC---cchhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 526 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~pG---fi~nRl~~~~----~~Ea~~l~~~-Gv~~~dID~a~-~~~G 526 (733)
++.+. ++++++.+.++++.+|+.++++++ .+| +++|+++.+. ++|++.+.+. |++++++..++ .+.+
T Consensus 133 i~~gg--~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVGG--DQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEecC--CHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 55553 689999999999999999999975 445 4778887654 7899998866 89999999999 4444
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=169.36 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCH
Q 004726 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSR 698 (733)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~~ 698 (733)
++++.||++.++++|++.|+++|++ ++++||.++..|+|||++..|||+++|.+|+|.++++++.+.+.+++ +|.|++
T Consensus 182 ~Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~ 260 (314)
T PRK08269 182 PGYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPA 260 (314)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 5789999999999999999999997 89999999999999998889999999999999999999999988887 899999
Q ss_pred HHHHHHHCCCCc--cccceeecCC
Q 004726 699 FLEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
+|++|+++|++| +|+|||+|++
T Consensus 261 ~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 261 IVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHCCCCcccCCCcceeCCC
Confidence 999999999999 8999999964
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.7e-16 Score=163.09 Aligned_cols=187 Identities=17% Similarity=0.214 Sum_probs=136.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.++|..|++.|++|++||+++++.++.. +.| +..++++ +.+++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~ 58 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAEQ 58 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHhc
Confidence 5899999999999999999999999999999998866532 112 2223344 56789
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCCCC-------Ce
Q 004726 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------PL 455 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~~~-------~l 455 (733)
||+||+|+|+...++..++. .+.+.++++++|+ ++|+..+. ++.+.+... |.||.++|..+ ..
T Consensus 59 ~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g~ 133 (296)
T PRK11559 59 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDGT 133 (296)
T ss_pred CCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhCc
Confidence 99999999988877666553 4677788899887 45555544 344433222 55666655332 33
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCcc---hhhhhHH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF 525 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~pGfi---~nRl~~~----~~~Ea~~l~~~-Gv~~~dID~a~-~~~ 525 (733)
++++.+. +++.++.+.++++.+|+.++++++ .+|++ +|+++.+ .++|++.+++. |+++++++.++ .++
T Consensus 134 l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~ 211 (296)
T PRK11559 134 LSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL 211 (296)
T ss_pred EEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence 4555553 689999999999999999999975 45664 6776543 47899999876 89999999998 444
Q ss_pred C
Q 004726 526 G 526 (733)
Q Consensus 526 G 526 (733)
+
T Consensus 212 ~ 212 (296)
T PRK11559 212 A 212 (296)
T ss_pred c
Confidence 3
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.6e-16 Score=182.11 Aligned_cols=99 Identities=23% Similarity=0.239 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCH
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 698 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~ 698 (733)
+++||+||++.+++|||++++++|+ +++|||.+|. ++|||+ |||+++|.+|+|.++++++.+++.++++|.|++
T Consensus 486 ~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~ 559 (699)
T TIGR02440 486 KAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPA 559 (699)
T ss_pred ccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcH
Confidence 5899999999999999999999995 6999999986 899999 999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCc--cccceeecCCCcc
Q 004726 699 FLEERATKGIPL--VRIIFHRFSNIFS 723 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y~~~~~ 723 (733)
++++|+++|++| +|+|||+|+..+.
T Consensus 560 ~l~~~v~~G~lG~ksg~GfY~y~~~~~ 586 (699)
T TIGR02440 560 VFDKLLSDDRKGRKNGKGFYLYGAATK 586 (699)
T ss_pred HHHHHHHCCCCcccCCcEEEeCCCCCC
Confidence 999999999999 8999999986543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-15 Score=156.18 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=119.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||+++|..|.++|++|++||++++.++++.+ .|.++ ..+++.+.+++||
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~~~aD 59 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVD-----------EASTDLSLLKDCD 59 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------cccCCHhHhcCCC
Confidence 7999999999999999999999999999999988776532 23211 1233445678999
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCC------------CCCeeE
Q 004726 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE 457 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~------------~~~lve 457 (733)
+||+|+| .....++++++.+.++++++|+ ++++.....+........+|+++||+.++. .++...
T Consensus 60 lVilavp--~~~~~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~ 136 (279)
T PRK07417 60 LVILALP--IGLLLPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV 136 (279)
T ss_pred EEEEcCC--HHHHHHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence 9999999 5555678899998888888775 455566555555444455799999976543 334555
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
+++++.++++.++.+.++++.+|..++.+++
T Consensus 137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 137 LTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 8888899999999999999999999998853
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=179.46 Aligned_cols=96 Identities=23% Similarity=0.255 Sum_probs=91.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCH
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 698 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~ 698 (733)
+++||+||++.+++|||++++++|+ +++|||.+++ ++|||+ |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus 491 ~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~ 564 (708)
T PRK11154 491 GAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPA 564 (708)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCH
Confidence 5799999999999999999999997 5999999988 899999 999999999999999999999998999999999
Q ss_pred HHHHHHHCCCCc--cccceeecCC
Q 004726 699 FLEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
++++|+++|++| +|+|||+|+.
T Consensus 565 ~l~~~v~~g~~G~k~g~GfY~y~~ 588 (708)
T PRK11154 565 AFDKLLNDDRKGRKNGRGFYLYGQ 588 (708)
T ss_pred HHHHHHHCCCCcccCCceEEECCC
Confidence 999999999999 8999999984
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-15 Score=160.43 Aligned_cols=100 Identities=21% Similarity=0.176 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHH
Q 004726 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRF 699 (733)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~ 699 (733)
++++.||++.++++||+.++++|++ +++++|.++..|+|||++..|||+++|.+|+|.+.+++..+.+.++++|.|+++
T Consensus 183 ~G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 261 (311)
T PRK06130 183 PGFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPL 261 (311)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHH
Confidence 6789999999999999999999998 899999999999999998899999999999999999999999989999999999
Q ss_pred HHHHHHCCCCc--cccceeecCC
Q 004726 700 LEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 700 l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
+++|+++|++| +|+|||+|++
T Consensus 262 l~~~~~~g~~G~~~g~gfy~y~~ 284 (311)
T PRK06130 262 LEEKVEAGELGAKSGQGFYAWPP 284 (311)
T ss_pred HHHHHHcCCccccCCCcCccCCC
Confidence 99999999999 7999999974
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-15 Score=175.53 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=91.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCC--
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFK-- 695 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~-- 695 (733)
-+++||+||++.+++|||+++++||+ ++++||.++ .++|||+ |||+++|.+|+|+.+++++.+...++++|.
T Consensus 515 d~pGFi~NRi~~~~~~ea~~lv~eGv--~~~~ID~a~-~~~G~p~---GP~~l~D~vGld~~~~v~~~l~~~~~~~~~~~ 588 (737)
T TIGR02441 515 DGPGFYTTRCLGPMLAEVIRLLQEGV--DPKKLDKLT-TKFGFPV---GAATLADEVGVDVAEHVAEDLGKAFGERFGGG 588 (737)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCcccccc
Confidence 36899999999999999999999997 699999996 6999999 999999999999999999999988888774
Q ss_pred CCHHHHHHHHCCCCc--cccceeecCCCc
Q 004726 696 PSRFLEERATKGIPL--VRIIFHRFSNIF 722 (733)
Q Consensus 696 p~~~l~~~~~~g~~g--~g~gfy~y~~~~ 722 (733)
|++++++|+++|++| +|+|||+|++.+
T Consensus 589 ~~~~l~~~v~~G~~G~k~G~GfY~y~~~~ 617 (737)
T TIGR02441 589 SAELLSELVKAGFLGRKSGKGIFIYQEGK 617 (737)
T ss_pred cCHHHHHHHHCCCCcccCCCeeEEcCCCC
Confidence 689999999999999 899999998543
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.4e-15 Score=147.37 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=114.4
Q ss_pred cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 14 ~i~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
+|++|.++-| + .+..+...+.+|.++|+.+..||++++|||+ .||+|+|+..+.. ..+.+
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l 63 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL 63 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence 4777777766 2 3444456789999999999999999999998 7999999977532 12334
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccC------CCCCChhhhhhhccc-----------
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL------GVIPGFGGTQRLPRL----------- 153 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~------Gl~P~~g~~~~l~r~----------- 153 (733)
+.+..++|||||+++|.|.|+|+.|+++||++++++++.|+...+.. ++.+..|..+.+.+.
T Consensus 64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~ 142 (211)
T cd07019 64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 142 (211)
T ss_pred -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCC
Confidence 56788999999999999999999999999999999999997433210 000222222211111
Q ss_pred -----------------------------cCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHH
Q 004726 154 -----------------------------VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (733)
Q Consensus 154 -----------------------------~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~ 191 (733)
+.+. ..+-+..|..+++++|++.||||++...++..+
T Consensus 143 ~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~-~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 143 LPPEAQLGLQLSIENGYKRFITLVADARHSTPE-QIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 1111 122245788999999999999999987666544
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-15 Score=174.18 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=90.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCC--CC
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FK 695 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~--~~ 695 (733)
=+++||+||++.+++||+++++++| + +++|||.+|..++|||+ |||+++|.+|+|+++++++.+...++++ +.
T Consensus 493 d~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 567 (715)
T PRK11730 493 DCPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKD 567 (715)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccc
Confidence 3689999999999999999999999 6 89999999999999998 9999999999999999999999888775 34
Q ss_pred CCHHHHHHHHCCCCc--cccceeecCC
Q 004726 696 PSRFLEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 696 p~~~l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
|++++++|+++|++| +|+|||+|++
T Consensus 568 ~~~~l~~~v~~G~~G~k~g~GfY~y~~ 594 (715)
T PRK11730 568 YRDAIDVLFEAKRFGQKNGKGFYRYEE 594 (715)
T ss_pred hhHHHHHHHHCCCCccccCCEeEeccc
Confidence 578999999999999 8999999973
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=144.77 Aligned_cols=184 Identities=18% Similarity=0.122 Sum_probs=135.6
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC----eeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
||+|||+|.||.+|+..|+++|+ +|+++ |+++++.+... +.| +..+++. +
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~e 57 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNTE 57 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChHH
Confidence 69999999999999999999998 89999 99988765431 112 2223343 5
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-EecCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~~~ 462 (733)
.+++||+||+|++ ++...+++.++.+.++++++|+|.+++++++.+.+..... +++..+|..|......+. ++.+.
T Consensus 58 ~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~~ 134 (266)
T PLN02688 58 VVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLGP 134 (266)
T ss_pred HHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeCC
Confidence 6789999999996 6667888888888888888888888899999888766543 788888888876665555 44577
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcCC--------CCcchhhhhHHHHHHHH-HHHHcCCCHHHHHHHH
Q 004726 463 RTSAQVILDLMTVGKIIKKVPVVVGNC--------TGFAVNRAFFPYSQSAR-LLVSLGVDVFRIDSAI 522 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d~--------pGfi~nRl~~~~~~Ea~-~l~~~Gv~~~dID~a~ 522 (733)
.++++..+.++++++.+|. ++++.+. .| -...+++.++.... .....|+++++.-.++
T Consensus 135 ~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g-~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~ 201 (266)
T PLN02688 135 AATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSG-SGPAYIFLAIEALADGGVAAGLPRDVALSLA 201 (266)
T ss_pred CCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhc-CHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999999999999 7776431 11 11122222222111 1445699999988887
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-15 Score=172.85 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=89.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCC--C
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--K 695 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~--~ 695 (733)
-+++||.||++.++++||++++++| + +|++||.+|..++|||+ |||+++|.+|+|+.+++++.+...+++++ .
T Consensus 493 d~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~ 567 (714)
T TIGR02437 493 DCPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKD 567 (714)
T ss_pred CcccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccc
Confidence 3689999999999999999999999 5 79999999999999999 99999999999999999999988887753 3
Q ss_pred CCHHHHHHHHCCCCc--cccceeecC
Q 004726 696 PSRFLEERATKGIPL--VRIIFHRFS 719 (733)
Q Consensus 696 p~~~l~~~~~~g~~g--~g~gfy~y~ 719 (733)
|++++++|+++|++| +|+|||+|+
T Consensus 568 ~~~~l~~~v~~G~lG~K~g~GfY~y~ 593 (714)
T TIGR02437 568 GRDAIDALFEAKRLGQKNGKGFYAYE 593 (714)
T ss_pred hhHHHHHHHHCCCCcccCCCEEEecc
Confidence 578999999999999 899999996
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-14 Score=140.34 Aligned_cols=187 Identities=19% Similarity=0.196 Sum_probs=132.5
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
..++||+||+|.||++|+.+|.++||+|++|||+.++.+.. .+.|. -...+..|.++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga------------~v~~sPaeVae 90 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGA------------RVANSPAEVAE 90 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhch------------hhhCCHHHHHh
Confidence 35789999999999999999999999999999999887664 23331 11233337889
Q ss_pred CCCEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCCCC-------C
Q 004726 387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------P 454 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~~~-------~ 454 (733)
+||+||.+||+..+++..++.. +...++++.......||+.+. ++++.+... +..|.+.|..+ .
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~G 166 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEEG 166 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhcC
Confidence 9999999999999998888865 333344544332345555543 555554432 33333333222 2
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-C---cchhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-G---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~p-G---fi~nRl~~~~----~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+.+..+ .+++.++++.++++.+||+.+.++... | -+.|+++.+. +.|++.+.+. |+++..+-.++
T Consensus 167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eil 241 (327)
T KOG0409|consen 167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEIL 241 (327)
T ss_pred eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445555 589999999999999999999997532 2 3567765432 4599998866 99999998888
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.8e-14 Score=151.99 Aligned_cols=171 Identities=20% Similarity=0.196 Sum_probs=122.8
Q ss_pred CcceEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 307 ~~~kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
.+++|+||| +|.||+++|..|.++|++|++||+++.. . . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~----------------------~------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R----------------------A------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h----------------------H------------HHHH
Confidence 457899998 9999999999999999999999986320 0 0 0245
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEEecCCCCCCCCeeE--EecC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT 461 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve--iv~~ 461 (733)
++||+||+|+| ......+++++.+ +++++||++++|+ .++..+.+... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP--~~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVP--IHLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCc--HHHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 78999999999 4456788899888 8999999988875 34556655433 3699999998886654433 4556
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCcch---hhhhHH-HHHHHHHHHHcCCCHHHH
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV---NRAFFP-YSQSARLLVSLGVDVFRI 518 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d-~pGfi~---nRl~~~-~~~Ea~~l~~~Gv~~~dI 518 (733)
+.+++++++.+.++++.+|.+++.++. ....++ +-+-+. .+.++..+.+.+.+++++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 667889999999999999999999852 222222 222111 123455555566665554
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=143.82 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=125.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.+||..|+++|++|++||+++++++...+ .| +..+++. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHhc
Confidence 58999999999999999999999999999999988765421 12 1223333 56789
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHHH---HhcccC-CCCcEEEEecCCCC---CCCCeeEE
Q 004726 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 458 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~-~~~~~ig~h~~~p~---~~~~lvei 458 (733)
||+||.|+|++..++..+.. .+.+.++++++++ ++|+..+.. +.+.+. ...+|+.......+ ..+.++ +
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~-~ 135 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLL-L 135 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEE-E
Confidence 99999999977766655542 3566677888775 456655543 333332 22233332211111 122222 3
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC-----cchhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG-----fi~nRl~----~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
+.| .+++++++++++++.+|+.++++++ +| -++|.++ ...+.|++.+.+. |++++.+-.++
T Consensus 136 ~~g--g~~~~~~~~~p~l~~~g~~~~~~g~-~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 136 LAG--GTAEQVERATPILMAMGNELINAGG-PGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred EEC--CCHHHHHHHHHHHHHHcCCeEeeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333 2789999999999999999999986 33 2334432 3445799988866 89999987777
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-14 Score=137.27 Aligned_cols=148 Identities=18% Similarity=0.149 Sum_probs=99.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
|+||+|||+|.||.+||.+|+++|++|++||+++++.++..+ . .....+++ +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------A-------------GAEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------T-------------TEEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------h-------------hhhhhhhhhhHhh
Confidence 579999999999999999999999999999999998877532 1 23445555 6788
Q ss_pred CCCEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCCHHHH---hcccCCCCcEEEEecCCCCC--------CC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLNIV---GEKTSSQDRIIGAHFFSPAH--------VM 453 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~~l---~~~~~~~~~~ig~h~~~p~~--------~~ 453 (733)
+||+||.|+|++.++ ++++.. +.+.++++++++. +||.+++.. ++.+... |.||.+.|- .+
T Consensus 57 ~~dvvi~~v~~~~~v-~~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~~----g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDAV-EAVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAAK----GVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHHH-HHHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHHT----TEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchhh-hhhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhhc----cceeeeeeeeccccccccc
Confidence 999999999966665 455555 7888889998864 555555533 3333211 345544332 23
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEE-EcC
Q 004726 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVV-VGN 488 (733)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~-v~d 488 (733)
.+.-++.| +++++++++++++.+|+++++ +|+
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCceeeeCc
Confidence 44445555 689999999999999998884 364
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-13 Score=144.21 Aligned_cols=176 Identities=18% Similarity=0.143 Sum_probs=123.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|+||++||..|.++|++|.+|+++++..+.... ...+..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 37999999999999999999999999999998876443211 1112111 112333 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEEecCCCCC------------C
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------------V 452 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~--~~~~l~~~~~~~~~~ig~h~~~p~~------------~ 452 (733)
||+||+|+| +.....+++++.+ .++++++|++.+|+. .+..+........+|++.||+.... .
T Consensus 61 aDlVilavP--~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVP--VDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCC--HHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 999999999 5677899999987 478888887655542 2334444444567899999865431 2
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCCcchhhhh--HHHHHHHH
Q 004726 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAF--FPYSQSAR 506 (733)
Q Consensus 453 ~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~-d~pGfi~nRl~--~~~~~Ea~ 506 (733)
+...-+++++.++++.++.++++++.+|+.++.+. +....++..+. -.++.+++
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 33345788888999999999999999999999884 44444554442 23444444
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=136.47 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=135.0
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC---CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G---~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
|++|+|||+|.||.+++..|.++| ++|.++|+++++.++..+.+ | +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence 457999999999999999999999 78999999998866542210 1 1223333 4
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-EecCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~~~ 462 (733)
.+.+||+||+|+| +....++++++.+.+ +++|+|.+++++...+...+....+++.+||..|......+. ++++.
T Consensus 59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 5789999999998 777788888887766 456778888899888887776567899999988876665555 55777
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcCC--CCcc-h--h--hhhHHHHHHHHHH-HHcCCCHHHHHHHH
Q 004726 463 RTSAQVILDLMTVGKIIKKVPVVVGNC--TGFA-V--N--RAFFPYSQSARLL-VSLGVDVFRIDSAI 522 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d~--pGfi-~--n--Rl~~~~~~Ea~~l-~~~Gv~~~dID~a~ 522 (733)
.++++..+.+..+++.+|..+.+..+. .... . + -+++.++...... .+.|+++++...++
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~ 202 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA 202 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 789999999999999999744443221 1111 1 1 1223344333333 34689988877666
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=136.91 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=125.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC----eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +..+++. +.
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e~ 60 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNEV 60 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHHH
Confidence 79999999999999999999885 699999999887654221 11 2223333 56
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-cCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTER 463 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~~~~ 463 (733)
+++||+||.||+ ++...++++++.+.++++++|+|...+++++.+.+.+....+++.+.|+.|...+..+..+ +++.
T Consensus 61 ~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~ 138 (272)
T PRK12491 61 ANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEM 138 (272)
T ss_pred HhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCC
Confidence 789999999999 6888888899988888889999999999999999988766689999999998888777665 5677
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
.+++..+.+..++..+|+.. ++.
T Consensus 139 ~~~~~~~~v~~lf~~~G~~~-~~~ 161 (272)
T PRK12491 139 VTEKDIKEVLNIFNIFGQTE-VVN 161 (272)
T ss_pred CCHHHHHHHHHHHHcCCCEE-EEc
Confidence 88999999999999999974 443
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-13 Score=138.37 Aligned_cols=188 Identities=14% Similarity=0.151 Sum_probs=133.2
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC----CeeEEEeCChH-HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.+||+|||+|.||.+|+..|+++| ++|+++|++++ +++.... ..| +..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence 358999999999999999999998 78999999764 4333211 001 2223333
Q ss_pred -cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-Eec
Q 004726 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVR 460 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~ 460 (733)
+.+++||+||.||| ++...+++.++.+.++++++|+|..++++++.+.+.......+++.||+.|......+. +++
T Consensus 60 ~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 55789999999999 66667778888888888888888888999998888776556799999976665544333 447
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----Ccch--hhhhHHHHHHHHH--HHHcCCCHHHHHHHH
Q 004726 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAV--NRAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (733)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~p-----Gfi~--nRl~~~~~~Ea~~--l~~~Gv~~~dID~a~ 522 (733)
++..+++..+.++++++.+|+..+ +.+.- |... ..+++ ++.|++. ....|+++++...++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~~~-~~~eal~e~~~~~Gl~~~~a~~~~ 206 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSV-VEEEDMHAVTALSGSGPAYIY-YVVEAMEKAAKKIGLKEDVAKSLI 206 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 777889999999999999998554 32210 0000 12222 2334333 446699999888877
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=142.61 Aligned_cols=185 Identities=18% Similarity=0.114 Sum_probs=126.4
Q ss_pred EEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCCCEE
Q 004726 313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV 391 (733)
Q Consensus 313 VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlV 391 (733)
|||+|.||.+||..|+++|++|++||+++++.+... +.| +..+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAG-------------AQAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876542 112 2223344 568899999
Q ss_pred EEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCC--------CCeeEEecC
Q 004726 392 IEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV--------MPLLEIVRT 461 (733)
Q Consensus 392 I~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~--------~~lveiv~~ 461 (733)
|.|||.+..+...++ ..+.+.+++++++++ +||+.+.........-. -.|.+|.+.|.. +.+.-++.|
T Consensus 57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~-~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg 134 (288)
T TIGR01692 57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAA-AHGAVFMDAPVSGGVGGARAGTLTFMVGG 134 (288)
T ss_pred EEeCCChHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH-HcCCcEEECCCCCCHHHHhhCcEEEEECC
Confidence 999996555544333 567777788888764 45666654333211100 014455444332 223333444
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCc---chhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d-~pGf---i~nRl~~----~~~~Ea~~l~~~-Gv~~~dID~a~-~~~G 526 (733)
+++.+++++++++.+|+.++++++ ..|. ++|.++. ..+.|++.+.+. |++++++..++ .+.|
T Consensus 135 ---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 135 ---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred ---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 678999999999999999999987 3333 4455432 246799998876 89999999998 4444
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-12 Score=133.45 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=109.9
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|. +...++.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGL------------VDEIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCC------------CcccCCHHHHhc
Confidence 79999999999999999999996 7999999998876542 2221 111223333456
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccC--CCCcEEEEecCCC-----C-C------CC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP-----A-H------VM 453 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~--~~~~~ig~h~~~p-----~-~------~~ 453 (733)
||+||.|+| +....+++.++.+ ++++++|++.+|+ ... +.+.+. .+.+|++.||+.+ | . .+
T Consensus 59 aD~Vilavp--~~~~~~~~~~l~~-l~~~~iv~d~gs~-k~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g 133 (275)
T PRK08507 59 CDVIFLAIP--VDAIIEILPKLLD-IKENTTIIDLGST-KAK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG 133 (275)
T ss_pred CCEEEEeCc--HHHHHHHHHHHhc-cCCCCEEEECccc-hHH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence 999999999 6666778888888 8889888765443 222 222211 2357999999743 1 1 23
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
..+.+++.+.++++.++.+.++++.+|..++.+.+
T Consensus 134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 45667788788999999999999999999999853
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=135.68 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=117.6
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH--HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC--cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YS 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 383 (733)
.++|+|+|+|.||+++|+.+.+.|+.|.+++++.. .++.+ .+.|.++. .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhh
Confidence 46899999999999999999999998866665544 43332 22232221 0122 25
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEEecCCCCC------CCCe
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------VMPL 455 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~~~ig~h~~~p~~------~~~l 455 (733)
.+.++|+||.||| +....++++++.+.++++++|++.+|+. ++..+.+......+|+|.||+..++ ....
T Consensus 61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 6788999999999 9999999999999999999999877763 3444444443322899999987762 2344
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+-+++++.++.+.++.+.++++.+|.+++.+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 66778888899999999999999999999884
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.4e-13 Score=148.38 Aligned_cols=188 Identities=13% Similarity=0.145 Sum_probs=126.0
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c--
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-- 383 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-- 383 (733)
.+.+|+|||+|.||.+||.+|+++|++|++|||++++.+...+.. ...|.. .+....++ +
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence 345799999999999999999999999999999999887653210 000210 01122333 2
Q ss_pred -ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCC--------
Q 004726 384 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAH-------- 451 (733)
Q Consensus 384 -~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~-------- 451 (733)
.++.+|+||.|||.+..+... +..+.+.+.++.|+++.+ +..+. .+.+.+.. .|+||...|.
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~~V-i~gl~~~l~~G~iiID~s-T~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~ 141 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVDQT-IKALSEYMEPGDCIIDGG-NEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGAR 141 (493)
T ss_pred hcCCCCCEEEEECCCcHHHHHH-HHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhc
Confidence 344599999999977776554 477888888888887544 44333 22222211 2555544332
Q ss_pred CCCeeEEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCCCC------cchhhhhH---HHHHHHHHHHHc--CCC
Q 004726 452 VMPLLEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNCTG------FAVNRAFF---PYSQSARLLVSL--GVD 514 (733)
Q Consensus 452 ~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~pG------fi~nRl~~---~~~~Ea~~l~~~--Gv~ 514 (733)
.++ .+++|. +++++++++++++.++.+ ++++++ +| .+.|-+.+ ..+.|++.+++. |++
T Consensus 142 ~G~--~im~GG--~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~-~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld 216 (493)
T PLN02350 142 NGP--SLMPGG--SFEAYKNIEDILEKVAAQVDDGPCVTYIGP-GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLS 216 (493)
T ss_pred CCC--eEEecC--CHHHHHHHHHHHHHHhhhcCCCCcEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 233 244543 899999999999999954 788886 44 23344433 345699999865 899
Q ss_pred HHHHHHHH
Q 004726 515 VFRIDSAI 522 (733)
Q Consensus 515 ~~dID~a~ 522 (733)
++++-.++
T Consensus 217 ~~~l~~vf 224 (493)
T PLN02350 217 NEELAEVF 224 (493)
T ss_pred HHHHHHHH
Confidence 99999885
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=144.38 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=130.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc--
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-- 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-- 385 (733)
.+|+|||+|.||.+||.+|+++|++|++||+++++.+...+.. ...|. .+..++++ +.+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence 4799999999999999999999999999999999987753310 01121 12233444 233
Q ss_pred -CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCee------EE
Q 004726 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL------EI 458 (733)
Q Consensus 386 -~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lv------ei 458 (733)
+++|+||.+||... ..+.+++++.+.+.++.||++.+++.+...........+ .|+||...|..+... -+
T Consensus 64 l~~~d~Iil~v~~~~-~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG~~gA~~G~~l 140 (470)
T PTZ00142 64 LKKPRKVILLIKAGE-AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGGEEGARYGPSL 140 (470)
T ss_pred CCCCCEEEEEeCChH-HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCCHHHHhcCCEE
Confidence 46899999998554 455667889999999999887666654443322211111 266665544332110 24
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCC-CC----cchhhhhHH---HHHHHHHHHH--cCCCHHHHHHHH
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKV------PVVVGNC-TG----FAVNRAFFP---YSQSARLLVS--LGVDVFRIDSAI 522 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~-pG----fi~nRl~~~---~~~Ea~~l~~--~Gv~~~dID~a~ 522 (733)
+.|. +++++++++++++.++.+ ..++++. .| .+.|-+.++ .+.|++.+++ .|++++++-.++
T Consensus 141 m~GG--~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 141 MPGG--NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred EEeC--CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 4443 799999999999999987 6777762 22 233545433 3569999986 489999998888
Q ss_pred Hhc
Q 004726 523 RSF 525 (733)
Q Consensus 523 ~~~ 525 (733)
..+
T Consensus 219 ~~w 221 (470)
T PTZ00142 219 NKW 221 (470)
T ss_pred HHH
Confidence 544
|
|
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-13 Score=133.34 Aligned_cols=146 Identities=25% Similarity=0.271 Sum_probs=101.8
Q ss_pred CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 25 VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 25 ~Na-l~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
.|+ ++..++.+|.++|+.++.|+++++|||+. +|.|+++.... ...+.+ ..+.. +|||||
T Consensus 18 ~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~-------------~l~~~l-~~~~~-~KpViA 78 (214)
T cd07022 18 LEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF-------------ELADAI-RAARA-GKPIVA 78 (214)
T ss_pred ccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH-------------HHHHHH-HHHhc-CCCEEE
Confidence 354 45789999999999999999999999974 56666654321 111222 22333 599999
Q ss_pred EeCCcccchhhHHhhhcCEEEEeCCceEeCcccc------------CCCCCCh---------h-----hh----hhh---
Q 004726 104 AVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGF---------G-----GT----QRL--- 150 (733)
Q Consensus 104 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~P~~---------g-----~~----~~l--- 150 (733)
+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+.. + .+ ..+
T Consensus 79 ~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~ 158 (214)
T cd07022 79 FVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAE 158 (214)
T ss_pred EECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998765442 3332110 0 00 000
Q ss_pred --------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHH
Q 004726 151 --------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (733)
Q Consensus 151 --------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~ 191 (733)
.|-+.....++++ |..+++++|++.||||++...+++..
T Consensus 159 l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~ 211 (214)
T cd07022 159 VDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA 211 (214)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence 1222333334444 99999999999999999987666543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-13 Score=152.66 Aligned_cols=167 Identities=22% Similarity=0.262 Sum_probs=131.7
Q ss_pred cCcEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC---CCcccCCCCchhhhhccCCCcccccchh
Q 004726 12 NDGVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (733)
Q Consensus 12 ~~~i~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~---g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (733)
++.|++|+++.+ + .|..+....+.+.+.++.+..|++||+|||+-. |..||+ ..
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e~---------------- 366 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----EI---------------- 366 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----HH----------------
Confidence 678999999887 2 354444456788999999999999999999733 333442 11
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceE------eCcc------ccCCCCCChhhhhhhcc-
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPGFGGTQRLPR- 152 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f------~~pe------~~~Gl~P~~g~~~~l~r- 152 (733)
..+.+ ..+...+|||||.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.|....+..+..
T Consensus 367 i~~~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 367 IRREL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 11233 3466788999999999999999999999999999999987 5553 58999998777766654
Q ss_pred ---------------------------ccCHHH-----HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHH
Q 004726 153 ---------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI 200 (733)
Q Consensus 153 ---------------------------~~G~~~-----a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~ 200 (733)
.|+..+ +.+.+.+|+.++++||+++||||++- .+ ++|.+.|.++
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~l 521 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKL 521 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHH
Confidence 566666 77889999999999999999999994 34 6778888888
Q ss_pred Hcc
Q 004726 201 AAR 203 (733)
Q Consensus 201 a~~ 203 (733)
+..
T Consensus 522 a~~ 524 (584)
T TIGR00705 522 AHC 524 (584)
T ss_pred cCC
Confidence 887
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=126.37 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeCC
Q 004726 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (733)
Q Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G 107 (733)
+++.++++|.+.|+.++.|+++++|+|.. .|.|+|+... ..+. ..|..++||||+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence 66688999999999999999999999975 4677765432 2344 5677889999999999
Q ss_pred cccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhh-------------hhh------ccccCHHHHHHHHHcCCC
Q 004726 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-------------QRL------PRLVGLSKAIEMMLLSKS 168 (733)
Q Consensus 108 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~-------------~~l------~r~~G~~~a~~l~ltG~~ 168 (733)
.|.++|+.|+++||.|++.+++.|++..+..+.....+-. ..+ .|.+......+++..|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988876653321000 111 122344456778889999
Q ss_pred CCHHHHHHcCCccEE
Q 004726 169 ITSEEGWKLGLIDAV 183 (733)
Q Consensus 169 i~a~eA~~~Glv~~v 183 (733)
++|+||++.||||++
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=141.15 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=118.4
Q ss_pred eEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 310 kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
||+||| +|.||.++|..|.++|++|+++|++++..+.... +.| +..+++. +.+.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~~ 58 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAKD 58 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhcc
Confidence 799997 7999999999999999999999999877543211 111 2223343 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEEecCCCC----CCCCeeEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA----HVMPLLEIVRT 461 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~~~ig~h~~~p~----~~~~lveiv~~ 461 (733)
||+||.|+| +.....+++++.+.++++++|++.+|+ .+...+.+......+|++.||+..| ..+..+.++++
T Consensus 59 aDvVIlavp--~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~ 136 (437)
T PRK08655 59 ADIVIISVP--INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPT 136 (437)
T ss_pred CCEEEEecC--HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecC
Confidence 999999999 566678889999999999998877764 4445555555545689999986433 34556778888
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+.++++.++.+.++++.+|.+++.+.
T Consensus 137 ~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 137 EKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 88899999999999999999998874
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=135.37 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=122.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||.+||..|.++|++|++||+++. .++. .+.|. ....+..+.+++||
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~------------~~~~s~~~~~~~ad 57 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA------------VSVETARQVTEASD 57 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC------------eecCCHHHHHhcCC
Confidence 699999999999999999999999999999874 2221 12221 11122225678999
Q ss_pred EEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCCHHH---HhcccC-CCCcEEEEecCCCC----CCCCeeEEe
Q 004726 390 MVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFSPA----HVMPLLEIV 459 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~~---l~~~~~-~~~~~ig~h~~~p~----~~~~lveiv 459 (733)
+||.|||++..++..++.. +.+.+.++.+++. +||..+.. +++.+. +...|+. +|.... ..+.+.-++
T Consensus 58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~~ 135 (292)
T PRK15059 58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIMV 135 (292)
T ss_pred EEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEEE
Confidence 9999999887776666542 5555678887764 55555553 333332 3334555 233221 122222233
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----chhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGf-----i~nRl~~----~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.| +++++++++++++.+|+.++++++. |- ++|.++. ..+.|++.+.+. |++++.+-.++
T Consensus 136 gG---~~~~~~~~~p~l~~~g~~~~~~G~~-G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 136 GG---DEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred cC---CHHHHHHHHHHHHHHcCCcEEeCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33 7999999999999999999999873 52 3344432 235699988866 89999987777
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-12 Score=137.74 Aligned_cols=196 Identities=16% Similarity=0.167 Sum_probs=127.1
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH--------HHHHHHHhHhcCCCCHHHHHHHhhcccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG 378 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 378 (733)
.++||+|||+|.||.++|.+|+++|++|++||+++++++..... +...+.+.++ .+++.+
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~------------~g~l~~ 69 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVE------------GGYLRA 69 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhh------------cCceee
Confidence 35789999999999999999999999999999999988763211 1111111111 134444
Q ss_pred ccCccccCCCCEEEEeccCC--------hHHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHhcccCC-------C--
Q 004726 379 VLDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS-------Q-- 438 (733)
Q Consensus 379 ~~~~~~l~~aDlVI~avpe~--------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~-------~-- 438 (733)
+++ +++||+||.|||.+ ......+.+.+.+.++++++|+. .||.++. .+...+.. |
T Consensus 70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~-~STv~pgtt~~~~~~l~~~~~~~~~~~~ 145 (415)
T PRK11064 70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVIL-ESTSPVGATEQMAEWLAEARPDLTFPQQ 145 (415)
T ss_pred ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEE-eCCCCCCHHHHHHHHHHHhccCCccccc
Confidence 443 45899999999964 35566667889999999998764 4444433 22211110 0
Q ss_pred ----CcEEEEecCCCCCCC--Cee-------EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-----CCcchhhhh--
Q 004726 439 ----DRIIGAHFFSPAHVM--PLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGFAVNRAF-- 498 (733)
Q Consensus 439 ----~~~ig~h~~~p~~~~--~lv-------eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-----pGfi~nRl~-- 498 (733)
..|.-. ++|-... ..+ -++.| .+++..+++.++++.+++.++++++. ..++.|-+.
T Consensus 146 ~g~~~~f~v~--~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~ 221 (415)
T PRK11064 146 AGEQADINIA--YCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDV 221 (415)
T ss_pred ccCCCCeEEE--ECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHH
Confidence 011111 2331111 111 24444 37899999999999999887777641 123445432
Q ss_pred -HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 499 -FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 499 -~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+++||+..+.+. |+++.++-.++
T Consensus 222 ~ia~~nE~~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 222 NIAFANELSLICADQGINVWELIRLA 247 (415)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 4778999988877 99999998887
|
|
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=129.36 Aligned_cols=153 Identities=22% Similarity=0.282 Sum_probs=110.6
Q ss_pred EEEEEeCCCCCCCC---CHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHH
Q 004726 15 VAIITLINPPVNAL---AIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (733)
Q Consensus 15 i~~i~l~~p~~Nal---~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (733)
|++|.++-+ + .+.++.+|.++|+.+++|+++++|||++ +|.|+|+.... ...+.+
T Consensus 2 v~vi~i~g~----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i- 59 (208)
T cd07023 2 IAVIDIEGT----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI- 59 (208)
T ss_pred EEEEEEEEE----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-
Confidence 567777654 3 3778999999999999999999999987 58899886531 122344
Q ss_pred HHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccc------------cCCCCCChhhh------------
Q 004726 92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGT------------ 147 (733)
Q Consensus 92 ~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~P~~g~~------------ 147 (733)
+.+..++|||||+++|.|.|+|+.|+++||++++++++.|+...+ ++|+-+..-.+
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~ 139 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP 139 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence 557888999999999999999999999999999999999875433 24433321100
Q ss_pred ------hhh-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHH
Q 004726 148 ------QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190 (733)
Q Consensus 148 ------~~l-----------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~ 190 (733)
..+ .|-+.... .+-++.|..+++++|++.||||++...++..
T Consensus 140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 000 11111121 2235678999999999999999998655544
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=131.37 Aligned_cols=187 Identities=9% Similarity=0.027 Sum_probs=122.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 388 (733)
||+|||+|.||.+||..|+++|++|++||+++++++...+ .+.....+ ..+. +.+.++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~~~s----------~~~~~~~~~~~ 60 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTGVAN----------LRELSQRLSAP 60 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCcccCC----------HHHHHhhcCCC
Confidence 7999999999999999999999999999999998776432 12110000 0011 345679
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhccc-CCCCcEEEEecCCCCC--CCCeeEEecCCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT-SSQDRIIGAHFFSPAH--VMPLLEIVRTER 463 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~-~~~~~~ig~h~~~p~~--~~~lveiv~~~~ 463 (733)
|+||.|+|.+ ..+.+++++.+.++++.+|++.+++.+.+ ...+.+ ....+|+..+....+. ...+.-.+.|
T Consensus 61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG-- 136 (298)
T TIGR00872 61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG-- 136 (298)
T ss_pred CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC--
Confidence 9999999955 66777788988898888887655554333 222222 2222344443322111 0012222333
Q ss_pred CCHHHHHHHHHHHHHcCC---eeEEEcCCC-C----cchhhhhHH---HHHHHHHHHHc-C--CCHHHHHHHH
Q 004726 464 TSAQVILDLMTVGKIIKK---VPVVVGNCT-G----FAVNRAFFP---YSQSARLLVSL-G--VDVFRIDSAI 522 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~---~~v~v~d~p-G----fi~nRl~~~---~~~Ea~~l~~~-G--v~~~dID~a~ 522 (733)
+++.++.++++++.++. ..+++++.. | .+.|-+... .+.|++.+++. | ++++++-.+|
T Consensus 137 -~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 137 -DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred -CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 79999999999999996 467887632 1 122444333 34589999977 4 5999999998
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-12 Score=134.76 Aligned_cols=182 Identities=17% Similarity=0.111 Sum_probs=120.1
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC--
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-- 386 (733)
+|+|||+|.||.+||..|+++|++|++||+++++.+... +.| ...+.+. +.++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence 699999999999999999999999999999998766531 112 1222333 3333
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccCCCCcEEEEecCCCCCCCCee------E
Q 004726 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPLL------E 457 (733)
Q Consensus 387 -~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~~~ig~h~~~p~~~~~lv------e 457 (733)
++|+||.|+|.+..+ +.++..+.+.++++.+++..+++.+.+ ++.+.+.. .|.+|.+.|..+... -
T Consensus 58 ~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~~ 132 (299)
T PRK12490 58 EAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGYC 132 (299)
T ss_pred CCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCCe
Confidence 379999999966444 455577777788888776543333322 33333321 134555433322111 1
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCCCCc-----chhhh-hH---HHHHHHHHHHHc-C--CCHHHHHHHH
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGNCTGF-----AVNRA-FF---PYSQSARLLVSL-G--VDVFRIDSAI 522 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d~pGf-----i~nRl-~~---~~~~Ea~~l~~~-G--v~~~dID~a~ 522 (733)
++.+. +++++++++++++.+|. ..+++++ +|- ++|++ .. ..+.|++.+.++ | ++++++-.++
T Consensus 133 ~~~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 133 LMVGG--DKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred EEecC--CHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 33222 78999999999999997 6888886 441 23333 32 334699999986 7 8999988888
Q ss_pred H
Q 004726 523 R 523 (733)
Q Consensus 523 ~ 523 (733)
.
T Consensus 210 ~ 210 (299)
T PRK12490 210 R 210 (299)
T ss_pred c
Confidence 4
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=134.48 Aligned_cols=182 Identities=16% Similarity=0.120 Sum_probs=121.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC--
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-- 386 (733)
+|+|||+|.||.+||..|+++|++|++||+++++.+... +.| +...++. +.++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEG-------------ATGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHhhc
Confidence 799999999999999999999999999999998876642 122 1222233 2233
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccCCCCcEEEEecCCCCCCCCe------eE
Q 004726 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPL------LE 457 (733)
Q Consensus 387 -~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~~~ig~h~~~p~~~~~l------ve 457 (733)
++|+||.++|.+..+ ..++..+...++++.++++.+++.+.. .+.+.+.. .|.+|.+.|..+.. ..
T Consensus 58 ~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~~ 132 (301)
T PRK09599 58 PAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGYC 132 (301)
T ss_pred CCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCCe
Confidence 479999999965444 455577777888888776544443322 23333221 14555443322211 12
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC----eeEEEcCCCCc-----chh-hhhHH---HHHHHHHHHH---cCCCHHHHHHH
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKK----VPVVVGNCTGF-----AVN-RAFFP---YSQSARLLVS---LGVDVFRIDSA 521 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~----~~v~v~d~pGf-----i~n-Rl~~~---~~~Ea~~l~~---~Gv~~~dID~a 521 (733)
++.+ .+++++++++++++.+++ ..+++++ +|- ++| -+... .+.|++.+.+ .|++++++-.+
T Consensus 133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~-~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 133 LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGP-VGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred EEec--CCHHHHHHHHHHHHHHcccccCCeEeECC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3333 379999999999999999 7888887 342 223 33333 2458999886 46899999999
Q ss_pred HH
Q 004726 522 IR 523 (733)
Q Consensus 522 ~~ 523 (733)
+.
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 84
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=7e-12 Score=133.73 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=113.9
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
.+++|+|||+|.||.++|..|.+.|+ +|++||+++++++.+. +.|.. ....++. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~-----------~~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLG-----------DRVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCC-----------ceecCCHHH
Confidence 35789999999999999999999995 8999999998766542 12211 0112233 5
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCCC--------
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV-------- 452 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~~-------- 452 (733)
.+++||+||+|+| ......++.++.+.++++++|++.+| .... .+........++++.||+.+...
T Consensus 63 ~~~~aDvViiavp--~~~~~~v~~~l~~~l~~~~iv~dvgs-~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~ 139 (307)
T PRK07502 63 AVKGADLVILCVP--VGASGAVAAEIAPHLKPGAIVTDVGS-VKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFA 139 (307)
T ss_pred HhcCCCEEEECCC--HHHHHHHHHHHHhhCCCCCEEEeCcc-chHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCH
Confidence 6789999999999 55567788888888888888765444 3322 33333334458999999875432
Q ss_pred ----CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 453 ----MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 453 ----~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+..+.+++...++++.++.+.++++.+|..++++.
T Consensus 140 ~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 140 ELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 12345667777889999999999999999998874
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=132.09 Aligned_cols=153 Identities=11% Similarity=0.022 Sum_probs=111.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc-
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l- 385 (733)
.++|+|||+|.||+++|..|.+.|++|++||+++.. +.+. +.| +...++. +.+
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhh
Confidence 357999999999999999999999999999998632 2110 111 1122333 333
Q ss_pred CCCCEEEEeccCChHHHHHHHHHH-HHhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEEecCCCCCCC------Cee
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVM------PLL 456 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l-~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~~~ig~h~~~p~~~~------~lv 456 (733)
.++|+||.|+| +....+++.++ ...++++++|++.+|+ .++..+.+.+....+|+++||+.++... ..+
T Consensus 91 ~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 46999999999 66777888888 5667889999887774 4556666665555579999998877643 111
Q ss_pred EEecC----CCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 457 EIVRT----ERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 457 eiv~~----~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
-+++. +.++++.++.+.++++.+|.+++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 11221 56788999999999999999999984
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-12 Score=139.51 Aligned_cols=201 Identities=19% Similarity=0.154 Sum_probs=130.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH----HHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
||+|||+|.||.++|..|+++|++|++||+++++++...+.. +..++.++.+. ...+++.+++++ ++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~~ 73 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYEDA 73 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHHH
Confidence 799999999999999999999999999999999877643210 00000000000 001345666666 46
Q ss_pred cCCCCEEEEeccCCh--------HHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHh-cccCC-------CCcEEEEe
Q 004726 385 FKDVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS-------QDRIIGAH 445 (733)
Q Consensus 385 l~~aDlVI~avpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~-~~~~~-------~~~~ig~h 445 (733)
+++||+||.|||.+. .....+.+.+.+.++++++|+. +||+++. ++. ..... ..-.+..+
T Consensus 74 ~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~ 152 (411)
T TIGR03026 74 IRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYN 152 (411)
T ss_pred HhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEEC
Confidence 899999999999764 2455666788888888887764 4555443 222 11111 11123444
Q ss_pred cCCCCCCCCe-------eEEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCC-----Ccchhhh---hHHHHHHHHHHH
Q 004726 446 FFSPAHVMPL-------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRA---FFPYSQSARLLV 509 (733)
Q Consensus 446 ~~~p~~~~~l-------veiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d~p-----Gfi~nRl---~~~~~~Ea~~l~ 509 (733)
|-.. ..+.. ..++.| .+++..+.++++++.++ +.++++++.. .++.|-+ ..+++||+..+.
T Consensus 153 Pe~~-~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 153 PEFL-REGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred CCcC-CCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4111 11111 124455 48999999999999998 5777776522 2344533 256789999988
Q ss_pred Hc-CCCHHHHHHHH
Q 004726 510 SL-GVDVFRIDSAI 522 (733)
Q Consensus 510 ~~-Gv~~~dID~a~ 522 (733)
+. |+++.++-.++
T Consensus 230 ~~~GiD~~~v~~~~ 243 (411)
T TIGR03026 230 EALGIDVYEVIEAA 243 (411)
T ss_pred HHhCCCHHHHHHHh
Confidence 77 99999998888
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-12 Score=121.35 Aligned_cols=129 Identities=17% Similarity=0.265 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeCCccc
Q 004726 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (733)
Q Consensus 31 ~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~ 110 (733)
.+.+.+.+.++.+..+..+ .+.|.+.|+...+ ...++ +.|..+|+|||+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~----------------------~~~i~-~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFA----------------------GLAIY-NALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHH----------------------HHHHH-HHHHhcCCCEEEEEcchHH
Confidence 4677888889988876443 3444444432111 12455 6688899999999999999
Q ss_pred chhhHHhhhcCEEEEeCCceEeCccccCCCCCChh---------------hhhhhccccC--HHHHHHHHHcCCCCCHHH
Q 004726 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG---------------GTQRLPRLVG--LSKAIEMMLLSKSITSEE 173 (733)
Q Consensus 111 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g---------------~~~~l~r~~G--~~~a~~l~ltG~~i~a~e 173 (733)
|+|+.++++||+|+++++++|+++....+..+... ....+.+..| .....+++.++..++|+|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 99999999999999999999999777666544322 1233677788 677788888888999999
Q ss_pred HHHcCCccEE
Q 004726 174 GWKLGLIDAV 183 (733)
Q Consensus 174 A~~~Glv~~v 183 (733)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=122.48 Aligned_cols=154 Identities=25% Similarity=0.309 Sum_probs=108.5
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 15 i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
|++|+++.+ ++ ...++|.++|+.+.+|+++++|||+.. |.|+++... ..+. +.|
T Consensus 2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i 55 (207)
T TIGR00706 2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL 55 (207)
T ss_pred EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence 566776654 21 236789999999999999999999863 777776532 2333 456
Q ss_pred hcCC--CcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCcccc------------CCCCCC------------h--hh
Q 004726 95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG------------F--GG 146 (733)
Q Consensus 95 ~~~~--kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~P~------------~--g~ 146 (733)
..++ |||||.++|.|.|+|+.|+++||.+++++++.++...+. +|+-+. . ..
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~ 135 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL 135 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence 6666 999999999999999999999999999999988764442 333210 0 00
Q ss_pred h----hhh-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHH
Q 004726 147 T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (733)
Q Consensus 147 ~----~~l-----------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (733)
+ ..+ .|-+......+ +..|+.+++++|++.||||++...+++.+...+
T Consensus 136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 0 001 12223233333 467899999999999999999987776655443
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=135.85 Aligned_cols=192 Identities=15% Similarity=0.123 Sum_probs=125.4
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc----ccc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l 385 (733)
+|+|||+|.||.+||.+|+++|++|++||+++++.+...+. ...|. .+...+++ +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999988765321 00010 01112222 235
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCe------eEEe
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL------LEIV 459 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l------veiv 459 (733)
+++|+||.|||.+..+ .+++.++.+.++++.||++.+++.+...........+ .|.||...|..+.. .-++
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~gi~fvdapVsGG~~gA~~G~~im 138 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--KGILFVGSGVSGGEEGARKGPSIM 138 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--cCCEEEcCCCCCCHHHHhcCCcCC
Confidence 6799999999965554 5566888888999998877665554432222111111 14555444432211 1233
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCee------EEEcCCC-C----cchhhhhHH---HHHHHHHHHH--cCCCHHHHHHHHH
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVP------VVVGNCT-G----FAVNRAFFP---YSQSARLLVS--LGVDVFRIDSAIR 523 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~------v~v~d~p-G----fi~nRl~~~---~~~Ea~~l~~--~Gv~~~dID~a~~ 523 (733)
.| .++++++.++++++.++.++ .++++.. | .+.|-+.++ .+.|++.++. .|++++++-.++.
T Consensus 139 ~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 139 PG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred CC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 33 37999999999999999873 6777631 2 233545443 3469999874 5899999988884
Q ss_pred hc
Q 004726 524 SF 525 (733)
Q Consensus 524 ~~ 525 (733)
.+
T Consensus 217 ~w 218 (467)
T TIGR00873 217 EW 218 (467)
T ss_pred Hh
Confidence 44
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.4e-11 Score=125.53 Aligned_cols=205 Identities=16% Similarity=0.070 Sum_probs=133.5
Q ss_pred cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCCCEEEEeccCC
Q 004726 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (733)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVI~avpe~ 398 (733)
|.+||..|+++|++|++||++++.++... ++...+.| +..+++. +.+++||+||+|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 89999999999999999999998654311 11112222 3434444 6678999999999955
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHH----hcccCCCCcEEEEecCCCCCC----CCeeEEecCC------CC
Q 004726 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTE------RT 464 (733)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l----~~~~~~~~~~ig~h~~~p~~~----~~lveiv~~~------~t 464 (733)
. ..+.++..+.+.++++++|+ ++|+.++... .+.+..+.+.+|.||++|... ...++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 4 46677788988899998876 4555555533 234443445667877766542 2224455543 23
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCCCcc---hhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcCCCccHHHHH
Q 004726 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFGLPIGPFQLL 535 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v~d~pGfi---~nRl~~~~----~~Ea~~l~~~-Gv~~~dID~a~-~~~G~p~Gpf~~~ 535 (733)
+++.+++++++++.+|+++++++..-|-. +|.++.+. ..|++.+.+. |.+|.+.-.-+ ... -.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 89999999999999999998887432322 24444332 3588888866 67777655444 221 13556666
Q ss_pred HhhchHHHHHHH
Q 004726 536 DLAGYGVAAATS 547 (733)
Q Consensus 536 D~~Gld~~~~~~ 547 (733)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 667777655543
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-11 Score=150.79 Aligned_cols=188 Identities=15% Similarity=0.067 Sum_probs=131.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||+|.||.+||.+|+++|++|++||+++++.+... +.| ....++. +.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~a~~ 60 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELG-------------GHRCDSPAEAAKD 60 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhc
Confidence 5799999999999999999999999999999998877642 222 1223344 67789
Q ss_pred CCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEE--EecCCCCCC--------CCe
Q 004726 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIG--AHFFSPAHV--------MPL 455 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig--~h~~~p~~~--------~~l 455 (733)
||+||.|+|++..++..++ ..+.+.+.++.+++. +||+.+....+....- .-.| .+|.+.|.. +.+
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l-~~~g~~~~~lDaPVsGg~~~A~~G~L 138 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI-RSTILPLQLQKLEKKL-TERKEQIFLVDAYVSKGMSDLLNGKL 138 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHH-HhcCCceEEEEccCcCCHHHHhcCCe
Confidence 9999999998887776665 346677788887754 5666665433322110 0113 455444432 233
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCC-----cchhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH-H
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTG-----FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-R 523 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~pG-----fi~nRl~~----~~~~Ea~~l~~~-Gv~~~dID~a~-~ 523 (733)
.-++.| +++++++++++++.+|+.++++ ++ +| -++|.++. ..+.||+.+.+. |++++.+-.++ .
T Consensus 139 ~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~-~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~ 214 (1378)
T PLN02858 139 MIIASG---RSDAITRAQPFLSAMCQKLYTFEGE-IGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISN 214 (1378)
T ss_pred EEEEcC---CHHHHHHHHHHHHHhcCceEEecCC-CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 434444 7899999999999999988875 65 33 23455433 335699998866 99999999888 5
Q ss_pred hcC
Q 004726 524 SFG 526 (733)
Q Consensus 524 ~~G 526 (733)
+.|
T Consensus 215 s~g 217 (1378)
T PLN02858 215 AAG 217 (1378)
T ss_pred CCc
Confidence 544
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=121.60 Aligned_cols=198 Identities=20% Similarity=0.217 Sum_probs=134.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH---H-----HHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT---I-----EANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~---i-----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
.+|+|||+|.+|.++|..++++|++|+++|+|+.+++..... + ...+...++ .++++.|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~------------~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE------------SGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHh------------cCCceEec
Confidence 689999999999999999999999999999999998875321 0 111222222 25688899
Q ss_pred CccccCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcc-------cCCCCcEEE
Q 004726 381 DYSEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEK-------TSSQDRIIG 443 (733)
Q Consensus 381 ~~~~l~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~-------~~~~~~~ig 443 (733)
+.+.++.||++|.|||. |+.......+.|.+.++++.+++.-+++.|-+ ++..- +..+..|.-
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99999999999999984 66667777788999999999887655544432 22211 222223322
Q ss_pred EecCCCCCCCC---eeE------EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----Ccchh--h-hhHHHHHHHH
Q 004726 444 AHFFSPAHVMP---LLE------IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVN--R-AFFPYSQSAR 506 (733)
Q Consensus 444 ~h~~~p~~~~~---lve------iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~p-----Gfi~n--R-l~~~~~~Ea~ 506 (733)
.| .|-+.+| +.| ++.| .+++..+.+..|++.+-+..+.+.+.. ...-| | +..++.||..
T Consensus 158 ay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla 233 (436)
T COG0677 158 AY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA 233 (436)
T ss_pred ee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 22 3333332 223 3333 389999999999999877766554422 12223 2 2468899966
Q ss_pred HHH-HcCCCHHHHHHHH
Q 004726 507 LLV-SLGVDVFRIDSAI 522 (733)
Q Consensus 507 ~l~-~~Gv~~~dID~a~ 522 (733)
.+. +.|++..++-.+.
T Consensus 234 li~~~~GIdvwevIeaA 250 (436)
T COG0677 234 LICNAMGIDVWEVIEAA 250 (436)
T ss_pred HHHHHhCCcHHHHHHHh
Confidence 655 5599988877666
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-11 Score=130.23 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=104.0
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHC-CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+ |.||+++|+.|.+. |++|+++|++.+. .++. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 48999999 99999999999964 8999999985211 1111 457
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHh---CCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCCCC-----Ce
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PL 455 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~---~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~~~-----~l 455 (733)
++||+||.|+| +....++++++.++ ++++++|++.+|+.. +..+ .....+|+|.||+..+... ..
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 88888999999876 689999988777642 2222 2233479999998877532 33
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+-+++. ..++.++.+.++++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 335554 345567899999999999999884
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=132.54 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=119.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHH----HHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE----ANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~----~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
||+|||+|.||.++|..++. ||+|++||+++++++...+.+. ..+++++.. ...++..+++. ++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~~ 70 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNEA 70 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhhh
Confidence 79999999999999988875 9999999999999888654321 111111111 11244445554 56
Q ss_pred cCCCCEEEEeccCChH---------HHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCC-CCcEEEEecCCCCCCCC
Q 004726 385 FKDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS-QDRIIGAHFFSPAHVMP 454 (733)
Q Consensus 385 l~~aDlVI~avpe~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~-~~~~ig~h~~~p~~~~~ 454 (733)
+++||+||+|||++.+ ...++++.+.. ++++.+++ ..||+++....+.... .+. ++.| +|....+
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV-~~STv~pgtt~~l~~~~~~~--~v~~-~PE~l~~ 145 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV-IKSTVPVGFTAAMHKKYRTE--NIIF-SPEFLRE 145 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE-EeeecCCchHHHHHHHhhcC--cEEE-CcccccC
Confidence 7999999999998743 33455677776 57787765 3555555433322211 111 2222 3332221
Q ss_pred ee---------EEecCCCCCHHHHHHHHHHHHH--cCCeeE-EEcC-----CCCcchhhhh---HHHHHHHHHHHHc-CC
Q 004726 455 LL---------EIVRTERTSAQVILDLMTVGKI--IKKVPV-VVGN-----CTGFAVNRAF---FPYSQSARLLVSL-GV 513 (733)
Q Consensus 455 lv---------eiv~~~~t~~e~~~~~~~l~~~--lG~~~v-~v~d-----~pGfi~nRl~---~~~~~Ea~~l~~~-Gv 513 (733)
.- -++.|. +++..+.+.+++.. ++..+. ++++ ...++.|-+. .+++||+..+.+. |+
T Consensus 146 G~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~Gi 223 (388)
T PRK15057 146 GKALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGL 223 (388)
T ss_pred CcccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 11 133332 34556777777754 554333 4543 2234445442 4788999888876 99
Q ss_pred CHHHHHHHH
Q 004726 514 DVFRIDSAI 522 (733)
Q Consensus 514 ~~~dID~a~ 522 (733)
++.++-.++
T Consensus 224 D~~eV~~a~ 232 (388)
T PRK15057 224 NTRQIIEGV 232 (388)
T ss_pred CHHHHHHHh
Confidence 999999888
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-11 Score=133.41 Aligned_cols=200 Identities=18% Similarity=0.147 Sum_probs=124.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
.||+|||+|.||.++|.+|++ |++|++||+++++++...+..... .+. ..++... .+++.++++.+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~----~e~---~~~~l~~-~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVN----LET---TEEELRE-ARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCC----CCC---CHHHHHh-hCCeeEEeCHHHHcCC
Confidence 479999999999999999887 699999999999988753211000 000 0111111 2456777777788999
Q ss_pred CEEEEeccCCh--------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc----ccCC------CCcEEEEecCCCC
Q 004726 389 DMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGE----KTSS------QDRIIGAHFFSPA 450 (733)
Q Consensus 389 DlVI~avpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~----~~~~------~~~~ig~h~~~p~ 450 (733)
|++|.|||.+. .......+.+.+.++++.+|+. .||+++....+ .+.. ...|.-.| +|.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~-~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~--~PE 154 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVY-ESTVYPGCTEEECVPILARMSGMTFNQDFYVGY--SPE 154 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEE-ecCCCCcchHHHHHHHHHhccCCCcCCCeeEee--CCC
Confidence 99999999652 2223334578888888887764 44444432221 1111 11222222 222
Q ss_pred CCCC---------eeEEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcC-----CCCcchhhhh---HHHHHHHHHHHHc-
Q 004726 451 HVMP---------LLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGN-----CTGFAVNRAF---FPYSQSARLLVSL- 511 (733)
Q Consensus 451 ~~~~---------lveiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d-----~pGfi~nRl~---~~~~~Ea~~l~~~- 511 (733)
...+ +--++.|. +++..+.+.++++.+. ..++++.+ ...++.|-+. .+++||+..+.+.
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~ 232 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL 232 (425)
T ss_pred cCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 11145553 5788899999999986 34555544 1123334332 5778999988877
Q ss_pred CCCHHHHHHHH
Q 004726 512 GVDVFRIDSAI 522 (733)
Q Consensus 512 Gv~~~dID~a~ 522 (733)
|+++.++-.++
T Consensus 233 GiD~~~v~~a~ 243 (425)
T PRK15182 233 NIDTEAVLRAA 243 (425)
T ss_pred CcCHHHHHHHh
Confidence 99999998887
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.5e-11 Score=124.34 Aligned_cols=198 Identities=18% Similarity=0.260 Sum_probs=137.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH----HHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
+||+|||+|..|...+.+|+..||+|+++|+++++++...+.. +..|+.+++++..+ +|+.+|+|+ +
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 3799999999999999999999999999999999999876542 44566666654332 579999999 5
Q ss_pred ccCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcc---cC--CCCc-E-EEEe---
Q 004726 384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TS--SQDR-I-IGAH--- 445 (733)
Q Consensus 384 ~l~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~--~~~~-~-ig~h--- 445 (733)
+++++|++|+|||. |......+.+++.++++..++|+ +-||+|+...... +. .+.+ | +...
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 79999999999975 55677788888999988876654 5677776532221 11 1111 1 1111
Q ss_pred ---------cCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcC-----CCCcchhhhhH---HHHHHHH
Q 004726 446 ---------FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGN-----CTGFAVNRAFF---PYSQSAR 506 (733)
Q Consensus 446 ---------~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~l--G~~~v~v~d-----~pGfi~nRl~~---~~~~Ea~ 506 (733)
|++|..+ ++... ++.+.+.+.++++.+ ...|++..+ .-.+..|-++. +++||..
T Consensus 152 LREG~Av~D~~~PdRI-----ViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia 224 (414)
T COG1004 152 LREGSAVYDFLYPDRI-----VIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA 224 (414)
T ss_pred hcCcchhhhccCCCeE-----EEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444433 44432 344666677777654 455665533 22456676653 6889988
Q ss_pred HHHHc-CCCHHHHHHHH
Q 004726 507 LLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 507 ~l~~~-Gv~~~dID~a~ 522 (733)
.+.+. |++..+|-..+
T Consensus 225 ~ice~~g~D~~~V~~gI 241 (414)
T COG1004 225 NICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHHhCCCHHHHHHHc
Confidence 88877 99999988876
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-11 Score=120.84 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=126.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC----CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
+||+|||+|+||.+|+..|.++| .+|++.++++++.+...++ ++... +++. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------------------~g~~~-~~~~~~ 58 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------------------YGVVT-TTDNQE 58 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------------------cCCcc-cCcHHH
Confidence 58999999999999999999999 5899999999987643221 12222 3333 6
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEec-CC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-TE 462 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~-~~ 462 (733)
.+.++|+||+||. |....+++.++.. ..++.+|+|...+++++.+...+. ..+++.+.|+.|...+..+..+. +.
T Consensus 59 ~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 59 AVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred HHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence 7888999999997 8888899999988 778889999999999999999988 77899999999998887777665 57
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEE
Q 004726 463 RTSAQVILDLMTVGKIIKKVPVV 485 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~ 485 (733)
..+++..+.+.++++.+|+...+
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v 157 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEV 157 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEe
Confidence 78999999999999999987655
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-11 Score=148.47 Aligned_cols=190 Identities=19% Similarity=0.189 Sum_probs=130.2
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
.+++|+|||+|.||.+||.+|+++|++|++||+++++.+... +.| ... .++. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G------------a~~-~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAG------------GLA-GNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC------------Cee-cCCHHHHH
Confidence 357899999999999999999999999999999998876532 122 111 2333 667
Q ss_pred CCCCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHHHHh---cccCCCCcEEEEecCCCCCCC-------
Q 004726 386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLNIVG---EKTSSQDRIIGAHFFSPAHVM------- 453 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~~l~---~~~~~~~~~ig~h~~~p~~~~------- 453 (733)
++||+||.|||++.+++..++. .+.+.++++.+++. +||.++.... +.+.. .-.|.+|.+.|..+
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 8999999999987777666653 35566778887764 5565555333 32221 01255665544222
Q ss_pred -CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC-----cchhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 454 -PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 454 -~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG-----fi~nRl~----~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+.-++.| +++.+++++++++.+|+..++++..+| -++|.++ .+.+.|++.+.+. |++++.+-.++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 23333344 688999999999999998887654345 2345443 3445799988866 99999988887
Q ss_pred -HhcC
Q 004726 523 -RSFG 526 (733)
Q Consensus 523 -~~~G 526 (733)
.+.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 5544
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=121.73 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=111.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|||+|.||.++|..|...|++|++++++.++..... .+.| +...+..+++++|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhcC
Confidence 5899999999999999999999999999888755432211 1111 2222222678899
Q ss_pred CEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCC-------CCCeeEEe-
Q 004726 389 DMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEIV- 459 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~-------~~~lveiv- 459 (733)
|+|+.++|+. ....++ +++.+.++++++| +.++++.+.......+...+++-+.|..|.+ .+..+...
T Consensus 75 DVVvLaVPd~--~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDE--VQAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHH--HHHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 9999999943 336777 7798899999988 7788888887765555556788888988887 44333322
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCeeE
Q 004726 460 -RTERTSAQVILDLMTVGKIIKKVPV 484 (733)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lG~~~v 484 (733)
.....+.+..+.+..+++.+|..+.
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~ 177 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRA 177 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 3455678999999999999998865
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-10 Score=119.88 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=110.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC----eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
+|+|||+|.||.+++..|.++|+ +|+++|+++++.+...+. ...+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------------------~~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------------------YPGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------------------cCCeEEECCHHHH
Confidence 69999999999999999999994 799999999876553210 0012333343 45
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-EecCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~~~~ 463 (733)
+.+||+||.|+| +....++++++.+.++++++|++.++++++..+...+. .+.+..+|..|......+. ++.+..
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999998 66677888888888888888888888888888887664 3455666644322212222 345666
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
.+++..+.+.+++..+|. ++.+.
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEC
Confidence 788889999999999995 45554
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=123.50 Aligned_cols=196 Identities=17% Similarity=0.147 Sum_probs=120.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||+.+|..|+++|++|++||++++.++...+... ......+ . .....+..+++. +.+++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~-~------~~~~~~~~~~~~~~~~~~ 71 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRE---NPRYLPG-I------KLPDNLRATTDLAEALAD 71 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCc---ccccCCC-C------cCCCCeEEeCCHHHHHhC
Confidence 58999999999999999999999999999999988766432100 0000000 0 000123344455 46789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-------HHhcccCCCCcEEEEecCCCCC-------CC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSSQDRIIGAHFFSPAH-------VM 453 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-------~l~~~~~~~~~~ig~h~~~p~~-------~~ 453 (733)
||+||.|+|. .....++.++.+.+++++++++.++++.+. .+.+........ .....|.. ..
T Consensus 72 ~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~~ 147 (325)
T PRK00094 72 ADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGLP 147 (325)
T ss_pred CCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCCC
Confidence 9999999994 567788888988888898887766555542 122222110011 11112221 11
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc----------------------chhhh---hHHHHHHHHHH
Q 004726 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF----------------------AVNRA---FFPYSQSARLL 508 (733)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGf----------------------i~nRl---~~~~~~Ea~~l 508 (733)
.++. +.+ .+.+.++.+.++++..|..+....+..|. ..|.+ ....++|++.+
T Consensus 148 ~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l 224 (325)
T PRK00094 148 TAVV-IAS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224 (325)
T ss_pred cEEE-EEe--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 1222 222 37889999999999999877666554431 22322 23345677777
Q ss_pred HHc-CCCHHHHHHH
Q 004726 509 VSL-GVDVFRIDSA 521 (733)
Q Consensus 509 ~~~-Gv~~~dID~a 521 (733)
.+. |++++.+...
T Consensus 225 a~~~G~d~~~~~~~ 238 (325)
T PRK00094 225 GVALGANPETFLGL 238 (325)
T ss_pred HHHhCCChhhhhcc
Confidence 755 7777776543
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=121.99 Aligned_cols=153 Identities=14% Similarity=0.051 Sum_probs=119.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC----CeeEEEeCChHH-HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
|.+|+|||+|.||.+++..|.++| ++|++|+++++. ++.... . ...+..+++.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~-----------~-----------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD-----------K-----------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH-----------H-----------cCCeEEeCCH
Confidence 358999999999999999999998 789999987542 222110 0 0112223333
Q ss_pred -cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-c
Q 004726 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 460 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~ 460 (733)
+.+.++|+||+|+| ++...++++++.+.++++++|+|...++++.++.+.++. .+++.+.|+.|...+..+..+ .
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 45789999999999 777888899998888888888888999999999987653 489999999888877776666 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEE
Q 004726 461 TERTSAQVILDLMTVGKIIKKVPVV 485 (733)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~ 485 (733)
++..+++..+.+..++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6677899999999999999987754
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-10 Score=118.19 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=124.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCe---eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~---V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
||+|||+|.||.+|+..|.+.|++ |.++|+++++.+...+. ......+++. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------------------~~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------------------FPKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------------------cCCceEeCCHHHHH
Confidence 699999999999999999999864 57899998886653221 0112223344 456
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~ 465 (733)
++||+||+|+| ++....++.++. +.++.++++..++.++..+...+....+.+..||..|......+..+...
T Consensus 60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~--- 132 (258)
T PRK06476 60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP--- 132 (258)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence 88999999999 566677777662 45777888888899999999887665678888888776544444444322
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcC--CC------CcchhhhhHHHHHHHHHHH-HcCCCHHHHHHHH
Q 004726 466 AQVILDLMTVGKIIKKVPVVVGN--CT------GFAVNRAFFPYSQSARLLV-SLGVDVFRIDSAI 522 (733)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v~d--~p------Gfi~nRl~~~~~~Ea~~l~-~~Gv~~~dID~a~ 522 (733)
.+.++++++.+|..+.+..+ .. ++..| ++.++.++.... +.|+++++..+++
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 25789999999988764322 11 12222 223555665554 4589998877776
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-12 Score=141.02 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=119.4
Q ss_pred eEEEEcCCcCcHHHHH--HH----HHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 310 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~--~l----~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
||+|||+|.||.+.+. .+ +..|++|++||++++.++.....+...+... .. ..++..++|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~----~~--------~~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL----GA--------PLKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc----CC--------CeEEEEeCCHH
Confidence 7999999999998665 23 4568899999999999888665554433221 11 1357778886
Q ss_pred cccCCCCEEEEecc----------CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCC--CCcEEEEecCCCC
Q 004726 383 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA 450 (733)
Q Consensus 383 ~~l~~aDlVI~avp----------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~--~~~~ig~h~~~p~ 450 (733)
+++++||+||++++ |++.+|..+++++...+.+++++.+++|+..+.+++..+.. | +.+.+||.||+
T Consensus 70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv 148 (423)
T cd05297 70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM 148 (423)
T ss_pred HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence 78999999999998 45889999999999999999999999999999999988763 6 89999999999
Q ss_pred CCC-----CeeEEecCCCCCHHHHHHHHHHHHHcCCee
Q 004726 451 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKVP 483 (733)
Q Consensus 451 ~~~-----~lveiv~~~~t~~e~~~~~~~l~~~lG~~~ 483 (733)
..+ +..+ ++.-.+..........+.+.+|..+
T Consensus 149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 665 2222 1111122225556666777777643
|
linked to 3D####ucture |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=119.31 Aligned_cols=202 Identities=11% Similarity=0.055 Sum_probs=135.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCC-hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||+|.||.++|..|...|++|+++++. .++.+++. +.| +..++..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 57999999999999999999999998876554 33433321 112 222332356789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCC-------CCeeE-Ee
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLE-IV 459 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~-------~~lve-iv 459 (733)
||+||.++|+.. ....+.+++.+.++++. ++|...++++..+....+...+++-+.|..|.+. +..+. ++
T Consensus 60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 999999999442 35566677888888886 4577889999888777665568999999999974 55553 43
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCe-------eE--EEc-CCCC-c-chhhhhHHHHH---HHHHHHHcCCCHHHHHHHH-
Q 004726 460 -RTERTSAQVILDLMTVGKIIKKV-------PV--VVG-NCTG-F-AVNRAFFPYSQ---SARLLVSLGVDVFRIDSAI- 522 (733)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lG~~-------~v--~v~-d~pG-f-i~nRl~~~~~~---Ea~~l~~~Gv~~~dID~a~- 522 (733)
.+...+.+..+.+..++..+|.. .. .+. +.-+ + ++.=..-+|+. |++ ++.|++++.--...
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~ 215 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV 215 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 56667889999999999999988 31 111 1001 0 00001112222 444 78899988866655
Q ss_pred HhcCCCccHHHHHHhhchH
Q 004726 523 RSFGLPIGPFQLLDLAGYG 541 (733)
Q Consensus 523 ~~~G~p~Gpf~~~D~~Gld 541 (733)
..+ .|-..++-..|+.
T Consensus 216 ~~~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 216 HEL---KLIVDLIYEGGIT 231 (314)
T ss_pred HHH---HHHHHHHHHhcHH
Confidence 322 4666666666663
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.4e-10 Score=113.91 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=128.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC---e-eEEEeC-ChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~---~-V~~~d~-~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
.||+|||+|.||.+++..++++|. + |+++++ ++++++...+. . .+..+++.
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------------~-~~~~~~~~~ 61 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------------------Y-NVSTTTDWK 61 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------------------c-CcEEeCChH
Confidence 589999999999999999998873 3 777887 45665443211 0 12223444
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-cC
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RT 461 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~~ 461 (733)
+.++++|+||.|+| +....++++++.+.++ +.+|+|.+.+++++.+...+....+++..||..+......+... ..
T Consensus 62 ~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~ 138 (245)
T PRK07634 62 QHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMG 138 (245)
T ss_pred HHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeC
Confidence 55789999999999 6667888888887765 56788889999999998887655678889997766555443333 45
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcch------h-hhhHHHHHHHHH-HHHcCCCHHHHHHHH
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAV------N-RAFFPYSQSARL-LVSLGVDVFRIDSAI 522 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~------n-Rl~~~~~~Ea~~-l~~~Gv~~~dID~a~ 522 (733)
...+++..+.+.+++..+|..+.+ .+.--... + -+++.++..... .++.|+++++-.+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~ 206 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV 206 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 567899999999999999998864 32111111 0 112222222222 345588888866665
|
|
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=117.50 Aligned_cols=146 Identities=21% Similarity=0.222 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeC
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~ 106 (733)
.-+..++.+|.+.|+++..|++|++|||+..++.| ++.+++++. +.+ +.+...+|||||.++
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~----------------~~i-~~~~~~~kpVia~~~ 86 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR----------------QAL-ERFRASGKPVIAYAD 86 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH----------------HHH-HHHHHhCCeEEEEeC
Confidence 34567799999999999999999999999888877 777766552 333 446668999999999
Q ss_pred CcccchhhHHhhhcCEEEEeCCceEeCcccc------------CCCCCC---------hhhhhh-----------h----
Q 004726 107 GLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FGGTQR-----------L---- 150 (733)
Q Consensus 107 G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~P~---------~g~~~~-----------l---- 150 (733)
| |.+||+.|+++||.+++.+.+.|+...+. +|+-+. .+..+. +
T Consensus 87 ~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l 165 (222)
T cd07018 87 G-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALL 165 (222)
T ss_pred C-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHH
Confidence 8 88999999999999999999999986442 333221 010010 0
Q ss_pred -------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHH
Q 004726 151 -------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192 (733)
Q Consensus 151 -------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~ 192 (733)
.|-+...... -+..|..+++++|++.||||++...+++.+.
T Consensus 166 ~~~~~~f~~~Va~~R~~~~~~~~-~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 166 DSLWDQYLADVAASRGLSPDALE-ALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHH-HHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 1112222222 2445999999999999999999987777654
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-10 Score=133.78 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=116.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
++||+|||+|.||.++|..+.+.| ++|++||+++++++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 578999999999999999999999 48999999998866532 122110 112233 45
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--CHHHHhcccC-CCCcEEEEecCCCCC----------
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH---------- 451 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~~~ig~h~~~p~~---------- 451 (733)
+++||+||+|+| ++....+++++.+.++++++|++.+|+. ....+.+.+. ...+|++.||+..+.
T Consensus 61 ~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 789999999999 6778899999999888888776544432 2455555443 356899999975332
Q ss_pred --CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 452 --~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
....+.+++...++++..+.+.++++.+|+.++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 233456788888899999999999999999998884
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=129.79 Aligned_cols=153 Identities=11% Similarity=0.041 Sum_probs=108.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
.+||+|||+|.||.++|..|.+.|++|++||++.+. +.+ .+.| +...++. +.+.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~G-------------v~~~~~~~el~~ 423 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLG-------------VSYFSDADDLCE 423 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcC-------------CeEeCCHHHHHh
Confidence 358999999999999999999999999999998643 221 1112 1223344 3343
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEEecCCCCCCCC-----ee-
Q 004726 387 -DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-----LL- 456 (733)
Q Consensus 387 -~aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~--~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-----lv- 456 (733)
+||+||.|+| +.....++.++.. .++++++|++.+|+ .++..+........+|++.||+.++.... ..
T Consensus 424 ~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~ 501 (667)
T PLN02712 424 EHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAF 501 (667)
T ss_pred cCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhh
Confidence 5899999999 6667787888765 57889999887776 44555555555555799999988776531 11
Q ss_pred ----EEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 457 ----EIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 457 ----eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
-++.++....+.++.+.++++.+|.+++.+.
T Consensus 502 lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 502 VFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 1123334456677778899999999999884
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=116.12 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=104.6
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CC---HHHHHHHhhccccccCcc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LT---QDKANNALKMLKGVLDYS 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 383 (733)
++||+|||+|.||+++|..|+++|++|+++|+++. .+... +.|. +. ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 35799999999999999999999999999999643 22211 1111 00 000000112344455666
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-HHHhcccCCCCcEEEEecCCCCCCCCe-e-----
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHFFSPAHVMPL-L----- 456 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~~~ig~h~~~p~~~~~l-v----- 456 (733)
.++++|+||+|++.. ...++++++.+.++++++|++.++++.. ..+...+.....+.+.+++......|. +
T Consensus 70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 788999999999843 3467788899988999988877777664 345555443222334444221111110 0
Q ss_pred -EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 457 -EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 457 -eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
++.-+ ..+.++.+.++++..|..+.+.+|.-+
T Consensus 148 g~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 148 GALAIE---ASPALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred CceEec---CCchHHHHHHHHHhcCCCceecchhHH
Confidence 11112 124568899999999988888887554
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-11 Score=124.96 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHH-HHHHHHHHHHHhCC---CC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY-VYTSLKKWSQLYGN---FF 694 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~-~~~~~~~~~~~~~~---~~ 694 (733)
+++||.||++.+++|||++++++|++ |++|||.+|..|+|+|...-|||+++|.+|+|. +.+.++++...+.. .+
T Consensus 186 ~pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~ 264 (321)
T PRK07066 186 VPGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKL 264 (321)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhc
Confidence 58999999999999999999999999 999999999999999822339999999999998 44555555444321 24
Q ss_pred CCCHHHHHHHH------CCCCc--cccceeecCC
Q 004726 695 KPSRFLEERAT------KGIPL--VRIIFHRFSN 720 (733)
Q Consensus 695 ~p~~~l~~~~~------~g~~g--~g~gfy~y~~ 720 (733)
.+++++.+|++ ++.++ +..++|.|.+
T Consensus 265 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 265 VAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred CCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556666665 44555 4668888764
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.1e-10 Score=114.58 Aligned_cols=141 Identities=17% Similarity=0.139 Sum_probs=101.9
Q ss_pred HHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEeccCChH
Q 004726 323 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 400 (733)
Q Consensus 323 iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avpe~~~ 400 (733)
||+.|.++| ++|+++|++++.++.+. +.|.++. ..++.+.+++||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCC--HH
Confidence 688999999 79999999999887752 3343321 1112467899999999999 99
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEEecCCCC------------CCCCeeEEecCCCCCH
Q 004726 401 LKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA 466 (733)
Q Consensus 401 ~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~~~ig~h~~~p~------------~~~~lveiv~~~~t~~ 466 (733)
....+++++.++++++++|++.+|+ .++..+.+......+|+|.||+..+ ..+..+-+++++.+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 9999999999999999999877765 3334444555556799999997666 2345677888998999
Q ss_pred HHHHHHHHHHHHcCCeeEEEc
Q 004726 467 QVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+.++.+.++++.+|.+++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999998873
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=109.30 Aligned_cols=162 Identities=16% Similarity=0.119 Sum_probs=106.7
Q ss_pred eEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 310 kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
||+||| +|.||.++|..|+++|++|+++++++++++...+... ......|. . ..+..++..+.++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~---~~~~~~g~-~--------~~~~~~~~~ea~~~a 69 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKAL---EELGHGGS-D--------IKVTGADNAEAAKRA 69 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHH---hhccccCC-C--------ceEEEeChHHHHhcC
Confidence 799997 8999999999999999999999999988766433211 10001110 0 011222334678899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-----------------HHHhcccCCCCcEEEEecCCCCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPAH 451 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-----------------~~l~~~~~~~~~~ig~h~~~p~~ 451 (733)
|+||.|+| .....++++++...++. ++|++.+.++.. +.+++.++...+++....+.+..
T Consensus 70 DvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~ 146 (219)
T TIGR01915 70 DVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAV 146 (219)
T ss_pred CEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHH
Confidence 99999999 77677778888766654 677776666654 23444443325666664432221
Q ss_pred C-------CCeeEEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004726 452 V-------MPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN 488 (733)
Q Consensus 452 ~-------~~lveiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d 488 (733)
. .+....+.|+ ++++.+.+..|.+.+ |..|+.++.
T Consensus 147 ~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 147 LLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 1 1122234454 677899999999999 999998764
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.8e-10 Score=118.80 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=97.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.+||..|+++|++|++|+++++..+...+...+. . .. .|. ....++..++++ +.+++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~-~-~~-~g~-------~~~~~~~~~~~~~e~~~~ 74 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR-E-YL-PGV-------ALPAELYPTADPEEALAG 74 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc-c-cC-CCC-------cCCCCeEEeCCHHHHHcC
Confidence 4899999999999999999999999999999998776643210000 0 00 010 000123344555 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC-----HHHHhcccCC--CCcEE-EEecCCCCCC---CCee
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDRII-GAHFFSPAHV---MPLL 456 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-----~~~l~~~~~~--~~~~i-g~h~~~p~~~---~~lv 456 (733)
||+||+|+|+. ..++++ +.+++++++++.++++. ...+++.+.. ..++. ..-|..+... .+..
T Consensus 75 aD~Vi~~v~~~--~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~ 148 (328)
T PRK14618 75 ADFAVVAVPSK--ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAA 148 (328)
T ss_pred CCEEEEECchH--HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeE
Confidence 99999999955 223443 44567777776666544 2233333321 11111 1112111111 1222
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
.++.+ .+++.++.++++++..|..+....|.-|
T Consensus 149 ~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g 181 (328)
T PRK14618 149 TVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVG 181 (328)
T ss_pred EEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 33333 3788999999999999987775444333
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-09 Score=118.12 Aligned_cols=199 Identities=16% Similarity=0.191 Sum_probs=127.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHH----HHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
+||+|||+|.+|..+|..|+++| ++|+++|+++++++...+.. +..+++++.++ .-.++.+++++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~~ 72 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTDV 72 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcCH
Confidence 57999999999999999999984 78999999999988754321 11111111110 11247888887
Q ss_pred -cccCCCCEEEEeccCC-------------hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH---HhcccC---------
Q 004726 383 -SEFKDVDMVIEAVIES-------------VPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTS--------- 436 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~-------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~--------- 436 (733)
+++++||++|.|||.. +.....+.++|.++++++++|+. .||.++.. +...+.
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f~ 151 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINFQ 151 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCeE
Confidence 5799999999999633 33667777889999999887753 44544432 221111
Q ss_pred ---CCCcEEEEe----cCCCCCCCCeeEEecCCC--CCHHHHHHHHHHHHHcCC-eeEEEc-----CCCCcchhhh---h
Q 004726 437 ---SQDRIIGAH----FFSPAHVMPLLEIVRTER--TSAQVILDLMTVGKIIKK-VPVVVG-----NCTGFAVNRA---F 498 (733)
Q Consensus 437 ---~~~~~ig~h----~~~p~~~~~lveiv~~~~--t~~e~~~~~~~l~~~lG~-~~v~v~-----d~pGfi~nRl---~ 498 (733)
.|++..... |.+|+.+ |+.+.. ..+++.+.+.+++..+-+ .++.+. |...++.|-+ -
T Consensus 152 v~~~PErl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~ 226 (473)
T PLN02353 152 ILSNPEFLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQR 226 (473)
T ss_pred EEECCCccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHH
Confidence 122111111 1222221 334432 226688999999998753 445443 2334555644 3
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 499 FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 499 ~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+++||...+.+. |+++.+|-.++
T Consensus 227 Iaf~NEla~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 227 ISSVNAMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 5889998777766 99999999888
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-08 Score=108.59 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=93.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.+||..|+++|++|++|++++.. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 37999999999999999999999999999998631 11 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCCHHH------HhcccCCCCcEEEEecCCCCC------CCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNI------VGEKTSSQDRIIGAHFFSPAH------VMP 454 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~~------l~~~~~~~~~~ig~h~~~p~~------~~~ 454 (733)
||+||.|+|. ...+.+++++... +++++++++.++++.+.. +....-....++.+ ..|.. ..+
T Consensus 48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i--~gp~~a~ei~~~~~ 123 (308)
T PRK14619 48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVL--SGPNLSKEIQQGLP 123 (308)
T ss_pred CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEE--ECCCcHHHHhcCCC
Confidence 9999999994 4677788888764 678888877666454432 11111011122210 11110 112
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
..-++.+ .+.+..+.+++++...|..++..+|.-|
T Consensus 124 ~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 124 AATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 2222333 2788999999999999988886666444
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=111.86 Aligned_cols=143 Identities=16% Similarity=0.151 Sum_probs=110.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC----eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
||+|||+|+||++|+..|.++|. +|+++|+++++.. +....+. +.
T Consensus 5 kI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~------------------------------~~~~~~~~~~ 54 (260)
T PTZ00431 5 RVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP------------------------------FVYLQSNEEL 54 (260)
T ss_pred EEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC------------------------------eEEeCChHHH
Confidence 79999999999999999999873 4999998875310 0112222 45
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-EecCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~~~~ 463 (733)
+.+||+||.|+| +.....++.++.+.++++ +|+|..+++..+.+...+....+++...|..|........ +++...
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999998 888899999998877665 5568888899988888776555567777777766655443 456677
Q ss_pred CCHHHHHHHHHHHHHcCCeeEE
Q 004726 464 TSAQVILDLMTVGKIIKKVPVV 485 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~ 485 (733)
++++..+.+..+++.+|....+
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 8899999999999999987755
|
|
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=103.95 Aligned_cols=145 Identities=24% Similarity=0.334 Sum_probs=100.9
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
.+|.++. .+++...+.|.++|+.+++++ ++.|+|.=. |.|+++. ....++ +.|.
T Consensus 2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~----------------~~~~I~-~~l~ 55 (178)
T cd07021 2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVD----------------SALEIV-DLIL 55 (178)
T ss_pred EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHH----------------HHHHHH-HHHH
Confidence 4555644 477788899999999998876 677777411 1122222 122455 6688
Q ss_pred cCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhh--------hh------hccccC--HHHH
Q 004726 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT--------QR------LPRLVG--LSKA 159 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~--------~~------l~r~~G--~~~a 159 (733)
.+++|||+.|+|.|.++|+.++++||++++++++.|+.+++- +..|+. .. +.+.-| ...+
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a 131 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA 131 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 899999999999999999999999999999999999988553 332220 11 111112 3444
Q ss_pred HHHHHcC-------------CCCCHHHHHHcCCccEEcC-cchHH
Q 004726 160 IEMMLLS-------------KSITSEEGWKLGLIDAVVT-SEELL 190 (733)
Q Consensus 160 ~~l~ltG-------------~~i~a~eA~~~Glv~~vv~-~~~l~ 190 (733)
..|+-.. -.++++||++.|++|.+.+ .++|+
T Consensus 132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 5555544 3799999999999999985 34443
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-09 Score=120.90 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=104.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc-C
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-K 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-~ 386 (733)
++|+|||+|.||.++|..|.+.|++|++||++... +.+. +.| +...++. +.+ .
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~~ 107 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCER 107 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhhc
Confidence 48999999999999999999999999999998543 2211 111 2223344 323 5
Q ss_pred CCCEEEEeccCChHHHHHHHHHHH-HhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCCCC-----CeeEE
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEI 458 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~-~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~~~-----~lvei 458 (733)
+||+||.|+| +.....++.++. ..++++++|++.+|... ...+...+.....|++.||+..+... ....+
T Consensus 108 ~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~ 185 (667)
T PLN02712 108 HPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFV 185 (667)
T ss_pred CCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEE
Confidence 6999999999 677788888875 56788998887665432 23344444444479999997766521 11122
Q ss_pred ec-----CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 459 VR-----TERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 459 v~-----~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
.. .+....+.++.+.++++.+|.+++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 186 YEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 22 222345667888899999999999884
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-10 Score=117.01 Aligned_cols=108 Identities=23% Similarity=0.272 Sum_probs=84.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.++|..|+++||+|++|.++++..++.... +.+ .+++. |.. ....+.+++|+ +++++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N-~~yLp-~i~-------lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-REN-PKYLP-GIL-------LPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcC-ccccC-Ccc-------CCcccccccCHHHHHhc
Confidence 589999999999999999999999999999999988875432 111 11111 211 11357778888 67788
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
||+|+.+|| .+..+++++++...+++++++++.+.++..
T Consensus 72 ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 72 ADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred CCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccC
Confidence 999999999 899999999998889999999887776554
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.7e-09 Score=99.91 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=103.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH-HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
|++|+|+|+|.||+++|..|+++||+|++-.++.+. ++.+.+.+ ...+...+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence 468999999999999999999999999999666554 43332211 12355555667889
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC----------------HH-HHhcccCCCCcEEE-Ee---
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID----------------LN-IVGEKTSSQDRIIG-AH--- 445 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~----------------~~-~l~~~~~~~~~~ig-~h--- 445 (733)
.||+||.+|| ......+.+++...+. +.|+++.|-.+. .+ .+++.++.. +++. .|
T Consensus 60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999 7777788888887765 778876554321 11 112222222 2222 11
Q ss_pred ---cCCCCCC-CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 446 ---FFSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 446 ---~~~p~~~-~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
+-+-+.. ....-.+++. +.++.+.+.++.+.+|..|+.++.
T Consensus 136 a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 1111122 3334455554 888999999999999999999875
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-09 Score=116.40 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=119.5
Q ss_pred CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc---cCCCCEEEEe
Q 004726 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE---FKDVDMVIEA 394 (733)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~---l~~aDlVI~a 394 (733)
||..||.+|+++|++|++|||++++.+...+. .|. . ..+....++ +. ++.+|+||.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999988765320 010 0 012333444 22 3458999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh--cccCCCCcEEEEecCCCCCCCCe------eEEecCCCCCH
Q 004726 395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG--EKTSSQDRIIGAHFFSPAHVMPL------LEIVRTERTSA 466 (733)
Q Consensus 395 vpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~--~~~~~~~~~ig~h~~~p~~~~~l------veiv~~~~t~~ 466 (733)
||....+.. ++..+.+.+.++.||++.+++.+..... +.+.. .|+||+..|..+.. --+++|. ++
T Consensus 62 v~~g~~v~~-Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~siM~GG--~~ 134 (459)
T PRK09287 62 VKAGAPVDA-VIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGPSIMPGG--QK 134 (459)
T ss_pred CCCchHHHH-HHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCCEEEEeC--CH
Confidence 997766544 5578888899998887655444433222 22211 25566544432210 1244443 79
Q ss_pred HHHHHHHHHHHHcCCee-------EEEcCCC-C----cchhhhhHH---HHHHHHHHHHc--CCCHHHHHHHHHhc
Q 004726 467 QVILDLMTVGKIIKKVP-------VVVGNCT-G----FAVNRAFFP---YSQSARLLVSL--GVDVFRIDSAIRSF 525 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~-------v~v~d~p-G----fi~nRl~~~---~~~Ea~~l~~~--Gv~~~dID~a~~~~ 525 (733)
++++.++++++.++.++ .++++.. | .+.|-+.+. .+.|++.+++. |++++++-.++..+
T Consensus 135 ~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~w 210 (459)
T PRK09287 135 EAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEW 210 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 99999999999999876 7888631 2 233545443 35699999983 89999998888433
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.5e-10 Score=105.91 Aligned_cols=104 Identities=24% Similarity=0.246 Sum_probs=77.1
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCc-cccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
||+|||+|.||.++|..|+++|++|++|.++++.++...+. ..... +.. ......+..++|+ +++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~--------~~n~~~~~~---~~l~~~i~~t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET--------RQNPKYLPG---IKLPENIKATTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH--------TSETTTSTT---SBEETTEEEESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh--------CCCCCCCCC---cccCcccccccCHHHHhCc
Confidence 79999999999999999999999999999999877764321 11000 110 0111346678887 67899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
+|+||.+|| ....+.+++++.+++++++++++.+.++
T Consensus 70 ad~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 70 ADIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred ccEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999 7778899999999999999988877776
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-09 Score=104.44 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=74.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH--------HHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI--------EANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i--------~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
+||+|||+|.+|..+|..|+++||+|+++|+|++.++...+.. ...+.+.++ -+++.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence 4899999999999999999999999999999999888754211 111111111 25678888
Q ss_pred Cc-cccCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh
Q 004726 381 DY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 432 (733)
Q Consensus 381 ~~-~~l~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 432 (733)
+. +++++||++|.|||. |.....+..+.|.+.++++.+|+ .-||+++....
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppGtt~ 128 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPGTTE 128 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTTHHH
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEeeeh
Confidence 87 458999999999974 45667788889999999998875 45566655333
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-09 Score=115.39 Aligned_cols=126 Identities=20% Similarity=0.316 Sum_probs=92.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.+||+|||+|.||.++|..++..|+ +|+++|++++.++. . . ++..... .......++..++++++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~-~----ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-K-A----LDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-H-H----HHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 99999999987532 1 1 1111110 0011113566677889999
Q ss_pred CCCEEEEec-------------------cCChHHHHHHHHHHHHhCCCC-eEEEecCCCCCHHHHhcccCCC-CcEEEEe
Q 004726 387 DVDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (733)
Q Consensus 387 ~aDlVI~av-------------------pe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~~~ig~h 445 (733)
+||+||+++ +++..+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 567888999999999999775 4556888877777777666654 7888875
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.4e-08 Score=98.65 Aligned_cols=147 Identities=18% Similarity=0.141 Sum_probs=96.9
Q ss_pred cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCCCEEEEeccCC
Q 004726 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (733)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVI~avpe~ 398 (733)
|.+||.+|+++||+|++||+++++.+... .+.+.+.| ...+++. +++++||+||.|+|++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCC-------------CeecCCHHHHHhCCCEEEEecCCH
Confidence 88999999999999999999987654211 01122223 2223333 7789999999999965
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccC-------CCCcEEEEecCCCCCC-CCeeEEecC------CCC
Q 004726 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-------SQDRIIGAHFFSPAHV-MPLLEIVRT------ERT 464 (733)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~-------~~~~~ig~h~~~p~~~-~~lveiv~~------~~t 464 (733)
..+. +++..+.+.++++++|+ ++||+++..+...+. ....+..+||-.-|.. ..-.-++.+ ...
T Consensus 93 aaV~-eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGTF-SIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHHH-HHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 5554 44577888889999875 567777765554332 1224555666332211 111112222 234
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEc
Q 004726 465 SAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
++|.++++.++.+..|+.++++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 89999999999999999999883
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-09 Score=114.16 Aligned_cols=122 Identities=18% Similarity=0.303 Sum_probs=87.4
Q ss_pred EEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 311 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
|+|||+|.||.++|..++..|+ +|+++|++++.++ +... . +.... .......++..+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~--d-l~~~~--------~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKAL--D-ISQAA--------PILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHH--H-HHHhh--------hhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 9999999987543 2221 0 01100 0111123566667788899999
Q ss_pred EEEEec--------------cCChHHHHHHHHHHHHhCCCCeE-EEecCCCCCHHHHhcccCC-CCcEEEE
Q 004726 390 MVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA 444 (733)
Q Consensus 390 lVI~av--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~tS~~~~~~l~~~~~~-~~~~ig~ 444 (733)
+||+++ +++..+++++++++.++++++.+ +++|.+.+....+.+.... +.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999976 67899999999999999987774 4577776666555555543 4577775
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.1e-09 Score=94.00 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=72.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
.||+|||+|.+|..++..|.++|++|..+ .+++++.+++...+ ......+..+.+++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~~ 68 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILRD 68 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGCC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------cccccccccccccc
Confidence 48999999999999999999999999865 67777766653211 12222233367899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHh--CCCCeEEEecCCCCCHHHHhcccCCCCcEEEEec
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~--~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~ 446 (733)
+|++|++||++ ....+.++|... ..++++|+=.+.+.+.+.+............+||
T Consensus 69 aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 69 ADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp -SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred CCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 99999999966 566888888877 7788887643334555555554445556667775
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-09 Score=92.58 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=68.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHCC---CeeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc--cCcc
Q 004726 310 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LDYS 383 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G---~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~--~~~~ 383 (733)
||+|||+|.||.+|+..|.++| ++|.++ +++++++++..++. + .... +..+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------------------~-~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------------------G-VQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------------------T-TEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------------------c-cccccCChHH
Confidence 7999999999999999999999 899955 99999987753311 1 2222 3337
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
.++++|+||.||| +....++++++ ....++.+++|.+.
T Consensus 58 ~~~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 58 AAQEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred hhccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 7889999999999 88888999999 66677888877553
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-09 Score=111.54 Aligned_cols=125 Identities=18% Similarity=0.282 Sum_probs=82.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+... .. ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~----~~--------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA----AP--------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh----hh--------hcCCCcEEEeCCCHHHHC
Confidence 4699999999999999999999876 9999999988754321111111 00 011113566667788899
Q ss_pred CCCEEEEec--------------cCChHHHHHHHHHHHHhCCCCeEE-EecCCCCCHHHHhcccCC-CCcEEEE
Q 004726 387 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL-ATNTSTIDLNIVGEKTSS-QDRIIGA 444 (733)
Q Consensus 387 ~aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii-~s~tS~~~~~~l~~~~~~-~~~~ig~ 444 (733)
+||+||+++ .++..+++++++++.+.+++..+| ++|.+.+....+...... +.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999987 356688999999999998665333 344443333233232222 2455554
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-09 Score=111.27 Aligned_cols=125 Identities=23% Similarity=0.308 Sum_probs=90.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
.||+|||+|.||.++|..++..| .+|+++|++++.++ +.. + +..... .......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-l----Dl~~~~------~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-L----DLKHFS------TLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHH-H----HHhhhc------cccCCCeEEEeCCCHHHhCC
Confidence 48999999999999999999999 69999999988755 211 1 100000 00111124555678889999
Q ss_pred CCEEEEec--cCCh------------HHHHHHHHHHHHhCCCC-eEEEecCCCCCHHHHhcccCCC-CcEEEEe
Q 004726 388 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (733)
Q Consensus 388 aDlVI~av--pe~~------------~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~~~ig~h 445 (733)
||+||+++ |+++ .+++++.+++.+++++. .|++||.+.+....+.+....| .+++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999999 7766 88999999999998777 4556777766666665655544 6788764
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.4e-08 Score=94.41 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=124.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
+|+.||+|.||..++.+|++.||+|++||+|+++.+.+.+ .|.....+.++.. +.+...-
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~ga~~a~sl~el~---------~~L~~pr 61 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EGATGAASLDELV---------AKLSAPR 61 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cCCccccCHHHHH---------HhcCCCc
Confidence 6899999999999999999999999999999999887532 2211111111111 3455667
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCe-------eEEecCC
Q 004726 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL-------LEIVRTE 462 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l-------veiv~~~ 462 (733)
.|-.+||- -++..++++++.+.+.++-+|++...+.--..+...-... -.|+||++.-..+.. .-.|.|
T Consensus 62 ~vWlMvPa-g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~--~kgi~flD~GTSGG~~G~~~G~~lMiGG- 137 (300)
T COG1023 62 IVWLMVPA-GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLA--EKGIHFLDVGTSGGVWGAERGYCLMIGG- 137 (300)
T ss_pred EEEEEccC-CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHH--hcCCeEEeccCCCCchhhhcCceEEecC-
Confidence 88999982 2367789999999999999888755543322222211111 237788654332211 113344
Q ss_pred CCCHHHHHHHHHHHHHcCC---eeEEEcC-CCCcch----hhhhHH---HHHHHHHHHHcC---CCHHHHHHHH
Q 004726 463 RTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFAV----NRAFFP---YSQSARLLVSLG---VDVFRIDSAI 522 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~---~~v~v~d-~pGfi~----nRl~~~---~~~Ea~~l~~~G---v~~~dID~a~ 522 (733)
++++++.+.++++.+.. -..++++ ..|..+ |-+=+. -+.|.+.++++. ++.++|.+++
T Consensus 138 --~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 138 --DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred --cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 79999999999998865 3355654 334333 655333 345899999885 4888888888
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.7e-08 Score=103.64 Aligned_cols=176 Identities=15% Similarity=0.083 Sum_probs=108.5
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
+.++||+|||+|.||+++|..|+++| +|++|.++++..+...+.- .....+... ......+..+++. ++
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~-------~~~~~l~~~--~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNH-------RNSRYLGND--VVLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcC-------CCcccCCCC--cccCCCeEEECCHHHH
Confidence 34568999999999999999999999 7899999998876643210 000000000 0011235556666 56
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH------H-HHhcccCCCCcE-EEEecCCCCC--CCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL------N-IVGEKTSSQDRI-IGAHFFSPAH--VMP 454 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~------~-~l~~~~~~~~~~-ig~h~~~p~~--~~~ 454 (733)
++++|+||.|+| ....+.+++++.+.+++++++++.+.++.. + .+.+.+.. .++ +-..|..+.. .+.
T Consensus 75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~ 151 (341)
T PRK12439 75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGY 151 (341)
T ss_pred HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCC
Confidence 889999999999 888889999999999888877766666664 2 33333322 121 1122211111 011
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchh
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN 495 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~n 495 (733)
...++-+. .+++..+.+.+++..-+-++....|..|...-
T Consensus 152 ~t~~via~-~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~ 191 (341)
T PRK12439 152 AAAAVLAM-PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMA 191 (341)
T ss_pred CeEEEEEe-CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHH
Confidence 11122222 26777788888887767666666776654443
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.1e-07 Score=96.00 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=130.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc----cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~ 384 (733)
..|||||+|.||+.+|.+++++|++|.+|+|+.++.+...+. ..+ + ..+..+.++ +.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~-------~~~-~-----------k~i~~~~sieefV~~ 64 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE-------RAK-G-----------KNIVPAYSIEEFVAS 64 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh-------Ccc-C-----------CCccccCcHHHHHHH
Confidence 469999999999999999999999999999999998875431 111 1 123333333 34
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc---ccCCCCcEEEEec-------CCCCCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHF-------FSPAHVMP 454 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~---~~~~~~~~ig~h~-------~~p~~~~~ 454 (733)
++.---|+.+|.-- .....++++|.+++.++-||++...+.-..++.. .....-.|+|+-. .+.|.+
T Consensus 65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSi-- 141 (473)
T COG0362 65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSI-- 141 (473)
T ss_pred hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCc--
Confidence 56677888888644 3346788999999999999987655543333332 2233446777654 233344
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCe------eEEEc-CCCCcch----hhhh---HHHHHHHHHHHHcC--CCHHHH
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKV------PVVVG-NCTGFAV----NRAF---FPYSQSARLLVSLG--VDVFRI 518 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~-d~pGfi~----nRl~---~~~~~Ea~~l~~~G--v~~~dI 518 (733)
+||. ++++.+.+.++++.+..+ ..+++ +..|..+ |-+= +.++.|+..++..+ ++.++|
T Consensus 142 ----MpGG--~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei 215 (473)
T COG0362 142 ----MPGG--QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEI 215 (473)
T ss_pred ----CCCC--CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3553 899999999999887532 23444 5566544 5552 35678999999885 599999
Q ss_pred HHHHHhcC
Q 004726 519 DSAIRSFG 526 (733)
Q Consensus 519 D~a~~~~G 526 (733)
-.+...|.
T Consensus 216 ~~vF~~WN 223 (473)
T COG0362 216 AEVFEEWN 223 (473)
T ss_pred HHHHHHhc
Confidence 99985554
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=6e-07 Score=88.45 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=83.3
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
||+|||. |.||.-++..|.++|+.|++ ++|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~~ 32 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KKA 32 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CCC
Confidence 7999998 99999999999999999861 368
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCC-----CeeEEecCCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTER 463 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~-----~lveiv~~~~ 463 (733)
|+||.|+| +....++++++. .+|++.+|+... +.+. ..+|+|.||...|... ..+ ++..+.
T Consensus 33 DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~~--i~~~---~~~~vg~HPMfGp~~a~~~lf~~~-iv~~~~ 98 (197)
T PRK06444 33 DHAFLSVP--IDAALNYIESYD------NNFVEISSVKWP--FKKY---SGKIVSIHPLFGPMSYNDGVHRTV-IFINDI 98 (197)
T ss_pred CEEEEeCC--HHHHHHHHHHhC------CeEEeccccCHH--HHHh---cCCEEecCCCCCCCcCcccccceE-EEECCC
Confidence 99999999 777677777653 256666665432 2222 3479999997665332 222 334567
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
++++.++.+.++++ |.+++.+.
T Consensus 99 ~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 99 SRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCHHHHHHHHHHHc--CCEEEEeC
Confidence 78888999999998 87777763
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=100.63 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=77.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHCC--------CeeEEEeCC-----hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcc
Q 004726 310 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEVN-----SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G--------~~V~~~d~~-----~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 376 (733)
||+|||+|.||.++|..|+.+| ++|++|.++ ++..+.. .+..+....-+. -.....+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~i--------n~~~~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEII--------NTTHENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHH--------HhcCCCccccCC--CcCCCCe
Confidence 6899999999999999999999 999999984 3332221 111111100000 0012356
Q ss_pred ccccCc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 377 ~~~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
.+++|+ +++++||+||.+|| .+..+.+++++.++++++.++++.+.++..+
T Consensus 71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 677787 57899999999999 8888899999999998888888877776554
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5e-06 Score=89.01 Aligned_cols=175 Identities=8% Similarity=0.082 Sum_probs=100.8
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCcccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l 385 (733)
..+||+|||+|.||+.+|..|+++|++|+++.+++. +.. .+.|. +....-+.....+...++.+.+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAV-----------RENGLQVDSVHGDFHLPPVQAYRSAEDM 70 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHH-----------HhCCeEEEeCCCCeeecCceEEcchhhc
Confidence 345899999999999999999999999999999863 221 11110 0000000000112223344556
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhcccCCCCcEEEE-ec-----CCCCC---CC-C
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGA-HF-----FSPAH---VM-P 454 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~~~ig~-h~-----~~p~~---~~-~ 454 (733)
..+|+||.|++... ..++++.+.+.+.+++++++...++... .+.+.++ ++++++. .+ ..|.. .. .
T Consensus 71 ~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g 147 (313)
T PRK06249 71 PPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYG 147 (313)
T ss_pred CCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCC
Confidence 78999999998332 3567788888888888777666666554 3444433 2344432 22 22210 10 0
Q ss_pred eeEEecCCCCC-----HHHHHHHHHHHHHcCCeeEEEcCCCCcchhhh
Q 004726 455 LLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA 497 (733)
Q Consensus 455 lveiv~~~~t~-----~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl 497 (733)
.+.+-.....+ .+..+.+.++++..|-...+..|....+..++
T Consensus 148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl 195 (313)
T PRK06249 148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKL 195 (313)
T ss_pred cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHh
Confidence 11111111112 46677788888888877766667555444444
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-06 Score=90.92 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=94.1
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCc-cccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
||+|||+|.||..+|..|+++|++|+++++ ++.++...+ .|. +.....+. .-.....++. +..++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~-----------~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE-----------RGLVIRSDHGDA-VVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh-----------CCeEEEeCCCeE-EecceeecCHHHccCC
Confidence 799999999999999999999999999999 766554321 110 00000000 0001123333 33588
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-HHHhcccCCCCcEE-EEecCCCCCCCC-eeE------E
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP-LLE------I 458 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~~~i-g~h~~~p~~~~~-lve------i 458 (733)
+|+||.|++. .....+++++.+.++++++|++...++.. ..+.+.+.. .+++ +..++......+ .+. +
T Consensus 69 ~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 69 FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence 9999999983 34466778888888888877665556553 344444332 2333 222211111111 111 1
Q ss_pred ecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004726 459 VRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCT 490 (733)
Q Consensus 459 v~~--~~t~~e~~~~~~~l~~~lG~~~v~v~d~p 490 (733)
+-| +....+..+.+.+++...|.......|..
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~ 179 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIR 179 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHH
Confidence 111 22234566677777887776655555543
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.8e-07 Score=97.49 Aligned_cols=104 Identities=18% Similarity=0.130 Sum_probs=73.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCc-ccc-C
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEF-K 386 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l-~ 386 (733)
||+|||+|.||..+|..|+++|++|++|+++++.++...+. ..... +... .....+..+++. +.+ .
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~--------~~~~~~~~~~---~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK--------RKNLKYLPTC---HLPDNISVKSAIDEVLSD 70 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc--------CCCcccCCCC---cCCCCeEEeCCHHHHHhC
Confidence 69999999999999999999999999999998876654221 00000 0000 000123445555 344 5
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCCC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI 426 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~ 426 (733)
++|+||.+|| .....++++++.+ .+++++.+++.++++
T Consensus 71 ~~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 71 NATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 8999999998 7777888999987 888887666556665
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-07 Score=99.80 Aligned_cols=111 Identities=21% Similarity=0.136 Sum_probs=78.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-------CeeEEEeCChHH-HHHHHHHHHHHHHHhHhc-CCCCHHHHHHHhhccccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-LLKGIKTIEANVRGLVTR-GKLTQDKANNALKMLKGV 379 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~-g~~~~~~~~~~~~~i~~~ 379 (733)
+||+|||+|.||.++|..|+++| ++|.+|.++++. -++..+.+. ....+ ..+..- .....+..+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in----~~~~N~~ylp~~---~Lp~ni~~t 84 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIIN----TKHENVKYLPGI---KLPDNIVAV 84 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHH----hcCCCcccCCCC---cCCCceEEe
Confidence 47999999999999999999997 899999999862 111111111 11111 111100 122457777
Q ss_pred cCc-cccCCCCEEEEeccCChHHHHHHHHHHHH--hCCCCeEEEecCCCCCH
Q 004726 380 LDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTIDL 428 (733)
Q Consensus 380 ~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~--~~~~~~ii~s~tS~~~~ 428 (733)
+|+ +++++||+||.+|| ++..+++++++.+ .++++++++|.+.++.+
T Consensus 85 sdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred cCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 887 57899999999999 8989999999988 77777777776665543
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-07 Score=98.71 Aligned_cols=99 Identities=17% Similarity=0.274 Sum_probs=68.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+||+|||+|.||.++|..++..|+ +|+++|++++..+ +... . ..+.+. ......++.++++++.+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~--d----~~~~~~-----~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKAL--D----MYEASP-----VGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHH--h----hhhhhh-----ccCCCcEEEecCCHHHhCC
Confidence 389999999999999999999887 8999999876433 2210 0 011110 0111246777888877999
Q ss_pred CCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEE
Q 004726 388 VDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 388 aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
||+||.+++ .+.++.+++.+++.++.+ +.+++
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iI 115 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIV 115 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 999999997 244666667777888764 44443
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.4e-07 Score=94.59 Aligned_cols=110 Identities=18% Similarity=0.117 Sum_probs=74.7
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCccccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
||+|||+|.||+.+|..|+++|++|++++++++..+...+ .|. ++..+ ....+..+++.+.++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~---~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGLRLEDGE---ITVPVLAADDPAELGPQ 67 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCCcccCCc---eeecccCCCChhHcCCC
Confidence 6999999999999999999999999999998877655322 111 00000 00112223444445899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-HHHhccc
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT 435 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~ 435 (733)
|+||.|++ ......+++++.+.+.++++|++...++.. ..+...+
T Consensus 68 d~vila~k--~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 68 DLVILAVK--AYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred CEEEEecc--cccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 99999998 334567888898888888777666666653 3344433
|
|
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=82.20 Aligned_cols=141 Identities=24% Similarity=0.285 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeC
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~ 106 (733)
.+++.+.+-|.+.++.++++ +++.|+|.=. |-|+++.. ...++ +.|...++||++.|.
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~----------------~~~I~-~~i~~~~~pvv~~v~ 66 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA----------------AGNIV-QRIQQSKIPVIIYVY 66 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCcCEEEEEe
Confidence 47778888999999999865 4677777411 22232221 12444 567789999999999
Q ss_pred ---CcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChh--h------hhh------hccccC--HHHHHHHHHcCC
Q 004726 107 ---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG--G------TQR------LPRLVG--LSKAIEMMLLSK 167 (733)
Q Consensus 107 ---G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g--~------~~~------l~r~~G--~~~a~~l~ltG~ 167 (733)
|.|..+|.-++++||.+++.+++.++....-.|.-+... . +.. +.+.-| ...+..++....
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~ 146 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL 146 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence 999999999999999999999999998777433211000 0 111 112223 456677888889
Q ss_pred CCCHHHHHHcCCccEEcCc-chH
Q 004726 168 SITSEEGWKLGLIDAVVTS-EEL 189 (733)
Q Consensus 168 ~i~a~eA~~~Glv~~vv~~-~~l 189 (733)
.++|+||++.|++|.|+.. ++|
T Consensus 147 ~lta~EA~~~G~iD~ia~~~~~l 169 (172)
T cd07015 147 SLTPEEALKYGVIEVVARDINEL 169 (172)
T ss_pred CcCHHHHHHcCCceeeeCCHHHH
Confidence 9999999999999999854 444
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5e-07 Score=96.85 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=75.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|..+...|++|++||++++..... +..++++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 379999999999999999999999999999987542110 1122334 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~ 436 (733)
||+|+.++|...+....+.+++.+.++++++++..+-+..+ ..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999998888888878888889999988754444333 34444443
|
|
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-06 Score=99.95 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=106.5
Q ss_pred cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchh
Q 004726 12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (733)
Q Consensus 12 ~~~i~~i~l~~p----~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (733)
++.|++|+++-+ + .+.++. +.+.+.|+++..|++||+|||.=..+ |+.... .+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a-------------se~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA-------------SEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH-------------HHH
Confidence 567999998654 1 234443 67788899999999999999974322 111110 111
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccc------------cCCCCCChhhhhhh---
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGTQRL--- 150 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~P~~g~~~~l--- 150 (733)
..+.+ ..+....|||||.+.+.|..||.-++++||.++|.+.+..|...+ ++|+.+..-.+-.+
T Consensus 385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 22333 345667899999999999999999999999999999887766444 34443321111100
Q ss_pred -------------------------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHH
Q 004726 151 -------------------------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (733)
Q Consensus 151 -------------------------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (733)
.|.+..... +-+..|+.+++++|++.||||++-..++..+.+.+
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~ 538 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE 538 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence 111222222 22568999999999999999999865555444443
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-07 Score=94.89 Aligned_cols=96 Identities=30% Similarity=0.391 Sum_probs=74.7
Q ss_pred EEEEcC-CcCcHHHHHHHHHCC----CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC-ccc
Q 004726 311 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSE 384 (733)
Q Consensus 311 I~VIG~-G~mG~~iA~~l~~~G----~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 384 (733)
|+|||+ |.||.++|..++..| .+|+++|+++++++.....++...... ...++..++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988777555443322111 1135666777 488
Q ss_pred cCCCCEEEE--------------eccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 385 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 385 l~~aDlVI~--------------avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+++||+||+ .+.++..+++++.+++.+++ ++++++
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i 116 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWII 116 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence 999999999 66678889999999999998 555544
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.5e-08 Score=99.37 Aligned_cols=94 Identities=19% Similarity=0.079 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhc-CcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEE-GIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~e-gv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~ 697 (733)
+.+|.++|++.+|.+++.+++.| |+ +|..+|.. ..-||||+ ||++++|..|+|+..+.-..+...++++
T Consensus 171 c~gf~v~r~l~~y~~~~~~~l~e~g~--~p~~iD~~-~t~fGf~~---g~~~L~d~~gfdv~eal~~gl~~~~~~r---- 240 (380)
T KOG1683|consen 171 CCGFRVNRLLPPYTIGLNELLLEIGA--DPWLIDSL-ITKFGFRV---GERALADGVGFDVAEALAVGLGDEIGPR---- 240 (380)
T ss_pred CCceEEEecccHHHHHHHHHHHHcCC--CHHHHHHH-HHhcCccc---cHHHHhhccCccHHHHHhhccchhccch----
Confidence 67889999999999999999998 55 59999999 67899999 9999999999999666665555544443
Q ss_pred HHHHHHHHCCCCc--cccceeecCCCcc
Q 004726 698 RFLEERATKGIPL--VRIIFHRFSNIFS 723 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y~~~~~ 723 (733)
+.++|+++|+.| +++|||.|..+--
T Consensus 241 -~~eel~~~~~~g~kT~kg~y~y~~~l~ 267 (380)
T KOG1683|consen 241 -IEEELLEKGRAGIKTGKGIYPYARGLT 267 (380)
T ss_pred -hHHHHHHHHhhhhhccCcccccccccc
Confidence 677899999999 8999999986533
|
|
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=84.56 Aligned_cols=130 Identities=17% Similarity=0.206 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 28 LAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vvl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
++..+.+++.+.|..++.++..+.|+|. +.|+ ++. ....++ +.|..+++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG------~v~----------------~~~~i~-~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG------DVF----------------AGMAIY-DTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCC------cHH----------------HHHHHH-HHHHhcCCCceEEE
Confidence 5678899999999999988777777763 3332 221 122455 66888999999999
Q ss_pred CCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhhh------------------hhcccc--CHHHHHHHH
Q 004726 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLV--GLSKAIEMM 163 (733)
Q Consensus 106 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~~------------------~l~r~~--G~~~a~~l~ 163 (733)
.|.|.++|.-++++|| .|++.++++|.+....-+. .|... .+.+.- ......+++
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~---~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 142 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGT---LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADL 142 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 9999999999999999 6888888888754332121 11110 111112 244555667
Q ss_pred HcCCCCCHHHHHHcCCccEE
Q 004726 164 LLSKSITSEEGWKLGLIDAV 183 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~v 183 (733)
-.+..++|+||++.||||++
T Consensus 143 ~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 143 ERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred cCCccccHHHHHHcCCCCcC
Confidence 77888899999999999975
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=83.06 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=115.7
Q ss_pred CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCCCEEEEeccCChHHHHHHHHHHH
Q 004726 332 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE 410 (733)
Q Consensus 332 ~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~ 410 (733)
++|++++|++++++...+. ++ +..+.+. +.+.+||+||.||+ ++...+++.++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~~----------------------~g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKE----------------------LG-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHHH----------------------cC-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence 6899999999887654221 11 2223333 55688999999998 777888889888
Q ss_pred HhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004726 411 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNC 489 (733)
Q Consensus 411 ~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~ 489 (733)
..+.++.+|+|.+.++++..+...+....+++.+.|+.|......+..+ .++.++++..+.+..++..+|....+ .+.
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E~ 143 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PEA 143 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CHH
Confidence 7777778899999999999998888655578899998887776655554 56778889999999999999976644 321
Q ss_pred --CCcch-----hhhhHHHHHHHH--HHHHcCCCHHHHHHHH
Q 004726 490 --TGFAV-----NRAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (733)
Q Consensus 490 --pGfi~-----nRl~~~~~~Ea~--~l~~~Gv~~~dID~a~ 522 (733)
..+.+ .-+++.+ -|++ ..+..|+++++-.+++
T Consensus 144 ~~~~~talsgsgPA~~~~~-~~al~~~~v~~Gl~~~~A~~lv 184 (245)
T TIGR00112 144 LMDAVTALSGSGPAYVFLF-IEALADAGVKQGLPRELALELA 184 (245)
T ss_pred HcchHHhhccCcHHHHHHH-HHHHHHHHHHcCCCHHHHHHHH
Confidence 11111 1112222 2322 3456689988888776
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=93.21 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=76.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHh---CHHHHHHHHHHHHHHhCC-CC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV---GANYVYTSLKKWSQLYGN-FF 694 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~---G~d~~~~~~~~~~~~~~~-~~ 694 (733)
.++++.||++.++++||+.++++|++ |+++||.++..|+|+|...-|||++.|.. |++........+....++ .+
T Consensus 185 ~~G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~ 263 (308)
T PRK06129 185 IDGFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERG 263 (308)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccC
Confidence 35789999999999999999999999 89999999999999883334999999987 899999888888888765 78
Q ss_pred CCCHHHHHHHH
Q 004726 695 KPSRFLEERAT 705 (733)
Q Consensus 695 ~p~~~l~~~~~ 705 (733)
.|+|+++++++
T Consensus 264 ~~~~~~~~~~~ 274 (308)
T PRK06129 264 QPVPWDGELVA 274 (308)
T ss_pred CCchhhHHHHH
Confidence 89999999887
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-05 Score=79.79 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=96.6
Q ss_pred cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc-CccccCCCCEEEEeccCC
Q 004726 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEFKDVDMVIEAVIES 398 (733)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l~~aDlVI~avpe~ 398 (733)
|+.||..++.+||+|++.|.|.+-.+.. .+++.-+. .+..++ |.++++.+.+.|+-.|-.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedA-------------GV~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDA-------------GVEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhc-------------CcEEecCchhhhhcceEEEEecccc
Confidence 7889999999999999999987765542 11221222 244444 458899999999999843
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh----cccCCCCcEEEEecCCCCCCC----CeeEEecCCCC------
Q 004726 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----EKTSSQDRIIGAHFFSPAHVM----PLLEIVRTERT------ 464 (733)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~~~~~~ig~h~~~p~~~~----~lveiv~~~~t------ 464 (733)
. ..-.+.++|.++++.+++|+ ||.+.++-.+- ..+..+.+-+|+..+.|.-+- ...-++.+..+
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA 171 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA 171 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence 2 34466788999999999886 45554443333 334444444555544443210 11123443333
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEc
Q 004726 465 SAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+++.++++.++++..||.++++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 78999999999999999998874
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.6e-06 Score=77.47 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=63.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH-HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||.|..|.+.|++|..+|++|++-.+..+ ..+++. +. .....+..++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~-------------Gf~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------AD-------------GFEVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HT-------------T-ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HC-------------CCeeccHHHHHhh
Confidence 6899999999999999999999999999988776 444432 22 2333333478899
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
+|+|+..+| -++-.++| ++|.+.++++.++.- +.++.+
T Consensus 61 aDvV~~L~P--D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni 99 (165)
T PF07991_consen 61 ADVVMLLLP--DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI 99 (165)
T ss_dssp -SEEEE-S---HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred CCEEEEeCC--hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence 999999999 55556777 789999999998753 444444
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.9e-06 Score=85.53 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=72.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC---hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc--
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-- 382 (733)
.||+|||+|.||+.+|..|++.|+ +|+++|.+ ++.+.+-.- ..-+.|.-..+.....+.++....+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-------~~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-------KASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-------ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 479999999999999999999999 79999999 655544210 00112222233333344443332222
Q ss_pred -----------cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 383 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 383 -----------~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+.++++|+||+| .++++.|..++.++....+...+++
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 246789999999 6999999999999988877766665
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=89.69 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=63.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|||.|.||.++|.+|...|++|+++++.....+.+. ..| ....+-.+++++|
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~sl~Eaak~A 72 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVMSVSEAVRTA 72 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEECCHHHHHhcC
Confidence 5899999999999999999999999999987643322221 111 1222222678999
Q ss_pred CEEEEeccCChHHHHHHH-HHHHHhCCCCeEEE
Q 004726 389 DMVIEAVIESVPLKQKIF-SELEKACPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~ 420 (733)
|+|+.++|. .+.. .++ .++.+.++++++++
T Consensus 73 DVV~llLPd-~~t~-~V~~~eil~~MK~GaiL~ 103 (335)
T PRK13403 73 QVVQMLLPD-EQQA-HVYKAEVEENLREGQMLL 103 (335)
T ss_pred CEEEEeCCC-hHHH-HHHHHHHHhcCCCCCEEE
Confidence 999999996 4444 555 56888999999775
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.5e-06 Score=89.76 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=68.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||+++..... ...+ ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------~~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE------------KELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH------------HHcC-------------CEe-cCHHHHHhh
Confidence 58999999999999999999999999999998653211 0001 111 233 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+|+.++|...+.+.-+-++..+.++++++++ |++
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI-N~a 240 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILV-NTA 240 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECc
Confidence 999999999888777776677888899999886 444
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-06 Score=82.30 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
..++..+...+...+..++.++..+-|.| .+.| +|+. ....++ +.|...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence 44788899999999998886644443443 3333 2221 122455 567788899999
Q ss_pred EeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhh------------------hhhccccC--HHHHHH
Q 004726 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIE 161 (733)
Q Consensus 104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~------------------~~l~r~~G--~~~a~~ 161 (733)
.+.|.|.+.|..++++++ .|++.+++++.+....-|. .|-+ ..+...-| .....+
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK 171 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999743 5666666666654432111 1111 11222223 345556
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
++-.+..++|+||++.||||+|+..
T Consensus 172 ~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 172 DTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HhhCCccccHHHHHHcCCccEEeec
Confidence 6778889999999999999999854
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=87.10 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=68.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.|...|.+|+.||++....+... .. .+....++ +.+++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------EL-------------GLTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hc-------------CceecCCHHHHhhc
Confidence 4799999999999999999999999999999863211100 00 11222234 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
||+|+.++|...+...-+=++..+.++++++++ |++.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aR 285 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTAR 285 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCC
Confidence 999999999888876665567788899999886 4553
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=84.65 Aligned_cols=134 Identities=12% Similarity=0.078 Sum_probs=86.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||++... . +. .....++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~--~---------------~~------------~~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN--D---------------GI------------SSIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc--c---------------Cc------------ccccCCHHHHHhh
Confidence 58999999999999999888889999999987421 0 00 0001233 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccCC-CCcEEEEecCC--CC---CCCCeeEE
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSS-QDRIIGAHFFS--PA---HVMPLLEI 458 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~-~~~~ig~h~~~--p~---~~~~lvei 458 (733)
||+|+.++|...+.+.-+-++..+.++++++++ |+|. +....+.+.+.. .....++..|. |. +..+.+-+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nvii 252 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVIL 252 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEE
Confidence 999999999888876666566777889999876 4543 333345454432 23334444332 21 23456667
Q ss_pred ecC-C-CCCHHHHHHH
Q 004726 459 VRT-E-RTSAQVILDL 472 (733)
Q Consensus 459 v~~-~-~t~~e~~~~~ 472 (733)
+|+ . .++++..+.+
T Consensus 253 TPHi~g~~t~e~~~~~ 268 (303)
T PRK06436 253 SPHVAGGMSGEIMQPA 268 (303)
T ss_pred CCccccccCHHHHHHH
Confidence 777 3 2455554443
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-05 Score=86.33 Aligned_cols=137 Identities=14% Similarity=0.060 Sum_probs=87.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.||..+|+.+...|.+|++||++....+.. .+. .+....++ +.+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-----------~~~-------------g~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-----------KET-------------GAKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-----------hhc-------------CceecCCHHHHHhh
Confidence 589999999999999999999999999999875321111 000 12222344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC-CC--HHHHhcccC-CCCcEEEEecCC--C------CCCCCe
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST-ID--LNIVGEKTS-SQDRIIGAHFFS--P------AHVMPL 455 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~-~~--~~~l~~~~~-~~~~~ig~h~~~--p------~~~~~l 455 (733)
||+|+.++|...+.+.-+-+++.+.++++++++ |++. -. -..+.+.+. ..-.-.++.-|. | -+.++.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pN 334 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPN 334 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCC
Confidence 999999999888877766677888899999876 5553 22 234444443 222333444332 2 234456
Q ss_pred eEEecCCC-CCHHHHH
Q 004726 456 LEIVRTER-TSAQVIL 470 (733)
Q Consensus 456 veiv~~~~-t~~e~~~ 470 (733)
+-++|+-. ++.+..+
T Consensus 335 vilTPHiag~t~~~~~ 350 (386)
T PLN03139 335 HAMTPHISGTTIDAQL 350 (386)
T ss_pred eEEcccccccCHHHHH
Confidence 66666532 2444433
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=75.19 Aligned_cols=99 Identities=23% Similarity=0.300 Sum_probs=67.2
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
.||+|||+ |.+|..+|..|...+. +++++|++++.++.-...+......... .......+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence 38999999 9999999999999875 8999999998666543333222111000 112223567899
Q ss_pred CCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 386 ~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
++||+||.+.-. +..+.+++..++.++.+. .+++.
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~-~~viv 116 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPD-AIVIV 116 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTT-SEEEE
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCc-cEEEE
Confidence 999999988821 344566666778888744 44443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.1e-05 Score=83.63 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=77.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||++.+..... .......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence 589999999999999999999999999999876432100 000011223 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEEe
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAH 445 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~~~ig~h 445 (733)
||+|+.++|...+.+.-+-++....++++++++ |++ + +.-..+.+.+.. .-+-.++.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~~g~i~gaalD 251 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALDSGKVKGAMLD 251 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHhcCCeeeEEec
Confidence 999999999999887777677888899999875 555 2 334455555432 22334444
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0002 Score=77.92 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=108.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeE------EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~------~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
++|+|||.|.+|...|..|...|++|+ .+|.+.+.-+++. +.| ....+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dG-------------F~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENG-------------FKVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcC-------------CccCCHH
Confidence 589999999999999999999999999 4444444443331 112 2222223
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCC----------CC
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HV 452 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~----------~~ 452 (733)
++++.||+|+..+|+. ....+++++.+.+++++++.- +-+..+.......+....++-+-|-.|- .-
T Consensus 93 Ea~~~ADvVviLlPDt--~q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK--QHSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH--HHHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 6789999999999966 377788999999999998853 3344333221111122233333332222 11
Q ss_pred CCeeEEec-CCCCCHHHHHHHHHHHHHcCCe---eEEEc---C-CCCcchhh-hhHHHH-----HHHHHHHHcCCCHHHH
Q 004726 453 MPLLEIVR-TERTSAQVILDLMTVGKIIKKV---PVVVG---N-CTGFAVNR-AFFPYS-----QSARLLVSLGVDVFRI 518 (733)
Q Consensus 453 ~~lveiv~-~~~t~~e~~~~~~~l~~~lG~~---~v~v~---d-~pGfi~nR-l~~~~~-----~Ea~~l~~~Gv~~~dI 518 (733)
.|.+-.|- -...+-.+.+.+..+...+|.. ++... + ..-....| ++...+ .-.-.++++|.+|++-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 22222332 1345667889999999999976 22211 1 01122222 232222 1233577889988876
Q ss_pred HH
Q 004726 519 DS 520 (733)
Q Consensus 519 D~ 520 (733)
-.
T Consensus 250 ~k 251 (487)
T PRK05225 250 EK 251 (487)
T ss_pred HH
Confidence 54
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.6e-06 Score=79.46 Aligned_cols=117 Identities=11% Similarity=0.040 Sum_probs=70.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||+|.||.+++..|++.| ++|+++|+++++.+...+.+.. .. + .....+..+.+++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~~ 81 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLAE 81 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhcccc
Confidence 57999999999999999999996 7899999999887664332110 00 0 0111122244789
Q ss_pred CCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccC-CCCcEEEEe
Q 004726 388 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIGAH 445 (733)
Q Consensus 388 aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~-~~~~~ig~h 445 (733)
+|+||.|+|.... +....+. ...+++++++++.++....+.+.+... ...+++..|
T Consensus 82 ~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~ 139 (155)
T cd01065 82 ADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGL 139 (155)
T ss_pred CCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCH
Confidence 9999999996653 1111121 123577888776554433233433332 233444444
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.8e-06 Score=88.41 Aligned_cols=92 Identities=16% Similarity=0.035 Sum_probs=64.5
Q ss_pred ceEEEEcCCcCcHHHHHHHH-HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|+|||+|.||.++|..|+ ..|.+|++||+++...... .+...+++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---------------------------~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT---------------------------YVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh---------------------------hccccCCHHHHHH
Confidence 47999999999999999994 4688999999986532110 01123344 5678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
+||+|+.++|.......-+-.++.+.++++++++..+.+..
T Consensus 200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~ 240 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSL 240 (332)
T ss_pred hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcc
Confidence 99999999997766543222456677899998764444433
|
|
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=77.44 Aligned_cols=138 Identities=23% Similarity=0.278 Sum_probs=98.3
Q ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 17 IITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 17 ~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
.|.++.+ ++.....++...+..+..++..+.|+| .+.|+ |+. ....++ +.|
T Consensus 11 ~i~i~g~----I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~----------------~~~~i~-~~l 63 (171)
T cd07017 11 IIFLGGP----IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVT----------------AGLAIY-DTM 63 (171)
T ss_pred EEEEcCE----EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHH----------------HHHHHH-HHH
Confidence 3445444 678889999999999988766555555 33333 221 122444 557
Q ss_pred hcCCCcEEEEeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhhh-----------------hhccc--
Q 004726 95 EDCKKPIVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRL-- 153 (733)
Q Consensus 95 ~~~~kp~Iaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~~-----------------~l~r~-- 153 (733)
...+.|+++.+.|.|.++|.-++++|| .|++.+++.|.+.+...+.. +. ... .+...
T Consensus 64 ~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~-g~-~~~~~~~~~~l~~~~~~~~~~~~~~tg 141 (171)
T cd07017 64 QYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAG-GQ-ASDIEIQAKEILRLRRRLNEILAKHTG 141 (171)
T ss_pred HhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 778999999999999999999999999 89999999999887655432 21 111 11111
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCccEE
Q 004726 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183 (733)
Q Consensus 154 ~G~~~a~~l~ltG~~i~a~eA~~~Glv~~v 183 (733)
.......+++..+..++|+||+++|+||+|
T Consensus 142 ~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 142 QPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 233455567778999999999999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.1e-05 Score=76.44 Aligned_cols=136 Identities=20% Similarity=0.212 Sum_probs=97.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
..++..+..++...|..++..+..+.|.| .+-| +++. ....++ +.|..++.|+++
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 98 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYINSPG------GSVT----------------AGDAIY-DTIQFIRPDVQT 98 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC------CcHH----------------HHHHHH-HHHHhcCCCcEE
Confidence 45889999999999999987654444444 3333 2322 122455 667888899999
Q ss_pred EeCCcccchhhHHhhhcC--EEEEeCCceEeCccccC-CCCCChhhh------------------hhhcccc--CHHHHH
Q 004726 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPGFGGT------------------QRLPRLV--GLSKAI 160 (733)
Q Consensus 104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~-Gl~P~~g~~------------------~~l~r~~--G~~~a~ 160 (733)
.+.|.|.+.|.-++++|| .|++.+++.|.+..... |- ..|-. ..+...- ......
T Consensus 99 ~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~ 176 (207)
T PRK12553 99 VCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR 176 (207)
T ss_pred EEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999 69999999998876543 21 12211 1122222 335556
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
+++-.+..++|+||++.||||+|++.
T Consensus 177 ~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 177 KDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHhcCccccHHHHHHcCCccEEcCc
Confidence 67778999999999999999999853
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.7e-06 Score=86.42 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=67.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|+++|..|+..| ++|+++|++++.++.....+....... ... ..+. +.+++.++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~-~~~-----------~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL-PSP-----------VKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc-CCC-----------eEEE-cCCHHHhC
Confidence 38999999999999999999999 589999999988765543332211000 000 0122 34557789
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 387 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+||+||.++.. +..+.+++..++.++++. ++++
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~-~~vi 114 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFD-GIFL 114 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence 99999999853 344566667778887764 4443
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.7e-05 Score=82.93 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=73.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||+|||+|.||+-+|..|+++|++|++++|+++.++...+. +.+. ....|... . -.+. ..+.+....+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl~-i~~~g~~~------~-~~~~-~~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGLT-LVEQGQAS------L-YAIP-AETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCeE-EeeCCcce------e-eccC-CCCccccccc
Confidence 379999999999999999999999999999988776654210 0000 00011000 0 0011 1111335678
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhcccC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTS 436 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~ 436 (733)
|+||.|+- ..-..+.++.+.+.+.++++|++.-.++... .+...+.
T Consensus 72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 99999995 3334567788999999999887766666554 3444443
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.1e-05 Score=87.28 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=55.0
Q ss_pred ceEEEEcCCcCcHHHHH--HHH----HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~--~l~----~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|.||...+. .++ ..|.+|+++|+++++++.+...++..+... + ...++..++|.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence 58999999999966655 333 246799999999999887655544443322 1 01357778884
Q ss_pred -cccCCCCEEEEecc
Q 004726 383 -SEFKDVDMVIEAVI 396 (733)
Q Consensus 383 -~~l~~aDlVI~avp 396 (733)
+++++||+||+++-
T Consensus 70 ~eal~dADfVv~ti~ 84 (431)
T PRK15076 70 REALQGADYVINAIQ 84 (431)
T ss_pred HHHhCCCCEEeEeee
Confidence 88999999999983
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=75.43 Aligned_cols=151 Identities=12% Similarity=0.019 Sum_probs=103.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c-ccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-~l~ 386 (733)
.+|||||.|.||.=+|..+.++|+.|.+.||++ -+.+.+.+ +.-. .+++ + +-+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y----------------------g~~~-ft~lhdlcer 107 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY----------------------GSAK-FTLLHDLCER 107 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh----------------------cccc-cccHHHHHhc
Confidence 479999999999999999999999999999987 22222211 1111 1222 1 236
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCC------C-CCee
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH------V-MPLL 456 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~------~-~~lv 456 (733)
..|+|+.|+. ..-...+++..-.. ++.++++...+|... .+...+.++..-.++..|++..|. . .|+|
T Consensus 108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV 185 (480)
T KOG2380|consen 108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV 185 (480)
T ss_pred CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence 7899999996 55555555554444 567899988777543 334445555566789999976664 1 2444
Q ss_pred EEec---CCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004726 457 EIVR---TERTSAQVILDLMTVGKIIKKVPVVV 486 (733)
Q Consensus 457 eiv~---~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (733)
-+-. .....+|..+.+.+++...|+..|.+
T Consensus 186 ydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 3321 22345899999999999999998887
|
|
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.8e-05 Score=80.46 Aligned_cols=163 Identities=21% Similarity=0.285 Sum_probs=104.2
Q ss_pred cEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 14 GVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 14 ~i~~i~l~~p-~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
.|++|.++.+ . .+.+..--.+.+.+.++.+..|+.+++|||.=. |-|+.... .....+.+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l 122 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL 122 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence 5888888655 1 122222246788888999999999999999521 11111110 11122333
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh-hh-------------------
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ-RL------------------- 150 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~-~l------------------- 150 (733)
+++..-. ||++.|++.|..||..++++||.++|+++|..|-..+..+. |...... .+
T Consensus 123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~ 199 (317)
T COG0616 123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEELLEKLGVEKEVITAGEYKDILSPF 199 (317)
T ss_pred -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHHHHHhcCCceeeeeccccccccCcc
Confidence 3344444 99999999999999999999999999999999877665542 2221110 00
Q ss_pred ---------------------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHH
Q 004726 151 ---------------------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (733)
Q Consensus 151 ---------------------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (733)
..+-.......-+.+|+.+++++|++.||||++...++....+...
T Consensus 200 ~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~ 272 (317)
T COG0616 200 RPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL 272 (317)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence 0000111123346799999999999999999998766555444443
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.6e-05 Score=82.04 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=82.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeC-ChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~-~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|||||+|.+|+.+|..+..-|.+|.+||+ .....+.. .......++ +.++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence 5899999999999999999999999999999 33322210 112223344 5689
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccCCC-CcEEEEecCC--------CCCCCC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSSQ-DRIIGAHFFS--------PAHVMP 454 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~~-~~~ig~h~~~--------p~~~~~ 454 (733)
.||+|+..+|...+.+.-+=++....+++++++ .|++- +.-..+.+.+... -+-.++..|. |.+..+
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gail-IN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~p 275 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAIL-INAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLP 275 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEE-EECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCC
Confidence 999999999988886555556677788999976 47763 3334455544322 2323444332 233445
Q ss_pred eeEEecC
Q 004726 455 LLEIVRT 461 (733)
Q Consensus 455 lveiv~~ 461 (733)
.|.++|+
T Consensus 276 nV~~TPH 282 (324)
T COG0111 276 NVILTPH 282 (324)
T ss_pred CeEECCc
Confidence 5666664
|
|
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.4e-05 Score=78.98 Aligned_cols=160 Identities=18% Similarity=0.250 Sum_probs=99.1
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 12 ~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
.+.|++|.++.+ ..+. ...+.+++...++.+..+ .+|||.=.. .|+..... ......+
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~s-------------~~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHGY-------------GLAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhHH-------------HHHHHHH
Confidence 357999999876 2221 123456666666555433 467775321 12211110 0011123
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh----------------------
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ---------------------- 148 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~---------------------- 148 (733)
.++....||+++.+.+.|..||..++++||.++|.+.+.+|...+-.. .|......
T Consensus 148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 357778999999999999999999999999999999999887666322 12211100
Q ss_pred ---------hhcc-----------cc--CH-HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHH
Q 004726 149 ---------RLPR-----------LV--GL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 194 (733)
Q Consensus 149 ---------~l~r-----------~~--G~-~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~ 194 (733)
.+.. .| ++ ....+-+.+|+.+++++|++.||||++...+++...+.
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 0000 00 00 11223456899999999999999999998777755443
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00082 Score=71.43 Aligned_cols=166 Identities=14% Similarity=0.087 Sum_probs=97.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||+|+|+|.||+-++..|+++|++|+++-|++. +++..+ +|..-.............+.+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence 3799999999999999999999988888888775 444322 2211000000000112223334667799
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH-HhcccCCCCcEEEEecCCCCCCCCeeE-------Eec
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLE-------IVR 460 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~~~ig~h~~~p~~~~~lve-------iv~ 460 (733)
|+||.++- .-...++++.+.+.++++++|++.-.++...+ +.+......-+.|+-+.......+..- +.-
T Consensus 69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 99999985 55566888999999999987776566655544 444433332233443332222222111 111
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 461 T--ERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 461 ~--~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
+ ....++.++.+.+.++..|-...+..|
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 1 111336677777777666655554433
|
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00019 Score=73.54 Aligned_cols=138 Identities=16% Similarity=0.126 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-+++++-.+.....++.+.+. .+-+|-|.-.++++. |.+-+ .........+.+ ..+....+|+|++|
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE----------~~G~~~~ia~~~-~~~s~~~VP~IsVI 143 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE----------ERGQGEAIARNL-MEMSDLKVPIIAII 143 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH----------hccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 567788888888888888754 456666654333332 33211 011122233444 45778899999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.|.|||......||++++.+++.++. +-|.++.+..+...--...+.+.+ .+++.++++.|+||+|+|
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIP 213 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecC
Confidence 9999999888888999999999988874 223333333333221112223333 779999999999999996
Q ss_pred c
Q 004726 186 S 186 (733)
Q Consensus 186 ~ 186 (733)
+
T Consensus 214 e 214 (256)
T PRK12319 214 E 214 (256)
T ss_pred C
Confidence 4
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.8e-05 Score=87.76 Aligned_cols=130 Identities=16% Similarity=0.081 Sum_probs=82.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||+.... +... +.| +...+++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 58999999999999999999999999999985321 1110 001 2222334 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEEecC--CC-----CCCCCeeE
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF--SP-----AHVMPLLE 457 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~~~ig~h~~--~p-----~~~~~lve 457 (733)
||+|+.++|...+.+.-+=++..+.++++++++..+-+ +.-..+.+.+.. .-...++..| .| .+..+-|.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 273 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI 273 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence 99999999987776555545666788999987643333 333455554432 2233444433 22 23335566
Q ss_pred EecCCC
Q 004726 458 IVRTER 463 (733)
Q Consensus 458 iv~~~~ 463 (733)
++|+-.
T Consensus 274 ~TPHia 279 (525)
T TIGR01327 274 ATPHLG 279 (525)
T ss_pred ECCCcc
Confidence 666533
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.1e-05 Score=82.42 Aligned_cols=98 Identities=23% Similarity=0.276 Sum_probs=66.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.||+|||+|.+|.++|..++..|. +++++|++++.++.....+.... ... ....+..+.++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence 489999999999999999999886 79999999876554332222110 000 001455567888899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEE
Q 004726 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 387 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii 419 (733)
+||+||.+.-. +..+.+++.+++.++.+.+.++
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 99999997621 2334556666788886555443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.5e-05 Score=83.29 Aligned_cols=97 Identities=24% Similarity=0.332 Sum_probs=66.7
Q ss_pred eEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.+|.++|..|+..| .+|+++|+++++++.....+. ....... .....+++++++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~-------~~~~~~~-------~~~i~~~d~~~l~~ 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLA-------HGTPFVK-------PVRIYAGDYADCKG 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHH-------ccccccC-------CeEEeeCCHHHhCC
Confidence 7999999999999999999999 589999999887653221111 1000000 01122456788999
Q ss_pred CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 388 aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
||+||.+++. +..+.+++.+++.++.+.+.+++
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv 114 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLV 114 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 9999999964 34456667777888776655443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.5e-05 Score=71.70 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=70.2
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccc---cCc-ccc
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGV---LDY-SEF 385 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~---~~~-~~l 385 (733)
|+|+|+|.||.-+|..|+++|++|+++++++ .++...+ .|. ++... ....+... .+. +..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~~---~~~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGPD---GDETVQPPIVISAPSADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEETT---EEEEEEEEEEESSHGHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEecc---cceecccccccCcchhcc
Confidence 7899999999999999999999999999998 6555321 110 00000 00001111 111 246
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhccc
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKT 435 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~ 435 (733)
..+|+||.|+. ......+++.+.+++.+++.|++.-.++... .+.+..
T Consensus 66 ~~~D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 66 GPYDLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp STESEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred CCCcEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 78999999996 4344567888999999997777666666644 444444
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00056 Score=73.37 Aligned_cols=138 Identities=16% Similarity=0.099 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
.+++++-.+.....++.++.. .+-+|-|.-.++++ .|.+-++. .......+.+ ..+..+.+|+|++|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe~----------Gqa~aIAr~l-~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEEL----------GQGEAIAFNL-REMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHHH----------hHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 468899999999988888765 45566664333333 33332221 0112222344 45788999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.+.+||.....+||++++.+++.++. +-|.++++..+...--...|.+ .-.++|.++++.|+||+|+|
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEecc
Confidence 9999666655555789999999988764 2245555555544322233333 33899999999999999996
Q ss_pred c
Q 004726 186 S 186 (733)
Q Consensus 186 ~ 186 (733)
+
T Consensus 337 E 337 (431)
T PLN03230 337 E 337 (431)
T ss_pred C
Confidence 3
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.3e-05 Score=78.28 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=69.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+..-|.+|+.||++........ . .... ..++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~-------------~~~~-~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------E-------------FGVE-YVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------H-------------TTEE-ESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------c-------------ccce-eeehhhhcch
Confidence 5899999999999999999999999999999987644110 0 0111 2234 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 436 (733)
||+|+.++|-..+...-+=++..+.++++++++ |++ + +.-..+.+.+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV-NVARGELVDEDALLDALE 142 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEE-eccchhhhhhhHHHHHHh
Confidence 999999999766654444456677889999886 454 3 33345555543
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.9e-05 Score=85.22 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=82.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|..+...|++|++||++... +.. ...+ +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-----------AQLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEE-cHHHHHhh
Confidence 58999999999999999999999999999986432 111 0011 1222 33 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEEecC--CC-----CCCCCeeE
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF--SP-----AHVMPLLE 457 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~~~ig~h~~--~p-----~~~~~lve 457 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+-+ +.-..+.+.+.. .-.-.++..| .| .+..+-|.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 274 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV 274 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence 99999999987776665546777888999988643333 333355454432 2233344433 22 23335566
Q ss_pred EecCCC
Q 004726 458 IVRTER 463 (733)
Q Consensus 458 iv~~~~ 463 (733)
++|+-.
T Consensus 275 lTPHia 280 (526)
T PRK13581 275 VTPHLG 280 (526)
T ss_pred EcCccc
Confidence 677543
|
|
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00014 Score=71.85 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.+++.+...+...|..++..+..+.|.| .+-| +++. ....++ +.|...+.||++.
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------ag~aI~-d~i~~~~~~V~t~ 87 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEG------GDID----------------AGFAIF-NMIRFVKPKVFTI 87 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHhCCCCEEEE
Confidence 4778889999999988876333344444 3333 3322 122455 6678899999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhh------------------hhccccC--HHHHHHH
Q 004726 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEM 162 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~------------------~l~r~~G--~~~a~~l 162 (733)
+.|.|.+.|.-++++||- |++.++++|.+-...-++. |.+. .+...-| .....++
T Consensus 88 v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~---G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~ 164 (197)
T PRK14512 88 GVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK---GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKD 164 (197)
T ss_pred EEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHh
Confidence 999999999999999985 9999999987654432221 1111 0111112 2445556
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCc-chH
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTS-EEL 189 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~-~~l 189 (733)
+-....++|+||+++||||+|++. +++
T Consensus 165 ~~~d~~lta~EA~~yGliD~I~~~~~~l 192 (197)
T PRK14512 165 TDRDFWLDSSSAVKYGLVFEVVETRLEL 192 (197)
T ss_pred hhcCcccCHHHHHHcCCccEeecCcHHh
Confidence 667788999999999999999964 444
|
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00044 Score=72.45 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-.++++-.+.....++.++.. .+-+|-|--.+++++ |.+-.+. .......+.+ ..+....+|+|++|
T Consensus 133 G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~----------G~~~aiar~l-~~~a~~~VP~IsVV 199 (322)
T CHL00198 133 GMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKL----------GQGEAIAVNL-REMFSFEVPIICTI 199 (322)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHH----------hHHHHHHHHH-HHHHcCCCCEEEEE
Confidence 567788999999988888765 455666643333443 3322111 0112222333 34678999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.|.|||.-....||++++.+++.|+. +-|.++++.++.. ..+|.+ +...-+++|++.+++|+||+|+|
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence 9999888865555699999999998874 2345555544443 234443 33456899999999999999996
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.8e-05 Score=80.78 Aligned_cols=96 Identities=24% Similarity=0.338 Sum_probs=67.3
Q ss_pred EEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 311 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
|+|||+|.+|+++|..++..| .+++++|++++.++.....+....... . ...+..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999988765444333221110 0 0134434567899999
Q ss_pred CEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 389 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
|+||.++.- +..+.+++..++.+++ ++++++
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999999842 3445666777788888 444443
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.9e-05 Score=81.88 Aligned_cols=96 Identities=27% Similarity=0.369 Sum_probs=66.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHh--hccccccCccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~ 384 (733)
+||+|||+|.+|+++|..++..|. +++++|++++.++...-.+.... ..+ ..+..+.++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~---------------~~~~~~~i~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA---------------AFLPRTKILASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh---------------hcCCCCEEEeCCCHHH
Confidence 599999999999999999998886 79999999877654333222111 011 13433457788
Q ss_pred cCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEE
Q 004726 385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 385 l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii 419 (733)
+++||+||.+.-. +..+.+++..++.++++...++
T Consensus 103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi 151 (350)
T PLN02602 103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151 (350)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999999998621 3345556667788776655433
|
|
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00033 Score=69.29 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=96.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
..++.++..++...+-.++.++..+-|.+ .+.|+ |+. ....++ +.+...+.||..
T Consensus 37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG------~v~----------------~g~aIy-d~m~~~~~~V~T 93 (200)
T CHL00028 37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGG------SVI----------------SGLAIY-DTMQFVKPDVHT 93 (200)
T ss_pred CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCc------chh----------------hHHHHH-HHHHhcCCCEEE
Confidence 34899999999999999875544344433 34432 221 122555 668889999999
Q ss_pred EeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhh-h-----------------hhccccC--HHHHHH
Q 004726 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRLVG--LSKAIE 161 (733)
Q Consensus 104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~-~-----------------~l~r~~G--~~~a~~ 161 (733)
.+-|.|.+.|.-|++++| .|++.++++|.+-...-|.. .|-+ . .+...-| .....+
T Consensus 94 v~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~ 171 (200)
T CHL00028 94 ICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE 171 (200)
T ss_pred EEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999999 69999999998877654421 2211 1 1111222 234456
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
++-....++|+||+++||||+|+.+
T Consensus 172 ~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 172 DMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HhhcCccCCHHHHHHcCCCcEEeec
Confidence 6677788999999999999999854
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.6e-05 Score=80.67 Aligned_cols=97 Identities=24% Similarity=0.273 Sum_probs=66.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|..+|..++..|. +++++|++++.++...-.+....... .. -.+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~--~~-----------~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT--SP-----------TKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc--CC-----------eEEE-eCCHHHhC
Confidence 489999999999999999999998 89999999887665433332221000 00 1232 45678899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 387 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+||+||.+.-. +..+.+++..++.++.+. ++++
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~-~~vi 119 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFD-GIFL 119 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence 99999987731 344556666677777654 4443
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=72.63 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=112.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC----eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
+|++||+|.|..+++..+.++|. +++.+-.+......- .... +.-.+.++.+.+
T Consensus 2 ~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~~------------g~~~~~~n~~~~ 59 (267)
T KOG3124|consen 2 KVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEAL------------GVKTVFTNLEVL 59 (267)
T ss_pred ceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhcC------------CceeeechHHHH
Confidence 68999999999999999999986 444444422221110 0111 222233345778
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-cCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERT 464 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~~~~t 464 (733)
+.+|++++++- +.+...++.++...+..+.|++|..-+.+++.+...+..+.|++...++.|..+.....+. .+...
T Consensus 60 ~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~ 137 (267)
T KOG3124|consen 60 QASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHA 137 (267)
T ss_pred hhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCc
Confidence 89999999995 7888888888777677788999999999999999888877899999999999888777744 57777
Q ss_pred CHHHHHHHHHHHHHcCCe
Q 004726 465 SAQVILDLMTVGKIIKKV 482 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~ 482 (733)
..+..+.+.+++...|..
T Consensus 138 ~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 138 TNEDLELVEELLSAVGLC 155 (267)
T ss_pred chhhHHHHHHHHHhcCcc
Confidence 778789999999999953
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.6e-05 Score=75.53 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=93.8
Q ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 17 IITLINPPVNALAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 17 ~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
+|.|+.| ++.++...+.+.|..+++++..+- |.|.+. |+|+.. ...++ +.|
T Consensus 18 ~i~l~g~----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~----------------g~~i~-~~i 70 (182)
T PF00574_consen 18 IIFLNGP----IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA----------------GLAIY-DAI 70 (182)
T ss_dssp EEEEESS----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH----------------HHHHH-HHH
T ss_pred EEEECCc----cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH----------------HHHHH-HHH
Confidence 3455555 889999999998888853332222 223443 333321 22555 678
Q ss_pred hcCCCcEEEEeCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhh---------------hhhccc--cC
Q 004726 95 EDCKKPIVAAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRL--VG 155 (733)
Q Consensus 95 ~~~~kp~Iaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~---------------~~l~r~--~G 155 (733)
..++.|+++.+.|.|.+.|.-++++|+. |++.+++.|.+-+...+......-. ..+... ..
T Consensus 71 ~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~ 150 (182)
T PF00574_consen 71 RSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLS 150 (182)
T ss_dssp HHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8899999999999999999999999999 8999999999988865542201110 011111 12
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
.....+++-....++|+||+++|+||+|+.
T Consensus 151 ~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 151 KEEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 344445566677889999999999999975
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=78.27 Aligned_cols=125 Identities=13% Similarity=0.098 Sum_probs=76.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|.+|++||++........ +. ..... ............++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------~~--~~~~~-----~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------LL--IPNGD-----VDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------hc--ccccc-----ccccccccCcccCHHHHHhh
Confidence 5899999999999999999999999999999743211100 00 00000 00000000011233 66899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~~~ig~h~~ 447 (733)
||+|+.++|-..+...-+-++..+.++++++|+ |++ + +.-..+.+.+.. .-...++..|
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI-NvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV-NIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 999999999887765555566777889999886 454 3 333455555432 2233444443
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=6e-05 Score=78.62 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.4
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||.| .||.+||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 589999996 9999999999999999999987643221 34578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.|++....+...+ +++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998654443332 78999887644
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=69.03 Aligned_cols=138 Identities=18% Similarity=0.126 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-+++++-.+.....++.++.- .+-+|-|.-.+++++ |.+-++ ........+.+ ..+....+|+|++|
T Consensus 130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~----------~G~~~aia~~l-~~~a~~~VP~IsVI 196 (319)
T PRK05724 130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE----------RGQSEAIARNL-REMARLKVPIICTV 196 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 567888888888888888754 466666654444333 432221 01122233444 45788999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.|.|||......||++++.+++.|+ .++.-|.+..|-+- ..++.+..- ...+++.++++.|+||+|+|
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence 999988877555569999999998876 33333444433332 233444333 56689999999999999996
Q ss_pred c
Q 004726 186 S 186 (733)
Q Consensus 186 ~ 186 (733)
+
T Consensus 267 E 267 (319)
T PRK05724 267 E 267 (319)
T ss_pred C
Confidence 3
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0016 Score=68.34 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-+++++-.+.....++.++.- .+-+|-|.-.+++++ |.+-++.. ......+.+ ..+....+|+|++|
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~G----------~~~aia~~l-~a~s~~~VP~IsVV 196 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEERG----------QSEAIARNL-REMARLGVPVICTV 196 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHHH----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence 567788888888888888754 456666643333333 33322111 112222344 45778999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.|.|||......||++++.+++.++. +-|.++.+..+.. ..++.+..- -..++|.++++.|+||.|+|
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd---~~~a~~aae-~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKD---ASKAPKAAE-AMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccc---hhhHHHHHH-HccCCHHHHHHCCCCeEecc
Confidence 9999888775555799999999988773 2244444443333 122332222 36778999999999999996
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00042 Score=68.30 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.++..+...+...+..++.++..+-|++ .+. |+|+. ....++ +.|...+.|+...
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp------GG~v~----------------~g~~I~-d~l~~~~~~v~t~ 90 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSP------GGSIT----------------AGLAIY-DTMQFIKPDVSTI 90 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEECC------CCCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence 3677888888888888886554444444 333 33321 122455 5577777788888
Q ss_pred eCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhh---------------hhhccccC--HHHHHHHHHc
Q 004726 105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLL 165 (733)
Q Consensus 105 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~---------------~~l~r~~G--~~~a~~l~lt 165 (733)
+-|.|.+.|.-+++++| .|++.++++|.+-+..-|......-. ..+.+.-| .....+++-.
T Consensus 91 ~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~ 170 (191)
T TIGR00493 91 CIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER 170 (191)
T ss_pred EEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence 88999999998888665 69999999999866543321110000 01222223 3555667778
Q ss_pred CCCCCHHHHHHcCCccEEcC
Q 004726 166 SKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~ 185 (733)
+..++|+||+++||||+|+.
T Consensus 171 ~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 171 DFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CccCcHHHHHHcCCccEEec
Confidence 89999999999999999974
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.69 E-value=8.9e-05 Score=78.98 Aligned_cols=108 Identities=23% Similarity=0.224 Sum_probs=69.4
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (733)
+||+|||+ |..|..+|..++..|+ +|+++|+++ +.++.....+. +.+...+. ..++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence 38999998 9999999999999987 499999965 33332211111 11111110 01355566778
Q ss_pred ccCCCCEEEEecc--C----C-h-------HHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 384 EFKDVDMVIEAVI--E----S-V-------PLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 384 ~l~~aDlVI~avp--e----~-~-------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
++++||+||.++. . + . ++.+++...+.+.++ +.+++..++..++.
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~ 127 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVM 127 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHH
Confidence 8999999999994 1 1 1 445566667777775 55565566665543
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00026 Score=75.42 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=75.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||.|.+|..+|+.+..-|.+|..||+.....+ .+ .. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 5899999999999999999989999999998632100 00 11 1133 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~~~ig~h~~ 447 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |++ + +.-..+.+.+.. +-. .++..|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999877765555566777889999885 555 2 334455555543 233 555554
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.002 Score=73.44 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-+++++-++-....++.++.. .+-+|-|--.+++++ |.+.++.. ......+.+ ..+....+|+|++|
T Consensus 221 G~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~G----------q~~aIArnl-~amasl~VP~ISVV 287 (762)
T PLN03229 221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNL-RTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHHh----------HHHHHHHHH-HHHhCCCCCEEEEE
Confidence 567788888888888888754 455666643333333 33322210 112233444 45778999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.|.|||......||+++|.+++.++. +-|.++++..+... .+|.+ +...-.++|++.+++|+||.|+|
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~---~~A~e-AAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSA---KAAPK-AAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCc---ccHHH-HHHHcCCCHHHHHhCCCCeeecc
Confidence 9999888887777899999999987663 23555554444432 22322 33456899999999999999997
Q ss_pred c
Q 004726 186 S 186 (733)
Q Consensus 186 ~ 186 (733)
.
T Consensus 358 E 358 (762)
T PLN03229 358 E 358 (762)
T ss_pred C
Confidence 3
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00012 Score=77.08 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=60.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|..|...|.+|+++++++++.+.+. +.|. . .+. ..++ +.+++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 5899999999999999999999999999999987654431 1110 0 000 1122 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+|+||.++|...- -.+..+.+++++++++.+|
T Consensus 210 aDiVint~P~~ii-----~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-----TADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-----CHHHHhcCCCCeEEEEeCc
Confidence 9999999984311 1233445677777765443
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=68.74 Aligned_cols=98 Identities=22% Similarity=0.273 Sum_probs=61.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+++.|+|.|..|+++|+.|...|.+|+++|+||-++-++. ++.....+-.++++.+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~------------------------~dGf~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA------------------------MDGFEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH------------------------HTT-EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh------------------------hcCcEecCHHHHHhhC
Confidence 4799999999999999999999999999999997654431 1223323222678999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcc
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEK 434 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~ 434 (733)
|++|.+.....-+..+.|+ .+++++|+++.++. +.+..+.+.
T Consensus 80 di~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHFR----QMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CEEEECCCCccccCHHHHH----HhcCCeEEeccCcCceeEeecccccc
Confidence 9999988654433444444 47899999765553 344444443
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0012 Score=66.83 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.+.++.+..+++.++++....+..+- ++|.. -|+++.. ..++. +.+.+.+.|+++.
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~Id-Lii~T------pGG~v~A----------------A~~I~-~~l~~~~~~v~v~ 124 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPID-LIIHT------PGGLVDA----------------AEQIA-RALREHPAKVTVI 124 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCceE-EEEEC------CCCcHHH----------------HHHHH-HHHHhCCCCEEEE
Confidence 46788888999999998887765553 33332 2333221 11344 5678899999999
Q ss_pred eCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhh
Q 004726 105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGG 146 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~ 146 (733)
|+..|+.+|.-++|+||-+++.+.+.+|--...+|-.|..+.
T Consensus 125 VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si 166 (285)
T PF01972_consen 125 VPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI 166 (285)
T ss_pred ECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence 999999999999999999999999999999999998886543
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.6e-05 Score=76.85 Aligned_cols=116 Identities=18% Similarity=0.155 Sum_probs=78.8
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHC--CC-----eeEEEeCChHHHHHHHHHHHHHHHHhHhcC-CCCHHHHHHHhhcccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLKG 378 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~~~i~~ 378 (733)
.-.||+|||.|+||++||+.+..+ ++ +|..|-..++.-.+ .+.+.+.+....+.- .+.. -.....+..
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg---~~lP~NvvA 95 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG---IKLPENVVA 95 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC---ccCCCCeEe
Confidence 346899999999999999998865 22 67777665544332 111111111111111 1110 112235667
Q ss_pred ccCc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH
Q 004726 379 VLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 379 ~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
++|+ +++.+||++|.++| .+....++++|..++++++..+|.+.++..
T Consensus 96 v~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred cchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 7787 78899999999999 888899999999999999988887776654
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00026 Score=78.33 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=70.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||+|.+|..+|+.+..-|.+|+.||+.+.... .......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~----------------------------~~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL----------------------------GNARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc----------------------------CCceecCCHHHHHhh
Confidence 5899999999999999999999999999998642100 011122234 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 436 (733)
||+|+.++|-..+.+.-+=++....++++++++ |++. +.-..+.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 999999999877765555466777889999875 5552 33345544443
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00018 Score=76.41 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=62.6
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.+|.++|..++..|. +++++|++++.++.-...+.....-. ... --.+. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~-~~~----------~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT-YST----------NTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC-CCC----------CEEEE-ECCHHHhCC
Confidence 69999999999999999999886 79999999877654322221110000 000 00233 456799999
Q ss_pred CCEEEEeccC------C----------hHHHHHHHHHHHHhCCCCeEEE
Q 004726 388 VDMVIEAVIE------S----------VPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 388 aDlVI~avpe------~----------~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
||+||.+.-. + ..+.+++..++.++.+ +.+++
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~i 116 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVII 116 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 9999998731 1 2244445556666664 45444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00019 Score=75.33 Aligned_cols=99 Identities=25% Similarity=0.339 Sum_probs=65.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|+++|..|+..+. +++++|++++.++--.-.+..... ....-..+..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~------------~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA------------PLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch------------hccCceEEecCCChhhhc
Confidence 489999999999999999987764 899999996654432111111000 000001233324478999
Q ss_pred CCCEEEEec--c------------CChHHHHHHHHHHHHhCCCCeEEE
Q 004726 387 DVDMVIEAV--I------------ESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 387 ~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
++|+||.+. | .+..+.+++-+++.+.++ +.++.
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivl 115 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVL 115 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEE
Confidence 999999988 3 255577777778888877 44443
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00046 Score=73.89 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=70.7
Q ss_pred ceEEEEcCCcCcHHHHHHHH-HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|||||.|.||..+|+.+. .-|.+|..||+........ .. .+... ++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~-------------~~~~~-~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RF-------------NARYC-DLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hc-------------CcEec-CHHHHHH
Confidence 58999999999999999987 6789999999864221100 00 11122 33 5679
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS 436 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 436 (733)
+||+|+.++|-..+.+.-+=++..+.++++++++ |++- +.-..+.+.+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999888766555566777889999875 5652 33445555554
|
|
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=97.54 E-value=9.6e-05 Score=70.37 Aligned_cols=102 Identities=27% Similarity=0.354 Sum_probs=65.5
Q ss_pred HhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCcccc------------CCC---------CCChh-----hh
Q 004726 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGV---------IPGFG-----GT 147 (733)
Q Consensus 94 i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl---------~P~~g-----~~ 147 (733)
.....|||+|.++|.|..++.-|+.+||-+++.+.+.++...+. +|+ .-..+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35689999999999999999999999999999999998876663 332 11111 00
Q ss_pred ----hhh-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHH
Q 004726 148 ----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (733)
Q Consensus 148 ----~~l-----------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (733)
..+ .|-+... ..+-+..|..+++++|++.||||++-..+++...+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 000 0111111 11225789999999999999999999877777665543
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00016 Score=77.26 Aligned_cols=102 Identities=15% Similarity=0.077 Sum_probs=65.8
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCChH--HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccc
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 377 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 377 (733)
..||+|||+ |.+|.++|..+...|. +++++|++++ +++.-.-.+..... .......
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 358999998 9999999999988765 7999999653 23221111111100 0001112
Q ss_pred c-ccCccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 378 G-VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 378 ~-~~~~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
. +.+++++++||+||.+.- .+..+.+++..+|.++.+++++++..|
T Consensus 70 i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 70 ITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 2 456689999999998772 133456667777888887777765544
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00047 Score=72.03 Aligned_cols=79 Identities=23% Similarity=0.194 Sum_probs=53.3
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHC--CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
+..||||||+|.||..++..+.+. +++|+ ++|+++++.+...+. ++.....+++
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------------------~g~~~~~~~~e 62 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------------------LRRPPPVVPLD 62 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------------------cCCCcccCCHH
Confidence 346899999999999999999874 78876 889998876543211 1111223334
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHH
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSEL 409 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l 409 (733)
+.+.++|+|++|+|.+. ..++..+.
T Consensus 63 ell~~~D~Vvi~tp~~~--h~e~~~~a 87 (271)
T PRK13302 63 QLATHADIVVEAAPASV--LRAIVEPV 87 (271)
T ss_pred HHhcCCCEEEECCCcHH--HHHHHHHH
Confidence 44578999999999443 34444443
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00077 Score=67.09 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=35.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|+|+|+|.||..+|+.|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 479999999999999999999999999999998876654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00077 Score=71.97 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=74.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+..-|.+|+.||+.... . ...+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CREG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------cccc----------------cCCHHHHHHh
Confidence 58999999999999999999889999999975321 0 0000 1123 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~~~ig~h~~ 447 (733)
||+|+.++|-..+...-+=++..+.++++++++ |++ + +.-..+.+.+.. .-.-.++..|
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 999999999877765555566777889999885 555 2 344455555542 2233445443
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00011 Score=80.03 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=70.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||+|.||+.+|+.+...|++|++||+.....+ + ... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence 5799999999999999999999999999998543210 0 011 1223 55789
Q ss_pred CCEEEEeccCChH---HHHHHH-HHHHHhCCCCeEEEecCCC---CCHHHHhcccC-CCCcEEEEecC
Q 004726 388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTST---IDLNIVGEKTS-SQDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~---~k~~v~-~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~-~~~~~ig~h~~ 447 (733)
||+|+.++|-..+ ....++ ++....++++++++ |+|. +....+.+.+. ......++.-|
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 9999999996542 223344 44666789999875 5553 33334444443 22333445444
|
|
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0048 Score=64.54 Aligned_cols=161 Identities=14% Similarity=0.158 Sum_probs=102.2
Q ss_pred CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 13 ~~i~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
+.-..|.-|++. .-+++....+.+..+++.+... .+-+|.|...|+ +-+.+- . .....+.+ ....+
T Consensus 120 G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqEg--i---~sL~~~ak-~~~a~ 187 (292)
T PRK05654 120 GMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQEG--L---LSLMQMAK-TSAAL 187 (292)
T ss_pred CEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhhh--h---hHHHhHHH-HHHHH
Confidence 333445556663 5899999999999999998765 467777765443 222110 0 00001111 11222
Q ss_pred HHHHhcCCCcEEEEeCCcccchhh-HHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCC
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i 169 (733)
.++.....|.|+++.|+|.||+. ..++.+|+++|.+++.+++-..+ .+...+|. ++ .-+.-
T Consensus 188 -~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e----~l--pe~~~ 249 (292)
T PRK05654 188 -KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE----KL--PEGFQ 249 (292)
T ss_pred -HHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh----hh--hhhhc
Confidence 23556789999999999999965 45778999999999888763221 11111111 00 11123
Q ss_pred CHHHHHHcCCccEEcCcchHHHHHHHHHHHHHcc
Q 004726 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (733)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~ 203 (733)
+++-+.+.|+||.|+++.++.....++.+.+...
T Consensus 250 ~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~ 283 (292)
T PRK05654 250 RAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQ 283 (292)
T ss_pred CHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcC
Confidence 6777889999999999999988887777765443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00058 Score=73.03 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=70.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+..-|.+|+.||+..... . .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------------------~~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------------------PD-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------------------cc-ccCHHHHHHh
Confidence 589999999999999999998999999999863210 0 00 0123 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 436 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |++ + +.-..+.+.+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999888766555567777889999885 565 3 33345555543
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0005 Score=71.65 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=56.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCe-eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.||+|||+|.||..++..+.+. +++ +.++|+++++.+...+. . .....+++ +.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~-------------~~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------T-------------GAKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------c-------------CCeeECCHHHH
Confidence 4899999999999999999876 455 55899998876653220 0 11223444 34
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEE
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii 419 (733)
+.++|+|++|+| .+...++..++.+. ..+.++
T Consensus 59 l~~~DvVvi~a~--~~~~~~~~~~al~~-Gk~Vvv 90 (265)
T PRK13304 59 VEDVDLVVECAS--VNAVEEVVPKSLEN-GKDVII 90 (265)
T ss_pred hcCCCEEEEcCC--hHHHHHHHHHHHHc-CCCEEE
Confidence 588999999998 55545555554432 344444
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00033 Score=79.77 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=58.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHH-HHHHHHHHHHH
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN-YVYTSLKKWSQ 688 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d-~~~~~~~~~~~ 688 (733)
..++++.||++.++++||+.++++|++ ++++||.++..|+|++...-|||+.+|..|.+ .+.+.++++..
T Consensus 182 ~~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~ 252 (495)
T PRK07531 182 EIDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGP 252 (495)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhch
Confidence 357899999999999999999999999 89999999999998764445999999999854 45555555433
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00048 Score=72.88 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=62.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||.|||.|.+|..++..|...|.+|+++|+++++.+.+.+ .|. + .+. ..++ +.+++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~-~---------~~~-~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGL-S---------PFH-LSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-e---------eec-HHHHHHHhCC
Confidence 58999999999999999999999999999999876544311 110 0 000 1122 45788
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
+|+||.++|... +-++..+.++++++|++.++.
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 999999998321 223444567788888765554
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0019 Score=64.57 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEE--EEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAI--VLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~v--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
..++..+...+...|..++..++-+-| .|.+-|+...+ ...++ +.+...+-||..
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~a----------------------GlaIy-d~m~~~~~~V~t 117 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYA----------------------GLGIY-DTMQFISSDVAT 117 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhh----------------------HHHHH-HHHHhcCCCEEE
Confidence 357788888888877766643222222 22343332211 22455 668888999999
Q ss_pred EeCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhh------------------hhccccC--HHHHHH
Q 004726 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIE 161 (733)
Q Consensus 104 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~------------------~l~r~~G--~~~a~~ 161 (733)
.+-|.|.+.|.-|++++|. |++.+++++.+-...-|.. |-+. .+.+.-| .....+
T Consensus 118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~---G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~ 194 (221)
T PRK14514 118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ---GQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWA 194 (221)
T ss_pred EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999996 9999999998766543321 2111 0112223 244455
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
++-....++|+||++.||||+|+..
T Consensus 195 ~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 195 DSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HhhcCccCCHHHHHHcCCccEEeec
Confidence 6677888999999999999999853
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00026 Score=75.62 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=66.5
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 378 (733)
-||+|||+ |.+|.++|..|+..|. +++++|+++ +.++.-.-.+..... ........
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAF--------------PLLAGVVA 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccc--------------cccCCcEE
Confidence 38999998 9999999999998885 899999965 323321111111000 00011112
Q ss_pred -ccCccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 379 -VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 379 -~~~~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
+.+++++++||+||.+.- .+..+.+++..++.++++++++++..|
T Consensus 70 ~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 70 TTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred ecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 456789999999998772 134566777778888887677766544
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0047 Score=64.27 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=122.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc----c
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~ 383 (733)
...|+.||++.||..++.+.+.+|+.|.+|+|...+++..+.+-. +| ..|....++ .
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v~ 66 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFVS 66 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHHH
Confidence 357999999999999999999999999999999999887654211 11 012222222 2
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-CCCHH--HHhcccCCCCcEEEEecC---CCCCCCCeeE
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TIDLN--IVGEKTSSQDRIIGAHFF---SPAHVMPLLE 457 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~~~~~--~l~~~~~~~~~~ig~h~~---~p~~~~~lve 457 (733)
-++.--.||..|..... ...++++|.+++.++.||++... .++-+ ...+.....--|+|+-.- ..+..+| .
T Consensus 67 klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--S 143 (487)
T KOG2653|consen 67 KLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--S 143 (487)
T ss_pred hcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--c
Confidence 34566677777643322 45677899999999888876443 23322 111222233346665542 1112222 1
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcC-CCCcch----hhhh---HHHHHHHHHHHHc--CCCHHHHHH
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRIDS 520 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~-------~v~v~d-~pGfi~----nRl~---~~~~~Ea~~l~~~--Gv~~~dID~ 520 (733)
++||. ++++-..++++++.+... ..++++ ..|-.+ |-+= +.++.|+..++.. |++-.+|..
T Consensus 144 lMpGg--~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~ 221 (487)
T KOG2653|consen 144 LMPGG--SKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE 221 (487)
T ss_pred cCCCC--ChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 34553 788888888888766322 245554 334333 5442 4678899999987 579999988
Q ss_pred HHHhcC
Q 004726 521 AIRSFG 526 (733)
Q Consensus 521 a~~~~G 526 (733)
++..|.
T Consensus 222 vF~~WN 227 (487)
T KOG2653|consen 222 VFDDWN 227 (487)
T ss_pred HHHhhc
Confidence 885553
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=66.90 Aligned_cols=198 Identities=19% Similarity=0.234 Sum_probs=115.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHH----HHHHHHHhHhcCCCCHHHHHHHhhccccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~----i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (733)
|.||+-||+|.+|++-...++.. ..+|+++|.+..++..=... .+..|++.+++ ..-..+-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 46899999999999887766644 46899999999876542110 01122222221 11134667777
Q ss_pred c-cccCCCCEEEEecc-------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHH---hcccCCCCcEEEE
Q 004726 382 Y-SEFKDVDMVIEAVI-------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV---GEKTSSQDRIIGA 444 (733)
Q Consensus 382 ~-~~l~~aDlVI~avp-------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l---~~~~~~~~~~ig~ 444 (733)
. .+++++|+|+.+|- .|+......-+.|......+.|++ ..|+.|+... ...+.+... |+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence 7 67899999999983 255555666666777777777764 5677776532 222222111 34
Q ss_pred ec------------------CCCCCCCCeeEEecCCCCCH--HHHHHHHHHHHHcCC-eeEEE-c----CCCCcchhhhh
Q 004726 445 HF------------------FSPAHVMPLLEIVRTERTSA--QVILDLMTVGKIIKK-VPVVV-G----NCTGFAVNRAF 498 (733)
Q Consensus 445 h~------------------~~p~~~~~lveiv~~~~t~~--e~~~~~~~l~~~lG~-~~v~v-~----d~pGfi~nRl~ 498 (733)
|| +||-.. ++.|..|.+ .+++.+..+++.+-. .-+.+ + +...+.+|-++
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrv-----ligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafl 223 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRV-----LIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFL 223 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceE-----EECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHH
Confidence 43 343332 677776643 566667777776542 22322 2 33334445443
Q ss_pred HH---HHHHHHHHHHc-CCCHHHHHHHH
Q 004726 499 FP---YSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 499 ~~---~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.. -+|....+.+. |.++.++..++
T Consensus 224 aqrissins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 224 AQRISSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred HHHHhhhHHHHHHHHhcCCCHHHHHHHh
Confidence 22 23433334444 88999988876
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00086 Score=74.08 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=69.7
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHC-------CC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccc-
Q 004726 309 RKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~- 377 (733)
-||+|||+ |.+|.++|..|+.. |+ +++++|++++.++.-.-.+...... .+..+.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~--------------~~~~v~i 166 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYP--------------LLREVSI 166 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhh--------------hcCceEE
Confidence 48999999 99999999999988 65 8999999999876543333222110 111233
Q ss_pred cccCccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 378 ~~~~~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
.+.+++++++||+||.+.-- +..+.+++...|.++..++++++..+
T Consensus 167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 24567999999999988721 34456666667777556677665444
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00049 Score=73.07 Aligned_cols=96 Identities=18% Similarity=0.277 Sum_probs=63.2
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-c-cC--c
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y 382 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 382 (733)
||+|||+ |.+|+++|..|+..++ +++++|+++ ....+.+ +.+.. ....+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D---------L~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD---------LSHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch---------hhcCC--------cCceEEEecCCCchH
Confidence 6999999 9999999999998886 899999987 2111111 11111 0012332 2 23 6
Q ss_pred cccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 383 ~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+++++||+||.+.- .+..+.+++.+++.++. ++++++..|.
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsN 117 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITN 117 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecC
Confidence 89999999998872 24556667777788775 5555543333
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00047 Score=73.51 Aligned_cols=94 Identities=19% Similarity=0.294 Sum_probs=61.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccC---
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD--- 381 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 381 (733)
.||+|||+ |.+|+.+|..|+..+. +++++|+++ ....+.+ + .+.. . .-.+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~D-l--------~~~~-------~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAAD-V--------SHIN-------T-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEch-h--------hhCC-------c-CceEEEEeCCCCH
Confidence 48999999 9999999999998775 899999988 1111111 0 0000 0 002221 223
Q ss_pred ccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 382 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 382 ~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
++++++||+||.+.- .+..+.+++.+.+.++.+ +.+++.
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aiviv 133 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVNI 133 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEE
Confidence 478999999998772 355566777777887774 455443
|
|
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0023 Score=63.11 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.++.++..++...|..++.++..+-|.+ -+.|+ |+.. ...++ +.+...+.||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG------~v~~----------------g~aIy-d~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGG------SVYD----------------GLGIF-DTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc------chhh----------------HHHHH-HHHHhcCCCEEEE
Confidence 4889999999999999986543343333 34332 2211 22455 6688889999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhh------------------hhccccC--HHHHHHH
Q 004726 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEM 162 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~------------------~l~r~~G--~~~a~~l 162 (733)
+-|.|.+.|.-|++++|- |++.+++++..-...-|. .|.+. .+.+.-| .....++
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~ 166 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA---RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQED 166 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCccc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999985 889999999876654332 12110 1122223 2344556
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCc
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
+-....++|+||++.||||+|++.
T Consensus 167 ~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 167 TDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred hhcCcCCCHHHHHHcCCCcEEecc
Confidence 667788999999999999999865
|
|
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0023 Score=63.23 Aligned_cols=136 Identities=19% Similarity=0.300 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
-.++.++...+...+-.++.++.-+- |-|.+.|+ |+. .+..++ +.+...+-||..
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG------~v~----------------~GlaIy-d~m~~~~~~V~T 90 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGG------EVY----------------AGLAIY-DTMRYIKAPVST 90 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCC------chh----------------hHHHHH-HHHHhcCCCEEE
Confidence 45888888888888888875433222 22344432 221 122556 668889999999
Q ss_pred EeCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhhh------------------hccccC--HHHHHH
Q 004726 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQR------------------LPRLVG--LSKAIE 161 (733)
Q Consensus 104 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~~------------------l~r~~G--~~~a~~ 161 (733)
.+.|.|.+.|.-|++++|- |++.++|++-+....-|. .|.+.- +.+.-| ...-.+
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~---~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~ 167 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF---RGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR 167 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999995 999999999886665443 222111 122223 234445
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSE 187 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~ 187 (733)
++-....++|+||++.||||+|+++.
T Consensus 168 ~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 168 DMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HhccCcccCHHHHHHcCCCcEEeccC
Confidence 66677889999999999999998653
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00096 Score=64.84 Aligned_cols=95 Identities=21% Similarity=0.287 Sum_probs=60.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh---HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC----
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD---- 381 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~---e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~---- 381 (733)
||.|||+|.||+.++..|++.|. +++++|.+. +.+.+..- .. -+-|.-..+.....+.++....+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~--~~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FL--SQIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cH--hhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999998 599999986 33332110 00 01122222222222222211111
Q ss_pred --------c-cccCCCCEEEEeccCChHHHHHHHHHHHHh
Q 004726 382 --------Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 412 (733)
Q Consensus 382 --------~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~ 412 (733)
. +.++++|+||+| .++.+.+..+.....+.
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 1 347889999999 57888888787776655
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0085 Score=62.44 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=99.0
Q ss_pred EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004726 16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (733)
Q Consensus 16 ~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (733)
..|.-+++. .-+++....+.+..+++.+... .+-+|.|+..|+. -+.+-. .....+.. ....+ .+
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg~-----~sL~~~ak-~~~~~-~~ 188 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEAL-----LSLMQMAK-TSAAL-AK 188 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccch-----hHHHhHHH-HHHHH-HH
Confidence 334445553 4889999999999999998754 5677888655443 111100 00111111 11122 34
Q ss_pred HhcCCCcEEEEeCCcccchhh-HHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH
Q 004726 94 IEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (733)
Q Consensus 94 i~~~~kp~Iaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~ 172 (733)
+.....|.|+++.|+|.||+. ..++.+|+++|.++|.+++.... .+...+|. -+.-+.-+|+
T Consensus 189 ~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e------~lpe~~q~ae 251 (285)
T TIGR00515 189 MSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE------KLPEGFQTSE 251 (285)
T ss_pred HHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC------ccchhcCCHH
Confidence 566789999999999999965 46679999999999988873322 11111111 0111123566
Q ss_pred HHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 173 EGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 173 eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
-+.+.|+||.|+++.++.+...++...+.
T Consensus 252 ~~~~~G~vD~iv~~~~~r~~l~~~L~~~~ 280 (285)
T TIGR00515 252 FLLEHGAIDMIVHRPEMKKTLASLLAKLQ 280 (285)
T ss_pred HHHhCCCCcEEECcHHHHHHHHHHHHHHh
Confidence 68899999999999999887777766543
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00059 Score=72.96 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=59.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHH--CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.||..++..+.. ...+|++|+|++++.++..+.+.+ .|. .+....+. +++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av 187 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAV 187 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHH
Confidence 579999999999999986654 347899999999988776443211 110 12223444 568
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
++||+||.|.+... .++.. +.+++++.|...+
T Consensus 188 ~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig 219 (314)
T PRK06141 188 RQADIISCATLSTE----PLVRG--EWLKPGTHLDLVG 219 (314)
T ss_pred hcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeC
Confidence 89999998887442 22221 3467787654433
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00048 Score=72.10 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=54.3
Q ss_pred ceEEEEc-CCcCcHHHHHHHHHCCCeeEEEe-CChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d-~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
++|+||| .|.||.+||..|.++|++|++|+ ++++. + +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence 5899999 89999999999999999999995 55421 1 2457
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+||+||.|++....+... ++++++++++.+.
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGi 231 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGI 231 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcCC
Confidence 899999999854433322 2788998876543
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00045 Score=73.63 Aligned_cols=91 Identities=18% Similarity=0.110 Sum_probs=68.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+++||||.|.+|..+|+.+.--|.+|..||+++. -+.. +. ....+.+-.+.+++|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~-~~-----------------------~~~~y~~l~ell~~s 201 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE-KE-----------------------LGARYVDLDELLAES 201 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH-hh-----------------------cCceeccHHHHHHhC
Confidence 6899999999999999999977899999999874 1110 00 112223322678999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
|+|+..+|-..+...-+=++..+.++++++++ |++-
T Consensus 202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaR 237 (324)
T COG1052 202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTAR 237 (324)
T ss_pred CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCC
Confidence 99999999888876666677788899998874 7763
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0069 Score=61.46 Aligned_cols=143 Identities=16% Similarity=0.154 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHH--HHHhcCCCcEEE
Q 004726 27 ALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NLIEDCKKPIVA 103 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~-~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~kp~Ia 103 (733)
.++.+-...+...+... +++..+-+|.|.=.+ .|-.|..-++.. ......+++. ....+.+.|+|+
T Consensus 44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp-G~~~g~~aE~~G----------~~~a~A~l~~a~a~a~~~~vP~Is 112 (238)
T TIGR03134 44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP-SQAYGRREELLG----------INQALAHLAKALALARLAGHPVIG 112 (238)
T ss_pred cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC-CCCCCHHHHHHH----------HHHHHHHHHHHHHHhhcCCCCEEE
Confidence 68877777777777774 555666777775432 244443322221 1112222220 234466799999
Q ss_pred EeCCcccchhh-HHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcC--CCCCHHHHHHcCCc
Q 004726 104 AVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS--KSITSEEGWKLGLI 180 (733)
Q Consensus 104 av~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG--~~i~a~eA~~~Glv 180 (733)
.|-|.++|||+ .+.+.+|.++|.+++.++ .++.-+++..+-+-. ..+.++.-+- ...++..+.++|+|
T Consensus 113 vI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~v 183 (238)
T TIGR03134 113 LIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGV 183 (238)
T ss_pred EEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCc
Confidence 99999998876 555568888877766555 555555555554433 3444443322 34677889999999
Q ss_pred cEEcCcchH
Q 004726 181 DAVVTSEEL 189 (733)
Q Consensus 181 ~~vv~~~~l 189 (733)
|+|+++.+-
T Consensus 184 d~vi~~~~~ 192 (238)
T TIGR03134 184 HALLDVADA 192 (238)
T ss_pred cEEeCCCCc
Confidence 999986553
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0017 Score=71.00 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=72.0
Q ss_pred ceEEEEcCCcCcHHHHHHHH-HCCCeeEEEeCChHH-HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||.|.+|..+|+.+. .-|.+|..||+.... .+....... ......+... .......++ +.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccccccccc--------ccccccCCHHHHH
Confidence 58999999999999999986 669999999987642 111000000 0000000000 011122345 568
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS 436 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 436 (733)
+.||+|+.++|-..+...-+=++..+.++++++++ |++- +.-..+.+.+.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 99999999999877765555567778899999885 5652 33334545443
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00028 Score=65.58 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=51.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCe-eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|.|||+|-||++++..|+..|.+ |++++|+.++++...+.+ ....+ .....++. +.+.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~~ 74 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEALQ 74 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHHh
Confidence 5899999999999999999999986 999999999877654321 00000 01112222 4578
Q ss_pred CCCEEEEeccCCh
Q 004726 387 DVDMVIEAVIESV 399 (733)
Q Consensus 387 ~aDlVI~avpe~~ 399 (733)
++|+||.|+|-..
T Consensus 75 ~~DivI~aT~~~~ 87 (135)
T PF01488_consen 75 EADIVINATPSGM 87 (135)
T ss_dssp TESEEEE-SSTTS
T ss_pred hCCeEEEecCCCC
Confidence 9999999998543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.019 Score=59.43 Aligned_cols=139 Identities=15% Similarity=0.218 Sum_probs=82.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCc
Q 004726 25 VNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d----~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp 100 (733)
--+++....+.+..+++.+..| ..+.+|.|.-.|. +-+.+-.. . ...+.+.. ..+ ..+... .|
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG-----aRlqEg~~----~-L~~~a~i~-~~~-~~ls~~-vP 138 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG-----VRLQEANA----G-LIAIAEIM-RAI-LDARAA-VP 138 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC-----cChhhhHH----H-HHHHHHHH-HHH-HHHhCC-CC
Confidence 4678888889999999888752 2234666654332 22221100 0 00111111 111 124444 99
Q ss_pred EEEEeCCc--ccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH--HHHHHHHHcCCCCCHHHHHH
Q 004726 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL--SKAIEMMLLSKSITSEEGWK 176 (733)
Q Consensus 101 ~Iaav~G~--a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~--~~a~~l~ltG~~i~a~eA~~ 176 (733)
+|+++.|+ |+||+..++.+||++|+++++++++.-. .......|. --..+-.|.-+.+.++....
T Consensus 139 ~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~ 207 (274)
T TIGR03133 139 VIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALVWRTTGGKHRFL 207 (274)
T ss_pred EEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhcccccccchHhHhh
Confidence 99999999 8999999999999999999888876211 111111221 11222233334455566778
Q ss_pred cCCccEEcCcc
Q 004726 177 LGLIDAVVTSE 187 (733)
Q Consensus 177 ~Glv~~vv~~~ 187 (733)
.|++|.+++++
T Consensus 208 sG~~D~~v~dd 218 (274)
T TIGR03133 208 SGDADVLVEDD 218 (274)
T ss_pred cccceEEeCCH
Confidence 99999999763
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0004 Score=74.24 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=65.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCChHH--HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhh--cc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALK--ML 376 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~--~i 376 (733)
.||+|||+ |.+|.++|..++..|. +++++|++++. ++.-.-.+. +... .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~--------~~~~------~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELE--------DCAF------PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhh--------hccc------cccCceEE
Confidence 48999999 9999999999998886 79999996532 222111111 0000 0001 12
Q ss_pred ccccCccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 377 KGVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 377 ~~~~~~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
. +.+++++++||+||.+.-- +..+.+++..++.++.+++.+++..|
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 2 4566899999999988721 34556677777888886566655444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=72.63 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=60.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|+|+|.+|..+|+.+...|.+|+++|+++.+++.+.. .|. ......+.++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence 47999999999999999999999999999999988766532 221 101111456789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
|+||+|+.....+. ......++++.+++..
T Consensus 259 DVVI~atG~~~~i~----~~~l~~mk~Ggilvnv 288 (413)
T cd00401 259 DIFVTTTGNKDIIT----GEHFEQMKDGAIVCNI 288 (413)
T ss_pred CEEEECCCCHHHHH----HHHHhcCCCCcEEEEe
Confidence 99999986322222 2334567888877543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00032 Score=76.17 Aligned_cols=109 Identities=15% Similarity=0.112 Sum_probs=69.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||.|.||+.+|+.+...|.+|.+||+.... . + .... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------cccc-cCCHHHHHhh
Confidence 58999999999999999999999999999974321 0 0 0001 1233 56789
Q ss_pred CCEEEEeccCChH----HHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC-CCCcEEEEecC
Q 004726 388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS-SQDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~----~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~-~~~~~ig~h~~ 447 (733)
||+|+..+|-..+ ...-+=++..+.++++++++ |++- +.-..+.+.+. .+..-.++..|
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~ 234 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLNEGQKLSVVLDVW 234 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence 9999999985443 22222245566788999885 5653 33344444443 22334445443
|
|
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0051 Score=71.17 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=73.5
Q ss_pred cCcEEEEEeCC-C-----CCCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC
Q 004726 12 NDGVAIITLIN-P-----PVNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG 75 (733)
Q Consensus 12 ~~~i~~i~l~~-p-----~~Nal~----------~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~ 75 (733)
++.+.+|-++. + +.+.+. ...+.++.++|+.+..|+.|++|||.-.+ +.|.++..+.
T Consensus 41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~---- 113 (584)
T TIGR00705 41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV---- 113 (584)
T ss_pred CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----
Confidence 56788888873 3 123221 23578999999999999999999997542 1233332221
Q ss_pred CCcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCcc
Q 004726 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE 135 (733)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe 135 (733)
...+.+ ..+....|||||..++.+ -+|.-|+.+||.+++.+.+.+++..
T Consensus 114 ---------ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~~G 162 (584)
T TIGR00705 114 ---------EIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDLHG 162 (584)
T ss_pred ---------HHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEeec
Confidence 122333 346678899999888765 6899999999999999988886543
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0034 Score=57.56 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=65.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||.+||+| -|.++|..|++.|++|+++|+++++++.+.+. + .+ ...+.+ +..+.+.-+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~-~~-----~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------G-LN-----AFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------C-Ce-----EEECcC-CCCCHHHHhcC
Confidence 479999999 89999999999999999999999987776432 1 00 000000 12233557899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
|+|-..=| +.-.+.-+-++.+.+..+.+|..-
T Consensus 79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 99998887 443445556778878888777543
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=70.29 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=61.9
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHHHHH-HHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-c-C--
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLK-GIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D-- 381 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~-~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 381 (733)
||+|||+ |.+|+++|..++..|. +++++|++ .++. +.+ +.++.. .-.+..+ . +
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alD---------L~~~~~--------~~~i~~~~~~~~~ 62 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAAD---------LSHINT--------PAKVTGYLGPEEL 62 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehH---------hHhCCC--------cceEEEecCCCch
Confidence 8999999 9999999999998885 89999998 2211 111 111100 0123322 2 2
Q ss_pred ccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 382 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 382 ~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
++++++||+||.+.- .+.++.+++...+.++.+ +++++..|
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vivvt 117 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALILIIS 117 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc
Confidence 689999999998872 245566666777887754 56554433
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=70.81 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=66.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEE--eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccc-
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~- 377 (733)
-||+|||+ |.+|.++|..++..|. .++++ |++++.++.-.-.+..... ..+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEE
Confidence 48999999 9999999999998875 24445 8888876653332322110 0111233
Q ss_pred cccCccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 378 ~~~~~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
.+.+++++++||+||.+.-- +..+.+++...|.++.+++++++..+
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 24566899999999987621 34456666677888777888765444
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00087 Score=69.53 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=53.7
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||. |.||.++|..|.++|++|++|....+.++ +.+++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLA-------------------------------------EVARK 201 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhh
Confidence 58999999 99999999999999999999943221110 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.|++....+... ++++++++++.+
T Consensus 202 ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 202 ADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred CCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 99999999854444333 378999887644
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0079 Score=61.77 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=67.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH-HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||.|.-|.+-|.+|..+|.+|++--+.... .+++ .+. .....+-.++++.
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~d-------------Gf~V~~v~ea~k~ 74 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KED-------------GFKVYTVEEAAKR 74 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------Hhc-------------CCEeecHHHHhhc
Confidence 68999999999999999999999998876654433 2332 222 2333333378899
Q ss_pred CCEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~ 428 (733)
||+|+.-+|+ ++-.++++ +|.+.++++..+. -+.++.+
T Consensus 75 ADvim~L~PD--e~q~~vy~~~I~p~Lk~G~aL~-FaHGfNi 113 (338)
T COG0059 75 ADVVMILLPD--EQQKEVYEKEIAPNLKEGAALG-FAHGFNI 113 (338)
T ss_pred CCEEEEeCch--hhHHHHHHHHhhhhhcCCceEE-eccccce
Confidence 9999999994 44457776 7999999998764 3344443
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0016 Score=71.39 Aligned_cols=86 Identities=23% Similarity=0.192 Sum_probs=59.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+. ..| ....+..+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G-------------~~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDG-------------FRVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcC-------------CEeCCHHHHHhcC
Confidence 4899999999999999999999999999999997644331 112 1111111456789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecC
Q 004726 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT 423 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~t 423 (733)
|+||++... . .++. +....++++++++..+
T Consensus 252 DVVItaTG~-~----~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 252 DIFITATGN-K----DVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CEEEECCCC-H----HHHHHHHHhcCCCCcEEEEEC
Confidence 999998753 2 2232 3455678888876433
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0096 Score=62.92 Aligned_cols=159 Identities=13% Similarity=0.019 Sum_probs=86.1
Q ss_pred cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCccccCCCCEEEEecc
Q 004726 318 LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 396 (733)
Q Consensus 318 ~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avp 396 (733)
.||+.+|..|+++|++|++++|+ +..+... +.|. +....-......+..+++.+.+..+|+||.|++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK 68 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK 68 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence 37999999999999999999997 4444321 1121 000000000002233444555778999999998
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhcccCCCCcEEEEe-cCCCCCCCCe-eE------EecCCC-CCH
Q 004726 397 ESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAH-FFSPAHVMPL-LE------IVRTER-TSA 466 (733)
Q Consensus 397 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~~~ig~h-~~~p~~~~~l-ve------iv~~~~-t~~ 466 (733)
......+++.+.+.+.++++|++...++... .+...+. +.++++.- ++..-...|. ++ +.-|.. .+.
T Consensus 69 --s~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~-~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~ 145 (293)
T TIGR00745 69 --AYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP-ARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGEN 145 (293)
T ss_pred --chhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC-ccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCch
Confidence 3345677888999998888887766665443 3444333 23333221 1111011111 11 111111 122
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
+..+.+.+++...|.......|.-+
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~ 170 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILA 170 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHH
Confidence 4556677777777766555555433
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0012 Score=70.47 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.4
Q ss_pred CCcceEEEEcC-CcCcHHHHHHHHHCC--CeeEEEeCC
Q 004726 306 RGVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVN 340 (733)
Q Consensus 306 ~~~~kI~VIG~-G~mG~~iA~~l~~~G--~~V~~~d~~ 340 (733)
.+|+||+|||+ |.+|+.+|..++..+ .+++++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 35679999999 999999999999665 589999993
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00063 Score=72.75 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=63.8
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG- 378 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~- 378 (733)
||+|||+ |.+|+.+|..|+..|. +++++|+++ +.++.....+..... ........
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence 7999999 9999999999998664 599999987 543221111110000 00011111
Q ss_pred ccCccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 379 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 379 ~~~~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
..+++++++||+||.+.- .+..+.+++..++.++++++.+++..|
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 345688999999998762 145566777778888875666655443
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0017 Score=71.50 Aligned_cols=86 Identities=22% Similarity=0.181 Sum_probs=60.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ....+-.+.++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~~l~eal~~a 268 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVMTMEEAAELG 268 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEecCHHHHHhCC
Confidence 47999999999999999999999999999999877544311 11 1111111456789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecC
Q 004726 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT 423 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~t 423 (733)
|+||+++.. . .++. +....++++++++...
T Consensus 269 DVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 269 DIFVTATGN-K----DVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcC
Confidence 999998742 2 2333 4556678998876443
|
|
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0033 Score=61.25 Aligned_cols=141 Identities=21% Similarity=0.255 Sum_probs=86.6
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
|.|..| ++..+...+...+-.++.++..+-|.| -+-|+...+| ..++ +.+.
T Consensus 30 I~l~g~----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG----------------------~AIy-dtm~ 82 (200)
T COG0740 30 IFLGGE----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------------------LAIY-DTMQ 82 (200)
T ss_pred EEEeee----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh----------------------HHHH-HHHH
Confidence 555554 444455555555555555444444444 3444333332 2556 6788
Q ss_pred cCCCcEEEEeCCcccchhhHHhhhcCEE--EEeCCceEeCccccCCCCCChhhhhhh------------------ccccC
Q 004726 96 DCKKPIVAAVEGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRLVG 155 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD~r--ia~~~a~f~~pe~~~Gl~P~~g~~~~l------------------~r~~G 155 (733)
..+.||...+-|.|...|.-|++++|.. ++.++|++-..... |.+= |.+.-+ ...-|
T Consensus 83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~--G~a~Di~i~A~ei~~~~~~l~~i~a~~TG 159 (200)
T COG0740 83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQ--GQASDIEIHAREILKIKERLNRIYAEHTG 159 (200)
T ss_pred hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCc--cCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999885 88888777654443 2221 111111 11112
Q ss_pred HHH--HHHHHHcCCCCCHHHHHHcCCccEEcCcch
Q 004726 156 LSK--AIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188 (733)
Q Consensus 156 ~~~--a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~ 188 (733)
... -...+-....++|+||+++||||+|....+
T Consensus 160 q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 160 QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred CCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 111 122333567789999999999999986543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0018 Score=65.01 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=56.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh---HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc------
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG------ 378 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~---e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~------ 378 (733)
.+|.|||+|.+|+.+|..|++.|. +++++|.+. +.+.+-. + .. -+-|.-..+.+...+..+..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~--~---~~--~dvG~~Ka~~a~~~l~~lnp~v~v~~ 101 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQ--Y---FI--SQIGMPKVEALKENLLEINPFVEIEA 101 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccE--e---eh--hhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 479999999999999999999998 599999982 2222110 0 00 00111111111111111111
Q ss_pred -----cc-Cc-cccCCCCEEEEeccCChHHHHHHHHHHHHh
Q 004726 379 -----VL-DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 412 (733)
Q Consensus 379 -----~~-~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~ 412 (733)
+. +. +.++++|+||+|+ ++...+..+.......
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEH 141 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHh
Confidence 00 11 3467899999995 6777777777666554
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=69.19 Aligned_cols=92 Identities=10% Similarity=-0.005 Sum_probs=61.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHH--CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|.||...+..+.. ...+|.+||+++++.+...+.+. +.|. .+...++. +++
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~eav 190 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREAV 190 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHHh
Confidence 579999999999997766654 34689999999999876544332 1110 12233444 678
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+||.|+|....+ +. ...+++++.|....|
T Consensus 191 ~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 191 EGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGA 223 (325)
T ss_pred ccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCC
Confidence 9999999999854322 21 234678887755444
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.038 Score=57.46 Aligned_cols=140 Identities=17% Similarity=0.155 Sum_probs=89.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.-+++....+.+..+++.+... .+-+|.++..|. +-+.+-.. ....+.+.. ..+.+....-..|.|++
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQEg~~-----sL~qmak~s-aa~~~~~~~~~vP~Isv 213 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQEGSL-----SLMQMAKIS-SALYDYQSNKKLFYISI 213 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccccch-----hhhhhHHHH-HHHHHHHHcCCCCEEEE
Confidence 5889999999999999998765 466777765443 22211000 011111111 11212122467999999
Q ss_pred eCCcccchhhHH-hhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCC-----CCHHHHHHcC
Q 004726 105 VEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS-----ITSEEGWKLG 178 (733)
Q Consensus 105 v~G~a~GgG~~l-alacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~-----i~a~eA~~~G 178 (733)
+.|+|.||+... ++.||++|+.+++.+++...+ .... .+|+. -+|+-.++.|
T Consensus 214 l~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr--------------------VIe~--t~ge~lpe~fq~ae~l~~~G 271 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR--------------------VIEQ--TLNKTVPEGSQAAEYLFDKG 271 (296)
T ss_pred EcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH--------------------HHHH--hcCCcCCcccccHHHHHhCc
Confidence 999999998755 667999999888877753221 1111 12222 2577788999
Q ss_pred CccEEcCcchHHHHHHHHHH
Q 004726 179 LIDAVVTSEELLKVSRLWAL 198 (733)
Q Consensus 179 lv~~vv~~~~l~~~a~~~a~ 198 (733)
+||.||+..++.+...++..
T Consensus 272 ~vD~iV~r~~lr~~l~~ll~ 291 (296)
T CHL00174 272 LFDLIVPRNLLKGVLSELFQ 291 (296)
T ss_pred CceEEEcHHHHHHHHHHHHH
Confidence 99999999988776665543
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0013 Score=71.09 Aligned_cols=93 Identities=25% Similarity=0.242 Sum_probs=61.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc--Cc-c
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--DY-S 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~--~~-~ 383 (733)
|++|.|||+|.+|+.+|..|++.| .+|++.||+.++++++.+... +.++..+ +.... .+ +
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~-------vD~~d~~al~~ 64 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQ-------VDAADVDALVA 64 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEE-------ecccChHHHHH
Confidence 468999999999999999999999 899999999999888644211 1111100 11111 11 5
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
.+++.|+||.|+|..... .+++. .++.++-.++
T Consensus 65 li~~~d~VIn~~p~~~~~--~i~ka---~i~~gv~yvD 97 (389)
T COG1748 65 LIKDFDLVINAAPPFVDL--TILKA---CIKTGVDYVD 97 (389)
T ss_pred HHhcCCEEEEeCCchhhH--HHHHH---HHHhCCCEEE
Confidence 578889999999944443 44332 3344554443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0022 Score=68.57 Aligned_cols=92 Identities=21% Similarity=0.130 Sum_probs=57.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||+|.||..++..+...| .+|+++|+++++.+...+.+ |. . .+...+..+.+.+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-~---------~~~~~~~~~~l~~ 238 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-N---------AVPLDELLELLNE 238 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-e---------EEeHHHHHHHHhc
Confidence 47999999999999999999866 68999999998765542211 10 0 0000111145678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhC-CCCeEEEec
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATN 422 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~-~~~~ii~s~ 422 (733)
+|+||.|++.+.. ..++..+.... ..+.++++.
T Consensus 239 aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDl 272 (311)
T cd05213 239 ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEe
Confidence 9999999985443 33333332222 234555543
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0071 Score=70.06 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeCCcccc
Q 004726 32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALG 111 (733)
Q Consensus 32 ~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~G 111 (733)
.+.++.++|+.+.+|+.|++|||.-.+.. |.....+ +...+.+ ..+....|||||. ...+.-
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~~-------------~eI~~ai-~~fk~sGKpVvA~-~~~~~s 157 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPSM-------------QYIGKAL-REFRDSGKPVYAV-GDSYSQ 157 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHHH-------------HHHHHHH-HHHHHhCCeEEEE-ecCccc
Confidence 35689999999999999999999754221 1221111 1122333 3467788999985 444456
Q ss_pred hhhHHhhhcCEEEEeCCceEeCcc
Q 004726 112 GGLELAMGCHARIAAPKTQLGLPE 135 (733)
Q Consensus 112 gG~~lalacD~ria~~~a~f~~pe 135 (733)
++.-||.+||.+++.+.+.+++..
T Consensus 158 ~~YyLASaAD~I~l~P~G~v~~~G 181 (618)
T PRK10949 158 GQYYLASFANKIYLSPQGVVDLHG 181 (618)
T ss_pred hhhhhhhhCCEEEECCCceEEEee
Confidence 799999999999999988876544
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.041 Score=57.56 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=63.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCc
Q 004726 25 VNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~----~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp 100 (733)
.-+++....+.+..+++.+..+. .+.+|.|.-.|. +-+.+-.. . ...+.+ ....+ ..+... +|
T Consensus 81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG-----aRlqEg~~----~-L~~~a~-i~~~~-~~ls~~-VP 147 (301)
T PRK07189 81 GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG-----VRLQEANA----G-LAAIAE-IMRAI-VDLRAA-VP 147 (301)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC-----cCccchHH----H-HHHHHH-HHHHH-HHHhCC-CC
Confidence 47888888999999999887654 256677754332 22221100 0 000111 11112 124444 99
Q ss_pred EEEEeCCc--ccchhhHHhhhcCEEEEeCCceEeC
Q 004726 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGL 133 (733)
Q Consensus 101 ~Iaav~G~--a~GgG~~lalacD~ria~~~a~f~~ 133 (733)
+|+++.|. |+||+...+.+||++|+++++++++
T Consensus 148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 99999999 9999999999999999999988776
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.001 Score=70.39 Aligned_cols=94 Identities=27% Similarity=0.328 Sum_probs=61.6
Q ss_pred EEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCE
Q 004726 313 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (733)
Q Consensus 313 VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (733)
|||+|.+|.++|..++..+. +++++|++++.++.....+.....-. ... -.+. ..+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~-~~~-----------~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL-PTP-----------KKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc-CCC-----------eEEe-cCCHHHHCCCCE
Confidence 69999999999999998886 79999999877654333222111000 000 1222 356789999999
Q ss_pred EEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 391 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 391 VI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
||.+.-. +..+.+++..++.++. ++++++
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vi 110 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFL 110 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 9997732 3445566666777765 455444
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0019 Score=69.23 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=62.3
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCChHH--HHHHHHHHHHHHHHhHhcCCCCHHHHH-HHhhcccc
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKG 378 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~i~~ 378 (733)
||+|||+ |.+|..+|..|+..|. +++++|++++. ++.-.-.+ .+.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl---------------~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMEL---------------MDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeeh---------------hcccchhcCceec
Confidence 5899999 9999999999998664 59999996543 21110000 0000 01122333
Q ss_pred c-cCccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 379 V-LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 379 ~-~~~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
+ .+++++++||+||.+.-- +..+.+++..++.++.+++++++..|
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 3 336899999999987621 23345666677888765666665544
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0051 Score=62.39 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=59.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|.|||+|.+|.++|..|.+.|++|+++|.+++.+++..+. .+...+-.|.-+..+... ..-+.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~gd~t~~~~L~----------~agi~~a 67 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIGDATDEDVLE----------EAGIDDA 67 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEecCCCHHHHH----------hcCCCcC
Confidence 479999999999999999999999999999999998774221 000000011111000000 0237899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHh-CCCCeEEE
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKA-CPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~ 420 (733)
|.+|-+..+|.. ..++..+... +....+++
T Consensus 68 D~vva~t~~d~~--N~i~~~la~~~~gv~~via 98 (225)
T COG0569 68 DAVVAATGNDEV--NSVLALLALKEFGVPRVIA 98 (225)
T ss_pred CEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEE
Confidence 999999885544 2444444432 34444554
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0022 Score=71.08 Aligned_cols=88 Identities=23% Similarity=0.279 Sum_probs=61.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+.. .| ... .++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G-------------~~~-~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EG-------------YQV-VTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cC-------------cee-ccHHHHHhc
Confidence 57999999999999999999999999999999876533211 11 111 122 45789
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTID 427 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~ 427 (733)
+|+||.+.. . +.++ .+....++++++++ |++...
T Consensus 310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCC-c----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence 999999864 2 2233 24555678998875 555443
|
|
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.017 Score=62.66 Aligned_cols=147 Identities=21% Similarity=0.252 Sum_probs=102.7
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 12 ~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
+..|.++.++. .+++...+.+.+.++.++++.. .+||| --.+..+ .+...++.
T Consensus 25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl---------------------~~sm~~iv 78 (436)
T COG1030 25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGGL---------------------LDSMRQIV 78 (436)
T ss_pred CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCch---------------------HHHHHHHH
Confidence 34577777754 6999999999999999997753 34444 2222211 12233566
Q ss_pred HHHHhcCCCcEEEEe---CCcccchhhHHhhhcCEEEEeCCceEeCccccCCC--CC-Chh-hhhhh------cccc--C
Q 004726 91 VNLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV--IP-GFG-GTQRL------PRLV--G 155 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav---~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl--~P-~~g-~~~~l------~r~~--G 155 (733)
++|.+.|.||+..| .+.|..+|..++++||+..+++.+.+|--..-.+- .+ ... ....+ .+.- .
T Consensus 79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 77999999988888 34799999999999999999999999865442221 11 011 11111 1111 3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
...|.+++.....++++||++.|++|-+..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence 366788999999999999999999998863
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0051 Score=60.45 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=61.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHC--CC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 310 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
+|++||+|.+|..+...+... .+ .|.+||++.+++..+.+.. ++ ...+++ +.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------------------~~-~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------------------GR-RCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------------------CC-CccccHHHHh
Confidence 699999999999999987654 24 5789999999877653211 11 112455 445
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
++.|+|+||.. .+..+++..++.+. .-++||+| ++.+.
T Consensus 59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~S-VGALa 96 (255)
T COG1712 59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMS-VGALA 96 (255)
T ss_pred hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEe-chhcc
Confidence 99999999997 66666666554432 34666655 44444
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0035 Score=66.27 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=67.0
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
=++|+|+|+|.+|..+|+.|...|..+.-+.|++..-+...+. + ....+..+.+.+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~-----------~-------------~~~~d~~~~~~~ 217 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY-----------Y-------------AEFVDIEELLAN 217 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHh-----------c-------------ccccCHHHHHhh
Confidence 3689999999999999999999994455555655543332111 0 001223367899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+|+||.|.|-+.+...-+=+++...++++.+|+ |++
T Consensus 218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlV-N~a 253 (336)
T KOG0069|consen 218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLV-NTA 253 (336)
T ss_pred CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEE-ecc
Confidence 999999999888887777788889999999886 444
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0085 Score=66.54 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=65.3
Q ss_pred eEEEEcCCcC-cHHHHHHHHHC-----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 310 KVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 310 kI~VIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
||+|||+|.- ...+...|++. +-+|+++|+++++++....-.+ +..+....+ -++..|+|.
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~----~~~~~~g~~--------~~v~~ttD~~ 69 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK----RYVEEVGAD--------IKFEKTMDLE 69 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCHH
Confidence 8999999873 44455555543 4589999999999887433332 222221111 246678887
Q ss_pred cccCCCCEEEEecc----------------------------------CChHHHHHHHHHHHHhCCCCeEEE
Q 004726 383 SEFKDVDMVIEAVI----------------------------------ESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 383 ~~l~~aDlVI~avp----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+++++||+||..+- -+..+..++.+++.+++ |+++++
T Consensus 70 ~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~li 140 (425)
T cd05197 70 DAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYL 140 (425)
T ss_pred HHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEE
Confidence 88999999998872 14456667778888887 455544
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0091 Score=66.44 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=50.8
Q ss_pred ceEEEEcCCcC-cHHHHHHHHHC-----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|.. +..+...+++. +-+|+++|+++++++......+ +..+....+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~----~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK----ILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEECCH
Confidence 38999999875 33445555543 3589999999999887433222 333321111 257778887
Q ss_pred -cccCCCCEEEEec
Q 004726 383 -SEFKDVDMVIEAV 395 (733)
Q Consensus 383 -~~l~~aDlVI~av 395 (733)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 8899999999887
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0054 Score=72.63 Aligned_cols=95 Identities=8% Similarity=0.066 Sum_probs=75.5
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEEecCCCCC------------CCCe
Q 004726 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL 455 (733)
Q Consensus 391 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~~~ig~h~~~p~~------------~~~l 455 (733)
||.|+| +....++++++.++++++++|++.+|+.. +..+.+.+.. ..+|+|.||+.... .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 689999 99999999999999999999988777643 3344444432 35799999976553 3345
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+-+++.+.++++.++.+.++++.+|.+++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 66888888999999999999999999999884
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0038 Score=56.82 Aligned_cols=99 Identities=20% Similarity=0.162 Sum_probs=58.8
Q ss_pred eEEEEcC-CcCcHHHHHHHHHC-CCeeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc--
Q 004726 310 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-- 384 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 384 (733)
||+|||+ |.+|..++..+... +++++.+ +++.+..+.+.. ..+.++. .+....+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCccccc--------ccccccccCChh
Confidence 5899995 99999999999985 8887766 554322222110 0010100 0000011112
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
..++|+||.|+|.+... ++...+...+.+++++++.+|++..
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 24899999999955443 4443444556789999888877654
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0059 Score=67.68 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=49.3
Q ss_pred eEEEEcCCcCcH-HHHHHHHHC-----CCeeEEEeCC-hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 310 KVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 310 kI~VIG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
||+|||+|..-. .+...|++. +-+|+++|++ +++++.....+++. .+....+ -.+..|+|.
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~----~~~~~~~--------~~v~~t~d~ 69 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRM----VKKAGLP--------IKVHLTTDR 69 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHH----HHhhCCC--------eEEEEeCCH
Confidence 899999988633 445555552 3589999999 78876643333322 2221110 146667777
Q ss_pred -cccCCCCEEEEec
Q 004726 383 -SEFKDVDMVIEAV 395 (733)
Q Consensus 383 -~~l~~aDlVI~av 395 (733)
+++.+||+||.++
T Consensus 70 ~~al~gadfVi~~~ 83 (419)
T cd05296 70 REALEGADFVFTQI 83 (419)
T ss_pred HHHhCCCCEEEEEE
Confidence 7899999999887
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0035 Score=65.94 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=36.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
++|.|||+|.+|++++..|+..|. +|+++||+.++++...+
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~ 169 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALAD 169 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 589999999999999999999998 79999999988776544
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0034 Score=65.68 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=36.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|+|+|.+|.+++..|+..|++|++++|++++++...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57999999999999999999999999999999987765433
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0042 Score=60.28 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=47.9
Q ss_pred eEEEEcCCcCcHHHH--HHHHHC----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 310 KVAVIGGGLMGSGIA--TAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 310 kI~VIG~G~mG~~iA--~~l~~~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
||+|||+|..-.+.- ..+... +.+|+++|+|+++++....-.+... +.-..+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~----~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMV----EEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHH----HHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHH----HhcCCC--------eEEEEeCCHH
Confidence 799999999876633 223332 3489999999999987654433332 221111 246668887
Q ss_pred cccCCCCEEEEec
Q 004726 383 SEFKDVDMVIEAV 395 (733)
Q Consensus 383 ~~l~~aDlVI~av 395 (733)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 7899999999888
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0087 Score=60.26 Aligned_cols=106 Identities=26% Similarity=0.368 Sum_probs=70.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
..||.|||.|..|.++|..++..|. +++++|.++++++...=. +++|. +=-...++....|+..-
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MD--------LqH~s-----~f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMD--------LQHGS-----AFLSTPNVVASKDYSVS 86 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhh--------hcccc-----ccccCCceEecCccccc
Confidence 5799999999999999999999986 899999999987643211 11111 00011356667788888
Q ss_pred CCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 386 ~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
+++++||..+-- +.++.+.++.++.++ +|++++...+....
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVD 141 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVD 141 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchH
Confidence 999999987731 334444555555555 56666554443333
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.017 Score=61.15 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=74.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCCh-HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
-||+|||+|.||...+..+.+. +++++ ++|+++ +.+.. ..+ +..+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~-------------v~~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETP-------------VYAVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCC-------------ccccCCHHHh
Confidence 4899999999999999999765 78877 479985 32211 001 1112222 44
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
+.++|+|+.|.|..... ..+.+.+..+.=+++.. +++. .
T Consensus 58 l~~iDVViIctPs~th~-----~~~~~~L~aG~NVV~s~-------------------------~~h~-----------~ 96 (324)
T TIGR01921 58 LDDVDVLILCMGSATDI-----PEQAPYFAQFANTVDSF-------------------------DNHR-----------D 96 (324)
T ss_pred ccCCCEEEEcCCCccCH-----HHHHHHHHcCCCEEECC-------------------------Cccc-----------C
Confidence 57899999999865542 22222233332222210 0111 1
Q ss_pred CHHHHHHHHHHHHHcCCeeEE-EcCCCCcch-hhhhH
Q 004726 465 SAQVILDLMTVGKIIKKVPVV-VGNCTGFAV-NRAFF 499 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~-v~d~pGfi~-nRl~~ 499 (733)
.++..+.+...++.-|+..++ .+=.|||.. ||++.
T Consensus 97 ~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ 133 (324)
T TIGR01921 97 IPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYG 133 (324)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHH
Confidence 357788888888876665554 477788654 78754
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0046 Score=68.39 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=60.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+.. .|. ...+-.+.++.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----------~G~-------------~vv~leEal~~A 310 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----------EGY-------------QVLTLEDVVSEA 310 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----------cCC-------------eeccHHHHHhhC
Confidence 57999999999999999999999999999999876443311 110 001111456789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
|+||++.... . .+..+....++++++++..+.
T Consensus 311 DVVI~tTGt~-~---vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 311 DIFVTTTGNK-D---IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CEEEECCCCc-c---chHHHHHhcCCCCCEEEEcCC
Confidence 9999876522 2 222445556889988864433
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0074 Score=61.73 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=51.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC---Cee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN---IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G---~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
.||+|||+|.||..++..+.+.+ +++ .++++++++.+.... .....++++.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 58999999999999999987643 444 467777755444211 1233445544
Q ss_pred --cCCCCEEEEeccCChHHHHHHHHHHHH
Q 004726 385 --FKDVDMVIEAVIESVPLKQKIFSELEK 411 (733)
Q Consensus 385 --l~~aDlVI~avpe~~~~k~~v~~~l~~ 411 (733)
...+|+||||.. .+..++.-..+.+
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~iL~ 84 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGCLT 84 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHHHh
Confidence 377999999997 7766666555543
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0063 Score=65.47 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=62.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+.+...+ + + .+...++. +.+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~~ 190 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEAI 190 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHHH
Confidence 479999999999999887764 454 89999999998876654432110 1 0 12223443 567
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+++|+||.|.|... .++. ..+++++.|....|
T Consensus 191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs 222 (325)
T PRK08618 191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGS 222 (325)
T ss_pred hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCC
Confidence 89999999998542 3333 35678887765544
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0053 Score=60.80 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=36.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 47999996 999999999999999999999999887766543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0065 Score=58.48 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=53.8
Q ss_pred ceEEEEcCCcC-cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||+|-| |..+|..|.+.|.+|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 58999999987 88899999999999999998854322 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
||+||.|++..--+..+ .++++.++++.+..-
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~pr 119 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINR 119 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCC
Confidence 99999999743322222 245567776655443
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.047 Score=54.66 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 28 LAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
++.++...+...+-.++.++..+- +-|.+.|....+|-=+.. ......++ +.+...+-||...+
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~-------------v~~glaIy-D~m~~ik~~V~Tv~ 114 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF-------------ETEAFAIC-DTMRYIKPPVHTIC 114 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc-------------cccHHHHH-HHHHhcCCCeEEEE
Confidence 344488888888877765443232 333455555444411100 01123556 66788888999999
Q ss_pred CCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhhhh------------------ccccC--HHHHHHHH
Q 004726 106 EGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRLVG--LSKAIEMM 163 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~~l------------------~r~~G--~~~a~~l~ 163 (733)
-|.|.+.+.-|++++|- |++.+++++-+....-|. .|.+.-+ ...-| ...-.+++
T Consensus 115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~---~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~ 191 (222)
T PRK12552 115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA---RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDT 191 (222)
T ss_pred EeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 99999999999999995 999999999887665443 1222111 11112 12223444
Q ss_pred HcCCCCCHHHHHHcCCccEEcCc
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
-....++|+||++.||||+|+.+
T Consensus 192 ~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 192 DRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred cCCCcCCHHHHHHcCCCcEEecc
Confidence 45677899999999999999854
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.069 Score=60.78 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=103.7
Q ss_pred EEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 17 IITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 17 ~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
.|.-|+|. .-++++.-.+...++++.+.+. .+-+|.|.-.+. |..|.+-+. ........+++ .++
T Consensus 318 ~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~----------~g~~~~~a~~~-~a~ 384 (512)
T TIGR01117 318 GIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY----------GGIIRHGAKVL-YAY 384 (512)
T ss_pred EEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH----------HHHHHHHHHHH-HHH
Confidence 34446663 3679999999999999988754 567777754433 655544221 11122333555 567
Q ss_pred hcCCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeCccccCCCCCChhhhhhh-ccccC----HHHHHH-HH-
Q 004726 95 EDCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRL-PRLVG----LSKAIE-MM- 163 (733)
Q Consensus 95 ~~~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l-~r~~G----~~~a~~-l~- 163 (733)
.....|.|++|-|.|.|||..-+. .+|+++|.+++.++. ++.-+++..+ .+.+. ...++. .+
T Consensus 385 ~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~ 457 (512)
T TIGR01117 385 SEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKIA 457 (512)
T ss_pred HhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHHH
Confidence 889999999999999888654333 289998888887764 3323333222 22111 111111 11
Q ss_pred -HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 164 -LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 164 -ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
..-+..++..+.+.|+||.|+++.++.....+..+.+.
T Consensus 458 ~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~ 496 (512)
T TIGR01117 458 EYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLE 496 (512)
T ss_pred HHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHh
Confidence 12234588899999999999999998776666665443
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.007 Score=64.38 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=61.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.+|...+..+.. .+ .+|.+|++++++.++..+.+.. .+ + .+. .++. +++
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence 479999999999999999975 45 4799999999988776543321 11 0 111 2333 578
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+||.|.|....+ +.. .+++++.|....|
T Consensus 187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs 218 (304)
T PRK07340 187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGA 218 (304)
T ss_pred hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCC
Confidence 8999999999855433 322 2578886655444
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0066 Score=63.80 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=50.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC-ccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~l~ 386 (733)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+ .+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 57999999999999999999999 6999999999887765433210 00 0111111 14567
Q ss_pred CCCEEEEeccC
Q 004726 387 DVDMVIEAVIE 397 (733)
Q Consensus 387 ~aDlVI~avpe 397 (733)
++|+||.|+|-
T Consensus 185 ~~DivInaTp~ 195 (278)
T PRK00258 185 DFDLIINATSA 195 (278)
T ss_pred cCCEEEECCcC
Confidence 89999999983
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0047 Score=56.16 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=60.0
Q ss_pred eEEEEc-CCcCcHHHHHHHHHCC-Ce-eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc-Ccccc
Q 004726 310 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF 385 (733)
Q Consensus 310 kI~VIG-~G~mG~~iA~~l~~~G-~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l 385 (733)
||+||| .|.+|..+...|.++- ++ +.++.++.+.-..... .... ......+.+.+ +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~--------~~~~--------~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE--------VFPH--------PKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH--------TTGG--------GTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh--------hccc--------cccccceeEeecchhHh
Confidence 799999 7999999999999853 35 4455665522111100 0000 00001222222 34567
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
.++|+||.|+| .....++..++ ++.++.|+++++.+...
T Consensus 65 ~~~Dvvf~a~~--~~~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALP--HGASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SC--HHHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCc--hhHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 99999999998 66666666655 45778888888876543
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0081 Score=64.61 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=52.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|.+|...+..++. .+. +|++|+|++++.+...+++...+ | + .+...++. +++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 479999999999999999974 564 79999999999877654432110 1 0 12223444 567
Q ss_pred CCCCEEEEeccCC
Q 004726 386 KDVDMVIEAVIES 398 (733)
Q Consensus 386 ~~aDlVI~avpe~ 398 (733)
++||+||.|.|..
T Consensus 193 ~~aDiVvtaT~s~ 205 (326)
T TIGR02992 193 SGADIIVTTTPSE 205 (326)
T ss_pred ccCCEEEEecCCC
Confidence 8999999999853
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0045 Score=68.94 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLK 346 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~ 346 (733)
++|+|||+|.||..++..|...| .+|++++++.++++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 57999999999999999999999 789999999887654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0045 Score=67.70 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=35.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
.+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 579999999999999999999999999999999876654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.006 Score=65.45 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=62.7
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCC-------CeeEEEeCChH--HHHHHHHHHHHHHHHhHhcCCCCHHHHH-HHhhcccc
Q 004726 310 KVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKG 378 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~i~~ 378 (733)
||+|+|+ |.+|+.++..|+..+ .+|+++|+++. .++... ++-.+.. .....+..
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~---------------~Dl~d~~~~~~~~~~~ 68 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVV---------------MELQDCAFPLLKSVVA 68 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccccee---------------eehhhccccccCCcee
Confidence 7999999 999999999998855 48999999653 122100 0000000 00123333
Q ss_pred ccCc-cccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 379 VLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 379 ~~~~-~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
..++ +++++||+||.+.-- +..+.+++..++.++++++++++..|.
T Consensus 69 ~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 69 TTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred cCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 4553 889999999987721 233446666778888766776654443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.017 Score=52.79 Aligned_cols=103 Identities=19% Similarity=0.170 Sum_probs=60.3
Q ss_pred eEEEEcC-CcCcHHHHHHHHH-CCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 310 KVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
||+|+|+ |.||+.++..+.+ .+++++ ++|++++.... +.+ ......+ ...+..++++ +.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~----g~~~~~~----------~~~~~v~~~l~~~~ 65 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDV----GELAGIG----------PLGVPVTDDLEELL 65 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBC----HHHCTSS----------T-SSBEBS-HHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chh----hhhhCcC----------CcccccchhHHHhc
Confidence 7999999 9999999999998 688855 66777621110 000 0000000 0123445555 556
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE 433 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~ 433 (733)
..+|+||+... ++.....++...+ .+..+++.|+++.-.++..
T Consensus 66 ~~~DVvIDfT~--p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~ 108 (124)
T PF01113_consen 66 EEADVVIDFTN--PDAVYDNLEYALK---HGVPLVIGTTGFSDEQIDE 108 (124)
T ss_dssp TH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHH
T ss_pred ccCCEEEEcCC--hHHhHHHHHHHHh---CCCCEEEECCCCCHHHHHH
Confidence 77999999983 6655555555444 3666777888887655443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.025 Score=50.98 Aligned_cols=75 Identities=24% Similarity=0.221 Sum_probs=51.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHC--CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 310 KVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
||+|||+|.+|......+.+. +.+|+ ++|+++++.+...+. -.+...+++ +.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence 799999999999999888877 45654 889999887764221 122344555 334
Q ss_pred C--CCCEEEEeccCChHHHHHHHHHH
Q 004726 386 K--DVDMVIEAVIESVPLKQKIFSEL 409 (733)
Q Consensus 386 ~--~aDlVI~avpe~~~~k~~v~~~l 409 (733)
+ +.|+|+.++|... -.++..+.
T Consensus 59 ~~~~~D~V~I~tp~~~--h~~~~~~~ 82 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSS--HAEIAKKA 82 (120)
T ss_dssp HHTTESEEEEESSGGG--HHHHHHHH
T ss_pred HhhcCCEEEEecCCcc--hHHHHHHH
Confidence 3 7899999999544 33444443
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.047 Score=57.11 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=86.0
Q ss_pred eEEEEcCCcCcHHHHHHHHH-CCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc--
Q 004726 310 KVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-- 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l-- 385 (733)
||++||+|-||+.|+...++ .|++|+ +-|++.+.+.++.++.-..-...++....+.-...-..+.+..|+|.+.+
T Consensus 19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~~ 98 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELIIA 98 (438)
T ss_pred EEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhhc
Confidence 79999999999999987775 598876 45898888777655321100011111111111111222456666666433
Q ss_pred -CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC-CCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCC
Q 004726 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST-IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (733)
Q Consensus 386 -~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~-~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~ 463 (733)
...|+||++.--..---+-.+..+ ....-++..|.-. ..+.-+..... .-.|.- ...+..
T Consensus 99 ~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~A---d~~Gvi------------yS~~~G 160 (438)
T COG4091 99 NDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQA---DAAGVI------------YSGGAG 160 (438)
T ss_pred CCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHH---hhcCeE------------EeccCC
Confidence 456889988742122222223333 3333455444321 22211111110 111221 222333
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
-.|..+-.+.+|.+.+|..++.++
T Consensus 161 DeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 161 DEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred CCcHHHHHHHHHHHhcCCeEEecc
Confidence 467788888999999999999986
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0063 Score=58.02 Aligned_cols=70 Identities=23% Similarity=0.221 Sum_probs=49.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+||+|||+ |..|+.|+.-..+.||+|+.+-||++++..- +.+ ..+++...+. +...+++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~-----~i~q~Difd~------------~~~a~~l~g 62 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGV-----TILQKDIFDL------------TSLASDLAG 62 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccc-----eeecccccCh------------hhhHhhhcC
Confidence 48999999 9999999999999999999999999987541 000 0011121111 111256889
Q ss_pred CCEEEEecc
Q 004726 388 VDMVIEAVI 396 (733)
Q Consensus 388 aDlVI~avp 396 (733)
-|.||.+.-
T Consensus 63 ~DaVIsA~~ 71 (211)
T COG2910 63 HDAVISAFG 71 (211)
T ss_pred CceEEEecc
Confidence 999999984
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0086 Score=66.88 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=34.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (733)
++|+|||+|.||..++..|...|. +|+++++++++++..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l 222 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL 222 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 479999999999999999999997 899999999876543
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.03 Score=68.22 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCcCcHHHHHHHHHC-CC
Q 004726 259 GYSGVLKEAKVFKELVMLDT-----SRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NI 332 (733)
Q Consensus 259 ~~~~l~~E~~~~~~~~~s~~-----~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~l~~~-G~ 332 (733)
-++.|......+..+.+..+ ..+..+.|....+.+..............++||+|||+|.||...|..|++. ++
T Consensus 515 d~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~ 594 (1042)
T PLN02819 515 DKEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTI 594 (1042)
T ss_pred cHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCc
Confidence 35555555555555554222 2344555554433332211111223345578999999999999999999875 33
Q ss_pred e-------------eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccCc----cccCCCCEEEEe
Q 004726 333 Y-------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----SEFKDVDMVIEA 394 (733)
Q Consensus 333 ~-------------V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~----~~l~~aDlVI~a 394 (733)
+ |++.|++++.++++.+.+ . + ++ .+.. .++. +.++++|+||.|
T Consensus 595 ~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~--------~-~-~~---------~v~lDv~D~e~L~~~v~~~DaVIsa 655 (1042)
T PLN02819 595 SYYGDDSEEPTDVHVIVASLYLKDAKETVEGI--------E-N-AE---------AVQLDVSDSESLLKYVSQVDVVISL 655 (1042)
T ss_pred cccccccccccccEEEEECCCHHHHHHHHHhc--------C-C-Cc---------eEEeecCCHHHHHHhhcCCCEEEEC
Confidence 4 999999998876643211 0 1 00 0111 1222 334789999999
Q ss_pred ccCCh
Q 004726 395 VIESV 399 (733)
Q Consensus 395 vpe~~ 399 (733)
+|...
T Consensus 656 lP~~~ 660 (1042)
T PLN02819 656 LPASC 660 (1042)
T ss_pred CCchh
Confidence 99544
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.056 Score=53.84 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=75.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH-HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||+|.+|...+..|.++|++|++++++.. .+.. +.+.+.+. ...-.-..+.+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIR---------WKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEE---------EEecCCChhhcCC
Confidence 5899999999999999999999999999987532 1111 12222111 0000111256889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCC--CCCCeeEEecCCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~--~~~~lveiv~~~~t~ 465 (733)
+|+||-|+. +.++...+... +..+. ++.+....+ . ..|..|. ..+++.-.|.+...+
T Consensus 71 adlViaaT~-d~elN~~i~~~----a~~~~-lvn~~d~~~------------~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKED----LPENA-LFNVITDAE------------S---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHHH----HHhCC-cEEECCCCc------------c---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999888764 66665555433 22333 332221111 1 1222232 344555566666678
Q ss_pred HHHHHHHHHHHHH
Q 004726 466 AQVILDLMTVGKI 478 (733)
Q Consensus 466 ~e~~~~~~~l~~~ 478 (733)
|.....+++-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8877777776665
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0085 Score=67.81 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=50.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++++|+|+|.||.+++..|++.|++|+++|+++++++...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 4799999999999999999999999999999988766543211 000010 1112335789
Q ss_pred CEEEEeccCCh
Q 004726 389 DMVIEAVIESV 399 (733)
Q Consensus 389 DlVI~avpe~~ 399 (733)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999999554
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.012 Score=63.39 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=51.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.+|...+..+.. .+ .+|++|+|+++++++..+.+.+.+ + + .+...++. +++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence 479999999999999888875 45 589999999999887654432110 1 0 12223444 567
Q ss_pred CCCCEEEEeccCC
Q 004726 386 KDVDMVIEAVIES 398 (733)
Q Consensus 386 ~~aDlVI~avpe~ 398 (733)
++||+||.|.|..
T Consensus 196 ~~aDiVi~aT~s~ 208 (330)
T PRK08291 196 AGADIIVTTTPSE 208 (330)
T ss_pred ccCCEEEEeeCCC
Confidence 8899999998743
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.012 Score=61.35 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=53.9
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||.|. +|.++|..|.+.|.+|+++++....++ +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 5899999987 999999999999999999987543221 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.|++-.- ++.. ..+++++++++..+
T Consensus 202 ADIVIsAvg~p~-----~i~~--~~vk~gavVIDvGi 231 (286)
T PRK14175 202 ADVIVSAVGKPG-----LVTK--DVVKEGAVIIDVGN 231 (286)
T ss_pred CCEEEECCCCCc-----ccCH--HHcCCCcEEEEcCC
Confidence 999999997322 2221 24678888876554
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.014 Score=61.51 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=36.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
++|.|||+|-+|++++..|+..|. +|++++|++++.+...+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 479999999999999999999997 79999999988776543
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0064 Score=68.99 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=54.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|+|||+|.||..++..|...|. +|++++++.++++...+.+ . +. . -.+...++. +.+.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~--------~-g~-~--------i~~~~~~dl~~al~ 328 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF--------P-DV-E--------IIYKPLDEMLACAA 328 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh--------C-CC-c--------eEeecHhhHHHHHh
Confidence 589999999999999999999997 7999999998876643211 0 10 0 000011122 5578
Q ss_pred CCCEEEEeccC-ChHHHHHHHHHH
Q 004726 387 DVDMVIEAVIE-SVPLKQKIFSEL 409 (733)
Q Consensus 387 ~aDlVI~avpe-~~~~k~~v~~~l 409 (733)
++|+||.|++. .+-+..+.++.+
T Consensus 329 ~aDVVIsAT~s~~pvI~~e~l~~~ 352 (519)
T PLN00203 329 EADVVFTSTSSETPLFLKEHVEAL 352 (519)
T ss_pred cCCEEEEccCCCCCeeCHHHHHHh
Confidence 89999998753 223344444444
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0096 Score=58.05 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=33.1
Q ss_pred EEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 311 I~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
|.|+|+ |.+|..++..|.+.|++|+++-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 689997 999999999999999999999999987654
|
... |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.034 Score=55.48 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=77.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|.|||+|.+|..-+..|++.|.+|++++.+... . +..+.+.|.+. .+.-.-..+.+.++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~--------l~~l~~~~~i~---------~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--E--------LTLLAEQGGIT---------WLARCFDADILEGA 70 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--H--------HHHHHHcCCEE---------EEeCCCCHHHhCCc
Confidence 48999999999999999999999999999886541 1 11122222211 00001112457899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCC--CCCCCeeEEecCCCCCH
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP--AHVMPLLEIVRTERTSA 466 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p--~~~~~lveiv~~~~t~~ 466 (733)
|+||.|. ++.++...++....+ .+ +++...+.... ..|..| ...++++-.|.+...+|
T Consensus 71 ~lVi~at-~d~~ln~~i~~~a~~---~~-ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~sP 130 (205)
T TIGR01470 71 FLVIAAT-DDEELNRRVAHAARA---RG-VPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAAP 130 (205)
T ss_pred EEEEECC-CCHHHHHHHHHHHHH---cC-CEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCCc
Confidence 9999874 566666666554332 23 33322221111 122223 23445555566667788
Q ss_pred HHHHHHHHHHHHc
Q 004726 467 QVILDLMTVGKII 479 (733)
Q Consensus 467 e~~~~~~~l~~~l 479 (733)
.....+++-++.+
T Consensus 131 ~la~~lr~~ie~~ 143 (205)
T TIGR01470 131 VLARLLRERIETL 143 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 8777777666654
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.012 Score=60.98 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=47.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.||+|+|+ |.||..++..+.+. +++++ ++|++++..... .. ..+...+++ +.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 48999998 99999999988864 67766 588887653321 00 012234455 34
Q ss_pred cCCCCEEEEeccCChHHHHHHH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIF 406 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~ 406 (733)
++++|+||++.| ++.-.++.
T Consensus 58 l~~~DvVid~t~--p~~~~~~~ 77 (257)
T PRK00048 58 LADADVLIDFTT--PEATLENL 77 (257)
T ss_pred ccCCCEEEECCC--HHHHHHHH
Confidence 567999998887 44433433
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.029 Score=62.62 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=76.7
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
.++|.|||.|.+|.++|..|.+.|++|+++|++++.+... . .++. . ...+. ....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~-~----~~~~-----------------~--~~~~~~~~~~ 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSC-P----YIHE-----------------R--YLENAEEFPE 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchh-H----HHhh-----------------h--hcCCcHHHhc
Confidence 4689999999999999999999999999999887653321 0 0000 0 00111 2236
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
++|+||.+.+.+.. ...+++.. ..+..+++.+ +++-.. . .+.. .+.+ .|.|..-..
T Consensus 59 ~~dlvV~s~gi~~~--~~~l~~A~---~~g~~vv~~~------~~~~~~-~-------~~~~----~~~I-~ITGT~GKT 114 (418)
T PRK00683 59 QVDLVVRSPGIKKE--HPWVQAAI---ASHIPVVTDI------QLAFQT-P-------EFTR----YPSL-GITGSTGKT 114 (418)
T ss_pred CCCEEEECCCCCCC--cHHHHHHH---HCCCcEEEHH------HHHHhh-h-------hcCC----CCEE-EEECCCChH
Confidence 79999998865432 33333322 3344344432 111100 0 0001 1122 344545556
Q ss_pred HHHHHHHHHHHHcCCeeEEEcC
Q 004726 467 QVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d 488 (733)
.+.+.+..+++..|+....++.
T Consensus 115 TTt~ml~~iL~~~g~~~~~~Gn 136 (418)
T PRK00683 115 TTILFLEHLLKRLGIPAFAMGN 136 (418)
T ss_pred HHHHHHHHHHHHcCCCeEEECC
Confidence 6677788888888886666665
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.016 Score=61.78 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=57.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHH---CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc--ccC-
Q 004726 309 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD- 381 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~---~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~--~~~- 381 (733)
+||+|||+ |.+|.++|..+.. .+++++++|+++.....+.+ +.+. .....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD---------l~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD---------LSHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh---------hhcC--------CCCceEEEeCCCCH
Confidence 48999999 9999999998855 24689999998542111010 0010 00011222 344
Q ss_pred ccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 382 ~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
++++++||+||.|.-. +..+.+++.+.+.++. ++.+++
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi 115 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIG 115 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 4788999999999832 2225556666777774 445554
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.024 Score=60.36 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=62.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.+.++|||+|.++.-....+..- .-+|.+|++++++.++...++++ .+. ..+...++. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~----------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGG----------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcC----------ccceeccCHHHH
Confidence 35799999999999999888763 34899999999998887554322 111 013334454 78
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+++||+|+.|.|.+..+ +. .+.+++++-|..
T Consensus 193 v~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~a 223 (330)
T COG2423 193 VEGADIVVTATPSTEPV----LK--AEWLKPGTHINA 223 (330)
T ss_pred hhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEe
Confidence 89999999999854432 21 234567776543
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.023 Score=56.71 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=30.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (733)
+||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 479999999999999999999997 89999987
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.02 Score=61.68 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=59.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.+|...+..+... +. .|.+||+++++.++..+.+.+. .+ -.+...++. +.+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~-----------~~v~~~~~~~~~l 192 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VG-----------CDVTVAEDIEEAC 192 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cC-----------ceEEEeCCHHHHh
Confidence 4799999999999999988753 43 7889999999888765543211 01 012223444 445
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+ +|+|+.|.|.... ++. .+.+++++.|.+..|
T Consensus 193 ~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs 224 (326)
T PRK06046 193 D-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGA 224 (326)
T ss_pred h-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence 5 9999999985432 221 124577777654444
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.019 Score=60.90 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=62.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-C-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|.+|...+..++.- . -+|.+|+|++++.++..+++.+.+ | -.+...++. +++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav 180 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL 180 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 4799999999999999888763 3 379999999999887655443210 1 023334444 678
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+|+.|.+.... ++. .+.+++++.|....|
T Consensus 181 ~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs 213 (301)
T PRK06407 181 RDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGS 213 (301)
T ss_pred hcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCC
Confidence 999999999874432 221 124567776654444
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.049 Score=48.76 Aligned_cols=95 Identities=21% Similarity=0.135 Sum_probs=57.3
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCE
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (733)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+.- - .+-.|-.+..+.-. ...+.+|+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----~-~~i~gd~~~~~~l~----------~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----V-EVIYGDATDPEVLE----------RAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----S-EEEES-TTSHHHHH----------HTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----c-ccccccchhhhHHh----------hcCccccCE
Confidence 57999999999999999997779999999999977753310 0 00011111000000 034678999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 391 VIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 391 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
||.+.+++. ....+...+.+..+.-.+++-
T Consensus 66 vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 66 VVILTDDDE-ENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp EEEESSSHH-HHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEccCCHH-HHHHHHHHHHHHCCCCeEEEE
Confidence 999987553 333333444444444455543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.017 Score=59.92 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=53.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-cCc---
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--- 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 382 (733)
+||++||.|.+-.+.-...... |..|+.+|+++++.+.+.+-+...+. +. .++.+. .+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5899999999976655444343 56799999999998887543331110 01 122222 121
Q ss_pred -cccCCCCEEEEecc--CChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 383 -SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 383 -~~l~~aDlVI~avp--e~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
..++++|+|+.|.- .+.+-|.+++..|.+++++|++|+.
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 34788999999874 2334799999999999999998864
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.031 Score=59.65 Aligned_cols=92 Identities=9% Similarity=0.071 Sum_probs=62.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|.++...+..+... --+|.+|++++++.++..+.++ +.+ -.+...++. +++
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-----------~~v~~~~~~~~av 190 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-----------FAVNTTLDAAEVA 190 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-----------CcEEEECCHHHHh
Confidence 5799999999999999887753 2489999999999887654321 111 123334444 678
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+|+.|.+.... ++. .+.+++++.|....|
T Consensus 191 ~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs 223 (315)
T PRK06823 191 HAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGA 223 (315)
T ss_pred cCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCC
Confidence 999999999874433 232 134678887655444
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.021 Score=59.63 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=37.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|+|+|-++.+++..|++.|. +|++++|+.+++++..+.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 579999999999999999999995 899999999998876543
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.23 Score=50.35 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=74.9
Q ss_pred cccccc-CccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccC----CCCcEEEEecCCC
Q 004726 375 MLKGVL-DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS----SQDRIIGAHFFSP 449 (733)
Q Consensus 375 ~i~~~~-~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~----~~~~~ig~h~~~p 449 (733)
.+..++ |.++++++|++|.-.|..-. ...+.+++...+++++|| +||.|++...+...+. ....+..+||-.-
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV 205 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV 205 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 344444 45899999999999985332 236678888899999987 5777777765554432 2235666776443
Q ss_pred CCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 450 ~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
|.. +.-..+.-...++|.++++.++.+..|+.++++.
T Consensus 206 Pgt-~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 206 PEM-KGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CCC-CCceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 322 2111223345689999999999999999999883
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.095 Score=54.71 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=67.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh-HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+++||+|.|.+|+-.|.++..-|..|+.||.-. .....+ -.++..+-.+.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a--------------------------~gvq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA--------------------------FGVQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh--------------------------ccceeeeHHHHHhh
Confidence 579999999999999999999999999998643 222211 12333443477899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+|-.-+|-.++.+.-+-.+....++++.-|+ |+|
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~a 236 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVA 236 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-Eec
Confidence 999999999888887777677777888988664 555
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.35 Score=49.27 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=75.0
Q ss_pred cccccc-CccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcc---cC-CCCcEEEEecCCC
Q 004726 375 MLKGVL-DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TS-SQDRIIGAHFFSP 449 (733)
Q Consensus 375 ~i~~~~-~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~-~~~~~ig~h~~~p 449 (733)
.+..++ |.++++++|++|.-.|..-. ...+.+++...+++++|| +||.|++...+... +. ....+..+||-.-
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaV 203 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCV 203 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCC
Confidence 344444 45899999999999985332 236677888889999987 56777776644433 33 2235666777443
Q ss_pred CCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 450 ~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
|..-..+=++ ....++|.++++.++.+..|+.++++.
T Consensus 204 Pgt~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 204 PEMKGQVYIA-EGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CCCCCceEee-cccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 3222223233 345689999999999999999999883
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.022 Score=58.81 Aligned_cols=92 Identities=23% Similarity=0.302 Sum_probs=63.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc--cc--Cc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VL--DY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~--~~--~~-~ 383 (733)
.||+|||.|..|.--|+...--|-+|++.|+|.+++...-.. . . +++.. ++ ++ +
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~--------f-~------------~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL--------F-G------------GRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh--------h-C------------ceeEEEEcCHHHHHH
Confidence 589999999999999999888899999999999988764211 1 0 12221 11 12 6
Q ss_pred ccCCCCEEEEecc-CChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 384 EFKDVDMVIEAVI-ESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 384 ~l~~aDlVI~avp-e~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
.+..+|+||-+|- ...+.-+-+.+++.+.++++++|++
T Consensus 228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 7899999999881 0111112345666677889988875
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.017 Score=63.93 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=34.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (733)
++|.|||+|-||..++..|+..|. ++++++|+.++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~L 221 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKI 221 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 479999999999999999999995 799999998876554
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.032 Score=60.90 Aligned_cols=41 Identities=27% Similarity=0.239 Sum_probs=36.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|||+|-||...|.+|+++| ..|++.+|+.+++....+
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~ 220 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK 220 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 47999999999999999999999 589999999999877543
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.014 Score=64.58 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=45.8
Q ss_pred EEEEcCCcCcHHHHHHHHHCC-C-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC--c-ccc
Q 004726 311 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEF 385 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G-~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l 385 (733)
|.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..+.+ ....+.. ..+...+. + +.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--------~~~~~~~-------~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--------LGDRVEA-------VQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----------TTTTEEE-------EE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--------cccceeE-------EEEecCCHHHHHHHH
Confidence 789999999999999999987 4 8999999999988754321 1111100 00111111 1 457
Q ss_pred CCCCEEEEeccC
Q 004726 386 KDVDMVIEAVIE 397 (733)
Q Consensus 386 ~~aDlVI~avpe 397 (733)
+++|+||.|+|.
T Consensus 66 ~~~dvVin~~gp 77 (386)
T PF03435_consen 66 RGCDVVINCAGP 77 (386)
T ss_dssp TTSSEEEE-SSG
T ss_pred hcCCEEEECCcc
Confidence 899999999973
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.031 Score=56.92 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=66.2
Q ss_pred HHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH
Q 004726 93 LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (733)
Q Consensus 93 ~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~ 172 (733)
.+.++++|+||.|=|---+||.--..-+|.+.+.++++|+. |.|.++++.+|.- ..+|.+. -....|+|+
T Consensus 183 em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eA-Ae~mkita~ 252 (317)
T COG0825 183 EMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEA-AEAMKITAH 252 (317)
T ss_pred HHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHH-HHHcCCCHH
Confidence 58899999999999987777766666779999999999984 5677777766654 3445443 345689999
Q ss_pred HHHHcCCccEEcCc
Q 004726 173 EGWKLGLIDAVVTS 186 (733)
Q Consensus 173 eA~~~Glv~~vv~~ 186 (733)
+.+++|+||.|+|.
T Consensus 253 dLk~lgiID~II~E 266 (317)
T COG0825 253 DLKELGIIDGIIPE 266 (317)
T ss_pred HHHhCCCcceeccC
Confidence 99999999999974
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.12 Score=58.85 Aligned_cols=127 Identities=22% Similarity=0.204 Sum_probs=84.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCC--CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~I 102 (733)
..+++......+..+++.+..+ .+-+|.|.- |.|+ ++.+-... ...+.... .-. ..+.. ..|+|
T Consensus 70 gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~~-----l~~~g~i~-~~~-~~~~~-~iP~I 135 (493)
T PF01039_consen 70 GGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVES-----LMGMGRIF-RAI-ARLSG-GIPQI 135 (493)
T ss_dssp GGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHHH-----HHHHHHHH-HHH-HHHHT-TS-EE
T ss_pred cCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhhh-----hhhhHHHH-HHH-HHHhc-CCCeE
Confidence 4889999999999999999866 455666643 3344 33322110 01111111 222 23555 99999
Q ss_pred EEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHH-------
Q 004726 103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG------- 174 (733)
Q Consensus 103 aav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA------- 174 (733)
+++.|.|.|||..++..||++|++++ +.+++. |+... + ..+|+.++.++.
T Consensus 136 ~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~vv-~-~~~Ge~~~~~~lgG~~~h~ 193 (493)
T PF01039_consen 136 SVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRVV-E-SATGEEVDSEELGGADVHA 193 (493)
T ss_dssp EEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHHH-H-HHHSSCTSHHHHHBHHHHH
T ss_pred EEEccccccchhhcccccCccccCccceEEEec--------------------ccccc-c-cccCccccchhhhhhhhhc
Confidence 99999999999999999999999987 776642 11111 1 345788888764
Q ss_pred HHcCCccEEcCcc
Q 004726 175 WKLGLIDAVVTSE 187 (733)
Q Consensus 175 ~~~Glv~~vv~~~ 187 (733)
...|.+|.+++++
T Consensus 194 ~~sG~~d~v~~de 206 (493)
T PF01039_consen 194 AKSGVVDYVVDDE 206 (493)
T ss_dssp HTSSSSSEEESSH
T ss_pred ccCCCceEEEech
Confidence 4789999999765
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.052 Score=61.42 Aligned_cols=41 Identities=24% Similarity=0.121 Sum_probs=37.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
.||.|+|+|.+|...++.+...|.+|+++|+++++++.+.+
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 58999999999999999999999999999999999887643
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.015 Score=62.07 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=53.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|..+..-+..++. .++ +|.+|+|+++++++..++++. .+ -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence 479999999999999888765 344 899999999988876554321 01 123444555 779
Q ss_pred CCCCEEEEeccCCh--HHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 386 ~~aDlVI~avpe~~--~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
++||+|+.|.|... .+ +. ...+++++.|....+.
T Consensus 191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence 99999999997444 22 21 1356788877655543
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.043 Score=59.19 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 479999999999999999999998 899999985
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.048 Score=56.19 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=42.0
Q ss_pred CCcceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHH
Q 004726 306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA 353 (733)
Q Consensus 306 ~~~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~ 353 (733)
+..+++.|-|+ +-+|..+|..|++.|++|+++.|+++++++..+++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 34567888898 9999999999999999999999999999988776654
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.043 Score=57.53 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=51.2
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||.|. .|.++|..|.+.|.+|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 4799999997 999999999999999999998433221 23478
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
+|+||.|++...- +. .+.+++++++++.
T Consensus 203 aDIvI~AtG~~~~-----v~--~~~lk~gavViDv 230 (283)
T PRK14192 203 ADIIVGAVGKPEL-----IK--KDWIKQGAVVVDA 230 (283)
T ss_pred CCEEEEccCCCCc-----CC--HHHcCCCCEEEEE
Confidence 9999999952221 11 1346788887653
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.27 Score=51.05 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=56.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHH-HhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN-ALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~-~~~~i~~~~~~~~l~ 386 (733)
.+|+|+|+|.+|.+.++....+|. +++.+|+|+++.+.+.+- -...-+.+.+... ....|.--++ .
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f--------GaTe~iNp~d~~~~i~evi~EmTd----g 261 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF--------GATEFINPKDLKKPIQEVIIEMTD----G 261 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc--------CcceecChhhccccHHHHHHHHhc----C
Confidence 369999999999999999999986 899999999999887532 0111111111111 1111211111 6
Q ss_pred CCCEEEEeccCChHHHHHHHHH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSE 408 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~ 408 (733)
+.|+-+||+- ++++.++.+..
T Consensus 262 GvDysfEc~G-~~~~m~~al~s 282 (375)
T KOG0022|consen 262 GVDYSFECIG-NVSTMRAALES 282 (375)
T ss_pred CceEEEEecC-CHHHHHHHHHH
Confidence 7999999996 56655555443
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.06 Score=58.09 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=60.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|..+...+..+..- -.+|++|++++++.++..+++.+ .+ + .+...++. +++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~av 191 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEAV 191 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHHH
Confidence 5799999999998887766642 24899999999998876554321 11 0 13334444 678
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+|+.|.+.... ..++. .+.+++++.|....|
T Consensus 192 ~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs 226 (346)
T PRK07589 192 EGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGG 226 (346)
T ss_pred hcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCC
Confidence 999999999963220 01111 134678886654444
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.46 Score=50.73 Aligned_cols=41 Identities=24% Similarity=0.153 Sum_probs=34.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|+|+|+|-+|..-.+.....|.+|+.+|+++++++.+++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 48999999977776666666689999999999999887643
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.029 Score=58.43 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=53.2
Q ss_pred ceEEEEcCCcC-cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||.|.. |.++|..|.+.|.+|+++......+. +.+++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~-------------------------------------~~~~~ 201 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLA-------------------------------------AHTRQ 201 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHH-------------------------------------HHhhh
Confidence 58999999877 99999999999999998764322111 34688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.+++-. .++.. ..+++++++++..
T Consensus 202 ADIVV~avG~~-----~~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 202 ADIVVAAVGKR-----NVLTA--DMVKPGATVIDVG 230 (285)
T ss_pred CCEEEEcCCCc-----CccCH--HHcCCCCEEEEcc
Confidence 99999999822 23332 5688999887644
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.057 Score=45.76 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=28.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeEEEeC
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEV 339 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~~~d~ 339 (733)
++++|+|.|.+|.+++..+... +.+|++||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999999999998 678999987
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.04 Score=57.45 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=45.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc-
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 385 (733)
.||+|||+|.||..++..+.+. +.++..+ +++. ..++..+. .. ..+..+++++.+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~-~~~~~~~~--------~~-------------~~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEH-SIDAVRRA--------LG-------------EAVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCC-CHHHHhhh--------hc-------------cCCeeeCCHHHhc
Confidence 4899999999999999999876 5665433 3322 11111100 00 023344555444
Q ss_pred CCCCEEEEeccCChHHHHHHHHHH
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSEL 409 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l 409 (733)
.++|+||+|.| ...-.++..+.
T Consensus 60 ~~~DvVve~t~--~~~~~e~~~~a 81 (265)
T PRK13303 60 QRPDLVVECAG--HAALKEHVVPI 81 (265)
T ss_pred cCCCEEEECCC--HHHHHHHHHHH
Confidence 56899999998 33333444433
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.52 Score=54.21 Aligned_cols=147 Identities=16% Similarity=0.086 Sum_probs=87.5
Q ss_pred EEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHH--HH
Q 004726 18 ITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NL 93 (733)
Q Consensus 18 i~l~~p--~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~ 93 (733)
+.-|.+ ...+++....+.+..+++.+.+. .+-+|.|.-.|+.+ +.+ ..+ ........-+++. .+
T Consensus 133 v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGar-----l~~-----q~e-~~~~~~~~g~if~~~~~ 200 (569)
T PLN02820 133 FVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGAN-----LPR-----QAE-VFPDRDHFGRIFYNQAR 200 (569)
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-----Ccc-----ccc-ccchHhHHHHHHHHHHH
Confidence 333444 35899999999999999998765 45677775443332 211 000 0000001112221 22
Q ss_pred HhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH
Q 004726 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (733)
Q Consensus 94 i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~ 172 (733)
+.....|.|++|.|.|.|||......||++|+++. +.+++ .|+...+ ..+|+.++++
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~--------------------aGP~vV~--~~~Ge~v~~e 258 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL--------------------AGPPLVK--AATGEEVSAE 258 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe--------------------cCHHHHH--hhcCcccCHH
Confidence 44567999999999999999999999999999964 54443 1222221 1456667766
Q ss_pred HHH-------HcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 173 EGW-------KLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 173 eA~-------~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
+.- .-|.+|.+++++ .++...++++.
T Consensus 259 eLGGa~~h~~~sGv~d~~~~de---~~a~~~~R~ll 291 (569)
T PLN02820 259 DLGGADVHCKVSGVSDHFAQDE---LHALAIGRNIV 291 (569)
T ss_pred HhCCHHHhcccccccccccCch---HHHHHHHHHHH
Confidence 652 468888887544 23344444443
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.088 Score=59.45 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=35.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
+|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 79999999999999999999999999999999987764
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.44 Score=54.29 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=83.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHH-HHHhcCCCcEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV-NLIEDCKKPIVA 103 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kp~Ia 103 (733)
.-+++....+.+..+++.+.++. +-+|.|.-.|.. .+.+-.. . ...+. +.+. .....-..|.|+
T Consensus 95 gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGa-----rm~eg~~----~-l~~~~----~~~~~~~~~s~~iP~Is 159 (512)
T TIGR01117 95 GGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGA-----RIQEAVD----A-LKGYG----DIFYRNTIASGVVPQIS 159 (512)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCC-----Cccccch----h-hhhHH----HHHHHHHHHcCCCcEEE
Confidence 47888899999999999887654 556666533322 2211000 0 00111 1121 112334589999
Q ss_pred EeCCcccchhhHHhhhcCEEEEeCCc-eEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHH-------H
Q 004726 104 AVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------W 175 (733)
Q Consensus 104 av~G~a~GgG~~lalacD~ria~~~a-~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA-------~ 175 (733)
++.|.|.||+......||++|+.+++ .+++ -|+...+. .+|+.+++++. .
T Consensus 160 vv~G~~~GG~a~~~al~D~vim~~~~a~i~~--------------------aGP~vv~~--~~Ge~v~~e~lGGa~~h~~ 217 (512)
T TIGR01117 160 AIMGPCAGGAVYSPALTDFIYMVDNTSQMFI--------------------TGPQVIKT--VTGEEVTAEQLGGAMAHNS 217 (512)
T ss_pred EEecCCCcHHHHHHHhcCceEEeccceEEEe--------------------cChHHHHh--hcCcccchhhcchHHHhcc
Confidence 99999999998888899999999864 3443 12111111 34566666554 3
Q ss_pred HcCCccEEcCc-chHHHHHHHHHHHH
Q 004726 176 KLGLIDAVVTS-EELLKVSRLWALDI 200 (733)
Q Consensus 176 ~~Glv~~vv~~-~~l~~~a~~~a~~~ 200 (733)
.-|++|.++++ ++..+.++++..-+
T Consensus 218 ~sGv~d~~~~de~ea~~~~r~~ls~l 243 (512)
T TIGR01117 218 VSGVAHFIAEDDDDCIMLIRRLLSFL 243 (512)
T ss_pred ccceeEEecCChHHHHHHHHHHHHhC
Confidence 57999999854 44555555554443
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.04 Score=62.13 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=36.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5899999999999999999999999999999999877654
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.079 Score=61.55 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=60.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
.+|-|+|.|.+|..+|+.|.+.|++|+++|.|+++.+++.+. ...+-.|-.+..+.- ....+++|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~L----------~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEEIM----------QLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHHH----------HhcCcccc
Confidence 579999999999999999999999999999999988775321 000011111111000 00246799
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
|.||.+++++.+...- ...+.+..+.-.|++
T Consensus 483 ~~viv~~~~~~~~~~i-v~~~~~~~~~~~iia 513 (558)
T PRK10669 483 RWLLLTIPNGYEAGEI-VASAREKRPDIEIIA 513 (558)
T ss_pred CEEEEEcCChHHHHHH-HHHHHHHCCCCeEEE
Confidence 9999999877654322 233344444334554
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.097 Score=56.51 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=30.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.||.|||+|.+|+.+|..|+++|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 479999999999999999999998 899999874
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=60.90 Aligned_cols=97 Identities=20% Similarity=0.134 Sum_probs=62.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
.+|.|+|.|.+|..+++.|.+.|++|+++|.|+++++.+.+. ...+-.|-.+..+.-+ ...+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~----------~agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLELLR----------AAGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHH----------hcCCccC
Confidence 479999999999999999999999999999999988875321 0000011111100000 0346899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
|.||.+++++... ..+...+.+..+.-.|++-
T Consensus 466 ~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 466 EAIVITCNEPEDT-MKIVELCQQHFPHLHILAR 497 (601)
T ss_pred CEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEE
Confidence 9999999865443 3344445555555556653
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.046 Score=57.41 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=36.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
++|.|+|+|-.+++++..|++.|. +|+++||+.++.+...+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 579999999999999999999997 79999999988776543
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.089 Score=53.55 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=80.9
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhh-------------c
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-------------M 375 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~-------------~ 375 (733)
||.|||+|..|+.+++.|+..|. +++++|.|.=...... ++.+-..-+-|+-..+.+.+.+. +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLn---RQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLN---RQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhc---cccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 58999999999999999999997 7888887642211110 00000000111111111111111 1
Q ss_pred cccccC--ccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec-CCCCCHHHHhcccCCCCcEEEEecCCCCCC
Q 004726 376 LKGVLD--YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN-TSTIDLNIVGEKTSSQDRIIGAHFFSPAHV 452 (733)
Q Consensus 376 i~~~~~--~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~-tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~ 452 (733)
+....+ .+.+++.|+||.|+- +.+. +..+.+..... +..++.. +.+..- ...-..+....+...++..+...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~G-~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFKG-NAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCce-EEEEEcCCCCCCcccCCCCCCCC
Confidence 100011 134688999999974 4554 33334332222 2333332 222221 11111111122333344444445
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHH
Q 004726 453 MPLLEIVRTERTSAQVILDLMTVGK 477 (733)
Q Consensus 453 ~~lveiv~~~~t~~e~~~~~~~l~~ 477 (733)
.|...+-..+.+.+..++.++.++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 5777777778888888888888875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.14 Score=57.87 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=37.1
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
.++|.|+|+|.+|..++..|.+.|++|+++|.+++..+...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 46899999999999999999999999999999999877643
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.076 Score=47.83 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=54.0
Q ss_pred ceEEEEc----CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG----~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
++|+||| -+..|.-+...|.+.|++|+.++...+.+ ..+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 5799999 58889999999999999999998765322 12334445543
Q ss_pred c-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEE
Q 004726 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 385 l-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii 419 (733)
. ...|+++.++| ++...++++++.+.- ...++
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~g-~~~v~ 84 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAALG-VKAVW 84 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHHT--SEEE
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHcC-CCEEE
Confidence 4 78999999999 887888888877653 33444
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.044 Score=45.61 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.6
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (733)
||.|||+|..|.-+|..|++.|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987655
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.053 Score=57.32 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=31.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCe-eEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e 342 (733)
+++.|+|+|-+|.+++..|+..|.+ |++++|+++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 4688999999999999999999986 999999973
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.055 Score=52.15 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=32.5
Q ss_pred cceEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 308 VRKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 308 ~~kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
+.|+++| |. --+|.+|++.|+++|++|.+.|++.+.++...
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata 55 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA 55 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH
Confidence 3456655 54 46899999999999999999999988666543
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.084 Score=57.10 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=56.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeEE-EeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHH-HHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~~-~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~i~~~~~~-~~ 384 (733)
.||+|+|+|.||..++..+... +++|+. .|++++..+...+.. .+. -.+... .... -.-..+....++ +.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~---~~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYP---LYVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCC---ccccCc-cccccccCCceEEcCChhHh
Confidence 4899999999999999988764 577664 465554333221110 000 000000 0000 000123333344 44
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
+.++|+||+|.|.. .-.+... .+++.++.++++++.
T Consensus 76 ~~~vDVVIdaT~~~--~~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGG--VGAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCch--hhHHHHH---HHHHCCCEEEEcCCC
Confidence 57899999999843 3334333 333455666666664
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.067 Score=58.59 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=52.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
++++|||+|.++......++.- .+ +|.+|+|+++++++..+++...+. +. ..+...++. ++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~ea 220 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEEV 220 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHHH
Confidence 5799999999999999988763 23 899999999998876554322110 00 013334455 67
Q ss_pred cCCCCEEEEecc
Q 004726 385 FKDVDMVIEAVI 396 (733)
Q Consensus 385 l~~aDlVI~avp 396 (733)
+++||+|+.|.+
T Consensus 221 v~~ADIVvtaT~ 232 (379)
T PRK06199 221 VRGSDIVTYCNS 232 (379)
T ss_pred HcCCCEEEEccC
Confidence 899999999886
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.1 Score=57.26 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=51.0
Q ss_pred ceEEEEcCCcCcHHHH-HHHHH-----CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIA-TAHIL-----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA-~~l~~-----~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|..+.+-- ..+.. .+.++.++|+++++++.. ....+++++.-..+ -++..++|.
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~~--------~kv~~ttd~ 71 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGAP--------VKVEATTDR 71 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEecCH
Confidence 4899999998776532 22222 256899999999998733 33334444432221 246677787
Q ss_pred -cccCCCCEEEEec
Q 004726 383 -SEFKDVDMVIEAV 395 (733)
Q Consensus 383 -~~l~~aDlVI~av 395 (733)
+++++||+||.++
T Consensus 72 ~eAl~gAdfVi~~~ 85 (442)
T COG1486 72 REALEGADFVITQI 85 (442)
T ss_pred HHHhcCCCEEEEEE
Confidence 8899999999888
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.027 Score=62.64 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
|.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999975
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.23 Score=47.28 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=29.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV 339 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~ 339 (733)
++|.|||+|.+|...+..|.+.|++|++++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 5899999999999999999999999999964
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.29 Score=55.64 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=33.1
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 3468999999999999999999999999999987543
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.92 Score=47.79 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=55.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCC-HHHHHHHhhccccccCcccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l 385 (733)
-||+|||+|.+|...+..+.+. +.+++ ++|+++++...... .+.|.-. ....+..+. ...+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 4799999999999988777754 56655 77898875321111 1112110 011111111 0124
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
.+.|+|+++.|. ..-.+.... ..+.++.++++++..
T Consensus 69 ~dIDiVf~AT~a--~~H~e~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSA--GAHVRHAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCH--HHHHHHHHH---HHHcCCeEEECCccc
Confidence 679999999984 333333333 345677777777744
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.46 Score=48.30 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=101.8
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004726 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (733)
Q Consensus 15 i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (733)
++...++-. -.-.+..-.-+.|..+++.+..+ .+.+|+++.+|+ +-..|-.- ..-++.. ....+ .+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG-----ARMQEg~l-----SLMQMak-tsaAl-~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG-----ARMQEGIL-----SLMQMAK-TSAAL-KR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc-----hhHhHHHH-----HHHHHHH-HHHHH-HH
Confidence 444444433 24667777788899999888765 478888887664 21111000 0001111 11233 45
Q ss_pred HhcCCCcEEEEeCCcccch-hhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH
Q 004726 94 IEDCKKPIVAAVEGLALGG-GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (733)
Q Consensus 94 i~~~~kp~Iaav~G~a~Gg-G~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~ 172 (733)
+.....|.|+++..+..|| ...+++..|+.||-+.|.+||..-++= -+.+...++.. --+++
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-------EQTire~LPeg----------fQ~aE 253 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-------EQTIREKLPEG----------FQTAE 253 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-------hhhhcccCCcc----------hhhHH
Confidence 7788999999999999988 469999999999999998887543210 01111111111 22677
Q ss_pred HHHHcCCccEEcCcchHHHHHHHHHHHHHccC
Q 004726 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (733)
Q Consensus 173 eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~ 204 (733)
-.++.|+||.||+..++......+...+...+
T Consensus 254 fLlehG~iD~iv~R~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 254 FLLEHGMIDMIVHRDELRTTLASLLAKLTPQP 285 (294)
T ss_pred HHHHcCCceeeecHHHHHHHHHHHHHHhCCCC
Confidence 88899999999999888877666665554443
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.068 Score=57.72 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (733)
.+|+|||+|-.|+.++..|++.|. +++++|-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 379999999999999999999997 89999976
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.089 Score=46.27 Aligned_cols=72 Identities=19% Similarity=0.413 Sum_probs=49.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc-Cc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~l~ 386 (733)
++|.|||.|.+|..=++.|++.|.+|+++..+.+..+ + .+.... .+ +.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~------------~i~~~~~~~~~~l~ 59 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------G------------LIQLIRREFEEDLD 59 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------T------------SCEEEESS-GGGCT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------h------------HHHHHhhhHHHHHh
Confidence 5899999999999999999999999999999861111 1 111111 11 5688
Q ss_pred CCCEEEEeccCChHHHHHHHHHH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSEL 409 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l 409 (733)
++|+||.|. ++..+.+.+.+..
T Consensus 60 ~~~lV~~at-~d~~~n~~i~~~a 81 (103)
T PF13241_consen 60 GADLVFAAT-DDPELNEAIYADA 81 (103)
T ss_dssp TESEEEE-S-S-HHHHHHHHHHH
T ss_pred hheEEEecC-CCHHHHHHHHHHH
Confidence 999999775 4677666665544
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.041 Score=60.60 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=32.9
Q ss_pred eEEEEcCCcCcHHH-HHHHHHCCCeeEEEeCChHHHHHH
Q 004726 310 KVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 310 kI~VIG~G~mG~~i-A~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
||.++|+|.||++. ...|.+.|++|+++|++++.++..
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 79999999999855 888889999999999988866654
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.14 Score=55.54 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=57.4
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHC-CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc--c
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S 383 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~ 383 (733)
|.||+|||+ |.+|..++..|.+. +++++.+-.+.+..+...+ .. +.+. .. .... .++. .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~~------~~~~-----~~-~~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----VH------PHLR-----GL-VDLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----hC------cccc-----cc-cCce-eecCCHH
Confidence 368999997 99999999999886 6777654333322111110 00 0000 00 0001 1111 2
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
...++|+|+.|+|... -.++..++ ...++.|+++++...+.
T Consensus 65 ~~~~vD~Vf~alP~~~--~~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGV--SMDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHH--HHHHHHHH---HhCCCEEEECCcccCCC
Confidence 4568999999999543 33444433 34678888988877663
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.22 Score=51.41 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=34.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57999987 9999999999999999999999998766554
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.074 Score=56.05 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=31.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~ 343 (733)
+++.|||+|-.+++++..++..|. +|++++|+++.
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~ 160 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF 160 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccH
Confidence 479999999999999999999996 89999999653
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.14 Score=47.72 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=53.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|+|- ...|.++|..|.+.|.+|+..+.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 58999998 56699999999999999999986543222 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.++.-..-++. +.+++++++++...
T Consensus 72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg~ 101 (140)
T cd05212 72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCSP 101 (140)
T ss_pred CCEEEEecCCCCccCH-------HHcCCCCEEEEcCC
Confidence 9999999975433333 34789998875443
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.12 Score=53.95 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=26.0
Q ss_pred ceEEEEc-CCcCcHHHHHHHHH-CCCeeE-EEeCC
Q 004726 309 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN 340 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~-~G~~V~-~~d~~ 340 (733)
.||+|+| +|.||..++..+.+ .+++++ ++|+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4899999 59999999999986 478766 56743
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.14 Score=55.64 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=35.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
+|.|+|+|.||.-.++.+...|. +|++.|+++++++.+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 79999999999999888888885 78888999999998754
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.11 Score=54.18 Aligned_cols=39 Identities=21% Similarity=0.021 Sum_probs=34.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+|-.+++++..|++.|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 379999999999999999999997 599999999877654
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=52.63 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=34.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|..++..|++.|++|++.+++++.....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 57889987 9999999999999999999999998765543
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.13 Score=48.11 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=29.4
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999873
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.098 Score=49.82 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=47.9
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-+ ..|.+++..|.+.|..|++.+...+.++ +.+++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 589999996 6899999999999999999887653332 23578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
||+||.++.-.--++ ...+++++++++....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CE
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCCc
Confidence 999999997332222 2357899988765443
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.13 Score=53.56 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=52.5
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-| ..|.++|..|.+.|..|+++......+. +.+++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 589999998 8899999999999999999865433221 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.|+.-.--+.. ..+++++++++..
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDvG 229 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDIG 229 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEEEee
Confidence 9999999963222222 3468999887644
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.25 Score=58.03 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=60.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|-|+|.|.+|..+|+.|.+.|++++++|.|+++++.+.+. ...+-.|-.+..+.-. ...+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~----------~agi~~A 465 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLE----------SAGAAKA 465 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHHHH----------hcCCCcC
Confidence 579999999999999999999999999999999998876321 0000011111000000 0346789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
|+||.++.++.. ...+...+.+..+.-.|++
T Consensus 466 ~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 466 EVLINAIDDPQT-SLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEE
Confidence 999999965443 3334344444444444554
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.099 Score=53.07 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCe---eEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~---V~~~d~~ 340 (733)
+||.|+|+|.+|.++|..|...|.+ |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4799999999999999999999974 9999999
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.14 Score=54.09 Aligned_cols=87 Identities=24% Similarity=0.263 Sum_probs=61.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+++.|.|-|..|.++|..+...|.+|+++++||-.+-++ .++.....+-.++++.+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 467788999999999999999999999999999653322 22334444444677889
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
|++|.+.-..--+..+-+. .+++++|++ |..
T Consensus 266 DifiT~TGnkdVi~~eh~~----~MkDgaIl~-N~G 296 (420)
T COG0499 266 DIFVTATGNKDVIRKEHFE----KMKDGAILA-NAG 296 (420)
T ss_pred CEEEEccCCcCccCHHHHH----hccCCeEEe-ccc
Confidence 9999998644444333333 467888775 554
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.2 Score=49.00 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=56.2
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc--cC----
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD---- 381 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 381 (733)
++|.|||-+ ..|.++|..|.+.|..|+++|++--..-. +.+.+. . +.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~~---------h-s~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESIR---------H-EKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------cccccc---------c-ccccccchhhH
Confidence 589999985 56999999999999999999865432210 000000 0 001 11
Q ss_pred c-cccCCCCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 382 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 382 ~-~~l~~aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
+ +.+++||+||.|++-.-- ++.+ .+++++++++....
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~d-------~ik~GavVIDVGi~ 158 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPTE-------LLKDGAICINFASI 158 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCHH-------HcCCCcEEEEcCCC
Confidence 2 467999999999973322 3333 46799998875544
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.17 Score=57.68 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCCCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 295 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 295 ~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
.|+...++.. .+-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus 4 ~~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 4 PPGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred ccchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4444444442 2346899999999999999999999999999997653
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.13 Score=52.58 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=55.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-----------CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcc-
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML- 376 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i- 376 (733)
.||.|||+|-.|+.++..|++.| .+++++|.|.=..... .+.+-...+-|.-..+.+.+.+..+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL----nRQlf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV----GRQAFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh----hcccCChhHCCcHHHHHHHHHHHhcc
Confidence 47999999999999999999874 2899999764221111 0001001112222222222222221
Q ss_pred --ccc--c----CccccCCCCEEEEeccCChHHHHHHHHHHHH
Q 004726 377 --KGV--L----DYSEFKDVDMVIEAVIESVPLKQKIFSELEK 411 (733)
Q Consensus 377 --~~~--~----~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~ 411 (733)
.+. . ..+.+.++|+||.|+ ++...+..+.+....
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCV-DNRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 110 0 012356799999998 477777777666544
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.11 Score=51.20 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHh--CHHHHHHH----HHHHHHHhCC
Q 004726 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV--GANYVYTS----LKKWSQLYGN 692 (733)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~--G~d~~~~~----~~~~~~~~~~ 692 (733)
.||..||+.++++||.-+++..|+. +..|+|.+|-.|+|..-.--||++.+..- |+....++ ..+..+.+|+
T Consensus 188 ~Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HLNA~Gv~dYf~Rys~~I~aV~~t~Gp 265 (313)
T KOG2305|consen 188 LGFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHLNAEGVADYFKRYSAGITAVLKTMGP 265 (313)
T ss_pred ccceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhcCcHHHHHHHHHhhhhHHHHHHHcCC
Confidence 4789999999999999999999999 79999999999999655556999977643 54333222 2233455665
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.48 Score=47.68 Aligned_cols=127 Identities=21% Similarity=0.196 Sum_probs=74.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH-HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc---Cccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~ 384 (733)
++|.|||.|.++..=+..|++.|.+|+++..+-. .+.. +.+.|. +.+.. ..+.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~------------i~~~~r~~~~~d 82 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGN------------LKLIKGNYDKEF 82 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCC------------EEEEeCCCChHH
Confidence 3799999999999999999999999999965432 1111 122232 22211 1256
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCC--CCCCeeEEecCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE 462 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~--~~~~lveiv~~~ 462 (733)
+.++++||.|+ +|.++-+.+.+. +....+++.+...... ..|..|. ...+++-.|.+.
T Consensus 83 l~g~~LViaAT-dD~~vN~~I~~~----a~~~~~lvn~vd~p~~---------------~dFi~PAiv~rg~l~IaIST~ 142 (223)
T PRK05562 83 IKDKHLIVIAT-DDEKLNNKIRKH----CDRLYKLYIDCSDYKK---------------GLCIIPYQRSTKNFVFALNTK 142 (223)
T ss_pred hCCCcEEEECC-CCHHHHHHHHHH----HHHcCCeEEEcCCccc---------------CeEEeeeEEecCCEEEEEECC
Confidence 88999999886 477776666553 3332233222211110 1233332 334555556666
Q ss_pred CCCHHHHHHHHHHHHH
Q 004726 463 RTSAQVILDLMTVGKI 478 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~ 478 (733)
..+|.....++.-++.
T Consensus 143 G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 143 GGSPKTSVFIGEKVKN 158 (223)
T ss_pred CcCcHHHHHHHHHHHH
Confidence 6677766666655554
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.21 Score=50.78 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.||.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 479999999999999999999997 788987654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.13 Score=53.55 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=52.7
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-|. .|.++|..|.+.|.+|+++......++ +.+++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 5799999987 899999999999999999986532221 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.++.-.--++. ..+++++++++..
T Consensus 203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence 9999999941122221 5678999887644
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.14 Score=51.94 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|+|+ |.+|..++..|++.|++|++.++++++++...
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 57888886 99999999999999999999999987766543
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.2 Score=44.55 Aligned_cols=131 Identities=23% Similarity=0.239 Sum_probs=80.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh-HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||.|..|.-=+..|++.|.+|+++..+. +.+.. +.+.+.+. .+.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~---------~~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIK---------WIEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcc---------hhhcccChhhhcC
Confidence 489999999999999999999999999998776 22222 23333221 1111122255667
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCC--CCCCeeEEecCCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~--~~~~lveiv~~~~t~ 465 (733)
+++||.|+. |.++.+.+++...+. .+++ |...- |+. ++|+.|. ...++.-.|.+...+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D~-----------p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVDD-----------PEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccCC-----------ccc---CceecceeeccCCeEEEEECCCCC
Confidence 999998875 777777776654443 2332 22211 111 2333333 344566666777778
Q ss_pred HHHHHHHHHHHHHc
Q 004726 466 AQVILDLMTVGKII 479 (733)
Q Consensus 466 ~e~~~~~~~l~~~l 479 (733)
|.....++.-++.+
T Consensus 133 P~la~~ir~~Ie~~ 146 (210)
T COG1648 133 PVLARLLREKIEAL 146 (210)
T ss_pred hHHHHHHHHHHHHH
Confidence 87777776666553
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.24 Score=50.32 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=30.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 479999999999999999999997 899999764
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.49 Score=53.98 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=31.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 58999999999999999999999999999987654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.15 Score=54.01 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=35.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 57888887 999999999999999999999999887766543
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.22 Score=51.79 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=54.2
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-+ ..|.++|..|.+.|..|+.+..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 479999998 8899999999999999999987654332 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.|++-..-++. ..+++++++++...
T Consensus 196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi 225 (279)
T PRK14178 196 ADILVSAAGKAGFITP-------DMVKPGATVIDVGI 225 (279)
T ss_pred CCEEEECCCcccccCH-------HHcCCCcEEEEeec
Confidence 9999999972222222 23689998876543
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.19 Score=48.26 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=50.2
Q ss_pred CCcceEEEEcCCcCcHHHHHH-H-HHCCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 306 RGVRKVAVIGGGLMGSGIATA-H-ILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~-l-~~~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.++.+|.|||+|++|.+++.. + .++|++++ ++|.+++.+-.-. +.+.-.+. +++
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~-------------~~v~V~~~----------d~l 138 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI-------------GDVPVYDL----------DDL 138 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCccc-------------CCeeeech----------HHH
Confidence 356799999999999999843 2 35677655 8899998654311 10111111 111
Q ss_pred -cccC--CCCEEEEeccCChHHHHHHHHHHHH
Q 004726 383 -SEFK--DVDMVIEAVIESVPLKQKIFSELEK 411 (733)
Q Consensus 383 -~~l~--~aDlVI~avpe~~~~k~~v~~~l~~ 411 (733)
.-++ +.|+.|+||| .+.-|++...|.+
T Consensus 139 e~~v~~~dv~iaiLtVP--a~~AQ~vad~Lv~ 168 (211)
T COG2344 139 EKFVKKNDVEIAILTVP--AEHAQEVADRLVK 168 (211)
T ss_pred HHHHHhcCccEEEEEcc--HHHHHHHHHHHHH
Confidence 1122 7899999999 5555566555543
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.24 Score=54.85 Aligned_cols=162 Identities=14% Similarity=0.066 Sum_probs=81.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC------eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcc----c--
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML----K-- 377 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~------~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i----~-- 377 (733)
||.|||+|.+|..+++.|+..|. +++++|.+.-...... ++.+-..-+-|.-..+.+.+.+..+ .
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLn---RQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLN---RQFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccC---cCccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 58999999999999999999998 8999997642211100 0000000011111111111111111 0
Q ss_pred cc--------c---CccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHhcccCCCCcEEEEe
Q 004726 378 GV--------L---DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVGEKTSSQDRIIGAH 445 (733)
Q Consensus 378 ~~--------~---~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~~~~~~~~~~ig~h 445 (733)
.. . +.+-+++.|+||.|+- +.+.+..+-+..... +. +|-+.+.+..- ...-..+.....-...
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~---~iPli~~gt~G~~G-~v~v~iP~~te~y~~~ 152 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYY---RKPLLESGTLGTKG-NTQVVIPHLTESYSSS 152 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEeccccee-EEEEEeCCCCCCccCC
Confidence 00 0 0123578999999974 555544443332222 22 23333332211 1111111111111222
Q ss_pred cCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHc
Q 004726 446 FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479 (733)
Q Consensus 446 ~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~l 479 (733)
...+....|..++-.-+...+..+++++.+++.+
T Consensus 153 ~~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l 186 (435)
T cd01490 153 RDPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL 186 (435)
T ss_pred CCCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence 2223344566777777888899999999998875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.2 Score=47.07 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=55.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+|+|+|+|-+|.+-.+.+..+|. .++.+|+++++++.+++- -....+.+.+.......+.-.++ .++
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f--------GAT~~vn~~~~~~vv~~i~~~T~----gG~ 255 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF--------GATHFVNPKEVDDVVEAIVELTD----GGA 255 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc--------CCceeecchhhhhHHHHHHHhcC----CCC
Confidence 69999999999999999999986 789999999999887431 11111222211111112221111 279
Q ss_pred CEEEEeccCChHHHHHHHHHH
Q 004726 389 DMVIEAVIESVPLKQKIFSEL 409 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l 409 (733)
|.+|+|+- +..+.+.-++-.
T Consensus 256 d~~~e~~G-~~~~~~~al~~~ 275 (366)
T COG1062 256 DYAFECVG-NVEVMRQALEAT 275 (366)
T ss_pred CEEEEccC-CHHHHHHHHHHH
Confidence 99999996 444444444433
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.19 Score=52.43 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=35.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46888887 89999999999999999999999998876543
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.2 Score=50.92 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=35.1
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
.++|.|.|+ |.+|..++..|++.|++|++++++++..+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 367999987 9999999999999999999999998776554
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.7 Score=52.10 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=31.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 589999999999999999999999999999986
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.2 Score=51.75 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=36.6
Q ss_pred ceEEEEcC-C-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VIG~-G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+++.|.|+ | .+|.+++..|++.|++|++.+++++.++...+.+
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 57889997 6 6999999999999999999999988877665443
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.13 Score=56.59 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (733)
++|.|||+|..|+.++..|++.|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 369999999999999999999998 79999998
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.24 Score=50.56 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=35.2
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 47899987 99999999999999999999999998766543
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.058 Score=58.67 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 479999999999999999999997 799999875
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.22 Score=53.25 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~ 69 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG 69 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 46788887 8999999999999999999999998877665443
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.073 Score=58.16 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (733)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 379999999999999999999997 89999987
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.43 Score=54.61 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=35.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
+.|.|.|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 35778887 999999999999999999999999988765543
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.21 Score=51.67 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=34.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
+.+.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEA 50 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 35667777 789999999999999999999999988776544
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.21 Score=52.38 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=35.0
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|+++|++.+.++...+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVA 48 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 57888876 899999999999999999999999877665433
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.18 Score=59.49 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=28.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~ 341 (733)
.||+|||+| .|+.+|..|++.|. +++++|.|.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 379999999 89999999999995 899998764
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.26 Score=51.44 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=52.5
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-+. .|.++|..|.+.|.+|++++.....+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 5799999987 899999999999999999985432211 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.|+.-.--++ ...+++++++++..+
T Consensus 208 ADIvv~AvG~p~~i~-------~~~vk~gavVIDvGi 237 (287)
T PRK14176 208 ADILVVATGVKHLIK-------ADMVKEGAVIFDVGI 237 (287)
T ss_pred CCEEEEccCCccccC-------HHHcCCCcEEEEecc
Confidence 999999875222122 235789999886554
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.52 Score=47.74 Aligned_cols=41 Identities=27% Similarity=0.287 Sum_probs=35.4
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+++.|++.|++|++.+++++.++...+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57889987 889999999999999999999999887665433
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.15 Score=52.62 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=35.1
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
|++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 367889986 9999999999999999999999998876654
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.23 Score=53.93 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=57.4
Q ss_pred eEEEEcC-CcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-cCc-cc
Q 004726 310 KVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-SE 384 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 384 (733)
||+|||+ |.+|..+++.|.+. +++++ +++.+...-+... ..+ +.+.. . ....+. .+. +.
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~----~~~------~~l~~-----~-~~~~~~~~~~~~~ 65 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS----EVH------PHLRG-----L-VDLNLEPIDEEEI 65 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH----HhC------ccccc-----c-CCceeecCCHHHh
Confidence 7999999 99999999999977 66877 5566543211110 000 00000 0 001111 122 23
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
+.++|+||.|+|.. .-.++..++. ..++.|+++++...+.
T Consensus 66 ~~~~DvVf~alP~~--~s~~~~~~~~---~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 66 AEDADVVFLALPHG--VSAELAPELL---AAGVKVIDLSADFRLK 105 (346)
T ss_pred hcCCCEEEECCCch--HHHHHHHHHH---hCCCEEEeCChhhhcC
Confidence 35899999999944 3344444443 4578888888866543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.2 Score=51.21 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=34.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56888887 9999999999999999999999998766554
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.22 Score=51.48 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=35.8
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL 44 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 6788887 88999999999999999999999998877654433
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.22 Score=51.28 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=29.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 489999999999999999999997 788998763
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.66 Score=52.87 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=98.3
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
|.-|+|.. -+++++-.+...+.+..+++ -++-+|.|.-. +.|..|-+-+ .........+++ .++.
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~E----------~~g~~~~ga~~~-~a~~ 364 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEAE----------RAGIIRAGARLL-YALA 364 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHHH----------HTTHHHHHHHHH-HHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchhh----------hcchHHHHHHHH-HHHH
Confidence 44466643 37999999999999998876 35777777543 3455443322 122344455667 6799
Q ss_pred cCCCcEEEEeCCcccchhhHHhhhc----CEEEEeCCceEeCccccCCCCCChhhhhhhcccc-------C--HHH-HHH
Q 004726 96 DCKKPIVAAVEGLALGGGLELAMGC----HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-------G--LSK-AIE 161 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalac----D~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~-------G--~~~-a~~ 161 (733)
++..|+|..|-|.+.|||......+ |+++|.++++++ .++.-+.+..+-+.- | ... ..+
T Consensus 365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~ 437 (493)
T PF01039_consen 365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQRAE 437 (493)
T ss_dssp HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHH
T ss_pred cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHHHH
Confidence 9999999999999999887555555 788777777776 444444443332211 1 000 111
Q ss_pred HH--HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 162 MM--LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 162 l~--ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
++ ..-+..++..+...|++|.|+++.+..........-+.
T Consensus 438 ~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~ 479 (493)
T PF01039_consen 438 KIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLW 479 (493)
T ss_dssp HHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHH
Confidence 11 11222588999999999999999998776665554433
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.48 Score=49.77 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=66.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc-Cc---
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY--- 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~--- 382 (733)
++|+.||+|..|.+-...++.. +-.++.+|++++.++.+++.+.+ +.+ + ..++.+.. |.
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g-L--------~~rV~F~~~Da~~~ 189 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD-L--------SKRMFFHTADVMDV 189 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC-c--------cCCcEEEECchhhc
Confidence 6899999999876544444333 34799999999999988654321 011 1 02233321 11
Q ss_pred -cccCCCCEEEEeccC--ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 383 -SEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 383 -~~l~~aDlVI~avpe--~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
....+.|+|+..+-= +..-++++++.+.+.+++|.+++.-+
T Consensus 190 ~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 190 TESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 235688999988621 23567899999999999998876544
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.22 Score=50.71 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=34.8
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++++.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 567888886 9999999999999999999999998765543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.29 Score=43.15 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=61.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHH--CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-cC----
Q 004726 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD---- 381 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~---- 381 (733)
.+|.-||+|. +.++..+++ .|.+|+.+|.+++.++.+.++.. +.+. ..++.+. .+
T Consensus 3 ~~vLDlGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~---------~~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGT--GRLSIALARLFPGARVVGVDISPEMLEIARERAA-------EEGL---------SDRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTT--SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHH-------HTTT---------TTTEEEEESCCHGG
T ss_pred CEEEEEcCcC--CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-------hcCC---------CCCeEEEECccccC
Confidence 4788999998 333344444 89999999999999998866541 1110 0122221 11
Q ss_pred ccccCCCCEEEEec-----cCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 382 YSEFKDVDMVIEAV-----IESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 382 ~~~l~~aDlVI~av-----pe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
.+.....|+|+..- .-..+..+.+++++.+.++|+..++.
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 23456789999866 21225567888999999988876654
|
... |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.24 Score=50.82 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=35.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..++..|++.|++|++++++++..+...+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 46 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAE 46 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 57889985 999999999999999999999999987766543
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.27 Score=49.47 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
++|+|.|.|.+|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 589999999999999999999988 556788877
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.26 Score=50.77 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=36.4
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+...+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE 50 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence 57888888 9999999999999999999999999877665443
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.36 Score=50.45 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.+|.|||+|-+|+.+|..|+.+|. +++++|-|.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 379999999999999999999997 788998864
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.25 Score=50.87 Aligned_cols=41 Identities=24% Similarity=0.143 Sum_probs=34.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAA 47 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46888876 899999999999999999999999877665433
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.21 Score=51.40 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=34.5
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 47 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAA 47 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 57899988 9999999999999999999999998765543
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.55 Score=49.80 Aligned_cols=98 Identities=22% Similarity=0.266 Sum_probs=59.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCe---eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~---V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
.+|||+|+ |..|.-+...|....+. +.++-.....-++..+ ..... + .-.....+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f~~~~-~---------~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------FGGKS-I---------GVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------ccCcc-c---------cCccccccccc
Confidence 48999988 99999999999997543 4444433322111100 00000 0 00111133456
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
.+++|+|+.|.+.+. -+++..++ .+.++++++|+|...+.
T Consensus 64 ~~~~Divf~~ag~~~--s~~~~p~~---~~~G~~VIdnsSa~Rm~ 103 (334)
T COG0136 64 FSDVDIVFFAAGGSV--SKEVEPKA---AEAGCVVIDNSSAFRMD 103 (334)
T ss_pred cccCCEEEEeCchHH--HHHHHHHH---HHcCCEEEeCCcccccC
Confidence 779999999998433 35555554 35689999999987654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.27 Score=50.47 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=35.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 47 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLES 47 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHH
Confidence 46888887 8999999999999999999999998887665443
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.22 Score=51.05 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=30.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e 342 (733)
.||.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 479999999999999999999996 7889888653
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.29 Score=50.78 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~ 341 (733)
.+|.|||+|.+|+.+|..|++.| -+++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 47999999999999999999999 4899999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 733 | ||||
| 2wtb_A | 725 | Arabidopsis Thaliana Multifuctional Protein, Mfp2 L | 0.0 | ||
| 3zw8_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 3e-90 | ||
| 2x58_A | 727 | The Crystal Structure Of Mfe1 Liganded With Coa Len | 3e-90 | ||
| 3zwb_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 1e-89 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 1e-78 | ||
| 1zcj_A | 463 | Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas | 6e-56 | ||
| 3k6j_A | 460 | Crystal Structure Of The Dehydrogenase Part Of Mult | 2e-44 | ||
| 3mog_A | 483 | Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge | 4e-40 | ||
| 3had_A | 308 | Biochemical Characterization And Structure Determin | 3e-32 | ||
| 1f0y_A | 302 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac | 3e-32 | ||
| 3hdh_A | 302 | Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge | 4e-32 | ||
| 1f12_A | 310 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- | 5e-32 | ||
| 1lso_A | 302 | Crystal Structure Of The S137a Mutant Of L-3-Hydrox | 7e-32 | ||
| 1lsj_A | 302 | Crystal Structure Of The E110q Mutant Of L-3-hydrox | 8e-32 | ||
| 1il0_A | 302 | X-Ray Crystal Structure Of The E170q Mutant Of Huma | 8e-32 | ||
| 1m76_A | 302 | Crystal Structure Of The S137c Mutant Of L-3-Hydrox | 1e-31 | ||
| 1m75_A | 302 | Crystal Structure Of The N208s Mutant Of L-3-Hydrox | 1e-31 | ||
| 3pea_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 6e-29 | ||
| 2hdh_A | 293 | Biochemical Characterization And Structure Determin | 3e-24 | ||
| 3rqs_A | 324 | Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh | 3e-24 | ||
| 3moy_A | 263 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 8e-18 | ||
| 4dyd_A | 283 | Substrate-Directed Dual Catalysis Of Dicarbonyl Com | 1e-17 | ||
| 1zej_A | 293 | Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog | 2e-16 | ||
| 4fzw_A | 258 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 1e-15 | ||
| 3pzk_A | 257 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-15 | ||
| 3q0j_A | 258 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-15 | ||
| 3h81_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 4e-15 | ||
| 1mj3_A | 260 | Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata | 7e-15 | ||
| 1ey3_A | 258 | Structure Of Enoyl-Coa Hydratase Complexed With The | 7e-15 | ||
| 1dub_A | 261 | 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph | 9e-15 | ||
| 2pbp_A | 258 | Crystal Structure Of Enoyl-Coa Hydrates Subunit I ( | 1e-14 | ||
| 3hrx_A | 254 | Crystal Structure Of Phenylacetic Acid Degradation | 2e-14 | ||
| 3kqf_A | 265 | 1.8 Angstrom Resolution Crystal Structure Of Enoyl- | 6e-14 | ||
| 2hw5_A | 286 | The Crystal Structure Of Human Enoyl-Coenzyme A (Co | 7e-14 | ||
| 2iex_A | 272 | Crystal Structure Of Dihydroxynapthoic Acid Synthet | 3e-12 | ||
| 4di1_A | 277 | Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro | 7e-12 | ||
| 3hin_A | 275 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 4e-11 | ||
| 3qka_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase Echa5 From | 9e-11 | ||
| 2ppy_A | 265 | Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F | 1e-10 | ||
| 3g64_A | 279 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 1e-10 | ||
| 1hzd_A | 272 | Crystal Structure Of Human Auh Protein, An Rna-Bind | 2e-10 | ||
| 3rsi_A | 265 | The Structure Of A Putative Enoyl-Coa HydrataseISOM | 2e-10 | ||
| 4els_A | 285 | Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co | 2e-10 | ||
| 3t88_A | 289 | Crystal Structure Of Escherichia Coli Menb In Compl | 2e-10 | ||
| 3trr_A | 256 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 3e-10 | ||
| 3p85_A | 270 | Crystal Structure Enoyl-Coa Hydratase From Mycobact | 2e-09 | ||
| 3sll_A | 290 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 3e-09 | ||
| 3h02_A | 288 | 2.15 Angstrom Resolution Crystal Structure Of Napht | 3e-09 | ||
| 2uzf_A | 273 | Crystal Structure Of Staphylococcus Aureus 1,4-Dihy | 5e-09 | ||
| 3qre_A | 298 | Crystal Structure Of An Enoyl-Coa Hydratase Echa12_ | 6e-09 | ||
| 3qyr_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M | 8e-09 | ||
| 1jxz_A | 269 | Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe | 1e-08 | ||
| 1nzy_A | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 2e-08 | ||
| 1nzy_B | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 2e-08 | ||
| 3qxz_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 4e-08 | ||
| 4fzw_C | 274 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 5e-08 | ||
| 3p5m_A | 255 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 8e-08 | ||
| 3pe8_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 9e-08 | ||
| 2vx2_A | 287 | Crystal Structure Of Human Enoyl Coenzyme A Hydrata | 1e-07 | ||
| 3q1t_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 1e-07 | ||
| 3qk8_A | 272 | Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro | 2e-07 | ||
| 2ej5_A | 257 | Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr | 5e-07 | ||
| 4eml_A | 275 | Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy | 6e-07 | ||
| 4f47_A | 278 | The Structure Of Enoyl-Coa Hydratase Echa19 From My | 1e-06 | ||
| 3r0o_A | 273 | Crystal Structure Of Carnitinyl-Coa Hydratase From | 2e-06 | ||
| 3r9q_A | 262 | Structure Of A Probable Enoyl-Coa HydrataseISOMERAS | 4e-06 | ||
| 4hc8_A | 255 | Crystal Structure Of Probable Enoyl-Coa Hydratase E | 7e-06 | ||
| 3r9t_A | 267 | Structure Of Echa1_1 From Mycobacterium Paratubercu | 8e-06 | ||
| 1sg4_A | 260 | Crystal Structure Of Human Mitochondrial Delta3-del | 8e-06 | ||
| 3isa_A | 254 | Crystal Structure Of Putative Enoyl-Coa HydrataseIS | 9e-06 | ||
| 3r9s_A | 267 | Structure Of A Carnitinyl-Coa Dehydratase From Myco | 1e-05 | ||
| 3swx_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 1e-05 | ||
| 2vre_A | 296 | Crystal Structure Of Human Peroxisomal Delta3,5, De | 2e-05 | ||
| 3qmj_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr | 2e-05 | ||
| 1wz8_A | 264 | Crystal Structure Of Probable Enoyl-Coa Dehydratase | 2e-05 | ||
| 3lke_A | 263 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 6e-05 | ||
| 3l3s_A | 263 | Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS | 6e-05 | ||
| 3f3s_A | 313 | The Crystal Structure Of Human Lambda-Crystallin, C | 7e-05 | ||
| 2a7k_A | 250 | Carboxymethylproline Synthase (carb) From Pectobact | 1e-04 | ||
| 3he2_A | 264 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 1e-04 | ||
| 3oc7_A | 267 | Crystal Structure Of An Enoyl-Coa Hydratase From My | 2e-04 | ||
| 3r6h_A | 233 | Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) | 2e-04 | ||
| 1dci_A | 275 | Dienoyl-Coa Isomerase Length = 275 | 2e-04 | ||
| 1uiy_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase From Therm | 2e-04 | ||
| 3ome_A | 282 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 2e-04 | ||
| 3h0u_A | 289 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 2e-04 | ||
| 2fbm_A | 291 | Acetyltransferase Domain Of Cdy1 Length = 291 | 3e-04 | ||
| 1ef8_A | 261 | Crystal Structure Of Methylmalonyl Coa Decarboxylas | 4e-04 | ||
| 1xx4_A | 261 | Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co | 4e-04 | ||
| 3i47_A | 268 | Crystal Structure Of Putative Enoyl Coa HydrataseIS | 5e-04 | ||
| 2vsu_F | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 5e-04 | ||
| 2vss_F | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 5e-04 | ||
| 3bpt_A | 363 | Crystal Structure Of Human Beta-Hydroxyisobutyryl-C | 5e-04 | ||
| 2vss_E | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 5e-04 | ||
| 2j5i_B | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 5e-04 | ||
| 2j5i_I | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 5e-04 | ||
| 2vsu_E | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 5e-04 | ||
| 2vsu_C | 275 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 6e-04 | ||
| 2vsu_A | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 6e-04 | ||
| 2fw2_A | 260 | Catalytic Domain Of Cdy Length = 260 | 6e-04 | ||
| 2j5i_A | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 7e-04 | ||
| 4hdt_A | 353 | Crystal Structure Of A Carnitinyl-Coa Dehydratase F | 9e-04 |
| >pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725 | Back alignment and structure |
|
| >pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742 | Back alignment and structure |
|
| >pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727 | Back alignment and structure |
|
| >pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
| >pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463 | Back alignment and structure |
|
| >pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460 | Back alignment and structure |
|
| >pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483 | Back alignment and structure |
|
| >pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308 | Back alignment and structure |
|
| >pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302 | Back alignment and structure |
|
| >pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302 | Back alignment and structure |
|
| >pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310 | Back alignment and structure |
|
| >pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302 | Back alignment and structure |
|
| >pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261 | Back alignment and structure |
|
| >pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293 | Back alignment and structure |
|
| >pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324 | Back alignment and structure |
|
| >pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263 | Back alignment and structure |
|
| >pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283 | Back alignment and structure |
|
| >pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293 | Back alignment and structure |
|
| >pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258 | Back alignment and structure |
|
| >pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257 | Back alignment and structure |
|
| >pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258 | Back alignment and structure |
|
| >pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278 | Back alignment and structure |
|
| >pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260 | Back alignment and structure |
|
| >pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258 | Back alignment and structure |
|
| >pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261 | Back alignment and structure |
|
| >pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258 | Back alignment and structure |
|
| >pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254 | Back alignment and structure |
|
| >pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265 | Back alignment and structure |
|
| >pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286 | Back alignment and structure |
|
| >pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272 | Back alignment and structure |
|
| >pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277 | Back alignment and structure |
|
| >pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275 | Back alignment and structure |
|
| >pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261 | Back alignment and structure |
|
| >pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265 | Back alignment and structure |
|
| >pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279 | Back alignment and structure |
|
| >pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272 | Back alignment and structure |
|
| >pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265 | Back alignment and structure |
|
| >pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285 | Back alignment and structure |
|
| >pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289 | Back alignment and structure |
|
| >pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256 | Back alignment and structure |
|
| >pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270 | Back alignment and structure |
|
| >pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290 | Back alignment and structure |
|
| >pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288 | Back alignment and structure |
|
| >pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273 | Back alignment and structure |
|
| >pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298 | Back alignment and structure |
|
| >pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269 | Back alignment and structure |
|
| >pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274 | Back alignment and structure |
|
| >pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255 | Back alignment and structure |
|
| >pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256 | Back alignment and structure |
|
| >pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287 | Back alignment and structure |
|
| >pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278 | Back alignment and structure |
|
| >pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272 | Back alignment and structure |
|
| >pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257 | Back alignment and structure |
|
| >pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275 | Back alignment and structure |
|
| >pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278 | Back alignment and structure |
|
| >pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273 | Back alignment and structure |
|
| >pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262 | Back alignment and structure |
|
| >pdb|4HC8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase Echa3 (Rv0632c, Nysgrc-019494) From Mycobacterium Tuberculosis H37rv Length = 255 | Back alignment and structure |
|
| >pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267 | Back alignment and structure |
|
| >pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260 | Back alignment and structure |
|
| >pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254 | Back alignment and structure |
|
| >pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267 | Back alignment and structure |
|
| >pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296 | Back alignment and structure |
|
| >pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256 | Back alignment and structure |
|
| >pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From Thermus Thermophilus Hb8 Length = 264 | Back alignment and structure |
|
| >pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263 | Back alignment and structure |
|
| >pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263 | Back alignment and structure |
|
| >pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313 | Back alignment and structure |
|
| >pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250 | Back alignment and structure |
|
| >pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264 | Back alignment and structure |
|
| >pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267 | Back alignment and structure |
|
| >pdb|3R6H|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) From Mycobacterium Marinum Length = 233 | Back alignment and structure |
|
| >pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275 | Back alignment and structure |
|
| >pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253 | Back alignment and structure |
|
| >pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282 | Back alignment and structure |
|
| >pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289 | Back alignment and structure |
|
| >pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291 | Back alignment and structure |
|
| >pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261 | Back alignment and structure |
|
| >pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261 | Back alignment and structure |
|
| >pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268 | Back alignment and structure |
|
| >pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363 | Back alignment and structure |
|
| >pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275 | Back alignment and structure |
|
| >pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276 | Back alignment and structure |
|
| >pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260 | Back alignment and structure |
|
| >pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 867 bits (2243), Expect = 0.0
Identities = 417/711 (58%), Positives = 535/711 (75%), Gaps = 1/711 (0%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
+ MEVG DGVA+ITLINPPVN+L+ ++ LK +EEA SR+DVKAIV+TG GR
Sbjct: 4 RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGR 63
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
FSGGFDI+ F ++ S++++ +L+E +KP VAA++GLALGGGLELAM
Sbjct: 64 FSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMA 123
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
CHARI+AP QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG LGL
Sbjct: 124 CHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGL 183
Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239
IDAVV EL+ +R WALDI RRKPW+ S+ +TDKL L EARE+L A+ Q K AP
Sbjct: 184 IDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAP 243
Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
NM CLD IE GIV G +G+ KEA+V ++V LDT++GL+HVFF+QR T+KVP VT
Sbjct: 244 NMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVT 303
Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 359
D GL PR ++KVA+IGGGLMGSGIATA IL+N V+LKEVN ++L GI ++AN++ V
Sbjct: 304 DRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRV 363
Query: 360 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419
+G ++Q+K + +LKG LDY F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCIL
Sbjct: 364 RKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCIL 423
Query: 420 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479
A+NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT TSAQVI+DL+ VGK I
Sbjct: 424 ASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKI 483
Query: 480 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAG 539
KK PVVVGNCTGFAVNR FFPY+Q+A LV G D + ID AI FG+P+GPF+L DL G
Sbjct: 484 KKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVG 543
Query: 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPI 599
+GVA AT+ +F + F +R+++S ++ L+ + R G+A KG Y Y+ K KPDP +
Sbjct: 544 FGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKY 603
Query: 600 IEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 659
IE+ R +S + K +++EK+I+EM FPVVNE+CRV EGI V+A+DLD A ++GM
Sbjct: 604 IEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMG 663
Query: 660 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710
FP YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP FL ER +KG+ L
Sbjct: 664 FPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLL 714
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 813 bits (2101), Expect = 0.0
Identities = 209/715 (29%), Positives = 344/715 (48%), Gaps = 15/715 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
+T+ G+ + VN + L+ + + VK ++++
Sbjct: 3 YEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK 62
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
F G DI F + D L+ + + ED P VAA+ G+ALGGGLE+
Sbjct: 63 DVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMC 122
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
+ R+ A ++GLPE+ LG+ PGFGGT RLPRL+G+ A+E + K +E+ K+
Sbjct: 123 LAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKV 182
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR---SLHRTDKLGSLSEAREVLKLARLQA 234
+DAVVT+++L + + + KL ++ + A
Sbjct: 183 SAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVA 242
Query: 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294
+ PN P + I++ G + EA F +L S L+ +F + K
Sbjct: 243 GQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKK 302
Query: 295 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN 354
V D + V++ AV+G G+MG GIA +++K++N + +G+
Sbjct: 303 KAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL 360
Query: 355 VRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP 414
+ G V +G++T K L ++ L Y +F +VD+V+EAV+E+ +KQ + +E+E
Sbjct: 361 LVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVR 420
Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
ILA+NTSTI ++++ + + +G HFF+P H+MPL+E++R E++S + +
Sbjct: 421 EDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVA 480
Query: 475 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQL 534
K + K P+VV +C GF VNR FPY LVS GVD RID + FG P+GP L
Sbjct: 481 YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL 540
Query: 535 LDLAGYGVAAATSKEFDKAFPDRSFQ--SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 592
+D+ G + FPDR +D L ++ R G+ NGKG Y YE K K
Sbjct: 541 MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQ 600
Query: 593 DPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDD 652
V + E + + VT+++I+ ++ P+ E+ R LE+GIV A++ D
Sbjct: 601 KKLVDSSVLEVLK----PIVYEQRDVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADM 656
Query: 653 ASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
V G+ FP +RGG + + D++G ++++ G + P+ L E A G
Sbjct: 657 GLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAE-LGALYHPTAKLREMAKNG 710
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 800 bits (2069), Expect = 0.0
Identities = 234/715 (32%), Positives = 376/715 (52%), Gaps = 35/715 (4%)
Query: 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
+A+I L NPPVNA++ ++ +++ ++A S VKAIV+ G G F G DI+ F
Sbjct: 29 HSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88
Query: 73 VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
P +++ +V+ I+ +KP++AA++G+ALGGGLELA+GCH RIA K ++G
Sbjct: 89 --------FTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVG 140
Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
LPE+TLG++PG GTQ LPR+VG+ A++++ K ++++E +LG++DAVV + ++
Sbjct: 141 LPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVV-KSDPVEE 199
Query: 193 SRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIE 252
+ +A I + R + SL V A + +K P + + C+ I+
Sbjct: 200 AIKFAQKIIDKPIEPRRI--FNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQ 257
Query: 253 EGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVR 309
+ H G+ +E K+F L ++ L + FFA+++ +K + + V
Sbjct: 258 ASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVS 317
Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
V V+G G MG GIA + I VV E + + L K I + +R +
Sbjct: 318 SVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS 377
Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
A L+ E VD+V+EAV E + LK+K+F+EL C P L TNTS ++++
Sbjct: 378 --AKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD 435
Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489
+ T +IG HFFSPAHVM LLE++ + +S I +M++ K I K+ VVVGNC
Sbjct: 436 DIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC 495
Query: 490 TGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKE 549
GF NR PY L+ G +D + FG +GPF++ DLAG V K
Sbjct: 496 YGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKG 555
Query: 550 FDKAFPD-----------RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSV 596
P S SPL D+L ++GR G+ GKG Y Y+K KPDP +
Sbjct: 556 QGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWL 615
Query: 597 LPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVL 656
+ + R + +I + +++++EI+E L+ ++NE+ R+LEEG+ R +D +
Sbjct: 616 STFLSQYREVHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLH 671
Query: 657 GMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGIP 709
G +P ++GG +F+A +VG V L+K+ + + +PS +L +G P
Sbjct: 672 GYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSP 726
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463 | Back alignment and structure |
|---|
Score = 523 bits (1350), Expect = 0.0
Identities = 143/449 (31%), Positives = 224/449 (49%), Gaps = 24/449 (5%)
Query: 277 DTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVRKVAVIGGGLMGSGIATAHILNNIY 333
++ L + FFA+++ +K + + V V V+G G MG GIA + I
Sbjct: 3 GQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIS 62
Query: 334 VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE 393
VV E + + L K I + +R + A L+ E VD+V+E
Sbjct: 63 VVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS--AKPKLRFSSSTKELSTVDLVVE 120
Query: 394 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM 453
AV E + LK+K+F+EL C P L TNTS ++++ + T +IG HFFSPAHVM
Sbjct: 121 AVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVM 180
Query: 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV 513
LLE++ + +S I +M++ K I K+ VVVGNC GF NR PY L+ G
Sbjct: 181 RLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGS 240
Query: 514 DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-----------RSFQSP 562
+D + FG +GPF++ DLAG V K P S SP
Sbjct: 241 KPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSP 300
Query: 563 LVDLLLKSGRNGKANGKGLYTYEKGSK--PKPDPSVLPIIEECRRLSNIMPGGKPISVTE 620
L D+L ++GR G+ GKG Y Y+K KPDP + + + R + +I + ++++
Sbjct: 301 LGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISK 356
Query: 621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVY 680
+EI+E L+ ++NE+ R+LEEG+ R +D + G +P ++GG +F+A +VG V
Sbjct: 357 EEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVL 416
Query: 681 TSLKKWSQLYGNF--FKPSRFLEERATKG 707
L+K+ + + +PS +L +G
Sbjct: 417 EKLQKYYRQNPDIPQLEPSDYLRRLVAQG 445
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460 | Back alignment and structure |
|---|
Score = 498 bits (1285), Expect = e-171
Identities = 114/443 (25%), Positives = 197/443 (44%), Gaps = 23/443 (5%)
Query: 275 MLDTSRGLVHVFFAQRATSKVPNV-----TDIGLKPRGVRKVAVIGGGLMGSGIATAHIL 329
+ + + + ++ + V VA+IGGG MG +A L
Sbjct: 16 LYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGL 75
Query: 330 NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389
I L N + + ++ + A + +L + LK D+ + + D
Sbjct: 76 AGIETFLVVRNEQRCKQELEVMYAR---EKSFKRLNDKRIEKINANLKITSDFHKLSNCD 132
Query: 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP 449
+++E+VIE + LK+++F+ LE C CI TNTS++DLN + ++G HFF+P
Sbjct: 133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNP 192
Query: 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLL 508
A+V+ L+EI+ TS+Q I + IKK+PV+VGNC F NR Y QS +L+
Sbjct: 193 ANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLM 252
Query: 509 VSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLL 568
G +ID I +FG +GP + D+ G+ V KE +P+ +
Sbjct: 253 YEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKENGLEP------NPIEKEMW 306
Query: 569 KSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMI 627
+ R G+ KG Y Y+ + + + D + II + + +++++ +
Sbjct: 307 RLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQ----NAKSNIQIINDQDVINFM 362
Query: 628 LFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWS 687
L+P VNE R +EEG++ S +D +LG +P + GG + + G + + L WS
Sbjct: 363 LYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWS 422
Query: 688 QLYGN---FFKPSRFLEERATKG 707
L + + G
Sbjct: 423 SLEPKESAYIVADALKTANVSTG 445
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 259 bits (665), Expect = 7e-79
Identities = 104/302 (34%), Positives = 154/302 (50%), Gaps = 4/302 (1%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
V+ VAVIG G MG+GIA + V+L ++++E L + I I A + VTRGKLT +
Sbjct: 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
LK L V D D+VIEA E + +K+ +F++L + CPP +L TNTS+I
Sbjct: 65 TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + + + +R+ G HFF+PA VM L+E+V T+A+V+ L + K PV
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAA 545
+ GF VNR PY A + V ID+A+R G P+GP +L DL G V A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244
Query: 546 TSKEFDKAFP-DRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEEC 603
+ AF +R F S + L+ GR GK +G G+Y + + +
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSP 304
Query: 604 RR 605
+
Sbjct: 305 MK 306
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 6e-24
Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 16/214 (7%)
Query: 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS 436
GV D+ ++ + +EA + K+ + + +L T + + +
Sbjct: 280 LGVYDWRAEREAVVGLEA-VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLA 338
Query: 437 SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR 496
+I ++ I + + K + + + G + R
Sbjct: 339 RPVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWR 392
Query: 497 AFFPYSQSARLLVSLGV-DVFRIDSAIRS-FGLPIGPFQLLDLAGYGVAAATSKEFDKAF 554
A + GV ID+A+R P GP G+ + +
Sbjct: 393 TVAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHY 452
Query: 555 PDRSFQ-SPLV--DLLLKSGRNGKANGKGLYTYE 585
+ ++ L+ LL+SG +G + +
Sbjct: 453 GEERYRPCSLLRQRALLESGY----ESEGHHHHH 482
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 623 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 682
++ + ++NE+ L++G V D+D A LG+++P G + W +G +
Sbjct: 389 LIWRTVAMIINEALDALQKG-VASEQDIDTAMRLGVNYPY---GPLAWGAQLGWQRILRL 444
Query: 683 LKKWSQLYGNF-FKPSRFLEERA 704
L+ YG ++P L +RA
Sbjct: 445 LENLQHHYGEERYRPCSLLRQRA 467
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 1e-75
Identities = 94/292 (32%), Positives = 143/292 (48%), Gaps = 10/292 (3%)
Query: 304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG- 362
K V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF 70
Query: 363 ----KLTQDKANNALKMLKGVLDYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHC 417
K + L + D + D+V+EA++E++ +K ++F L+K H
Sbjct: 71 AENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHT 130
Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477
I A+NTS++ + + T+ QDR G HFF+P VM L+E+++T TS + L+ K
Sbjct: 131 IFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSK 190
Query: 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLL 535
+ K PV + GF VNR PY A L G ID+A++ G P+GPF+LL
Sbjct: 191 ALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL 250
Query: 536 DLAGYGVAAATSKE-FDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYE 585
D G + + Q SP ++ L+ + GK G+G Y Y+
Sbjct: 251 DYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 1e-66
Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 27/309 (8%)
Query: 299 TDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL 358
+D KV VIG GLMG GIA A I + VVL++V+ + L + I +
Sbjct: 3 SDKIHHHHHHMKVFVIGAGLMGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEEL--- 58
Query: 359 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 418
L ++ + KD D+V+EAV E + K ++ E+E+ +
Sbjct: 59 --------------LSKIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAP 102
Query: 419 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478
L +NTS I ++ + E+ S R +G H+ +P HVMPL+EIV + T ++ + + +
Sbjct: 103 LCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRE 162
Query: 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQL 534
+ K VV VNR A ++ GV +D + GL GP
Sbjct: 163 LGKEVVVCKG--QSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGN 220
Query: 535 LDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD 593
LD G VA S K F D F+ + +K G G GKG+Y Y + +
Sbjct: 221 LDYIGLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGPKAYEERV 280
Query: 594 PSVLPIIEE 602
+ ++
Sbjct: 281 ERLKKLLRF 289
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 3e-64
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 8/200 (4%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
VT +D + +I + + VN L + L + + A RD+V A+V+ GN FSGGF
Sbjct: 7 VTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAA-DRDNVGALVIAGNHRVFSGGF 64
Query: 66 DINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
D+ V +G+ D+ + + KP+V A G A+ G L R
Sbjct: 65 DLKVLT----SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHR 120
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
+AA + E+ +G+ + + L + S + L+K+ E G ID +
Sbjct: 121 VAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEI 180
Query: 184 VTSEELLKVSRLWALDIAAR 203
E +L + A + A
Sbjct: 181 SLPEVVLSRAEEAAREFAGL 200
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 3e-64
Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 1/191 (0%)
Query: 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
D +A+ TL + P NA++ ++ + + ++ D+++ +V+ G G FS G DI F
Sbjct: 14 DHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTS 73
Query: 73 VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
V A + + + +E C KP++AA+ G ALGGGLE AM CH R A +LG
Sbjct: 74 VTEAKQATELAQLGQV-TFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLG 132
Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
LPELTLG+IPGF GTQRLPR VG +KA EMML S IT E K GL++ V E L
Sbjct: 133 LPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDD 192
Query: 193 SRLWALDIAAR 203
+ A IA +
Sbjct: 193 TLKVAKQIAGK 203
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 2e-63
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 5/197 (2%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
GVA I L NPPVN + ++ L+ V+ IV + F D+ +
Sbjct: 16 EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIG 75
Query: 71 QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
+K+ +++ V + V LI + + + G A GGG E AA
Sbjct: 76 EKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAA 135
Query: 128 -KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
LG E +G+IPG GGTQ L VG ++A+E++L + +E G I+ + +
Sbjct: 136 ETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA 195
Query: 187 EELLKVSRLWALDIAAR 203
+EL + A +IAA
Sbjct: 196 DELDEYVDRVARNIAAL 212
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 9e-63
Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 4/193 (2%)
Query: 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQ 71
DG+A I L N+ + ++ D+K +++ + + FS G DIN +
Sbjct: 17 DGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLR 76
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
+ E ++ I + +A +EG +GGGLE+A+ C R + +
Sbjct: 77 SA-DPRFKTQFCLFCNE-TLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGK 134
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+GLPE++LGV+ G GGTQRL RL+G S+A++M + ++IT +E ++GL++ V E
Sbjct: 135 IGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETR 194
Query: 191 KVSRLWALDIAAR 203
+ +R +A +A
Sbjct: 195 ERTREYARKLANS 207
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 9e-63
Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 5/196 (2%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
+ V T PP+N + +V L EE + ++ F D+
Sbjct: 15 DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKV 74
Query: 71 QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP- 127
+ A L + + +A + G A G G E + C R A+
Sbjct: 75 PEY-TAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
LG PE+ +G PG G Q L RL+G +A+E +L S ++ + G ++ V
Sbjct: 134 NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDA 193
Query: 188 ELLKVSRLWALDIAAR 203
EL + A ++
Sbjct: 194 ELDEFVAGIAARMSGF 209
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 2e-62
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 2 AAPRVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
+ RV +E GVA++ NPPVN+L++ + L E+ + + ++LT +
Sbjct: 1 GSQRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG 60
Query: 61 -FSGGFDINVFQK---VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
FS G D+ H AG + ++ + +V+A+ G GG +
Sbjct: 61 VFSAGLDLTEMCGRSPAHYAGYWKAVQEL-----WLRLYQSNLVLVSAINGACPAGGCLV 115
Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
A+ C RI A P+ +GL E LG+I F L +G A + L E
Sbjct: 116 ALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEA 175
Query: 175 WKLGLIDAVVTSEELLKVSRLWALDIAAR 203
++G++D VV E++ + A
Sbjct: 176 LQVGIVDQVVPEEQVQSTALSAIAQWMAI 204
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 2e-62
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 2/192 (1%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+ G+A + + PP NA+ + + +E RDD+ A+VL G FS G D+ +
Sbjct: 31 DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELR 90
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+ A + V +E ++ + KP VAAV G ALG GL LA+ R++ +
Sbjct: 91 TL-NAPEADTAARVRLE-AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
G E+ G+IPG GG RL R+VG S+A E++ + +EE LGLID +V +++
Sbjct: 149 GATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYD 208
Query: 192 VSRLWALDIAAR 203
+ WA
Sbjct: 209 SAVAWARRYLEC 220
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 1e-60
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 5/192 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
V I L P NAL ++A LKD + D ++A+V+ G G FS G D++ +
Sbjct: 24 GPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELR 81
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+ A + + V + I+ C+ P++AA++G +GGGLELA H R+A
Sbjct: 82 ER-DATEGLVHSQTWHR-VFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
LPE + G+ G GG+ RLPRL+G+++ +MML + ++ EG G ++ +
Sbjct: 140 ALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYD 199
Query: 192 VSRLWALDIAAR 203
+ +A
Sbjct: 200 KALELGNRVAQN 211
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 4e-60
Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ ++++ V I+L N+L++ ++ L++ + + + ++LTG G
Sbjct: 5 LQLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGE 64
Query: 60 R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
+ F G D+ + V + + ++E +P++AA+ G+ALGGG EL++
Sbjct: 65 KAFCAGADLKERAGM-NEEQVRHAVSMIRT-TMEMVEQLPQPVIAAINGIALGGGTELSL 122
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
C RIAA LGL E TL +IPG GGTQRLPRL+G+ +A E++ + I+++E + G
Sbjct: 123 ACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYG 182
Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
L++ VV L + + A IA+
Sbjct: 183 LVEFVVPVHLLEEKAIEIAEKIASN 207
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 1e-59
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 19/205 (9%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
V+ + +DGVA +TL N VNA++ ++ ++A D +++TG G SGG+
Sbjct: 8 VSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQA--EKDRAIVIVTGQPGILSGGY 64
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMG 119
D+ V + ++ LV + PI+ A G A+ G L +
Sbjct: 65 DLKVMTS---------SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLS 115
Query: 120 CHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
RI +GL E+ +G+ G + + S ++ ++ E G
Sbjct: 116 ADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAG 175
Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
+D VV+ EEL + A +
Sbjct: 176 FLDKVVSVEELQGAALAVAAQLKKI 200
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 3e-59
Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 4/195 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DG+A + L P NA++ + + D E +VLTG G ++ G D+ +
Sbjct: 17 DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72 KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ AG L + E + KP +A V G GGG + C I A +
Sbjct: 77 REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
GL E+ G+ PG ++ + VG +++ ++ K+ ++ ++GL++ V +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVSRLWALDIAAR 203
L +V+ A ++ +
Sbjct: 197 LREVTIELARNLLEK 211
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 4e-59
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
V II L P V NAL+ +VA + E + V+ IVLTG G F+ G DI
Sbjct: 12 EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEM 71
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
K D + ++ + + K P++AAV GLALGGG ELA+ C +A+ +
Sbjct: 72 AKD----DPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAE 127
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
G PE+ LGV+PG GGTQRL +L+G +A+E + ++++E +LG+++ VV+ E L+
Sbjct: 128 FGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLM 187
Query: 191 KVSRLWALDIAAR 203
+ + A +A +
Sbjct: 188 EETMRLAGRLAEQ 200
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 5e-59
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 8/192 (4%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+GV IT+ + N + IV GL+ F K ++LTG G FS G
Sbjct: 11 NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLI 70
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+ +V V + LI DC+ PI+AA++G + GGGL L + + + ++
Sbjct: 71 R-------KTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVY 123
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
+ G P + L +G A EM+ ++ +E + G+ VV+ +++L
Sbjct: 124 ATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLN 183
Query: 192 VSRLWALDIAAR 203
++ IA
Sbjct: 184 YAQQLGQKIAKS 195
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 5e-59
Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 5/204 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ GV +I L P NAL + A + D + + ++ AIV+TG+
Sbjct: 6 TTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER 65
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G DI + + ++ + + +KPIVAAV G ALGGG ELAM
Sbjct: 66 AFAAGADIAEMVTL----TPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAML 121
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C IAA + G PE+TLG++PG GGTQRL R VG +KA+++ L +S+T+EE ++GL
Sbjct: 122 CDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGL 181
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ +V + +LL + A IA
Sbjct: 182 VSRIVPAADLLDEALAVAQRIARM 205
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 6e-59
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M + +E + V IITL P NAL ++ + E D+ AI++TG+
Sbjct: 22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK 80
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G DI + + + + P +AAV G ALGGG ELAM
Sbjct: 81 AFAAGADIKEMADL----TFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMM 136
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C IAA + G PE+ LGV+PG GG+QRL R +G +KA++++L +++ + E + GL
Sbjct: 137 CDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGL 196
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ VV +++LL +R A I+
Sbjct: 197 VSRVVPADDLLTEARATATTISQM 220
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 7e-59
Identities = 49/198 (24%), Positives = 93/198 (46%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
+ E G GV + L +P +N++ + L D + DV+ +++ G G FS G
Sbjct: 15 LRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGG 74
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
+ + G + + +V + + KP+V+A+ G A+G GL +A+ +A
Sbjct: 75 SFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVA 134
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
+ ++ LGV G P LVG++KA +L ++++ EE ++GL+ V
Sbjct: 135 SATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVD 194
Query: 186 SEELLKVSRLWALDIAAR 203
+E+L + A ++A
Sbjct: 195 DDEVLPTATRLAENLAQG 212
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 8e-59
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 3/203 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ + + V +I L P NA ++ L E + D++A VL G G
Sbjct: 6 SDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP 64
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G D+ G SL P+ + KP++ AV G L G+ELA+
Sbjct: 65 LFTAGLDLASVAA-EIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALA 123
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
IA E+ G+ P G T R PR G A+ ML + + + E ++G+
Sbjct: 124 ADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGI 183
Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
+ +V E + + A IA
Sbjct: 184 VQEIVPVGEHVDTAIAIAQTIAR 206
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 1e-58
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+P + ++ D V +TL P NAL+ + + +A + DDV +++TG
Sbjct: 6 ADSPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP 64
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F G D+ + + D KP++ A+ G A+ GGLELA+
Sbjct: 65 VFCAGLDLKELG-----------DTTELPDISPKWPDMTKPVIGAINGAAVTGGLELALY 113
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C IA+ + +G++P +G + RLP+ VG+ A M L +++++ + GL
Sbjct: 114 CDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGL 173
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ VV ++LL +R A I
Sbjct: 174 VTEVVAHDDLLTAARRVAASIVGN 197
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 2e-58
Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 2/200 (1%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
+ E DG+A IT+ P V NA V + +A D++ I+LTG G + F
Sbjct: 29 IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
G D V G D S + ++V I C KP+VA V G ++GGG L M C
Sbjct: 89 GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
IAA G +G G G + R+VG KA E+ L + +++ +GL++ V
Sbjct: 149 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 208
Query: 184 VTSEELLKVSRLWALDIAAR 203
V +L K + W ++
Sbjct: 209 VPLADLEKETVRWCREMLQN 228
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 2e-58
Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 3/203 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
AA + +E + V I+T+ P NAL+ +V+ ++E D ++A +LTG G
Sbjct: 6 SAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGS 64
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
+ G D++ V G + ++ + L KP++AAV G LGGG E+
Sbjct: 65 AYCVGGDLSDGWMV-RDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQ 123
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
R++ GLPE+ G++PG G RL R + +KA+EM+L + +T+ E + GL
Sbjct: 124 TDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGL 183
Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
+ VV + L +R A I
Sbjct: 184 VGHVVPAGTALDKARSLADRIVR 206
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 4e-58
Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 4/193 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
D V +ITL +P N + + +KD A + D V+A+V+ G R FS G D N
Sbjct: 8 DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEV 67
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+++ + D+ D ++ + + + KP +AAV+G A+G G + A+ R+ A
Sbjct: 68 KQLSRSEDIEEWIDRVID-LYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTAN 126
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+PEL G+ G L G S E++ +S+ + L++ VV S LL
Sbjct: 127 FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALL 185
Query: 191 KVSRLWALDIAAR 203
+ A +A+
Sbjct: 186 DAAITQAHVMASY 198
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 196 bits (502), Expect = 5e-58
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 8/206 (3%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M+ V + + VA+I NAL+ + L + +R +++ I+L G
Sbjct: 1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58
Query: 60 R--FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
FS G DI+ G L D + + +I+ KPI++ VEG GG E+
Sbjct: 59 SKVFSAGHDIHELP---SGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMI 115
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
M IAA + + + LGV G L R G E++ + IT++ +
Sbjct: 116 MSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAV 175
Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
G+++ VV EEL + A I+ +
Sbjct: 176 GILNHVVEVEELEDFTLQMAHHISEK 201
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 7e-58
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 2/204 (0%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
P + GV IT NA+ + GL + + + + V+A++L G GG
Sbjct: 7 ARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG 65
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
FS G + +++ + + L +V + +P+VAAVE +A+G GL LA+
Sbjct: 66 VFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALA 125
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
+ T+L L LGV G P LVG++KA +LL++ +T EE +LGL
Sbjct: 126 ADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGL 185
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ V E++ + + A +A
Sbjct: 186 VALAVEDEKVYEKALEVAERLAQG 209
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 7e-58
Identities = 73/193 (37%), Positives = 93/193 (48%), Gaps = 5/193 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
N V +I L P NAL ++ L E V AIVLTG F+ G DI
Sbjct: 14 NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
Q + I KKP++AAV G ALGGG ELAM C A K Q
Sbjct: 74 QNR----TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
G PE+ LG IPG GGTQRL R VG S A+EM+L I++++ + GL+ + E L+
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLV 189
Query: 191 KVSRLWALDIAAR 203
+ + A IA
Sbjct: 190 EEAIQCAEKIANN 202
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 9e-58
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 6/208 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG- 58
M+ V E+ + ITL P N L + L + + + +I+L
Sbjct: 1 MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHR 59
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
FS G + + +V L V I K VA + G A GGG +
Sbjct: 60 AYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNM 119
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
+ C RIA + + +G+ P G + LPR++G + + ++L K TSEE +
Sbjct: 120 MLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALR 179
Query: 177 LGLIDAVV-TSEELLKVSRLWALDIAAR 203
LGLI + +EL + + + ++
Sbjct: 180 LGLIQEICENKQELQERVKNYLKAVSEG 207
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 1e-57
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 4/204 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
P + + GV + + P NAL + + +EA DV+ +VL G
Sbjct: 2 SLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEH 60
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G D+ F + V +++ KP++ AV+G+A+G G+ + +
Sbjct: 61 DFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQ 120
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
A +P ++LG+ P G +Q L + G KA E++ +K +E + GL
Sbjct: 121 ADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGL 180
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
++ +V E+ ++ A + A
Sbjct: 181 VNEIV--EDAYATAQATAQHLTAL 202
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 1e-57
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 5/195 (2%)
Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
DG I L N+L ++ ++ A + DD K ++L+ G F G D F
Sbjct: 13 DGFTHILLSTKSSENNSLNPEVMREVQSALSTA-AADDSKLVLLSAVGSVFCCGLDFIYF 71
Query: 71 QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ ++ + VN KKPI+ AV G A+G G + C A K
Sbjct: 72 IRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK 131
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
P T G P T P+++G + A EM+L + +T++E GL+ V
Sbjct: 132 AWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGT 191
Query: 189 LLKVSRLWALDIAAR 203
+ + ++A+
Sbjct: 192 FTQEVMVRIKELASC 206
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 2e-57
Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 4/194 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
N G+ ++ + N+L+ ++ L + S V+ I++ F G D+
Sbjct: 19 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE 78
Query: 70 FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
K+ + +V V+N I + P +AA++GLALGGGLELA+ C R+AA
Sbjct: 79 RAKM-SSSEVGPFVSKIRA-VINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSA 136
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
++GL E L +IPG GGTQRLPR +G+S A E++ ++ + +E +GLI V+ +
Sbjct: 137 KMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQE 196
Query: 190 LKVSRLWALDIAAR 203
+ ALD+A
Sbjct: 197 GDAAYRKALDLARE 210
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 3e-57
Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 3/193 (1%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
+G+A +T+ P V NA VA + D F A +V IVLTG G F G D
Sbjct: 21 EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKR 80
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
G +P ++V + LI KP++A V+G A+GGG L + C IAA
Sbjct: 81 GH-GGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAI 139
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
G +G G+ L R+VG KA E+ L + ++E +GL++ VV E++
Sbjct: 140 FGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVE 199
Query: 191 KVSRLWALDIAAR 203
+ W +I
Sbjct: 200 DETVQWCKEIMKH 212
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 5e-57
Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 13/192 (6%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+ V I L P NAL +V L +A +AIVLTG G F G D++
Sbjct: 29 EAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGTAFCAGADLSGDA 87
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
D + + ++ P+V A+ G A+G GL+LAM C R+ AP
Sbjct: 88 FAADYPD-------RLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
P G+ +RL LVG +A M+L ++ +T+E G+ + + T +
Sbjct: 141 QFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQA 200
Query: 192 VSRLWALDIAAR 203
WA +IA
Sbjct: 201 ----WAAEIARL 208
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 7e-57
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 8/227 (3%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DGVA++TL P N+ + + L ++ V+ IVLTG F G I+
Sbjct: 15 DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAA 74
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
PD S V + + P++AAV G A+G G+ LA+ RI A + +
Sbjct: 75 ---ETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRY 131
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
+P++ GV P LPRLVG + A E++L S +++ + GL + + + ++L
Sbjct: 132 AIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLG 191
Query: 192 VSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQA 234
+ A DIA P + L ++ +S A +
Sbjct: 192 AALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHL 238
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 2e-56
Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 3/203 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
RVT E + +I L NA ++A L E ++ + VL +G
Sbjct: 9 SGPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGE 67
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G D+ A PD V+ + KP+V AV+G G+EL +
Sbjct: 68 HFTAGLDLMELAP-KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLN 126
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
+AA T+ E+ G+ P G T R PR G + A+ +L ++E ++ L
Sbjct: 127 ADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRL 186
Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
+ VV E L + +A IA
Sbjct: 187 LTEVVEPGEELARALEYAERIAR 209
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 2e-56
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
+ P +E I+T+ P NAL+ ++ + + ++ + D++ +LTG GG
Sbjct: 18 SGPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY 76
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAM 118
F G D+ K GD + L KKP++AAVEG A+ GG E+
Sbjct: 77 FCAGMDLKAATK-KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQ 135
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
G R+AA + G+ E + P G RL R + + A +++L + IT+ E ++G
Sbjct: 136 GTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMG 195
Query: 179 LIDAVVTSEELLKVSRLWALDIAA 202
L+ VV + L + A IAA
Sbjct: 196 LVGHVVPDGQALTKALEIAEIIAA 219
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 1e-55
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 3/204 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ + ++ ++ V +TL P NA + +A V ++LTG+G
Sbjct: 3 GSMVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGR 61
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
FS G D+ Q ++ + KP++ AV GL +G G +
Sbjct: 62 GFSAGTDLAEMQA-RITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGY 120
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
+ +L P +LGV P + LP+LVG A +++ S+ I +EE ++GL
Sbjct: 121 ADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGL 180
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ + + EELL +R A +AA+
Sbjct: 181 VWRICSPEELLPEARRHAEILAAK 204
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 1e-55
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 6/202 (2%)
Query: 3 APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR- 60
AP E V +IT+ P NA+ + G+ D EEA +V+A+VLTG G +
Sbjct: 8 APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKS 66
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
F G D+ + P+ V KP +AAV G ALGGG ELA+
Sbjct: 67 FCAGADLKAIAR-RENLYHPDHPEWGFAGYV--RHFIDKPTIAAVNGTALGGGTELALAS 123
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
+A + Q GLPE+ G+I GG R+ + A+ ++L + +++ GLI
Sbjct: 124 DLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLI 183
Query: 181 DAVVTSEELLKVSRLWALDIAA 202
+ VV + +L + A I
Sbjct: 184 NEVVEAGSVLDAALALASAITV 205
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 2e-55
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 5/195 (2%)
Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
DG I L NAL ++ + + A + DD K ++ + G F G D F
Sbjct: 31 DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 89
Query: 71 QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
K + ++ + VN KKPIV +V G A+G G + C A K
Sbjct: 90 VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
P T G P + P+++G + A EM++ + +T+ E GL+ V +
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209
Query: 189 LLKVSRLWALDIAAR 203
+ + ++A+
Sbjct: 210 FTQEVMIQIKELASY 224
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 191 bits (486), Expect = 2e-55
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 17/219 (7%)
Query: 1 MAAPRVTMEVGNDGVAIITL-----INPPVNALAIPIVAGLKDKFEEA-----TSRDDVK 50
+ R+ E V I + INP + +V + T+
Sbjct: 29 GSTLRIIEEP-QRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAP 87
Query: 51 AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----IEDCKKPIVAAV 105
+VL + F+ G D+ +F ++ GD + + D + V + + +A V
Sbjct: 88 HVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALV 147
Query: 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165
+G ALGGG E A+ CH IA +GLPE+ + PG G + + + A ++ML
Sbjct: 148 QGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLE 207
Query: 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204
++E+ +GL+D VV + + + R
Sbjct: 208 GNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI-RESKRT 245
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 2e-55
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 7/193 (3%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
TL P NAL+ +V L D + A R+ V +V G G FS GFD +
Sbjct: 14 RPAAWTFTLSRPEKRNALSAELVEALIDGVDAA-HREQVPLLVFAGAGRNFSAGFDFTDY 72
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+ + M + E+++ + +A G G G++L C R P+
Sbjct: 73 ETQSEGDLLLRMVRI--EMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAG 130
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+P L G++ GT+R +VG +A+ ++ +++ ++E ++G + +
Sbjct: 131 FRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWP 187
Query: 191 KVSRLWALDIAAR 203
+ A A
Sbjct: 188 ALIDAAAEAATAL 200
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 3e-55
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 3/192 (1%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+ + IITL P N++ + GL ++ T +A V+TG G FS G D
Sbjct: 35 DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYL 94
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+++ D+ +V + C+ P+VAAV G A+G G L A
Sbjct: 95 KELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAY 154
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
L P + +G++ GG P + L A E L I+++ +LGL + V ++ +
Sbjct: 155 LADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPV 212
Query: 191 KVSRLWALDIAA 202
+ A I
Sbjct: 213 AEAIACAKKILE 224
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 4e-55
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 9/206 (4%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
V ++ +A++TL P NA+A ++ K + + +DV+A+V+TG G F G
Sbjct: 25 VLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSG 84
Query: 65 FDINVFQKVHGAGDVSLMPDVSVEL------VVNLIEDCKKPIVAAVEGLALGGGLELAM 118
D + P +++ V+ + +P++AA+ G A+GGGL LA+
Sbjct: 85 ADQKSAGPI-PHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLAL 143
Query: 119 GCHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
C R+A+ + G+ G + LPR +G S+A ++ML + + ++E ++
Sbjct: 144 ACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERI 203
Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
GL+ V SE LL+ IA
Sbjct: 204 GLVSRKVASESLLEECYAIGERIAGF 229
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 188 bits (481), Expect = 5e-55
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 9/202 (4%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
P V +E D + IIT+ P N++ + L D + + + +LTG GG
Sbjct: 13 TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGS 71
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
F G D+ F G+ V + KP++AAVEG AL GG ELA+
Sbjct: 72 FCAGMDLKAFA----RGE---NVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALAT 124
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
+AA + G+PE+ G++ G GG RLP + + A+E+ L ++++E LG++
Sbjct: 125 DLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMV 184
Query: 181 DAVVTSEELLKVSRLWALDIAA 202
+ + L + A I A
Sbjct: 185 NVLAEPGAALDAAIALAEKITA 206
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 5e-55
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 3/193 (1%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
VA++ L +P N L+ + L ++ + V+A+VLTG G FS G D+ +
Sbjct: 7 GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLE 66
Query: 72 KVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+V G + + + + KP VAAV G A+ GG LA+ C + + +
Sbjct: 67 RVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEAR 126
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
LG E+ +G + + L R VG A +++L + + + E LGL++ + + L
Sbjct: 127 LGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKAL 185
Query: 191 KVSRLWALDIAAR 203
+ ++ A ++A
Sbjct: 186 EEAKALAEEVAKN 198
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 2e-54
Identities = 36/200 (18%), Positives = 82/200 (41%), Gaps = 4/200 (2%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
+ +G+ + + D F + + D + ++LTG+G +
Sbjct: 25 LHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAE 84
Query: 65 FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
D V + +++ N + D + P+++AV G AL E + +
Sbjct: 85 IDFPSLGDVTNPREWDKTYWEGKKVLQN-LLDIEVPVISAVNGAALLHS-EYILTTDIIL 142
Query: 125 AAPKTQL-GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
A+ T +P L G++PG G P +GL + + + +T+++ ++L ++ V
Sbjct: 143 ASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEV 202
Query: 184 VTSEELLKVSRLWALDIAAR 203
+ +L++ + A +A +
Sbjct: 203 LPQSKLMERAWEIARTLAKQ 222
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 3e-54
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 4/195 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
DGVA IT+ P NAL++ + + D A D V A+++TG F GF +
Sbjct: 10 EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 71 QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
G V ++ +++ I K+P++AA+ G+A GGGL +++ I A
Sbjct: 70 PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
+ T+G+ + L R+VG+ +A+E+ML ++++ EE GL+ V +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
E +V+ A ++AA
Sbjct: 190 EFREVAWKVARELAA 204
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 3e-54
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 8/198 (4%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR------FSGGF 65
G+A I + P NA V L D F A + + ++LTG G F G
Sbjct: 18 GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGG 77
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
D +V + G D P ++V + LI K ++A V G A+GGG L + C IA
Sbjct: 78 DQSVRGE-GGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIA 136
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
A G +G G G+ L R+VG KA E+ L + +++E ++G+++ VV
Sbjct: 137 ADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVP 196
Query: 186 SEELLKVSRLWALDIAAR 203
+ L + WA +I ++
Sbjct: 197 VDRLEEEGIQWAKEILSK 214
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 5e-54
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ + EV + A ITL P NAL+ ++ L+ + EA + D V +V+TG G
Sbjct: 8 DSFDTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGR 66
Query: 60 RFSGGFDINVFQK-----VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
F G D+ + + + + KP++ AV G+ G G+
Sbjct: 67 AFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGM 126
Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML--LSKSITSE 172
+ IA+ + P +++G++ G R+ R++ S A+ M L + ++++
Sbjct: 127 DWVTTTDIVIASEQATFFDPHVSIGLVAG-RELVRVSRVLPRSIALRMALMGKHERMSAQ 185
Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
++LGLI +V + LL+ + A + +
Sbjct: 186 RAYELGLISEIVEHDRLLERAHEIADIVNS 215
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 3e-53
Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 4/193 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
VA +TL P NA + A + ++A + +V+ +V+TG G F G D++
Sbjct: 10 KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGV 69
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
D + ++ + +KP+VAAV G A G G+ LA+ C R+ + K
Sbjct: 70 T---EEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKAS 126
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+ +G++P G LPRLVG +KA+E+ +L + +T+EE LGL V+ +
Sbjct: 127 FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWE 186
Query: 191 KVSRLWALDIAAR 203
+ + +A ++A
Sbjct: 187 EEVKQFAERLSAM 199
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 3e-53
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 6/201 (2%)
Query: 3 APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
P V +E V + L P NA+ P A L F E + + VL G+ G F
Sbjct: 10 QPAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTF 68
Query: 62 SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
G D+ G ++ + KP++AA+ G A+ GG+ELA+ C
Sbjct: 69 CAGADLKAMGTDRGN-ELHPHGPGPMGPS---RLRLSKPVIAAISGHAVAGGIELALWCD 124
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
R+ LG+ GV GGT RLPRL+G S+A++++L + + + E +GL++
Sbjct: 125 LRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVN 184
Query: 182 AVVTSEELLKVSRLWALDIAA 202
VV + + + A +IAA
Sbjct: 185 RVVARGQAREAAETLAAEIAA 205
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 3e-53
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 5/207 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
++ + EV ++GV +TL P + L+ ++A L D A D V +V+ G G
Sbjct: 3 LSQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRI 62
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSV----ELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
F G D+ + D + ++ + C KP +A VEG+A GL+L
Sbjct: 63 FCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQL 122
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
C A+P + LP + G + R++G EM L + ++
Sbjct: 123 MAACDLAYASPAARFCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALTGATYDADWALA 181
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAAR 203
GLI+ ++ L A +AAR
Sbjct: 182 AGLINRILPEAALATHVADLAGALAAR 208
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 4e-53
Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 9/196 (4%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+ GV ++T+ L F + + K ++LTG G F D F
Sbjct: 23 DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSF 82
Query: 71 QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
G ++ E ++N + + P++AAV G + E+ + +AA
Sbjct: 83 N----LGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAES 137
Query: 129 TQLG-LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
P G++PG G P ++G ++ +L + + + G ++ V++ +
Sbjct: 138 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQ 197
Query: 188 ELLKVSRLWALDIAAR 203
ELL + A IA +
Sbjct: 198 ELLPRAWELARGIAEK 213
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 4e-53
Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DGVA +TL P NAL A L+D E + R V+A+VL G G F G D++
Sbjct: 25 DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEII 84
Query: 72 KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
+ D + + D + VV + +C P++AA+ G+A G G LA+ R+A P T
Sbjct: 85 GATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPST 144
Query: 130 QLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
+ +G+ G G LPR+VGL A +++L ++ + E ++GLI +
Sbjct: 145 RFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGR 204
Query: 189 LLKVSRLWALDIAA 202
+ +R A +A
Sbjct: 205 ADEAARTLARRLAD 218
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 5e-53
Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 10/201 (4%)
Query: 3 APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
A V +E D V +IT+ P NA+ + GL ++ S D+ ++TG GG F
Sbjct: 6 ADEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNF 64
Query: 62 SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
G D+ F G +S + +KPI+AAVEG AL GG EL + C
Sbjct: 65 CAGMDLKAFVS--GEAVLSERGLGFTNV------PPRKPIIAAVEGFALAGGTELVLSCD 116
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
+A + G+PE+ G++ G GG RLP + A+E+ L +S T+E+ K G I+
Sbjct: 117 LVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFIN 176
Query: 182 AVVTSEELLKVSRLWALDIAA 202
+V + L + A I A
Sbjct: 177 RLVDDGQALDTALELAAKITA 197
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 6e-53
Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 11/234 (4%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
A V E GVAIIT NA + AG + A + ++ IVLTG G
Sbjct: 26 DAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGR 85
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVS------VELVVNLIEDCKKPIVAAVEGLALGGG 113
F G + G + E + + +KP++AA+ G +G G
Sbjct: 86 GFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIG 145
Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
L A+ C R AA + G+I FG + LPRL + A++++L ++ +EE
Sbjct: 146 LTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEE 205
Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP----WIRSLHRTDKLGSLSEA 223
+LGL+ VVT E+L+ + +A DIA P I+ D + EA
Sbjct: 206 AAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEA 259
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 1e-51
Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 10/204 (4%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ +++E + V I L P NA+ P++ L +A + + V+A++LTG G
Sbjct: 3 GSMNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGR 61
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F G D+ A + VV I KP++A V G A+G G LA+
Sbjct: 62 AFCSGGDLTGGDTAGAAD--------AANRVVRAITSLPKPVIAGVHGAAVGFGCSLALA 113
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C +AAP + L +G++P G + LP L+G ++ M + ++ I++ ++ G+
Sbjct: 114 CDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGM 173
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
I + +++E V ++
Sbjct: 174 ISHITSADEYESVLTDVLRSVSGG 197
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 1e-50
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 4/194 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DG+ I P NA+ + + + A S+DD VLTGNG +S G D+ F
Sbjct: 34 DGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNFT 92
Query: 72 KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
+ G + +V L V D KP++A V G A+G + L A A+ +
Sbjct: 93 DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
P LG P + P+++ +KA EM++ K +T+ E GL+ V
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF 212
Query: 190 LKVSRLWALDIAAR 203
K A
Sbjct: 213 QKEVWTRLKAFAKL 226
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 1e-50
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 7/207 (3%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ +V +D +A ITL P NA ++ L + A +DV IVL NG
Sbjct: 17 RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGK 75
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
FS G D+ V + + + + KP +AAV+G + GGL L
Sbjct: 76 HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLL 135
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
C IAA P + + + G +G KA E++ +++T+EE +
Sbjct: 136 CWPCDLIIAAEDALFSDPVVLMDI--GGVEYHGHTWELGPRKAKEILFTGRAMTAEEVAQ 193
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAAR 203
G+++ VV + L +R A +IA
Sbjct: 194 TGMVNRVVPRDRLDAETRALAGEIAKM 220
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 3e-50
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 6/205 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M+ + E+ D V ++T+ NA ++ ++ + + A + +V+ IVL NG
Sbjct: 1 MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGK 59
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELA 117
FS G D+ Q + + + D S+ L ++ I KP +A V+G A GGG LA
Sbjct: 60 HFSAGADLTWMQSMANFTEEENLED-SLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLA 118
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
C IA+ + E+ LG+IP + + R +G A + + ++ + + L
Sbjct: 119 AACDIAIASTSARFCFSEVKLGLIPA-VISPYVVRAIGERAAKMLFMSAEVFDATRAYSL 177
Query: 178 GLIDAVVTSEELLKVSRLWALDIAA 202
L+ V + LL+ + +A I+
Sbjct: 178 NLVQHCVPDDTLLEFTLKYASQISN 202
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 180 bits (457), Expect = 7e-50
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 26/226 (11%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-- 57
+ V +E DGVA +T+ NA V ++ + A V+ +L G
Sbjct: 164 VEMEAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVM 222
Query: 58 ------GGR-FSGGFDINVFQK--------------VHGAGDVSLMPDVSVELVVNLIED 96
G R FS G ++ + + V +
Sbjct: 223 SHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPR 282
Query: 97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156
+KP VAAV+G A+GGG +L + +A+ LP G+IPG RL R G
Sbjct: 283 IEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG-AANLRLGRFAGP 341
Query: 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
+ +++L + I ++E L+D VV +EL +
Sbjct: 342 RVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG 387
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 4e-49
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 18/210 (8%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-------FSG 63
+D + P V NA V L + A DV ++LTGNG F
Sbjct: 64 DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 123
Query: 64 GFDINVFQK---------VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
G D + + DV+ + + V LI K ++ V G A GGG
Sbjct: 124 GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 183
Query: 115 ELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
L + C +A+ + + + +G G G+ L R VG A E+ L ++ T+E+
Sbjct: 184 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 243
Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
++G ++AV EL V WA +I A+
Sbjct: 244 MHQMGAVNAVAEHAELETVGLQWAAEINAK 273
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 9e-49
Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 12/203 (5%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
V + L P NA+ L + F++ + D +A+V++G G F+ G D+
Sbjct: 12 KHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMA 71
Query: 72 KVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
+ ++ L +IE C KP++AA+ G +GGG++L C
Sbjct: 72 SDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDI 131
Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLID 181
R + E+ +G+ G QRLP+++G S E+ ++ + ++E GL+
Sbjct: 132 RYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVS 191
Query: 182 AVV-TSEELLKVSRLWALDIAAR 203
V + +L + A DI+++
Sbjct: 192 RVFPDKDVMLNAAFALAADISSK 214
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 5e-48
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 3/204 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M+ P + + GV +TL P NAL+ ++A L + F + V+A+VL +G
Sbjct: 22 MSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK 81
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F G D+ + + +++ I+ P++A V G+A G +L
Sbjct: 82 AFCAGHDLKEMRAEPSREYYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAM 140
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C +A + + + +G+ G L R VG A EM++ + +++++ LGL
Sbjct: 141 CDLAVATRDARFAVSGINVGLFCSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGL 199
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
++ VV + L I A+
Sbjct: 200 VNRVVAPKALDDEIEAMVSKIVAK 223
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 5e-48
Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 18/220 (8%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+++ + II LINP NAL L + E A DV ++ +G
Sbjct: 6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 64
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLAL 110
FS G D K G + S + V + K ++ + G A+
Sbjct: 65 FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAI 124
Query: 111 GGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
G L C + K L P LG+I G T LP G + E ++ +K
Sbjct: 125 GLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPF 184
Query: 170 TSEEGWKLGLIDAVVTSEELL------KVSRLWALDIAAR 203
+ + G I KV +
Sbjct: 185 KYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGL 224
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 6e-46
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 3/204 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ PR T DG+ I L NP N L++ ++ L+ +D+K I+++ G
Sbjct: 29 ESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP 88
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
FS G D+ + G D + V+ I + P++A V GLA G +L
Sbjct: 89 VFSSGHDLKELTEEQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVAS 147
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C +A+ K+ P + +G+ G L R V A+EM+ + I+++E GL
Sbjct: 148 CDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGL 206
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ VV EL + + A IA+
Sbjct: 207 LSKVVPEAELQEETMRIARKIASL 230
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 8e-46
Identities = 59/320 (18%), Positives = 110/320 (34%), Gaps = 30/320 (9%)
Query: 12 NDGVAIITL-----------INPPVNALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG 59
N VA + + +N+ + + L D + +V+ +VLT
Sbjct: 28 NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD 87
Query: 60 R-FSGGFDINVFQK--VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
R F G +I + + + + + + +AAV G GGG EL
Sbjct: 88 RVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYEL 147
Query: 117 AMGCHARIAA--PKTQLGLPELT-LGVIPGFGGTQRL--PRLVGLSKAIEMMLLSKSITS 171
A+ C + + LPE+ LGV+PG GG R+ R V +A + + +
Sbjct: 148 ALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRG 207
Query: 172 EEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-------RKPWIRSLHRTDKLGSLSEAR 224
E L+D VV + + + AL++AA+ + + + RTD+ L+
Sbjct: 208 ERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKT 267
Query: 225 ---EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG 281
+ + R+ + A +D I + +E + +
Sbjct: 268 LDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAV 327
Query: 282 LVHVFFAQRATSKVPNVTDI 301
VF + +
Sbjct: 328 GTWVFRTEGDARHLLAADAS 347
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 90 VVNLIEDCKKPIVAAVE-GLALGGGL-ELAMGCHARI-------AAPKTQLGLPELTLGV 140
+ I+ + + A +E G G ELA + + L E+ G+
Sbjct: 367 TLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGL 426
Query: 141 IPGFGGTQRLP-RLVGLSKAIEMML--LSKSITSEEGWKLGLIDAV 183
P RL R ++ ++ + + ++I E +LGL+ A
Sbjct: 427 YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTAS 472
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 2e-44
Identities = 43/203 (21%), Positives = 68/203 (33%), Gaps = 6/203 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ + + V IT P N + ++ + V +VL G
Sbjct: 4 VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQC-ETSTVTVVVLEGLPE 61
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F G D + G + + ++ ++ V G GGL
Sbjct: 62 VFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSA 121
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
IA L EL G+ P L R +G KA M L++K I+ +E + GL
Sbjct: 122 TDIAIADQTASFSLSELLFGLYPA-CVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGL 180
Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
IDA ++L R L +
Sbjct: 181 IDAFDAESDVL--LRKHLLRLRR 201
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 1e-43
Identities = 46/219 (21%), Positives = 76/219 (34%), Gaps = 32/219 (14%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
D VA IT P NA+ L E A DV I+++G G F GFD++ +
Sbjct: 43 DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYA 102
Query: 72 KVHGAGDVSLMPDVSVEL----------------------------VVNLIEDCKKPIVA 103
+ + + +V + C KP V
Sbjct: 103 EGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVV 162
Query: 104 AVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163
+ G + GG ++A+ IAA ++G P + + +P G +G +A ++
Sbjct: 163 KIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLL 219
Query: 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
IT + + GL +L + IAA
Sbjct: 220 FTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAA 258
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 1e-42
Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 8/206 (3%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ G VA +TL +P NAL+ +V+ L +A+S V+ +VL GG
Sbjct: 8 LVDYAGPAATG-GPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG 66
Query: 60 RFSGGFDINVFQKVHGAGD-VSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
F G D++ + + + E+ ++ I + + P++AA++G GG L
Sbjct: 67 TFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGL 126
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
C +A P++ L E +GV P LP+L A L + + +
Sbjct: 127 VGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEE 185
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAA 202
+GLI E+L D+
Sbjct: 186 IGLITMAA--EDLDAAIDQLVTDVGR 209
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 7e-22
Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 12/200 (6%)
Query: 1 MAAPRVTMEV----GNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLT 55
A V + V ++TL NAL + +V + + + +VL
Sbjct: 34 FATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLD 93
Query: 56 GNGGR-FSGGFDINVFQKVHGAGDVSLMPDV----SVELVVN-LIEDCKKPIVAAVEGLA 109
G+G + F G D+ A + E ++ L+ KP++ +G+
Sbjct: 94 GSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIV 153
Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
+GGGL L G ++ +++ +PE+T+G+ P GG+ L R+ G + + L + +
Sbjct: 154 MGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHM 212
Query: 170 TSEEGWKLGLIDAVVTSEEL 189
+ + +GL D + ++
Sbjct: 213 NAADACYVGLADHYLNRDDK 232
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 5/191 (2%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
AA V + +ITL P NAL + ++ + + ++ + I++ G GG+
Sbjct: 4 AAEEVLLGKKG-CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62
Query: 61 -FSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVAAVEGLALGGGLELAM 118
F G DI V + A E ++N + C+KP VA + G+ +GGG+ L++
Sbjct: 63 AFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 122
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
R+A K +PE +G+ P GG LPRL G + L + + ++ G
Sbjct: 123 HGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAG 181
Query: 179 LIDAVVTSEEL 189
+ V SE+L
Sbjct: 182 IATHFVDSEKL 192
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 9e-09
Identities = 88/603 (14%), Positives = 189/603 (31%), Gaps = 147/603 (24%)
Query: 36 LKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDI------NVFQKVHGAGDVSLMPDVS 86
++D + S++++ I+++ + G F + QK +V L +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKF--VEEV-LRINYK 92
Query: 87 VELVVNLIEDCKKPIVAAVEGLA----LGGGLELAMGCHARIAAPKTQL--GLPELTLG- 139
L+ + + ++P + + L ++ + P +L L EL
Sbjct: 93 F-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 140 --VIPGFGGTQRLPRLVGLSK---AIEMMLLSKSITSEEG----W-KLGLIDAVVTSEEL 189
+I G G+ G K A+++ LS + + W L + + E +
Sbjct: 152 NVLIDGVLGS-------G--KTWVALDV-CLSYKVQCKMDFKIFWLNLKNCN---SPETV 198
Query: 190 LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249
L+ L L RS H ++ + + L+ RL K ++ CL
Sbjct: 199 LE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSK------PYENCLL 248
Query: 250 VIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFAQRATSKVPNVTDIGLKPRGV 308
V+ ++ AK + + + + L+ T++ VTD L
Sbjct: 249 VLLN----------VQNAKAWN---AFNLSCKILL--------TTRFKQVTDF-LSAATT 286
Query: 309 RKVAVI--GGGLMGSGIAT--AHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTR-- 361
+++ L + + L+ L +EV + + + I ++R +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWD 345
Query: 362 --GKLTQDKANNALKMLKGVLDYSEFKD--VDMVIEAVIESVPLKQKIFSELEKACPPHC 417
+ DK ++ VL+ +E++ + + S + +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILL----------S 393
Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP--LLEIVRTERTSAQV---ILDL 472
++ + D+ +V K ++ +P LE+ + I+D
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 473 MTVGKIIKKVPVVVGNCTGFAVNRA---FFPY----------SQSARLLVSLGVDVFR-I 518
I K F+ + + L + +D FR +
Sbjct: 453 Y---NIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFL 503
Query: 519 DSAIRSFGLPIGPFQ-----LLDLAGYGVAAATSKEF---DKAFPDRSFQSPLVDLLLKS 570
+ IR L L Y K + + +R + ++D L K
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFY-------KPYICDNDPKYERLVNA-ILDFLPKI 555
Query: 571 GRN 573
N
Sbjct: 556 EEN 558
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 54/385 (14%), Positives = 99/385 (25%), Gaps = 134/385 (34%)
Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQ--KIFSELEKACPPHCILATNTSTID 427
+ M K +L E + ++ + ++F L
Sbjct: 36 KDVQDMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLL----------------- 72
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMP---LLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
S Q+ ++ F + L+ ++TE+ ++ + I++
Sbjct: 73 --------SKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-----IEQRDR 118
Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD-LAGYG-- 541
+ + N+ F Y+ VS ++ A+ L L+D + G G
Sbjct: 119 L------YNDNQVFAKYN------VSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKT 164
Query: 542 -VAAAT--SKEFDKAFPDRSF-------QSP------LVDLLLKSGRNGKANGKGLYTYE 585
VA S + + F SP L LL + N + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 586 KGSKPKPDPSVLPIIEECRRLSNIMPGGK-PIS------VTEKEIVEMILFPVVNESCRV 638
L I L ++ V + F N SC++
Sbjct: 225 -----------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--F---NLSCKI 268
Query: 639 LEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN-YVYTSLKKWS---------Q 688
L + R V D + A + SL S
Sbjct: 269 L---LTTR-----FKQV---------------TDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 689 LYGNFF--KPSRFLEERATKGIPLV 711
L + +P L P
Sbjct: 306 LLLKYLDCRPQD-LPREVLTTNPRR 329
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 6e-04
Identities = 36/289 (12%), Positives = 71/289 (24%), Gaps = 97/289 (33%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDV--KAIVLTGNG 58
+ ++ + + + P N L + L +V
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLV-----L----------LNVQNAKAW----- 259
Query: 59 GRFSGGFDINVFQKVHGAGDVSLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
F+++ K+ L+ V ++ + L L
Sbjct: 260 ----NAFNLSC--KI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIP----GFG-----GTQRLPRL--VG---LSKAIEM 162
+ + Q LP L P G V L+ IE
Sbjct: 307 L----LKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 163 ML--LSKSITSEEGWKLGLI--DAVVTSEELLKVSRLWA-------LDIAA--------- 202
L L + + +L + A + + L S +W + +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 203 -RRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ-HQACLD 249
+ K S+ S+ L+ K N H++ +D
Sbjct: 419 KQPKESTISIP------SIY----------LELKVKLENEYALHRSIVD 451
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 613 GKPISVTEKE----IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIV 668
G+P + K F +NE+ +++E G V D+D A LG++ P G
Sbjct: 5 GRPQIDSSKATDKINPMDFTFVEINEAVKLVEMG-VATPQDIDTAIKLGLNRPF---GPF 60
Query: 669 FWADAVGANYVYTSLKKWSQLYGN-FFKPSRFLEERATKG 707
A GA + L++ ++ +G F+P++ L+E +
Sbjct: 61 ELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGKLEE 100
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 6/110 (5%)
Query: 476 GKIIKKVPVVVGNCTGFAVNRA--FFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGP 531
G + P + + +N F A LV +GV ID+AI+ P GP
Sbjct: 1 GHSKGR-PQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGP 59
Query: 532 FQLLDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKG 580
F+L G A +E K F + F+ + + +G
Sbjct: 60 FELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGKLEELLKAGKAEG 109
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 41/202 (20%), Positives = 63/202 (31%), Gaps = 56/202 (27%)
Query: 15 VAIITL---INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINV 69
V + + I A +D+ +AI++ + GGR +I
Sbjct: 10 VYVAQIKGQITSYTYDQ-------FDRYITIA-EQDNAEAIIIELDTPGGRADAMMNI-- 59
Query: 70 FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE---GLALGGGLELAMGCHARIAA 126
V I+ K P++ V A G +A+G H A
Sbjct: 60 ---------------------VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMA 98
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVG----------------LSKAIEMMLLSKSIT 170
P T +G LG + P + + A E + S+T
Sbjct: 99 PGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLT 158
Query: 171 SEEGWKLGLIDAVVTS-EELLK 191
EE K G+I+ V ELLK
Sbjct: 159 PEEALKYGVIEVVARDINELLK 180
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 100.0 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 100.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 100.0 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 100.0 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 100.0 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 100.0 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 100.0 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 100.0 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 100.0 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 100.0 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 100.0 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 100.0 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 100.0 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 100.0 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 100.0 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 100.0 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 100.0 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 100.0 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 100.0 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 100.0 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 100.0 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 100.0 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 100.0 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 100.0 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 100.0 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 100.0 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 100.0 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 100.0 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 100.0 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 100.0 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 100.0 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 100.0 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 100.0 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 100.0 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 100.0 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 100.0 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 100.0 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 100.0 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 100.0 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 100.0 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 100.0 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 100.0 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 100.0 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 100.0 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 100.0 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 100.0 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 100.0 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 100.0 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 100.0 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 100.0 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 100.0 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 100.0 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 100.0 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 100.0 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 100.0 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 100.0 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 100.0 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 100.0 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 100.0 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 100.0 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 100.0 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 100.0 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 100.0 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 100.0 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 100.0 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 100.0 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 100.0 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 100.0 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 99.88 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.88 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 99.8 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 99.79 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 99.78 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 99.77 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.75 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.75 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.72 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.69 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.69 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.69 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.69 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.65 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.65 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.64 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.63 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.63 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.63 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.63 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.62 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.62 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.61 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.6 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.57 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.57 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.56 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.55 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.54 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.53 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.53 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.51 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.51 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.51 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.5 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.49 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.49 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.49 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.49 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.48 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.47 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.46 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.46 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.45 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.45 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.44 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.44 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.44 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.43 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.42 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.42 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.42 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.42 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.42 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.41 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.41 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.39 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.39 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.38 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.38 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.38 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.37 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.37 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.35 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.35 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.35 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.34 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.34 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.32 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.31 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.3 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.29 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.27 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.26 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.24 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.22 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.22 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.18 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.18 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.17 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 99.16 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.11 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 99.11 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.1 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.09 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.08 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.06 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 99.06 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.03 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.0 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 98.99 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.97 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.96 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 98.94 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.94 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.45 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 98.89 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.84 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.83 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 98.76 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.75 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.75 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.72 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.67 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.66 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.66 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 98.63 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.62 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.61 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.61 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.61 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.61 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.6 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.59 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 98.58 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.57 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.54 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.53 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.52 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.5 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.5 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.49 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.48 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.4 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.38 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.37 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.37 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.36 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.36 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.32 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 98.31 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.31 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.31 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.3 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 98.29 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.28 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.27 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.27 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.27 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.27 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.25 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 98.24 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.24 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.23 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.23 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.23 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.23 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.22 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.2 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.18 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.17 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.16 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 98.16 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.15 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.13 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.07 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.06 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.05 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.04 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.04 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.03 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.03 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.02 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.0 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 97.99 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.98 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.97 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.95 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.93 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 97.93 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 97.92 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.86 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.86 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.85 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.84 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.83 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.82 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.74 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.74 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.74 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.74 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.74 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 97.67 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.62 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.62 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.62 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.61 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 97.59 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 97.59 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.56 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.44 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.43 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.43 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.43 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.41 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.37 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.36 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.34 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.31 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.31 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.3 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.29 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.25 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.25 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.24 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.24 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.24 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.24 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.2 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.19 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.15 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 97.14 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.12 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 97.12 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.11 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.11 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.1 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.08 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.07 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.06 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.06 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.04 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.03 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.03 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.02 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.02 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.02 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.99 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.97 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.96 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 96.95 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 96.94 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 96.93 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.93 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 96.93 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 96.9 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 96.9 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 96.89 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.89 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.87 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.86 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.86 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.83 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.83 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.82 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.82 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.81 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.79 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.74 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 96.7 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 96.68 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.66 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.65 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.64 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.62 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.61 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.61 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.61 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.6 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.59 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.57 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.54 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.47 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.46 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 96.45 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.41 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.31 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.31 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.29 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.27 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.21 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 96.13 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.13 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.12 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.11 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.11 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.07 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.07 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.07 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.06 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 95.99 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 95.98 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 95.96 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 95.95 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 95.94 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 95.93 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.9 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 95.87 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.83 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 95.8 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 95.78 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.77 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 95.76 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 95.75 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 95.67 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.66 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.66 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.64 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 95.64 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 95.63 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.62 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 95.6 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 95.55 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 95.49 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.45 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.43 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.42 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 95.36 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.35 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.29 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 95.27 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 95.26 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 95.25 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.23 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.23 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 95.22 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.08 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.08 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 95.07 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.04 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 94.98 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 94.97 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 94.97 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 94.97 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 94.97 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 94.92 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 94.91 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 94.9 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 94.89 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 94.85 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 94.74 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 94.74 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 94.74 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 94.72 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 94.71 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 94.63 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 94.59 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 94.59 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 94.53 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 94.49 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 94.45 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 94.43 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 94.42 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 94.4 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.38 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 94.31 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 94.31 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.29 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 94.25 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 94.24 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 94.23 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 94.22 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.22 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 94.08 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 94.06 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 94.06 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 93.99 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 93.97 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 93.94 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 93.94 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 93.93 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 93.92 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 93.88 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 93.88 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 93.86 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 93.85 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 93.85 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 93.85 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 93.84 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 93.84 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 93.83 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 93.83 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 93.81 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 93.77 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 93.77 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.74 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.73 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 93.7 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 93.69 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 93.69 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 93.69 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 93.69 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 93.68 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 93.68 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 93.67 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 93.66 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 93.66 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 93.65 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 93.62 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 93.62 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 93.6 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 93.5 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 93.5 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 93.47 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 93.46 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 93.44 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 93.43 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 93.41 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 93.39 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 93.38 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 93.35 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 93.33 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 93.33 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 93.32 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 93.3 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 93.29 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 93.26 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 93.25 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 93.25 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 93.23 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 93.2 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 93.2 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 93.18 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 93.18 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 93.13 |
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-134 Score=1168.03 Aligned_cols=695 Identities=34% Similarity=0.547 Sum_probs=619.8
Q ss_pred EEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHH
Q 004726 8 MEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSV 87 (733)
Q Consensus 8 ~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (733)
++. +|+|++||||||+.|+||.+|+++|.++++++++|+++|+|||||+|+.||+|+||+++...... ....
T Consensus 25 ~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~-------~~~~ 96 (742)
T 3zwc_A 25 LRL-PHSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG-------LALG 96 (742)
T ss_dssp EEC-STTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSC-------SHHH
T ss_pred EEe-eCCEEEEEeCCCcccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChh-------HHHH
Confidence 445 78999999999999999999999999999999999999999999999999999999998654321 1234
Q ss_pred HHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCC
Q 004726 88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK 167 (733)
Q Consensus 88 ~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~ 167 (733)
+++ ++|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|||++|..+|++|++||+
T Consensus 97 ~~~-~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~ 175 (742)
T 3zwc_A 97 SLV-DEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGK 175 (742)
T ss_dssp HHH-HHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHH-HHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCC
Confidence 666 6799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHHH
Q 004726 168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247 (733)
Q Consensus 168 ~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 247 (733)
+++|+||+++||||+|+|++. .+++.++|++++.+++...+..... ..........+.......+++.++|+|+.++
T Consensus 176 ~i~a~eA~~~GLv~~vv~~d~-~~~A~~~A~~ia~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~~~~A~~~~ 252 (742)
T 3zwc_A 176 YLSADEALRLGILDAVVKSDP-VEEAIKFAQKIIDKPIEPRRIFNKP--VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 252 (742)
T ss_dssp CEEHHHHHHHTSCSEEESSCH-HHHHHHHHHHHTTSCSGGGCGGGSC--CCCCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chhHHHHHHcCCccEecCchh-hHHHHHHHHHHhcCCchhhhhhccc--ccccchhhhhHHHHHHHHhhhccchhHHHHH
Confidence 999999999999999998765 5788999999999887654433222 2222222334444555667788899999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCC---CCCCCCCCCcceEEEEcCCcCcHHHH
Q 004726 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNV---TDIGLKPRGVRKVAVIGGGLMGSGIA 324 (733)
Q Consensus 248 ~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~---~~~~~~~~~~~kI~VIG~G~mG~~iA 324 (733)
+++++.+...+++++++.|++.|..++.|+++++++++|+++|+++|.+.. ...+..+++|+||+|||+|+||++||
T Consensus 253 ~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~MG~gIA 332 (742)
T 3zwc_A 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIA 332 (742)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccHHHHHHH
Confidence 999999999999999999999999999999999999999999999886542 12345577899999999999999999
Q ss_pred HHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEeccCChHHHHH
Q 004726 325 TAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQK 404 (733)
Q Consensus 325 ~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avpe~~~~k~~ 404 (733)
..++++|++|+++|++++.++++.+.+...++..+.++..+.. .....++..+++++.+++||+|||||||++++|++
T Consensus 333 ~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~l~iK~~ 410 (742)
T 3zwc_A 333 ISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKK 410 (742)
T ss_dssp HHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSCHHHHHH
T ss_pred HHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEeccccHHHHHH
Confidence 9999999999999999999999999999888887776554432 22345788888899999999999999999999999
Q ss_pred HHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004726 405 IFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484 (733)
Q Consensus 405 v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v 484 (733)
+|+++++++++++|++||||+++++++++.+.+|+||+|+|||||++.+++||||+++.|++++++.+.++++.+||+||
T Consensus 411 vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV 490 (742)
T 3zwc_A 411 VFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490 (742)
T ss_dssp HHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC-------
Q 004726 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR------- 557 (733)
Q Consensus 485 ~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~------- 557 (733)
+++|+||||+||++.++++||++++++|+++++||.++..+|+|||||+++|++|||+.+++.+.+....++.
T Consensus 491 ~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~~~~~~~ 570 (742)
T 3zwc_A 491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVR 570 (742)
T ss_dssp ECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSCTTCCTT
T ss_pred ccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCChHHHHHHhCHHHHHHHHHHHHhhCcccCccchhh
Confidence 9999999999999999999999999999999999999988999999999999999999999999876543321
Q ss_pred ----CCCcHHHHHHHHcCCCCcccCccccccCCCC--CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHH
Q 004726 558 ----SFQSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPV 631 (733)
Q Consensus 558 ----~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 631 (733)
..+++++++|+++|++|+|||+|||+|++++ ...+|+++..++...+....+.+ ..++.++|.+|+++++
T Consensus 571 ~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ei~~R~l~~~ 646 (742)
T 3zwc_A 571 KRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTISKEEILERCLYSL 646 (742)
T ss_dssp EETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCC----CCCCHHHHHHHHHHHH
T ss_pred hcccccccHHHHHHHHCCCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCc----CCCCHHHHHHHHHHHH
Confidence 1146799999999999999999999997643 24577777777766555444332 3578899999999999
Q ss_pred HHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC--CCCCCHHHHHHHHCCCC
Q 004726 632 VNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGIP 709 (733)
Q Consensus 632 ~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~--~~~p~~~l~~~~~~g~~ 709 (733)
+||+++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++++++.+|+ +|+|+++|++|+++|..
T Consensus 647 ~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~ 726 (742)
T 3zwc_A 647 INEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSP 726 (742)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCC
T ss_pred HHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999995 89999999999999987
Q ss_pred c--cccceeecCC
Q 004726 710 L--VRIIFHRFSN 720 (733)
Q Consensus 710 g--~g~gfy~y~~ 720 (733)
+ .++|||.|..
T Consensus 727 ~f~~~~~~~~~~~ 739 (742)
T 3zwc_A 727 PLKEWQSLAGPHG 739 (742)
T ss_dssp CGGGHHHHHSTTC
T ss_pred cccccccccCCCC
Confidence 6 5789998864
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-125 Score=1101.00 Aligned_cols=703 Identities=58% Similarity=0.962 Sum_probs=592.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccCCCCchhhhhccCCC--
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAG-- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~-- 77 (733)
|+++.++++..+++|++||||||+.|+||.+|+++|.++++.++.|+++|+||||| |+ .||+|+|++++.......
T Consensus 4 ~~~~~i~~~~~~~~va~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~ 82 (725)
T 2wtb_A 4 RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVK 82 (725)
T ss_dssp ---CEEEEEECTTSEEEEEEECTTTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred CcCCeEEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhh
Confidence 66778999833789999999999889999999999999999999999999999999 76 999999999885422110
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
....+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~ 161 (725)
T 2wtb_A 83 EPKAGYISIDIIT-DLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLT 161 (725)
T ss_dssp CCSSSHHHHHCCC-CCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHH-HHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHH
Confidence 0112222233444 468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccC-ch--hhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR-KP--WIRSLHRTDKLGSLSEAREVLKLARLQA 234 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (733)
+|++|++||++++|+||+++||||+|||++++++++.++|++++..+ |. ..+. + ............+..++...
T Consensus 162 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~--~-~~~~~~~~~~~~~~~a~~~~ 238 (725)
T 2wtb_A 162 KALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSK--T-DKLPPLGEAREILTFAKAQT 238 (725)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGC--C-TTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhh--c-cccCccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998862 22 2210 0 01112222233555556655
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEE
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVI 314 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kI~VI 314 (733)
++..+.|||+..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++....+..+++|+||+||
T Consensus 239 ~~~~~g~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VI 318 (725)
T 2wtb_A 239 LKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAII 318 (725)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEE
T ss_pred HHhccCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEEE
Confidence 44334499999999999999999999999999999999999999999999999999999988632113345678999999
Q ss_pred cCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEe
Q 004726 315 GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEA 394 (733)
Q Consensus 315 G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~a 394 (733)
|+|.||++||..++++|++|++||++++.++++.+.+++.+++++++|.+++.+.....++++.+++++++++||+||+|
T Consensus 319 GaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIea 398 (725)
T 2wtb_A 319 GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEA 398 (725)
T ss_dssp CCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEEC
T ss_pred cCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEEc
Confidence 99999999999999999999999999999999988899999999999999888888888899999999889999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHH
Q 004726 395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474 (733)
Q Consensus 395 vpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~ 474 (733)
|||+.++|+.+++++.+++++++||+||||+++++++++.+.++++++|+|||+|++.++++|+++++.|++++++.+.+
T Consensus 399 Vpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~ 478 (725)
T 2wtb_A 399 VIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLD 478 (725)
T ss_dssp CCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhC
Q 004726 475 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAF 554 (733)
Q Consensus 475 l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~ 554 (733)
+++.+|+.|+++++.|||++||++.++++|++.++++|+++++||.++.++|+|||||+++|++|||+.+++.+.+++.+
T Consensus 479 l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~g~p~Gp~~l~D~vGld~~~~i~~~~~~~~ 558 (725)
T 2wtb_A 479 VGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENF 558 (725)
T ss_dssp HHHHTTCEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999998
Q ss_pred CCC-CCCcHHHHHHHHcCCCCcccCccccccCCCCCCCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHH
Q 004726 555 PDR-SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVN 633 (733)
Q Consensus 555 ~~~-~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ 633 (733)
+++ +.| +++++|+++|++|+|||+|||+|++.++..+|+++..++...+....+.+..+...+++++|++|++++++|
T Consensus 559 ~~~~~~~-~~l~~~v~~g~lG~k~g~GfY~y~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~n 637 (725)
T 2wtb_A 559 SERTYKS-MIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVN 637 (725)
T ss_dssp GGGCCCC-THHHHHHTTC---------------------CCCCCTTSHHHHHHTCCSCCCTTTTCCHHHHHHHHHHHHHH
T ss_pred CCccCCh-HHHHHHHHCCCceecCCceeEeCCCCccCCCCHHHHHHHHhhhhhccccchhhcccCCHHHHHHHHHHHHHH
Confidence 876 446 999999999999999999999996322234788887776644321111111111236789999999999999
Q ss_pred HHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCCC
Q 004726 634 ESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIP 709 (733)
Q Consensus 634 ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~ 709 (733)
|+++|++|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+++.+|++|.|+++|++|+++|+.
T Consensus 638 ea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~g~~ 713 (725)
T 2wtb_A 638 EACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVL 713 (725)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHTCC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998763
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-124 Score=1092.23 Aligned_cols=692 Identities=31% Similarity=0.526 Sum_probs=612.7
Q ss_pred CcEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccCCCCchhhhhccCCC--c
Q 004726 4 PRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAG--D 78 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~--~ 78 (733)
+.++++..+++|++|||||| +.|+||.+|+++|.++++.++.|+++|+||||| |+ .||+|+|++++....... .
T Consensus 6 ~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~ 84 (715)
T 1wdk_A 6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDAE 84 (715)
T ss_dssp SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHHH
T ss_pred CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHHH
Confidence 46888833789999999999 579999999999999999999999999999999 76 999999999986532111 1
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+....++++ ++|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 85 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~ 163 (715)
T 1wdk_A 85 LIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN 163 (715)
T ss_dssp HHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHH
Confidence 111223345666 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccC--CC-CCcHHHHHHHHHHHH-HH
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTD--KL-GSLSEAREVLKLARL-QA 234 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-~~ 234 (733)
|++|++||++++|+||+++||||+|+|++++++++.++|++++....++.... +.. +. .........+..++. ..
T Consensus 164 A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~k~~~~ 242 (715)
T 1wdk_A 164 AVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKR-QPKLEKLKLNAIEQMMAFETAKGFVA 242 (715)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHH-GGGGSCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhc-ccccCccccCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988621111110 000 00 000011112333444 35
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEE
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVI 314 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kI~VI 314 (733)
++++++|||+..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++.+. + .+++++||+||
T Consensus 243 ~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~-~-~~~~i~kV~VI 320 (715)
T 1wdk_A 243 GQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYD-K-IAKDVKQAAVL 320 (715)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCSSEEEE
T ss_pred HhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCC-C-ccccCCEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998765322 2 45678899999
Q ss_pred cCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEe
Q 004726 315 GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEA 394 (733)
Q Consensus 315 G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~a 394 (733)
|+|+||++||..++++|++|++||+++++++++.+.+++.+++++++|.+++++.+..+++++.+++++++++||+||+|
T Consensus 321 GaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIea 400 (715)
T 1wdk_A 321 GAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEA 400 (715)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEEEC
T ss_pred CCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEEEc
Confidence 99999999999999999999999999999999988999999999999999998888888899988888889999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHH
Q 004726 395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474 (733)
Q Consensus 395 vpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~ 474 (733)
|||+.++|+.+++++.+++++++||+||||+++++++++.+.++++++|+|||+|++.++++|+++++.|++++++.+.+
T Consensus 401 V~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~ 480 (715)
T 1wdk_A 401 VVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVA 480 (715)
T ss_dssp CCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhC
Q 004726 475 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAF 554 (733)
Q Consensus 475 l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~ 554 (733)
+++.+|+.|+++++.|||++||++.++++|++.++++|+++++||.++.++|+|||||+++|++|||+.+++.+.+++.+
T Consensus 481 l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G~p~Gp~~l~D~vGld~~~~i~~~~~~~~ 560 (715)
T 1wdk_A 481 YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGF 560 (715)
T ss_dssp HHHHTTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999888
Q ss_pred CCCCCCc--HHHHHHHHcCCCCcccCccccccC-C--CC-CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHH
Q 004726 555 PDRSFQS--PLVDLLLKSGRNGKANGKGLYTYE-K--GS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMIL 628 (733)
Q Consensus 555 ~~~~~~~--~~l~~~v~~g~~G~k~g~Gfy~y~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~ 628 (733)
++++.|+ +++++|+++|++|+|||+|||+|+ + ++ +..+|+++..++...+. + ...+++++|++|++
T Consensus 561 ~~~~~~~~~~~l~~~v~~g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~i~~r~l 632 (715)
T 1wdk_A 561 PDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-----E---QRDVTDEDIINWMM 632 (715)
T ss_dssp HHHHCCSSCCHHHHHHHTTCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCC-----C---CCCCCHHHHHHHHH
T ss_pred CCccCCChHHHHHHHHhCchhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhcc-----C---ccCCCHHHHHHHHH
Confidence 7766677 899999999999999999999996 3 22 33467776666543211 1 12367899999999
Q ss_pred HHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCC
Q 004726 629 FPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 708 (733)
Q Consensus 629 ~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~ 708 (733)
++++||+++|++|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+ +.+|++|.|+++|++|+++|+
T Consensus 633 ~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~p~~~l~~~~~~g~ 711 (715)
T 1wdk_A 633 IPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAKLREMAKNGQ 711 (715)
T ss_dssp HHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999 889999999999999999886
Q ss_pred C
Q 004726 709 P 709 (733)
Q Consensus 709 ~ 709 (733)
.
T Consensus 712 ~ 712 (715)
T 1wdk_A 712 S 712 (715)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-79 Score=673.83 Aligned_cols=396 Identities=28% Similarity=0.488 Sum_probs=356.9
Q ss_pred CCCCCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 303 ~~~~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
..+++++||+|||+|+||++||..++++|++|++||++++ ++.+.+++.+++++++|.++.++.+..++++.+++++
T Consensus 49 ~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl 125 (460)
T 3k6j_A 49 SEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF 125 (460)
T ss_dssp CCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG
T ss_pred CCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH
Confidence 3467789999999999999999999999999999999998 4566788889999999999999999999999999999
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCC
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTE 462 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~ 462 (733)
+++++||+|||||||++++|+++|+++.+.+++++||+||||+++++++++.+.+|++|+|+|||+|++.++++||+++.
T Consensus 126 ~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~ 205 (460)
T 3k6j_A 126 HKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGS 205 (460)
T ss_dssp GGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCS
T ss_pred HHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEEEEeCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHH-HcCCCHHHHHHHHHhcCCCccHHHHHHhhchH
Q 004726 463 RTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLV-SLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 541 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~-~~Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld 541 (733)
.|++++++++.++++.+|++|++++|.|||++||++.++++||+.++ ++|++|++||++++++|+|||||+++|++|||
T Consensus 206 ~Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~~~G~pmGPf~l~D~vGlD 285 (460)
T 3k6j_A 206 HTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFD 285 (460)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTBSSCHHHHHHHHCTH
T ss_pred CCCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCHHHHHHHhchH
Confidence 99999999999999999999999999999999999999999999999 77999999999998899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccccccCCCCC-CCCCCCchhHHHHHhhhccCCCCCCCcccch
Q 004726 542 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSVLPIIEECRRLSNIMPGGKPISVTE 620 (733)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (733)
+.+++.+.+ . ..+++++++||++|++|+|||+|||+|+++++ +.+++++..++...+....+. ...+++
T Consensus 286 ~~~~i~~~~----~--~~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 355 (460)
T 3k6j_A 286 VMEKLKKEN----G--LEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSN----IQIIND 355 (460)
T ss_dssp HHHHHHHHS----C--CCCCHHHHHHHHTTCCBGGGTBSSSEECTTTCCEECCHHHHHHHHHC---CCCS----SCCCSH
T ss_pred HHHHHHHHh----c--cCchHHHHHHHHCCCCeeecCCEEEECCCCCCCCCCCHHHHHHHHHHHHhcCCC----cccCCh
Confidence 999998765 1 23568999999999999999999999987543 456776666654433222222 234788
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCC--CCCCH
Q 004726 621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSR 698 (733)
Q Consensus 621 ~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~--~~p~~ 698 (733)
++|++|++++++||+++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|++.+|++ |+|++
T Consensus 356 ~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~p~~ 435 (460)
T 3k6j_A 356 QDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIVAD 435 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 9999999999999999999999998999999999999999999999999999999999999999999999997 99999
Q ss_pred HHHHHHHCCCCcc
Q 004726 699 FLEERATKGIPLV 711 (733)
Q Consensus 699 ~l~~~~~~g~~g~ 711 (733)
+|++|+++|++|.
T Consensus 436 ~L~~~a~~g~~~~ 448 (460)
T 3k6j_A 436 ALKTANVSTGSSG 448 (460)
T ss_dssp HHHHHC-------
T ss_pred HHHHHHHcCCCcc
Confidence 9999999999993
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-74 Score=638.69 Aligned_cols=406 Identities=31% Similarity=0.478 Sum_probs=356.6
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
++++||+|||+|+||++||..|+++|++|++||+++++++++.+.+.+.+++++++|.++.++.+..++++.++++++++
T Consensus 3 m~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (483)
T 3mog_A 3 LNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHAL 82 (483)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGG
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHh
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~ 465 (733)
++||+||+||||+.++|+++++++.+.+++++||+||||+++++.+++.+.++++++|+|||+|++.++++|++++..|+
T Consensus 83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts 162 (483)
T 3mog_A 83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATA 162 (483)
T ss_dssp GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCC
T ss_pred cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHH
Q 004726 466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA 543 (733)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~ 543 (733)
+++++.+.++++.+|++++++++.|||++||++.++++||+.++++|. ++++||+++ .++|+|||||+++|++|+|+.
T Consensus 163 ~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~ 242 (483)
T 3mog_A 163 AEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVN 242 (483)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHH
Confidence 999999999999999999999999999999999999999999999986 899999999 689999999999999999999
Q ss_pred HHHHHHHHHhC-CCC-CCCcHHHHHHHHcCCCCcccCccccccCCCCCCCC-----CCCchhHHHHH-------------
Q 004726 544 AATSKEFDKAF-PDR-SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP-----DPSVLPIIEEC------------- 603 (733)
Q Consensus 544 ~~~~~~l~~~~-~~~-~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~-----~~~~~~~~~~~------------- 603 (733)
+++++.+++.+ +++ +.|++++++|+++|++|+|||+|||+|++++.... ++.....+...
T Consensus 243 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 322 (483)
T 3mog_A 243 FAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLL 322 (483)
T ss_dssp HHHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTSCCCCCCCCCCCCGGGCCSCEEECSTTEEEETTEEE
T ss_pred HHHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCCCCCCcccccCCCchhHHHHHHHHhcccccccchhh
Confidence 99999998876 343 34889999999999999999999999976322111 11110000000
Q ss_pred --------------hh----hccC--------C------------------CCCC-Cc--ccchHHHHHHHHHHHHHHHH
Q 004726 604 --------------RR----LSNI--------M------------------PGGK-PI--SVTEKEIVEMILFPVVNESC 636 (733)
Q Consensus 604 --------------~~----~~~~--------~------------------~~~~-~~--~~~~~~i~~r~~~~~~~ea~ 636 (733)
.. ..++ . .-++ +. .-+++||+||++.+++|||+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~~nEA~ 402 (483)
T 3mog_A 323 IETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEAL 402 (483)
T ss_dssp EECSSSCHHHHHHHHTSCEEEEECCSSSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHHHHHHH
T ss_pred cccCCcchHHHhhccccceeeeeccccceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHHHHHHH
Confidence 00 0000 0 0011 00 12578999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHCCCCccccce
Q 004726 637 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFLEERATKGIPLVRIIF 715 (733)
Q Consensus 637 ~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~~~l~~~~~~g~~g~g~gf 715 (733)
+|++|||+ +|+|||.+|++|+|||+ |||+|+|.+|+|.++++++.|++.+|+ +|.|+++|++|+++|++|++.|-
T Consensus 403 ~~l~eGva-s~~diD~a~~~G~G~P~---GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~~~ 478 (483)
T 3mog_A 403 DALQKGVA-SEQDIDTAMRLGVNYPY---GPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESEGH 478 (483)
T ss_dssp HHHHTTSS-CHHHHHHHHHHHSCCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC-----
T ss_pred HHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCCCc
Confidence 99999998 99999999999999999 999999999999999999999999985 99999999999999999976654
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-74 Score=640.70 Aligned_cols=430 Identities=33% Similarity=0.545 Sum_probs=370.8
Q ss_pred CCHHHHHHHHHHHhhhhhcCCCCC--CC-CCCCCCCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 275 MLDTSRGLVHVFFAQRATSKVPNV--TD-IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 275 ~s~~~~~~i~aF~~kr~~~~~~~~--~~-~~~~~~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
.|++++++++.|+.+|..+|.++. +. .+..+++++||+|||+|.||++||..|+++|++|++||++++.++++.+.+
T Consensus 1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i 80 (463)
T 1zcj_A 1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII 80 (463)
T ss_dssp -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 489999999999999999885431 11 133456788999999999999999999999999999999999999998888
Q ss_pred HHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHH
Q 004726 352 EANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (733)
Q Consensus 352 ~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l 431 (733)
++.+...+++|.+++.+.+... ...+++++.+++||+||+|||++.++|+.+++++.+.+++++||+||||+++++++
T Consensus 81 ~~~l~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l 158 (463)
T 1zcj_A 81 TFTLEKEASRAHQNGQASAKPK--LRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI 158 (463)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCC--EEEESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH--hhhcCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence 8777777766644322111111 22356677899999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHc
Q 004726 432 GEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL 511 (733)
Q Consensus 432 ~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~ 511 (733)
++.+.++++++|+|||+|++.++++|+++++.|++++++.+.++++.+|++++++++.|||++||++.++++|++.++++
T Consensus 159 a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~ 238 (463)
T 1zcj_A 159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEE 238 (463)
T ss_dssp HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHH---HhCC-------CCC-CCcHHHHHHHHcCCCCcccCcc
Q 004726 512 GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFD---KAFP-------DRS-FQSPLVDLLLKSGRNGKANGKG 580 (733)
Q Consensus 512 Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~---~~~~-------~~~-~~~~~l~~~v~~g~~G~k~g~G 580 (733)
|+++++||.+++++|+|+|||+++|.+|||+..++++.+. +.++ +.. .+++++++|+++|++|+|||+|
T Consensus 239 G~~~~~id~~~~~~g~p~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~G 318 (463)
T 1zcj_A 239 GSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKG 318 (463)
T ss_dssp TCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBS
T ss_pred CCCHHHHHHHHHHcCCCCcHHHHHHHcchHHHHHHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCe
Confidence 9999999999999999999999999999999999998772 2211 111 1368999999999999999999
Q ss_pred ccccCCCCC--CCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhc
Q 004726 581 LYTYEKGSK--PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGM 658 (733)
Q Consensus 581 fy~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~ 658 (733)
||+|+++++ ...++++..++.......++.+ ..+++++|+||++.+++|||++|++|||+++++|||.+|++|+
T Consensus 319 fy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~ 394 (463)
T 1zcj_A 319 WYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGY 394 (463)
T ss_dssp SEEESSTTCSCEEECHHHHHHHHHHHHHTTCCC----CCCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHS
T ss_pred eccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCc----ccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence 999964222 2356666666654433222222 2367899999999999999999999999988999999999999
Q ss_pred CCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC--CCCCCHHHHHHHHCCCCc
Q 004726 659 SFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGIPL 710 (733)
Q Consensus 659 gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~--~~~p~~~l~~~~~~g~~g 710 (733)
|||+|+||||+++|.+|+|.++++++.|++.+|+ +|+|+++|++|+++|+.|
T Consensus 395 G~p~~~gGP~~~~D~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~~~ 448 (463)
T 1zcj_A 395 GWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPP 448 (463)
T ss_dssp CCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCC
T ss_pred CCCCCCcChHHHHHHhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999998 899999999999999876
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-54 Score=442.42 Aligned_cols=250 Identities=28% Similarity=0.373 Sum_probs=229.3
Q ss_pred EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccch
Q 004726 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
|.+|+ +|+|++|||||| +.|+||.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++...... ......
T Consensus 2 vl~E~-~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~~~ 78 (254)
T 3hrx_A 2 VLKER-QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPD--YEAHLR 78 (254)
T ss_dssp EEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCC--HHHHTH
T ss_pred eEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchh--hHHHHH
Confidence 56788 889999999999 58999999999999999999999999999999999999999999998653221 222334
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
..+.++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|++
T Consensus 79 ~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~lll 157 (254)
T 3hrx_A 79 RYNRVV-EALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLL 157 (254)
T ss_dssp HHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHH-HHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhh
Confidence 455666 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHH
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (733)
||++++|+||+++||||+|||++++++++.+++++++..++.+++
T Consensus 158 tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 202 (254)
T 3hrx_A 158 LSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYA----------------------------------- 202 (254)
T ss_dssp HCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-----------------------------------
T ss_pred cCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHH-----------------------------------
Confidence 999999999999999999999999999999999999998875432
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.+...+++++++.|...+..++.|+|++|++++|++||+|+++
T Consensus 203 -~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~ 252 (254)
T 3hrx_A 203 -LTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQ 252 (254)
T ss_dssp -HHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence 56788999999999999999999999999999999999999999999864
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-53 Score=443.47 Aligned_cols=254 Identities=25% Similarity=0.328 Sum_probs=224.5
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc---
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--- 79 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~--- 79 (733)
+.|.+++ ++||++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus 15 e~il~~~-~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 93 (274)
T 4fzw_C 15 EFILSHV-EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLG 93 (274)
T ss_dssp -CEEEEE-ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHH
T ss_pred ccEEEEE-ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHH
Confidence 5788998 8899999999995 7999999999999999999999999999999999999999999987643322111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+....+.++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 94 ~~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 172 (274)
T 4fzw_C 94 MSVERFYNPLV-RRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARA 172 (274)
T ss_dssp HHHHHTHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHH-HHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHH
Confidence 12222344555 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|||++++++++.++|++++..|+.+++
T Consensus 173 ~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 222 (274)
T 4fzw_C 173 MGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLG------------------------------ 222 (274)
T ss_dssp HHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred HHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875432
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|+++
T Consensus 223 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~ 272 (274)
T 4fzw_C 223 ------LIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFT 272 (274)
T ss_dssp ------HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCC
T ss_pred ------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence 56788999999999999999999999999999999999999999999864
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-53 Score=439.52 Aligned_cols=251 Identities=30% Similarity=0.453 Sum_probs=229.5
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+.+.+++ +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...... ...
T Consensus 5 s~l~ve~-~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~---~~~ 80 (258)
T 4fzw_A 5 SELIVSR-QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLA---ATL 80 (258)
T ss_dssp CEEEEEE-ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHH---HHH
T ss_pred CcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhh---hHH
Confidence 3688999 8999999999995 7999999999999999999999999999999999999999999988653211 112
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
......++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 81 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l 159 (258)
T 4fzw_A 81 NDTRPQLW-ARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKM 159 (258)
T ss_dssp TCSHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred HhHHHHHH-HHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHH
Confidence 22344566 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
++||++++|+||+++||||+|||++++++++.++++++++.+|.+++
T Consensus 160 lltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------------- 206 (258)
T 4fzw_A 160 VLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQ--------------------------------- 206 (258)
T ss_dssp HHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH---------------------------------
T ss_pred HHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.++
T Consensus 207 ---~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~ 256 (258)
T 4fzw_A 207 ---AAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFK 256 (258)
T ss_dssp ---HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred ---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence 56788999999999999999999999999999999999999999999864
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=440.16 Aligned_cols=268 Identities=21% Similarity=0.335 Sum_probs=238.8
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHH-HHHHHhhccccccCc-cc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGVLDY-SE 384 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~-~~ 384 (733)
.++||+|||+|+||++||..++++|++|+++|++++.++++.+.+++.+..++++|.++.. ..++.++++..++++ ++
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a 84 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA 84 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence 3679999999999999999999999999999999999999999999999999999988754 566778899999998 67
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
+++||+|||||||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+|+||||+++.|
T Consensus 85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T 164 (319)
T 3ado_A 85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET 164 (319)
T ss_dssp TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004726 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA 538 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p---~Gpf~~~D~~ 538 (733)
++++++++.+|++.+|++|+++ +|+||||+||++.++++||++++++|+ +++|||.++ .++|+| ||||+++|++
T Consensus 165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~ 244 (319)
T 3ado_A 165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN 244 (319)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence 9999999999999999999866 899999999999999999999999997 999999999 788886 8999999999
Q ss_pred chHHHHHHHHHHHHhCCCCCCCcHHHHHH-HHcCCCCcccCccccccC
Q 004726 539 GYGVAAATSKEFDKAFPDRSFQSPLVDLL-LKSGRNGKANGKGLYTYE 585 (733)
Q Consensus 539 Gld~~~~~~~~l~~~~~~~~~~~~~l~~~-v~~g~~G~k~g~Gfy~y~ 585 (733)
|+|+...+.+ +. +.++.+ -+.|+.+.++|+++|+|.
T Consensus 245 G~~~~~~~~~-~~----------~~~~~~~~~~~~~p~~~~~~~~k~~ 281 (319)
T 3ado_A 245 AEGMLSYCDR-YS----------EGMKRVLKSFGSIPEFSGATVEKVN 281 (319)
T ss_dssp TTSHHHHHHH-HH----------HHHHHHHHTCCCCCCCCHHHHHHHH
T ss_pred CccHHHHHHH-hh----------HhHHHHHHHcCcccccchHHHHHHH
Confidence 9987554322 21 122222 233666666666666553
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-52 Score=431.34 Aligned_cols=256 Identities=27% Similarity=0.462 Sum_probs=231.7
Q ss_pred CCCCcEEEE-EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCC
Q 004726 1 MAAPRVTME-VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~~v~~~-~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~ 77 (733)
|+|+.|.++ . +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.... ..
T Consensus 5 m~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~ 82 (265)
T 3kqf_A 5 LQLQNISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMN-EE 82 (265)
T ss_dssp --CCSEEEECC-STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCC-HH
T ss_pred ccCCeEEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccC-HH
Confidence 678899999 7 8899999999995 6999999999999999999999999999999999 8999999999986532 11
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
....+....+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 161 (265)
T 3kqf_A 83 QVRHAVSMIRTTM-EMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG 161 (265)
T ss_dssp HHHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHH
Confidence 1222333445666 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
+|++|++||++++|+||+++||||+|+|++++++++.++|++++..+|.++
T Consensus 162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~----------------------------- 212 (265)
T 3kqf_A 162 RAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAV----------------------------- 212 (265)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH-----------------------------
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999887543
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus 213 -------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3kqf_A 213 -------RLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYK 263 (265)
T ss_dssp -------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCCC
T ss_pred -------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 356788999989999999999999999999999999999999999998764
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=430.63 Aligned_cols=255 Identities=37% Similarity=0.616 Sum_probs=230.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
|+++.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........+
T Consensus 5 ~~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (261)
T 3pea_A 5 LKFLSVRV-EDHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATEL 83 (261)
T ss_dssp CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHH
T ss_pred ccceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHH
Confidence 46899999 89999999999966999999999999999999999999999999999999999999998653221111122
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
....+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l 162 (261)
T 3pea_A 84 AQLGQVTF-ERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEM 162 (261)
T ss_dssp HHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence 23334556 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
++||++++|+||+++||||+|+|++++++++.++|++++..+|.++
T Consensus 163 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~---------------------------------- 208 (261)
T 3pea_A 163 MLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATA---------------------------------- 208 (261)
T ss_dssp HHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH----------------------------------
T ss_pred HHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999887543
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus 209 --~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f~ 259 (261)
T 3pea_A 209 --RAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFS 259 (261)
T ss_dssp --HHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCC
T ss_pred --HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 356788888888889999999999999999999999999999999998864
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-52 Score=434.06 Aligned_cols=258 Identities=32% Similarity=0.423 Sum_probs=238.7
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.-+||+|||+|+||++||.+|+ +|++|++||+++++++++.+.+ .+..+++++++++++.++
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l-----------------~~~~~~~i~~~~~~~~~~ 72 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQI-----------------PEELLSKIEFTTTLEKVK 72 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHS-----------------CGGGGGGEEEESSCTTGG
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHH-----------------HHHHhCCeEEeCCHHHHc
Confidence 3479999999999999999999 9999999999999988875430 133456788788887799
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+||||+.++|+.+|++++.. +++|++||||+++++++++.+.++.+++|+|||+|++.++++|+++++.|++
T Consensus 73 ~aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~ 150 (293)
T 1zej_A 73 DCDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDS 150 (293)
T ss_dssp GCSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCH
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCH
Confidence 99999999999999999999999877 8999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCc---cHHHHHHhhchHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPI---GPFQLLDLAGYGV 542 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~-~~~G~p~---Gpf~~~D~~Gld~ 542 (733)
++++++.++++.+|++|++++|. |++||++.++++||+.++++|++|++||.++ .++|+|+ |||+++|++|+|+
T Consensus 151 ~~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~ 228 (293)
T 1zej_A 151 KTVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDV 228 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHH
Confidence 99999999999999999999987 9999999999999999999999999999999 7899999 9999999999999
Q ss_pred HHHHHHHHHHhCCC-CCCCcHHHHHHHHcCCCCcccCccccccCC
Q 004726 543 AAATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEK 586 (733)
Q Consensus 543 ~~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~ 586 (733)
++++++.+++.+++ ++.|++++++|+++|++|+|||+|||+|++
T Consensus 229 ~~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~ 273 (293)
T 1zej_A 229 AYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP 273 (293)
T ss_dssp HHHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred HHHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence 99999999999887 444889999999999999999999999954
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-52 Score=429.25 Aligned_cols=258 Identities=21% Similarity=0.310 Sum_probs=229.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|+.|.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 M~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (268)
T 3i47_A 1 MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEE 79 (268)
T ss_dssp -CCCSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHH
T ss_pred CCCCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHH
Confidence 8999999999 8999999999995 6999999999999999999999999999999999999999999998653222111
Q ss_pred --cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 80 --SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 80 --~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
........+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~ 157 (268)
T 3i47_A 80 ENLEDSLVLGNLM-YSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGER 157 (268)
T ss_dssp HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHH
Confidence 11122344556 67999999999999999999999999999999999999999999999999999988 799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
+|++|++||++++|+||+++||||+|||++++++++.++|++|+..||.+++
T Consensus 158 ~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 209 (268)
T 3i47_A 158 AAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAVK---------------------------- 209 (268)
T ss_dssp HHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred HHHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~-~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|++++.....++++ .++.|.+.+..++.|+|++|++++|++||+|.+...
T Consensus 210 --------~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~~ 262 (268)
T 3i47_A 210 --------NSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNEG 262 (268)
T ss_dssp --------HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC--
T ss_pred --------HHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence 5678888888888877 689999999999999999999999999999997654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-52 Score=434.14 Aligned_cols=275 Identities=29% Similarity=0.423 Sum_probs=256.2
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcC-CCCHHHHHHHhhccccccCc-cc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.++||+|||+|.||++||..++++|++|++||+++++++++.+.+.+.+...+++| .++..+.+....++..++++ +.
T Consensus 3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 82 (283)
T 4e12_A 3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA 82 (283)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence 46899999999999999999999999999999999999999999999999988888 78877778888888888888 46
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
+++||+||+|||+++++++.+++++.+.+++++|++||||+++++++++.+.++.+++|+||++|++.++++|++++..|
T Consensus 83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t 162 (283)
T 4e12_A 83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKT 162 (283)
T ss_dssp TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTS
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004726 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld 541 (733)
++++++.+.++++.+|+.++++ ++.|||++||++.++++||++++++|. +|++||+++ .++|+|+|||+++|++|||
T Consensus 163 ~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld 242 (283)
T 4e12_A 163 DPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLT 242 (283)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHH
Confidence 9999999999999999999999 799999999999999999999999985 999999999 7899999999999999999
Q ss_pred HHHHHHHHHHHhCCCC-CCCcHHHHHHHHcCCCCcccCcccccc
Q 004726 542 VAAATSKEFDKAFPDR-SFQSPLVDLLLKSGRNGKANGKGLYTY 584 (733)
Q Consensus 542 ~~~~~~~~l~~~~~~~-~~~~~~l~~~v~~g~~G~k~g~Gfy~y 584 (733)
+.+++.++ ..++. ..|++++++||++|++|+|||+|||+|
T Consensus 243 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y 283 (283)
T 4e12_A 243 TAYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY 283 (283)
T ss_dssp HHHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred HHHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence 99999883 22222 237789999999999999999999998
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-52 Score=432.18 Aligned_cols=256 Identities=24% Similarity=0.383 Sum_probs=229.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|+.|.++. +++|++||||||+ .|+||.+|+++|.++++.+ |+++|+|||||.|++||+|+|++++..... ...
T Consensus 13 m~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~ 88 (275)
T 3hin_A 13 ADPSTLVVDT-VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERDA-TEG 88 (275)
T ss_dssp CCGGGEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCCCH-HHH
T ss_pred CCCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhccCh-hhH
Confidence 6678899999 8999999999995 8999999999999999999 579999999999999999999998865211 111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.......++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 89 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 167 (275)
T 3hin_A 89 LVHSQTWHRVF-DKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARM 167 (275)
T ss_dssp HHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHH
Confidence 12223345566 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|||++++.+++.++|++++..+|.++
T Consensus 168 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~------------------------------- 216 (275)
T 3hin_A 168 ADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLTN------------------------------- 216 (275)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHH-------------------------------
T ss_pred HHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999887543
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
..+|++++.+...+++++++.|...+..++.|+|++|++++|++||+|++...
T Consensus 217 -----~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~~ 269 (275)
T 3hin_A 217 -----FAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVREG 269 (275)
T ss_dssp -----HHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC---
T ss_pred -----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 35678888888899999999999999999999999999999999999997553
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-52 Score=427.85 Aligned_cols=254 Identities=32% Similarity=0.446 Sum_probs=231.3
Q ss_pred CCCCcEEEEEecCc-EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDG-VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~-i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+|+.|.++. +++ |++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 6 m~~~~i~~~~-~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~- 83 (263)
T 3moy_A 6 TTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQ- 83 (263)
T ss_dssp CCCSSEEEEC-CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHH-
T ss_pred CCCCeEEEEE-eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchh-
Confidence 7788999999 566 9999999996 69999999999999999999999999999999999999999999986532111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
......+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 84 --~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 160 (263)
T 3moy_A 84 --ARERNLLSGW-DSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAK 160 (263)
T ss_dssp --HHHTTTTHHH-HHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHH
T ss_pred --HHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHH
Confidence 1122234556 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|++||++++|+||+++||||+|+|++++.+++.++|++++..+|.++
T Consensus 161 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------ 210 (263)
T 3moy_A 161 AMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAG------------------------------ 210 (263)
T ss_dssp HHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHH------------------------------
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999887543
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus 211 ------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~ 261 (263)
T 3moy_A 211 ------RAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFT 261 (263)
T ss_dssp ------HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred ------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence 356888999889999999999999999999999999999999999998864
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=429.32 Aligned_cols=254 Identities=30% Similarity=0.487 Sum_probs=229.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|+.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 22 m~~~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-- 98 (278)
T 3h81_A 22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFAD-- 98 (278)
T ss_dssp -CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHH--
T ss_pred CCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhh--
Confidence 7788999999 7899999999995 69999999999999999999999999999999999999999999986532111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
......... + .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 99 ~~~~~~~~~-~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A 176 (278)
T 3h81_A 99 AFTADFFAT-W-GKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA 176 (278)
T ss_dssp HHHHTTTGG-G-HHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHH-H-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHH
Confidence 001111222 4 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|+|++++++++.++|++++..+|.++
T Consensus 177 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~------------------------------- 225 (278)
T 3h81_A 177 MDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAA------------------------------- 225 (278)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH-------------------------------
T ss_pred HHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999887543
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus 226 -----~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~ 276 (278)
T 3h81_A 226 -----RMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFT 276 (278)
T ss_dssp -----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred -----HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 356888999989999999999999999999999999999999999998864
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-50 Score=426.85 Aligned_cols=282 Identities=33% Similarity=0.529 Sum_probs=261.2
Q ss_pred CCCCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHH-----HHHHHhhcccc
Q 004726 304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-----KANNALKMLKG 378 (733)
Q Consensus 304 ~~~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~-----~~~~~~~~i~~ 378 (733)
|..+|+||+|||+|.||.+||..|+++|++|++||+++++++++.+.+.+.++.++++|.++.. +......++..
T Consensus 11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~ 90 (302)
T 1f0y_A 11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT 90 (302)
T ss_dssp -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence 4556789999999999999999999999999999999999999988888888888999887654 44455567888
Q ss_pred ccCcc-ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE
Q 004726 379 VLDYS-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE 457 (733)
Q Consensus 379 ~~~~~-~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve 457 (733)
+++++ ++++||+||+|||++.++++.+++++.+.+++++||+|++|+++++++++.+.++.+++++||++|++.++++|
T Consensus 91 ~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~ 170 (302)
T 1f0y_A 91 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVE 170 (302)
T ss_dssp ESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEE
T ss_pred ecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEE
Confidence 88885 89999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHH
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLL 535 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p~Gpf~~~ 535 (733)
+++++.+++++++.+.++++.+|+.++++++.|||++||++.++++|+++++++| +++++||.++ .++|||+|||+++
T Consensus 171 i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~~ 250 (302)
T 1f0y_A 171 VIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL 250 (302)
T ss_dssp EECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 5999999999 7999999999999
Q ss_pred HhhchHHHHHHHHHHHHhC-CCC-CCCcHHHHHHHHcCCCCcccCccccccC
Q 004726 536 DLAGYGVAAATSKEFDKAF-PDR-SFQSPLVDLLLKSGRNGKANGKGLYTYE 585 (733)
Q Consensus 536 D~~Gld~~~~~~~~l~~~~-~~~-~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 585 (733)
|.+|+|+++++++.+++.+ +++ +.|++++++|+++|++|+|||+|||+|+
T Consensus 251 D~~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~ 302 (302)
T 1f0y_A 251 DYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302 (302)
T ss_dssp HHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred HHHHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence 9999999999999999988 775 4589999999999999999999999994
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-51 Score=421.97 Aligned_cols=254 Identities=22% Similarity=0.345 Sum_probs=218.5
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhh---hccC
Q 004726 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ---KVHG 75 (733)
Q Consensus 1 m~-~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~---~~~~ 75 (733)
|| ++.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++. ....
T Consensus 1 Ms~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T 3fdu_A 1 MSLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPN 79 (266)
T ss_dssp -CCCTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCC
T ss_pred CCCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccc
Confidence 65 67899999 8999999999995 89999999999999999999999999999999999999999999987 3222
Q ss_pred CCcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
.. ........+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 80 ~~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 156 (266)
T 3fdu_A 80 AG--PAGQVPPFVLL-KSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAG 156 (266)
T ss_dssp CS--CGGGSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHC
T ss_pred hh--hHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhC
Confidence 11 12233455666 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (733)
..+|++|++||++++|+||+++||||+|+| ++++++.++|++++..||.+++
T Consensus 157 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a~~-------------------------- 208 (266)
T 3fdu_A 157 YHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASLK-------------------------- 208 (266)
T ss_dssp HHHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCHHHHH--------------------------
T ss_pred HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999998 8999999999999998875443
Q ss_pred HhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 236 ~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|++++... .+++++++.|...+..++.|+|++|++++|++||+|.+.+.
T Consensus 209 ----------~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~~ 259 (266)
T 3fdu_A 209 ----------QTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQE 259 (266)
T ss_dssp ----------HHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC----------
T ss_pred ----------HHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 4456666554 46789999999999999999999999999999999998664
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=425.40 Aligned_cols=256 Identities=24% Similarity=0.333 Sum_probs=228.0
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~-~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+ |+.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|+.||+|+|++++........
T Consensus 5 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 83 (265)
T 3swx_A 5 MSDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA 83 (265)
T ss_dssp --CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--C
T ss_pred CCCCceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchh
Confidence 55 67899999 8999999999995 799999999999999999999999999999999999999999999865432211
Q ss_pred ccccchhHHHHHHHHH-hcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 79 VSLMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i-~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
..+.....+.+ .++ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 84 -~~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 161 (265)
T 3swx_A 84 -SLTPEGGINPW-QVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWG 161 (265)
T ss_dssp -CCCCTTCCCTT-CCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHH
T ss_pred -HHHHHHHHHHH-HHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHH
Confidence 11222222334 457 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
+|++|++||++++|+||+++||||+|+|++++++++.++|++++..+|.+++
T Consensus 162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------- 213 (265)
T 3swx_A 162 NAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQ---------------------------- 213 (265)
T ss_dssp HHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred HHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus 214 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3swx_A 214 --------ATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEFV 263 (265)
T ss_dssp --------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCCC
T ss_pred --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 56778888888899999999999999999999999999999999998764
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-51 Score=418.53 Aligned_cols=248 Identities=23% Similarity=0.317 Sum_probs=226.1
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++... .
T Consensus 5 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-------~ 76 (255)
T 3p5m_A 5 MNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTA-------G 76 (255)
T ss_dssp BTTEEEEE-ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHH-------H
T ss_pred CceEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcch-------H
Confidence 34689998 8899999999995 6999999999999999999999999999999999999999999987631 2
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 77 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ 155 (255)
T 3p5m_A 77 AADAANRVV-RAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSR 155 (255)
T ss_dssp HHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence 333445666 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|++||++++|+||+++||||+|+|++++++++.++|++++..+|.+++
T Consensus 156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 203 (255)
T 3p5m_A 156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFG-------------------------------- 203 (255)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999998875433
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus 204 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 253 (255)
T 3p5m_A 204 ----WTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNFR 253 (255)
T ss_dssp ----HHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 56788888888899999999999999999999999999999999998764
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-51 Score=424.98 Aligned_cols=258 Identities=21% Similarity=0.301 Sum_probs=229.6
Q ss_pred CCCCcEEEEEec--CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC
Q 004726 1 MAAPRVTMEVGN--DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~~v~~~~~~--~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (733)
|+++ |.++. + ++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 22 m~~~-v~~~~-~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~ 99 (286)
T 3myb_A 22 MSEP-LLLQD-RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSRE 99 (286)
T ss_dssp --CC-SEEEE-ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHH
T ss_pred Ccee-EEEEE-ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHH
Confidence 6665 88888 6 899999999995 69999999999999999999999999999999999999999999987521111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
....+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|..
T Consensus 100 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~ 177 (286)
T 3myb_A 100 YYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRK 177 (286)
T ss_dssp HHHHHHHHHHHHH-HHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHH
Confidence 1122233345666 67999999999999999999999999999999999999999999999999 788899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
+|++|++||++++|+||+++||||+|||++++.+++.++|++++..+|.+++
T Consensus 178 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------- 229 (286)
T 3myb_A 178 AAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVA---------------------------- 229 (286)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875432
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNV 298 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~ 298 (733)
.+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++....
T Consensus 230 --------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g~~ 282 (286)
T 3myb_A 230 --------MGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHTPQ 282 (286)
T ss_dssp --------HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCCCC
T ss_pred --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCCCC
Confidence 56788888888999999999999999999999999999999999999876543
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-51 Score=424.37 Aligned_cols=256 Identities=21% Similarity=0.305 Sum_probs=223.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcc-cCCCCchhhhh--c-cC
Q 004726 1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQK--V-HG 75 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F-~aG~Dl~~~~~--~-~~ 75 (733)
|||+.|.++. +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|+.| |+|+|++++.. . ..
T Consensus 1 Ms~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~ 79 (263)
T 3lke_A 1 MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQS 79 (263)
T ss_dssp --CCSEEEEE-CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSS
T ss_pred CCCcEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCC
Confidence 9999999999 899999999999 68999999999999999999999999999999999999 99999999876 2 11
Q ss_pred CCcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
......+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG 158 (263)
T 3lke_A 80 DVRLREVLHVLNHCV-LEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIG 158 (263)
T ss_dssp SHHHHHHHHHHHHHH-HHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhC
Confidence 111222333345666 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcC-cchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (733)
..+|++|++||++++|+||+++||||+|+| ++++.+++.++|++++..||.+++
T Consensus 159 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~------------------------- 213 (263)
T 3lke_A 159 YEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIA------------------------- 213 (263)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 999999999999999999999999999999 999999999999999998875433
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.....+++++++.|.+.+..++.|+|++|++++|++++++.+
T Consensus 214 -----------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~~ 262 (263)
T 3lke_A 214 -----------ATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHH 262 (263)
T ss_dssp -----------HHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC--------
T ss_pred -----------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCCC
Confidence 5677888887788999999999999999999999999999999998764
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=422.81 Aligned_cols=256 Identities=25% Similarity=0.358 Sum_probs=231.7
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc--
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV-- 79 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~-- 79 (733)
|+.|.++. +++|++||||||+ .|+||.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++.........
T Consensus 16 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 94 (279)
T 3g64_A 16 WRHLRVEI-TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTAR 94 (279)
T ss_dssp CSSEEEEE-ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHH
T ss_pred CCeEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhH
Confidence 56799999 7899999999995 7999999999999999999999999999999999999999999998764332211
Q ss_pred -cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCC-CChhhhhhhccccCHH
Q 004726 80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVI-PGFGGTQRLPRLVGLS 157 (733)
Q Consensus 80 -~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-P~~g~~~~l~r~~G~~ 157 (733)
..+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|+|++|..
T Consensus 95 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~ 173 (279)
T 3g64_A 95 LLDFNRMTGQVV-RAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG 173 (279)
T ss_dssp HHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence 11222344556 67999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
+|++|++||++++|+||+++||||+|+|++++.+++.++|++|+..++.+++
T Consensus 174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 225 (279)
T 3g64_A 174 HATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALAHA---------------------------- 225 (279)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred HHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++..
T Consensus 226 --------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g 276 (279)
T 3g64_A 226 --------QTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQG 276 (279)
T ss_dssp --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCC
T ss_pred --------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence 567888888889999999999999999999999999999999999988654
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=423.98 Aligned_cols=255 Identities=24% Similarity=0.347 Sum_probs=224.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc----
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---- 78 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---- 78 (733)
..+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|+.||+|+|++++........
T Consensus 24 ~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~ 102 (290)
T 3sll_A 24 FVLVDRP-RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQP 102 (290)
T ss_dssp CEEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred eEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccch
Confidence 4577888 8999999999995 899999999999999999999999999999999999999999999865432211
Q ss_pred --ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCC-hhhhhhhccccC
Q 004726 79 --VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVG 155 (733)
Q Consensus 79 --~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~-~g~~~~l~r~~G 155 (733)
...+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|+|++|
T Consensus 103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG 181 (290)
T 3sll_A 103 TIALRSMELLDEVI-LTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIG 181 (290)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhC
Confidence 111223344556 6799999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (733)
..+|++|++||++++|+||+++||||+|||++++++++.++|++|+..||.+++
T Consensus 182 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------- 235 (290)
T 3sll_A 182 TSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIE-------------------------- 235 (290)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHH--------------------------
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999998875433
Q ss_pred HhCCCchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHhhhhhcCCC
Q 004726 236 KTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELV-MLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 236 ~~~~~~~a~~~~~~~i~~~~~-~~~~~~l~~E~~~~~~~~-~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.... .+++++++.|...+..++ .|+|++|++++|++||+|++.+
T Consensus 236 ----------~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~g 288 (290)
T 3sll_A 236 ----------LTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRD 288 (290)
T ss_dssp ----------HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCCS
T ss_pred ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 56788888888 899999999999999999 9999999999999999988654
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-51 Score=421.52 Aligned_cols=251 Identities=24% Similarity=0.297 Sum_probs=189.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
+..|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus 5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 83 (256)
T 3qmj_A 5 MVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSE 83 (256)
T ss_dssp -CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCC
T ss_pred cceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHH
Confidence 45788998 8899999999995 699999999999999999999999999999999999999999999865432222223
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
.....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 84 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ 162 (256)
T 3qmj_A 84 GKFGFRGLI-KALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAW 162 (256)
T ss_dssp CSSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 344456677 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|++||++++|+||+++||||+|+|++++.+++.++|++++..+|.+++
T Consensus 163 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 210 (256)
T 3qmj_A 163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSLM-------------------------------- 210 (256)
T ss_dssp HHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999998875433
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 004726 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~ 291 (733)
.+|++++.....+++++++.|...+..++.|+|++|++++|++||+
T Consensus 211 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~ 256 (256)
T 3qmj_A 211 ----AVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR 256 (256)
T ss_dssp ----HHHHHHHCC-------------------------------------
T ss_pred ----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence 5678888888888999999999999999999999999999999985
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-51 Score=422.20 Aligned_cols=258 Identities=24% Similarity=0.317 Sum_probs=229.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC---C
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---A 76 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (733)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 78 (269)
T 1nzy_A 1 MY-EAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGV 78 (269)
T ss_dssp CC-SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHH
T ss_pred CC-ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccCh
Confidence 66 5688998 7899999999995 899999999999999999999999999999999999999999998754210 0
Q ss_pred Ccc-cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 77 GDV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 77 ~~~-~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
... ..+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 157 (269)
T 1nzy_A 79 RDHFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVG 157 (269)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhh
Confidence 000 11222244556 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (733)
..+|++|++||++++|+||+++||||+|+|++++.+++.++|++++..+|.+++
T Consensus 158 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 211 (269)
T 1nzy_A 158 MRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV-------------------------- 211 (269)
T ss_dssp HHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHH--------------------------
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999998865332
Q ss_pred HhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 236 ~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.+.
T Consensus 212 ----------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~~~ 263 (269)
T 1nzy_A 212 ----------MAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV 263 (269)
T ss_dssp ----------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred ----------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence 4577888888889999999999999999999999999999999999987553
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=417.77 Aligned_cols=253 Identities=26% Similarity=0.376 Sum_probs=221.3
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~-~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+ ++.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++ ... . ..
T Consensus 5 m~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~--~-~~ 79 (265)
T 3rsi_A 5 MSAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW--M-VR 79 (265)
T ss_dssp ----CCEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-------------
T ss_pred CCCCCcEEEEE-ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc--c-cc
Confidence 54 67899999 7899999999995 79999999999999999999999999999999999999999998 321 1 11
Q ss_pred ccccchhHHH-HHHHHH-h--cCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhcccc
Q 004726 79 VSLMPDVSVE-LVVNLI-E--DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154 (733)
Q Consensus 79 ~~~~~~~~~~-~~~~~i-~--~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~ 154 (733)
...+...... ++ ..+ . ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v 158 (265)
T 3rsi_A 80 DGSAPPLDPATIG-KGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQI 158 (265)
T ss_dssp -----CCCHHHHH-HHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHS
T ss_pred hHHHHHHhHHHHH-HHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHh
Confidence 1122223345 56 668 8 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004726 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (733)
Q Consensus 155 G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (733)
|..+|++|++||++++|+||+++||||+|+|++++.+++.++|++++..+|.+++
T Consensus 159 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------- 213 (265)
T 3rsi_A 159 PYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVR------------------------- 213 (265)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred CHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999998875433
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus 214 -----------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3rsi_A 214 -----------NAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREARFT 263 (265)
T ss_dssp -----------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCCC
T ss_pred -----------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 56788888888899999999999999999999999999999999998764
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-51 Score=423.33 Aligned_cols=254 Identities=23% Similarity=0.322 Sum_probs=228.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 6 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~- 83 (265)
T 3qxz_A 6 VTELHEEI-RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNP- 83 (265)
T ss_dssp CCEEEEEE-ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSS-
T ss_pred cceEEEEE-ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHH-
Confidence 46788998 7899999999995 69999999999999999999999999999999999999999999986643222111
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
.... +.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus 84 ~~~~-~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ 161 (265)
T 3qxz_A 84 DFSA-SPVQ-PAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAE 161 (265)
T ss_dssp CCCS-CCSS-SCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHH
T ss_pred HHHH-HHHH-HHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence 1112 3445 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
|++||++++|+||+++||||+|+|++++++++.++|++++.. ||.+++
T Consensus 162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~------------------------------- 210 (265)
T 3qxz_A 162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAA------------------------------- 210 (265)
T ss_dssp HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHH-------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHHH-------------------------------
Confidence 999999999999999999999999999999999999999998 775433
Q ss_pred chHHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSG--VLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~--l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.....+++++ ++.|.+.+..++.|+|++|++++|++||+|++..
T Consensus 211 -----~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~g 263 (265)
T 3qxz_A 211 -----LTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWAG 263 (265)
T ss_dssp -----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCCC
T ss_pred -----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCCC
Confidence 56777888777788888 9999999999999999999999999999998644
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-50 Score=416.63 Aligned_cols=253 Identities=25% Similarity=0.384 Sum_probs=228.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++.+.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+||||| .|++||+|+|++++.. .. .....
T Consensus 8 ~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~~-~~~~~ 84 (265)
T 2ppy_A 8 KQYLTVFK-EDGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-AD-PRFKT 84 (265)
T ss_dssp CSSEEEEE-ETTEEEEEECSSTTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-SC-HHHHH
T ss_pred CCeEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-cc-hhHHH
Confidence 45788998 789999999999779999999999999999999999999999999 9999999999998864 11 11111
Q ss_pred cchhH-HHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCc-eEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 82 MPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 82 ~~~~~-~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a-~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
+.... ++++ .+|.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|++++|..+|
T Consensus 85 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 163 (265)
T 2ppy_A 85 QFCLFCNETL-DKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRA 163 (265)
T ss_dssp HHHHHHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHH
Confidence 22234 5666 67999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|+|++++++++.+++++++..+|.++
T Consensus 164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------- 212 (265)
T 2ppy_A 164 LDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATYAV------------------------------- 212 (265)
T ss_dssp HHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH-------------------------------
T ss_pred HHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999876533
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus 213 -----~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~ 263 (265)
T 2ppy_A 213 -----SNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNWK 263 (265)
T ss_dssp -----HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred -----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 356788888888899999999999999999999999999999999988753
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=416.17 Aligned_cols=251 Identities=26% Similarity=0.368 Sum_probs=222.7
Q ss_pred CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+.+.++. +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...... ..+
T Consensus 3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~~ 78 (257)
T 2ej5_A 3 ETIRYEV-KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDH---GDV 78 (257)
T ss_dssp SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CH---HHH
T ss_pred CceEEEe-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccch---hHH
Confidence 6788998 789999999999 58999999999999999999999999999999999999999999987542211 111
Q ss_pred ch-hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 83 PD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 83 ~~-~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
.. ..++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus 79 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T 2ej5_A 79 LRSRYAPMM-KALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE 157 (257)
T ss_dssp HHHTHHHHH-HHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence 11 244556 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|++||++++|+||+++||||+|+|++++.+++.+++++++..+|.++
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~--------------------------------- 204 (257)
T 2ej5_A 158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAI--------------------------------- 204 (257)
T ss_dssp HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHH---------------------------------
T ss_pred HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999886433
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus 205 ---~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 255 (257)
T 2ej5_A 205 ---GLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQ 255 (257)
T ss_dssp ---HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCCC
T ss_pred ---HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCCC
Confidence 256778888888899999999999999999999999999999999988753
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=415.55 Aligned_cols=254 Identities=30% Similarity=0.458 Sum_probs=226.6
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~-~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+ +..+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-- 77 (258)
T 2pbp_A 1 MSEFVSIAARQ-EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPI-- 77 (258)
T ss_dssp ---CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHH--
T ss_pred CCCcceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccch--
Confidence 55 56788888 7899999999995 7999999999999999999999999999999999999999999987542210
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+.... +++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 78 ~~~~~~~~-~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 155 (258)
T 2pbp_A 78 RLEWLNQF-ADW-DRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKR 155 (258)
T ss_dssp HHHHHCTT-HHH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred hHHHHHHH-HHH-HHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHH
Confidence 11111122 455 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|++||++++|+||+++||||+|+|++++++++.++|++++..+|.++
T Consensus 156 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------ 205 (258)
T 2pbp_A 156 ALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLAL------------------------------ 205 (258)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH------------------------------
T ss_pred HHHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886543
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus 206 ------~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 256 (258)
T 2pbp_A 206 ------RLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRFQ 256 (258)
T ss_dssp ------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred ------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCC
Confidence 256778888888899999999999999999999999999999999988753
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=421.25 Aligned_cols=253 Identities=21% Similarity=0.287 Sum_probs=221.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC-----C-
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-----A- 76 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-----~- 76 (733)
+.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 11 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 89 (274)
T 3tlf_A 11 DTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPY 89 (274)
T ss_dssp SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CT
T ss_pred CceEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccch
Confidence 5799999 7899999999995 799999999999999999999999999999999999999999999865432 0
Q ss_pred CcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
..........++++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+|++|.
T Consensus 90 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~ 167 (274)
T 3tlf_A 90 LSTYDQWEAPQEGT-PPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPR 167 (274)
T ss_dssp TCSGGGGSCCCTTC-CCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCH
T ss_pred hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCH
Confidence 00111111223444 568999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHcCC--CCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSK--SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (733)
Q Consensus 157 ~~a~~l~ltG~--~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (733)
.+|++|++||+ +++|+||+++||||+|+|++++++++.++|++++..+|.++
T Consensus 168 ~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------- 221 (274)
T 3tlf_A 168 SIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAV-------------------------- 221 (274)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH--------------------------
T ss_pred HHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHH--------------------------
Confidence 99999999999 99999999999999999999999999999999999887543
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus 222 ----------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 272 (274)
T 3tlf_A 222 ----------RGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQ 272 (274)
T ss_dssp ----------HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred ----------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 356788888888999999999999999999999999999999999998764
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=422.24 Aligned_cols=251 Identities=25% Similarity=0.330 Sum_probs=222.7
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccC----CC
Q 004726 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG----AG 77 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~----~~ 77 (733)
|+.|.++. +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 8 ~~~i~~~~-~~~va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 86 (287)
T 3gkb_A 8 YSTLRVSS-EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAA 86 (287)
T ss_dssp CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHH
T ss_pred CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhH
Confidence 78899999 88999999999999999999999999999999999999999999998 79999999998864210 00
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeC-CceEeCccccCCCCCChhhhhhhccccCH
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
.........++++ .+|.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|+|++|.
T Consensus 87 ~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~ 165 (287)
T 3gkb_A 87 SAPADVNVFQAVG-ELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGR 165 (287)
T ss_dssp TSCTTCCTTHHHH-HHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCH
Confidence 1112233345666 679999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++|++||++++|+||+++||||+|||++++++++.++|++|+..+|.+++
T Consensus 166 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~--------------------------- 218 (287)
T 3gkb_A 166 NRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDGVIE--------------------------- 218 (287)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHH---------------------------
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875443
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh--hcC
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA--TSK 294 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~--~~~ 294 (733)
.+|++++.. ...++++.|...+..++.|+|++|++++|++||+ |.+
T Consensus 219 ---------~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~~~P~f 266 (287)
T 3gkb_A 219 ---------AAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGAQTPAG 266 (287)
T ss_dssp ---------HHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTTTSHHH
T ss_pred ---------HHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCch
Confidence 345566553 3468899999999999999999999999999987 554
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=416.03 Aligned_cols=254 Identities=22% Similarity=0.279 Sum_probs=227.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CC-CcccCCCCchhhhhccCCC
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NG-GRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g-~g-~~F~aG~Dl~~~~~~~~~~ 77 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+ +|+||||| .| ++||+|+|++++.......
T Consensus 1 m~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~ 78 (261)
T 1ef8_A 1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP 78 (261)
T ss_dssp CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT
T ss_pred CCcceEEEEE-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh
Confidence 8999999999 7899999999995 89999999999999999999999 99999999 98 9999999999876432111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
. ......++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 79 -~-~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 155 (261)
T 1ef8_A 79 -L-SYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH 155 (261)
T ss_dssp -T-CTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred -H-HHHHHHHHHH-HHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHH
Confidence 1 1222345666 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
+|++|++||++++|+||+++||||+|+|++++.+++.++|++++..+|.++
T Consensus 156 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~----------------------------- 206 (261)
T 1ef8_A 156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAI----------------------------- 206 (261)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHH-----------------------------
T ss_pred HHHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999876433
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFK--ELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~--~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+. .++.|+|++|++++|++||+|.+.
T Consensus 207 -------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 259 (261)
T 1ef8_A 207 -------AVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV 259 (261)
T ss_dssp -------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred -------HHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCCC
Confidence 245677887777888899999999999 999999999999999999988753
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=413.95 Aligned_cols=250 Identities=28% Similarity=0.435 Sum_probs=225.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+ +.|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 5 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 82 (256)
T 3trr_A 5 MA-DEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSE 82 (256)
T ss_dssp CC-CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEET
T ss_pred CC-CceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhh
Confidence 44 5688998 7999999999995 7999999999999999999999999999999999999999999998753221111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
. . . . + ..+ ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 83 ~---~-~-~-~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 154 (256)
T 3trr_A 83 R---G-L-G-F-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA 154 (256)
T ss_dssp T---E-E-T-T-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred h---h-h-h-H-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence 1 1 1 1 2 235 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|||++++.+++.++|++++..+|.+++
T Consensus 155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (256)
T 3trr_A 155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVA------------------------------ 204 (256)
T ss_dssp HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.+
T Consensus 205 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g 255 (256)
T 3trr_A 205 ------ATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQG 255 (256)
T ss_dssp ------HHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCC
T ss_pred ------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCC
Confidence 567889999999999999999999999999999999999999999988643
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-50 Score=429.14 Aligned_cols=292 Identities=19% Similarity=0.265 Sum_probs=231.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCC--c
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG--D 78 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~--~ 78 (733)
+++|.+++ +++|++||||||+ .|+||.+|+++|.++++.+++|+++|+|||||+| ++||+|+|++++....... .
T Consensus 8 ~e~vl~e~-~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 86 (353)
T 4hdt_A 8 NEDVLVNV-EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAE 86 (353)
T ss_dssp CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHH
T ss_pred CCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHH
Confidence 57899999 8999999999995 7999999999999999999999999999999998 6999999999986532221 1
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus 87 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~ 164 (353)
T 4hdt_A 87 ARRFWFDEYRLN-AHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KL 164 (353)
T ss_dssp HHHHHHHHHHHH-HHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-TH
T ss_pred HHHHHHHHHHHH-HHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-HH
Confidence 122223344555 6799999999999999999999999999999999999999999999999999999999999999 69
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhh---------hh----hhccCCCCCcHHHHH
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI---------RS----LHRTDKLGSLSEARE 225 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~---------~~----~~~~~~~~~~~~~~~ 225 (733)
|++|++||++++|+||+++||||+|||+++|++.+.+++.+......... .. +.+.-....+.....
T Consensus 165 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~ 244 (353)
T 4hdt_A 165 GLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIA 244 (353)
T ss_dssp HHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999999999999999999998876432110000 00 000000011111111
Q ss_pred HHH-----HHHHHH-HHhCCCchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--hhhhhcCCC
Q 004726 226 VLK-----LARLQA-KKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELVMLDTSRGLVHVFF--AQRATSKVP 296 (733)
Q Consensus 226 ~~~-----~~~~~~-~~~~~~~~a~~~~~~~i~~~~~~-~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~--~kr~~~~~~ 296 (733)
.++ ...... +...+...+...+|+.++++... +++++++.|.+.+..++.|+|++||++||+ +||+|++++
T Consensus 245 ~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~p 324 (353)
T 4hdt_A 245 ALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRP 324 (353)
T ss_dssp HHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCSS
T ss_pred HHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCCC
Confidence 111 111122 23445555788889999998875 799999999999999999999999999999 999999876
Q ss_pred C
Q 004726 297 N 297 (733)
Q Consensus 297 ~ 297 (733)
.
T Consensus 325 ~ 325 (353)
T 4hdt_A 325 A 325 (353)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-51 Score=429.00 Aligned_cols=257 Identities=25% Similarity=0.329 Sum_probs=183.3
Q ss_pred CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhh---ccCCC
Q 004726 3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK---VHGAG 77 (733)
Q Consensus 3 ~~~v~~~~~~~-~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~---~~~~~ 77 (733)
|+.|.++. ++ +|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.. .....
T Consensus 28 ~~~v~~~~-~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~ 106 (298)
T 3qre_A 28 QDAVLYEA-TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM 106 (298)
T ss_dssp CCSEEEEE-CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred CCeEEEEE-eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 47799999 77 99999999995 799999999999999999999999999999999999999999998864 11110
Q ss_pred ----cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccc
Q 004726 78 ----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (733)
Q Consensus 78 ----~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~ 153 (733)
....+......++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 185 (298)
T 3qre_A 107 AKAKDANLADLVGERPP-HFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRL 185 (298)
T ss_dssp --------------CCT-TGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHh
Confidence 1111111222334 56889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004726 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (733)
Q Consensus 154 ~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (733)
+|..+|++|++||++++|+||+++||||+|+|++++++++.++|++|+.. +|.++
T Consensus 186 vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~------------------------ 241 (298)
T 3qre_A 186 TSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSM------------------------ 241 (298)
T ss_dssp SCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHH------------------------
T ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998 76543
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
..+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++.+.
T Consensus 242 ------------~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~~~ 294 (298)
T 3qre_A 242 ------------AVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFPSL 294 (298)
T ss_dssp ------------HHHHHHHHGGGGC----------------------------------------
T ss_pred ------------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 35678899988899999999999999999999999999999999999987653
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-50 Score=417.98 Aligned_cols=253 Identities=21% Similarity=0.339 Sum_probs=225.1
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
...+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|+.||+|+|++++...........
T Consensus 32 ~~~v~~~~-~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 110 (287)
T 2vx2_A 32 PRPTSARQ-LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAE 110 (287)
T ss_dssp CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHH
T ss_pred CcceEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHH
Confidence 35688998 7899999999995 799999999999999999999999999999999999999999998754321111111
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |++++|..+|++
T Consensus 111 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~ 188 (287)
T 2vx2_A 111 VFQTCSKVM-MHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALE 188 (287)
T ss_dssp HHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHH
Confidence 222344556 679999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|++||++++|+||+++||||+|||++++.+++.++|++++..+|.+++
T Consensus 189 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------------- 236 (287)
T 2vx2_A 189 MLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVS-------------------------------- 236 (287)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999998865332
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus 237 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f 285 (287)
T 2vx2_A 237 ----LGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVW 285 (287)
T ss_dssp ----HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 4567888888889999999999999999999999999999999998875
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-50 Score=416.71 Aligned_cols=253 Identities=27% Similarity=0.413 Sum_probs=224.0
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
++.|.++. +++|++|||||| +.|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.........
T Consensus 8 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~- 85 (267)
T 3r9t_A 8 APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHP- 85 (267)
T ss_dssp CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCT-
T ss_pred CCcEEEEE-ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhH-
Confidence 46799999 889999999999 57999999999999999999999999999999999 599999999998754322211
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.........+ . ..++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 86 ~~~~~~~~~~-~-~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ 163 (267)
T 3r9t_A 86 DHPEWGFAGY-V-RHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAM 163 (267)
T ss_dssp TCGGGCGGGT-T-TCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHH
T ss_pred HHHhHHHHHH-H-HHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHH
Confidence 1111110122 1 3489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|++||++++|+||+++||||+|+|++++++++.++|+++++.+|.+++
T Consensus 164 ~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------- 212 (267)
T 3r9t_A 164 RLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQ------------------------------- 212 (267)
T ss_dssp HHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred HHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875433
Q ss_pred chHHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 241 MPQHQACLDV---IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 241 ~~a~~~~~~~---i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++ ++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus 213 -----~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~ 265 (267)
T 3r9t_A 213 -----ASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQ 265 (267)
T ss_dssp -----HHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCCC
T ss_pred -----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 45677 777778889999999999999999999999999999999998764
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-50 Score=419.18 Aligned_cols=254 Identities=25% Similarity=0.347 Sum_probs=215.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++.|.++. +++|++||||||+ .|+||.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++...........
T Consensus 19 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 97 (278)
T 4f47_A 19 GPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKD 97 (278)
T ss_dssp CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC-------------------
T ss_pred CCceEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHH
Confidence 35688998 8899999999995 799999999999999999999999999999999999999999999865432211111
Q ss_pred cchhHHHHHHHHHh---cCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 82 MPDVSVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 82 ~~~~~~~~~~~~i~---~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
....+.++ +.+. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 98 -~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 175 (278)
T 4f47_A 98 -GSYDPSRI-DALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTV 175 (278)
T ss_dssp ----CTTCB-TTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHH
T ss_pred -HHHHHHHH-HHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHH
Confidence 00111223 3455 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|++||++++|+||+++||||+|+|++++++++.++|++++..++.++
T Consensus 176 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------ 225 (278)
T 4f47_A 176 ACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAV------------------------------ 225 (278)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH------------------------------
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999887543
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus 226 ------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f~ 276 (278)
T 4f47_A 226 ------QAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQ 276 (278)
T ss_dssp ------HHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCCC
T ss_pred ------HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 356788999988999999999999999999999999999999999998864
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=413.91 Aligned_cols=257 Identities=20% Similarity=0.311 Sum_probs=227.6
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC---
Q 004726 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--- 77 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~--- 77 (733)
+|++|.++.++++|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~ 80 (275)
T 1dci_A 1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD 80 (275)
T ss_dssp CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred CCceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccc
Confidence 36788998755789999999995 89999999999999999999999999999999999999999999886431110
Q ss_pred c-------ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhh
Q 004726 78 D-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRL 150 (733)
Q Consensus 78 ~-------~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l 150 (733)
. ...+....++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l 159 (275)
T 1dci_A 81 DVARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL 159 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred hhhhhhHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHH
Confidence 0 001112234455 56899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCH-HHHHHHHHcCCCCCHHHHHHcCCccEEcCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHH
Q 004726 151 PRLVGL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228 (733)
Q Consensus 151 ~r~~G~-~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (733)
++++|. .+|++|++||++++|+||+++||||+|+|+ +++++++.++|++++..+|.+++
T Consensus 160 ~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~------------------- 220 (275)
T 1dci_A 160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ------------------- 220 (275)
T ss_dssp GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHH-------------------
T ss_pred HHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHH-------------------
Confidence 999999 999999999999999999999999999999 99999999999999998875433
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh---hhhcCC
Q 004726 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ---RATSKV 295 (733)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~k---r~~~~~ 295 (733)
.+|++++.+...+++++++.|...+..++.|+|++|++++|++| |+|.+.
T Consensus 221 -----------------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f~ 273 (275)
T 1dci_A 221 -----------------GSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFS 273 (275)
T ss_dssp -----------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCCC
T ss_pred -----------------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCCC
Confidence 46778888888899999999999999999999999999999999 888753
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=412.21 Aligned_cols=254 Identities=18% Similarity=0.179 Sum_probs=217.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC-CCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-AGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~ 78 (733)
|+|+.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.| ++|+|||||.|++||+|+|++++..... ...
T Consensus 4 m~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 81 (267)
T 3hp0_A 4 VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRK 81 (267)
T ss_dssp -CCSSEEEEE-ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCC
T ss_pred CCCceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHH
Confidence 7788999999 8999999999995 7999999999999999999986 6999999999999999999999876421 112
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
.........+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++|..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~ 159 (267)
T 3hp0_A 82 QASSQEPLYDLW-MKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQK 159 (267)
T ss_dssp SCCCCHHHHHHH-HHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHH
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHH
Confidence 223344555666 679999999999999999999999999999999999999999999999999885 778999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|++||++++|+||+++||||+|+|+.+ +.+.++++++++.+|.+++
T Consensus 160 A~ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~p~a~~----------------------------- 208 (267)
T 3hp0_A 160 AHYMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLNKKGIA----------------------------- 208 (267)
T ss_dssp HHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSCHHHHH-----------------------------
T ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999998654 3467899999988875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|++++... ...+++++.|.+.+..++.|+|++|++++|++||+|.+.+.
T Consensus 209 -------~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~~ 259 (267)
T 3hp0_A 209 -------HYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWEDQ 259 (267)
T ss_dssp -------HHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC-----
T ss_pred -------HHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCC
Confidence 4566676653 34677888999999999999999999999999999998763
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-50 Score=416.64 Aligned_cols=249 Identities=27% Similarity=0.338 Sum_probs=206.9
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+.|.++. +++|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++....... ...
T Consensus 11 ~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~- 87 (262)
T 3r9q_A 11 PAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNE-LHP- 87 (262)
T ss_dssp CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCC-CCT-
T ss_pred CEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhh-HHH-
Confidence 3588998 7899999999995 79999999999999999999999999999999999999999999986543211 110
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
.....++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|
T Consensus 88 -~~~~~~~-~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l 165 (262)
T 3r9q_A 88 -HGPGPMG-PSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDL 165 (262)
T ss_dssp -TSSCTTS-STTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred -hhhhHHH-HHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 0011222 34678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
++||++++|+||+++||||+|+|++++.+++.++|+++++.+|.+++
T Consensus 166 ~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 212 (262)
T 3r9q_A 166 ILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVR--------------------------------- 212 (262)
T ss_dssp HHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH---------------------------------
T ss_pred HHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....+++++++.|.+ +..++.| |++|++++|++||+|.+.
T Consensus 213 ---~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~~~ 260 (262)
T 3r9q_A 213 ---ADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRHGA 260 (262)
T ss_dssp ---HHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC-------------------
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCCCC
Confidence 56788899999999999999999 9999999 999999999999998763
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-50 Score=414.94 Aligned_cols=253 Identities=23% Similarity=0.241 Sum_probs=224.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhc-c-CCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV-H-GAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~-~-~~~~~~ 80 (733)
|+.+.++.++++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++ +... . ......
T Consensus 9 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~~~~~~ 87 (264)
T 1wz8_A 9 YPGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMRASHEALL 87 (264)
T ss_dssp CTTEEEEEEETTEEEEEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHHHCHHHHH
T ss_pred CCeEEEEEccCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccccchHHHH
Confidence 567888874578999999999999999999999999999999999999999999999999999999 7542 1 100011
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 166 (264)
T 1wz8_A 88 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK 166 (264)
T ss_dssp HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence 1223344566 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|++||++++|+||+++||||+|+|++++.+++.+++++++..+|.+++
T Consensus 167 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 215 (264)
T 1wz8_A 167 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALH------------------------------- 215 (264)
T ss_dssp HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred HHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998764332
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.+... ++++++.|.+.+..++.|+|++|++++|++||+|.+
T Consensus 216 -----~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f 263 (264)
T 1wz8_A 216 -----HTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF 263 (264)
T ss_dssp -----HHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred -----HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCCC
Confidence 456777777777 899999999999999999999999999999998864
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-50 Score=414.61 Aligned_cols=256 Identities=24% Similarity=0.285 Sum_probs=216.4
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-----CC-CcccCCCCchhhhhcc
Q 004726 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-----NG-GRFSGGFDINVFQKVH 74 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g-----~g-~~F~aG~Dl~~~~~~~ 74 (733)
+|+.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+||||| .| ++||+|+|++++....
T Consensus 8 ~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~ 86 (275)
T 4eml_A 8 HYDDILYYK-AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGG 86 (275)
T ss_dssp ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC------
T ss_pred CCceEEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhccc
Confidence 367899998 8999999999995 79999999999999999999999999999999 88 5999999999886421
Q ss_pred CCCcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhcccc
Q 004726 75 GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154 (733)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~ 154 (733)
..............++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus 87 ~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~v 165 (275)
T 4eml_A 87 YIDDQGTPRLNVLDLQ-RLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIV 165 (275)
T ss_dssp --------CCCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHH
T ss_pred ccchhhHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHh
Confidence 1111111112244566 679999999999999999999999999999999999999999999999999988899999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004726 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (733)
Q Consensus 155 G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (733)
|..+|++|++||++++|+||+++||||+|+|++++++++.++|++|++.||.+++
T Consensus 166 G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------- 220 (275)
T 4eml_A 166 GQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIR------------------------- 220 (275)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred HHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999998875443
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++..... .....+.|.+.+..++.|+|++|++++|++||+|....
T Consensus 221 -----------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~ 270 (275)
T 4eml_A 221 -----------CLKAAFNADCDG-QAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFSQ 270 (275)
T ss_dssp -----------HHHHHHHHTTSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred -----------HHHHHHHhhhcc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 455666665432 33444677788889999999999999999999998644
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=411.50 Aligned_cols=251 Identities=25% Similarity=0.373 Sum_probs=218.4
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
+++.|.+++ +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 13 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~- 90 (265)
T 3qxi_A 13 TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVE- 90 (265)
T ss_dssp --CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEET-
T ss_pred CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhh-
Confidence 467899999 7999999999995 7999999999999999999999999999999999999999999998653221111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.... . + ..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus 91 --~~~~-~-~-~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 164 (265)
T 3qxi_A 91 --GRGL-G-F-TERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAM 164 (265)
T ss_dssp --TTEE-T-T-TTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHH
T ss_pred --hhhh-h-H-HHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHH
Confidence 1111 1 2 23444 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|++||++++|+||+++||||+|||++++++++.++|+++++.+|.+++
T Consensus 165 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------- 213 (265)
T 3qxi_A 165 ELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVA------------------------------- 213 (265)
T ss_dssp HHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred HHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875433
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++.+
T Consensus 214 -----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g 264 (265)
T 3qxi_A 214 -----ATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWTG 264 (265)
T ss_dssp -----HHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCCCC
T ss_pred -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 567888888888999999999999999999999999999999999988643
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=414.79 Aligned_cols=251 Identities=23% Similarity=0.299 Sum_probs=210.2
Q ss_pred CCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 2 AAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
+|+.+.++. +++|++|||||| +.|++|.+|+++|.++++.++.|+++ +|||||.|+.||+|+|++++..... ....
T Consensus 24 ~~~~i~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~ 100 (280)
T 2f6q_A 24 GFETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPP-GGVE 100 (280)
T ss_dssp ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCT-THHH
T ss_pred CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCc-chhh
Confidence 467899998 789999999999 58999999999999999999999999 9999999999999999998754221 1111
Q ss_pred c----cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 81 L----MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 81 ~----~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
. +....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 101 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 179 (280)
T 2f6q_A 101 EKAKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSP 179 (280)
T ss_dssp HHHHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCH
Confidence 1 112234555 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++|++||++++|+||+++||||+|+|++++.+++.++|++++..+|.+++
T Consensus 180 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------- 232 (280)
T 2f6q_A 180 AKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR--------------------------- 232 (280)
T ss_dssp HHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH---------------------------
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999988764332
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhh
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~ 292 (733)
.+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|
T Consensus 233 ---------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p 279 (280)
T 2f6q_A 233 ---------ISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK 279 (280)
T ss_dssp ---------HHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred ---------HHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence 45677777766778899999999999999999999999999999986
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-49 Score=409.84 Aligned_cols=253 Identities=26% Similarity=0.334 Sum_probs=218.6
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+.+.++. +++|++|||||| +.|+||.+|+++|.++++.++.|+++|+|||||.|+ +||+|+|++++..... ....
T Consensus 12 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~-~~~~ 89 (273)
T 2uzf_A 12 YDEIKYEF-YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGY-VGED 89 (273)
T ss_dssp CSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC---------CCS
T ss_pred CceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhcccc-chhh
Confidence 56788998 789999999999 589999999999999999999999999999999998 9999999998754211 1111
Q ss_pred cc-chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 81 LM-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~-~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.+ .....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A 168 (273)
T 2uzf_A 90 QIPRLNVLDLQ-RLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKA 168 (273)
T ss_dssp SSCCCTHHHHH-HHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHH
T ss_pred hHHHhhHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHH
Confidence 11 11134555 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|+|++++.+++.++|+++++.+|.+++
T Consensus 169 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 218 (273)
T 2uzf_A 169 REIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALR------------------------------ 218 (273)
T ss_dssp HHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred HHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998865432
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEA-KVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~-~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++ ...+++++++.|. +.+..++.|+|++|++++|++||+|.+..
T Consensus 219 ------~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~~ 268 (273)
T 2uzf_A 219 ------FLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQ 268 (273)
T ss_dssp ------HHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCSS
T ss_pred ------HHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCCC
Confidence 3455555 2346888999999 99999999999999999999999987643
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-50 Score=416.81 Aligned_cols=253 Identities=22% Similarity=0.264 Sum_probs=216.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC-cccc
Q 004726 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~ 81 (733)
|+.|.++.++++|++||||||+.|+||.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++....... ....
T Consensus 12 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 91 (272)
T 3qk8_A 12 FPSLRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIR 91 (272)
T ss_dssp CTTEEEEECSTTEEEEEECCHHHHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHH
T ss_pred CCeEEEEEeCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHH
Confidence 678999994458999999999999999999999999999999999999999999999999999999986532111 1112
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ 170 (272)
T 3qk8_A 92 IMREARDLV-LNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKY 170 (272)
T ss_dssp HHHHHHHHH-HHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHH
Confidence 223344566 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|++||++++|+||+++||||+|||++++++++.++|++|+..++.+++
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 218 (272)
T 3qk8_A 171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIR-------------------------------- 218 (272)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999876543
Q ss_pred hHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 242 PQHQACLDVIEEGIV---HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~---~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.... .+++..++.| ..++.|+|++|++++|++||+|.+..
T Consensus 219 ----~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f~g 268 (272)
T 3qk8_A 219 ----WTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARFTD 268 (272)
T ss_dssp ----HHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC--
T ss_pred ----HHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence 33444443322 2344445444 47889999999999999999988654
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-50 Score=412.80 Aligned_cols=250 Identities=21% Similarity=0.308 Sum_probs=212.5
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCcccCCCCchhhhhccCCCcccccch
Q 004726 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
+.++. +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||. |++||+|+|++++.... ......+..
T Consensus 7 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~-~~~~~~~~~ 84 (260)
T 1sg4_A 7 VEPDA-GAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRS-PAHYAGYWK 84 (260)
T ss_dssp EEEET-TTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCC-HHHHHHHHH
T ss_pred EEEEe-cCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccC-HHHHHHHHH
Confidence 33444 6889999999998899999999999999999999999999999999 79999999999875321 111112222
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEe--CCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~--~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
..++++ .+|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 85 ~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 163 (260)
T 1sg4_A 85 AVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERA 163 (260)
T ss_dssp HHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHH
Confidence 344556 67999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
++||++++|+||+++||||+|+|++++.+++.++|++++..+|.+++
T Consensus 164 lltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 210 (260)
T 1sg4_A 164 LQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQ--------------------------------- 210 (260)
T ss_dssp HHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------------
T ss_pred HHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998765432
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||++++
T Consensus 211 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~ 259 (260)
T 1sg4_A 211 ---LTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK 259 (260)
T ss_dssp ---HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred ---HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence 4566677666667788899999999999999999999999999999876
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-49 Score=412.75 Aligned_cols=257 Identities=25% Similarity=0.345 Sum_probs=217.0
Q ss_pred CCCCcEEEEEec-CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccCCCCchhhhhccCC-
Q 004726 1 MAAPRVTMEVGN-DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGA- 76 (733)
Q Consensus 1 m~~~~v~~~~~~-~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~- 76 (733)
|++++|.++. + ++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|+ +||+|+|++++......
T Consensus 24 ~~~~~v~~~~-~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~ 102 (289)
T 3t89_A 24 EGFEDIRYEK-STDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYK 102 (289)
T ss_dssp TTCSSEEEEE-ETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC---------
T ss_pred CCCCeEEEEE-ecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccch
Confidence 4578899999 6 899999999995 79999999999999999999999999999999994 99999999988542211
Q ss_pred CcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
............++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|+|++|.
T Consensus 103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~ 181 (289)
T 3t89_A 103 DDSGVHHLNVLDFQ-RQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQ 181 (289)
T ss_dssp -------CTHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCH
T ss_pred hhhHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCH
Confidence 11111122344566 67999999999999999999999999999999999999999999999988888889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++|++||++++|+||+++||||+|+|++++++++.++|++|+..++.+++
T Consensus 182 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~--------------------------- 234 (289)
T 3t89_A 182 KKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR--------------------------- 234 (289)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------
T ss_pred HHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875433
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.... ......+.|.+.+..++.|+|++|++++|++||+|...+
T Consensus 235 ---------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~~ 284 (289)
T 3t89_A 235 ---------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSK 284 (289)
T ss_dssp ---------HHHHHHHHTTS-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCTT
T ss_pred ---------HHHHHHHhhcc-cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence 45666666543 233444578888889999999999999999999998654
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=412.27 Aligned_cols=255 Identities=19% Similarity=0.286 Sum_probs=205.3
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC--CCc-
Q 004726 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--AGD- 78 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~--~~~- 78 (733)
|+.+.++. +++|++|||||| +.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus 8 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 86 (276)
T 2j5i_A 8 WKTVKVEI-EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEIL 86 (276)
T ss_dssp CSSEEEEE-ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTH
T ss_pred CceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHH
Confidence 56788998 789999999999 5899999999999999999999999999999999999999999998753211 110
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+.......+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 166 (276)
T 2j5i_A 87 QEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQ 166 (276)
T ss_dssp HHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHH
Confidence 00111111222124578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|++||++++|+||+++||||+|+|++++.+++.++|++++..+|.+++
T Consensus 167 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------- 217 (276)
T 2j5i_A 167 SLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKNPVVLR----------------------------- 217 (276)
T ss_dssp HHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred HHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--hCCH-HHHHHHHHHHhhh--hhcC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL--VMLD-TSRGLVHVFFAQR--ATSK 294 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~--~~s~-~~~~~i~aF~~kr--~~~~ 294 (733)
.+|++++.+...+++++++.|.+.+..+ +.|+ |++|++++|++|| +|.+
T Consensus 218 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr~r~p~~ 271 (276)
T 2j5i_A 218 -------AAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDKSIKPGL 271 (276)
T ss_dssp -------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcccCCCCc
Confidence 5678888888889999999998887766 6799 9999999999998 5554
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=411.41 Aligned_cols=247 Identities=21% Similarity=0.280 Sum_probs=222.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC-cccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL 81 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~ 81 (733)
+.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus 28 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 106 (276)
T 3rrv_A 28 TEIDVRA-DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAK 106 (276)
T ss_dssp TTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHH
T ss_pred CeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHH
Confidence 4688998 8899999999996 89999999999999999999999999999999999999999999986532111 1112
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus 107 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~e 185 (276)
T 3rrv_A 107 TIRDGREIV-LGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE 185 (276)
T ss_dssp HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence 223344566 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|++||++++|+||+++||||+|+ +++.+++.++|++++..||.+++
T Consensus 186 llltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a~~-------------------------------- 231 (276)
T 3rrv_A 186 YALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQQAVE-------------------------------- 231 (276)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHHHH--------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence 99999999999999999999999 89999999999999998875433
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 004726 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr 290 (733)
.+|++++.....+++++++.|...+..++.|+|++|++++|++||
T Consensus 232 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR 276 (276)
T 3rrv_A 232 ----STKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN 276 (276)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred ----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 456777777777889999999999999999999999999999987
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-49 Score=408.22 Aligned_cols=253 Identities=22% Similarity=0.321 Sum_probs=219.1
Q ss_pred CCCCcEEEE----EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC
Q 004726 1 MAAPRVTME----VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG 75 (733)
Q Consensus 1 m~~~~v~~~----~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~ 75 (733)
|+ +.+.++ . +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.....
T Consensus 5 m~-~~v~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~ 82 (267)
T 3oc7_A 5 MD-ALVDYAGPAAT-GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGS 82 (267)
T ss_dssp CC-SSEEEECHHHH-SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC---------
T ss_pred cc-cccCCCCccce-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccC
Confidence 45 568888 6 7899999999995 799999999999999999999999999999999999999999998862111
Q ss_pred CCcc----cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhc
Q 004726 76 AGDV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP 151 (733)
Q Consensus 76 ~~~~----~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~ 151 (733)
.... ..+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 161 (267)
T 3oc7_A 83 PSSAYDMAVERAREMAALM-RAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP 161 (267)
T ss_dssp --CHHHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT
T ss_pred chhhhhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH
Confidence 1110 01233345566 679999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHH
Q 004726 152 RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231 (733)
Q Consensus 152 r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (733)
++|..+|++|++||++++|+||+++||||+| ++++++++.++|++++..+|.+++
T Consensus 162 -~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a~~---------------------- 216 (267)
T 3oc7_A 162 -KLSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQGLA---------------------- 216 (267)
T ss_dssp -TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHHHH----------------------
T ss_pred -HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHHHH----------------------
Confidence 9999999999999999999999999999999 788999999999999998875433
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 232 LQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 232 ~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus 217 --------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 266 (267)
T 3oc7_A 217 --------------ASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNWT 266 (267)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTTC
T ss_pred --------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 45677777777789999999999999999999999999999999998753
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=415.49 Aligned_cols=256 Identities=21% Similarity=0.288 Sum_probs=217.9
Q ss_pred CCCcEEEEEecCcEEEEEeC-CC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC--
Q 004726 2 AAPRVTMEVGNDGVAIITLI-NP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~-~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (733)
+|+.|.++. +++|++|||| || +.|+||.+|+++|.++++.++.|+. |+|||||.|+.||+|+|++++.......
T Consensus 21 ~~~~v~~~~-~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~ 98 (291)
T 2fbm_A 21 TYRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRN 98 (291)
T ss_dssp CCSSEEEEE-CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHCHH
T ss_pred CcceEEEEE-eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccccch
Confidence 467899998 8899999999 68 5799999999999999999998875 9999999999999999999885421101
Q ss_pred -cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 78 -DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 78 -~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
....+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 99 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~ 177 (291)
T 2fbm_A 99 TASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK 177 (291)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhH
Confidence 0111222344556 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++|++||++++|+||+++||||+|+|++++.+++.++|+++++.+|.+++
T Consensus 178 ~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------- 230 (291)
T 2fbm_A 178 ASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLE--------------------------- 230 (291)
T ss_dssp HHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHHHH---------------------------
T ss_pred HHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875432
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HhhhhhcCCC
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF-FAQRATSKVP 296 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF-~~kr~~~~~~ 296 (733)
.+|++++.....+++++++.|.+.+..++.|+|++|++.+| ++||+|....
T Consensus 231 ---------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~~ 282 (291)
T 2fbm_A 231 ---------ECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPP 282 (291)
T ss_dssp ---------HHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC-----------
T ss_pred ---------HHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence 45777877777778999999999999999999999999999 9999998654
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=409.77 Aligned_cols=254 Identities=20% Similarity=0.267 Sum_probs=223.5
Q ss_pred CCCcEEEEEecCcEEEEEeC-CC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC--
Q 004726 2 AAPRVTMEVGNDGVAIITLI-NP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~-~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (733)
+|+.+.++. +++|++|||| || +.|++|.+|+++|.++++.++.|+ +|+|||||.|++||+|+|++++.......
T Consensus 3 ~~~~i~~~~-~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~ 80 (261)
T 2gtr_A 3 RYRDIVVRK-QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRK 80 (261)
T ss_dssp CCSSEEEEE-ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHH
T ss_pred ccceEEEEE-eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchh
Confidence 366799998 7899999999 68 579999999999999999999887 49999999999999999999875421101
Q ss_pred -cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 78 -DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 78 -~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
....+....++++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 81 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 159 (261)
T 2gtr_A 81 RESTKMAEAIRNFV-NTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGG 159 (261)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCH
Confidence 0111222344556 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++|++||++++|+||+++||||+|+|++++.+++.+++++++..+|.+++
T Consensus 160 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------- 212 (261)
T 2gtr_A 160 ASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLE--------------------------- 212 (261)
T ss_dssp HHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875433
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.....+++++++.|.+.+..++.|+|++|++.+|++||+|.+
T Consensus 213 ---------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f 261 (261)
T 2gtr_A 213 ---------ESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 261 (261)
T ss_dssp ---------HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence 4567777777777899999999999999999999999999999999863
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=410.43 Aligned_cols=247 Identities=25% Similarity=0.321 Sum_probs=192.8
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|+.||+|+|++++........ .
T Consensus 10 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~ 87 (258)
T 3lao_A 10 GPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASG-F 87 (258)
T ss_dssp SSCCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTB-C
T ss_pred CCCeEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhh-H
Confidence 456799999 8899999999995 799999999999999999999999999999999999999999999876432221 1
Q ss_pred ccchhHHHHHHHHH-hcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 81 LMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~~~~~~~~~~i-~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.+.....+.+ .++ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 88 ~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 166 (258)
T 3lao_A 88 RYPDGGVDPW-GVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDA 166 (258)
T ss_dssp CCCTTCCCTT-SCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHH
T ss_pred HHHHHHHHHH-HHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 2222222344 568 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|+|++++++++.++|++++..+|.+++
T Consensus 167 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 216 (258)
T 3lao_A 167 MRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVR------------------------------ 216 (258)
T ss_dssp HHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH------------------------------
T ss_pred HHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~ 287 (733)
.+|++++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus 217 ------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ 258 (258)
T 3lao_A 217 ------AALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV 258 (258)
T ss_dssp ------HHHHHHHHHTC-------------------------------
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence 567888888888999999999999999999999999999995
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=406.82 Aligned_cols=247 Identities=24% Similarity=0.312 Sum_probs=200.4
Q ss_pred EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCcccCCCCchhhhhccCCCcccccc
Q 004726 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMP 83 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (733)
+.++. +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+||||| .|++||+|+|++++...........+.
T Consensus 2 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 80 (250)
T 2a7k_A 2 VFEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI 80 (250)
T ss_dssp EEEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred eEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHH
Confidence 67788 789999999999 589999999999999999999999999999999 999999999999886532111001122
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHH
Q 004726 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (733)
Q Consensus 84 ~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ 163 (733)
...++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..+|++|+
T Consensus 81 ~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~ 158 (250)
T 2a7k_A 81 DRVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEII 158 (250)
T ss_dssp HHHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHH
Confidence 2344556 67999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchH
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (733)
+||++++|+||+++||||+|+|++++++++.+++++++..+|.+++
T Consensus 159 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------- 204 (250)
T 2a7k_A 159 YQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI---------------------------------- 204 (250)
T ss_dssp HHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHH----------------------------------
T ss_pred HcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998865432
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 004726 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (733)
Q Consensus 244 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~ 291 (733)
.+|+.++.+...+++++++.|.+.+..++.|+|++|++++|++||+
T Consensus 205 --~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~ 250 (250)
T 2a7k_A 205 --NTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY 250 (250)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred --HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 4567777777777899999999999999999999999999999874
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-49 Score=405.55 Aligned_cols=254 Identities=33% Similarity=0.429 Sum_probs=224.4
Q ss_pred CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 2 ~~~~v~~~~~--~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
+|+.+.++.. .++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~- 80 (260)
T 1mj3_A 2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD- 80 (260)
T ss_dssp CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH-
T ss_pred CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchH-
Confidence 4677777762 5689999999994 79999999999999999999999999999999999999999999875321100
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
.........+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 81 --~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 157 (260)
T 1mj3_A 81 --CYSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL 157 (260)
T ss_dssp --HHHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred --HHHHHHHHHH-HHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 0000011123 4588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|++||++++|+||+++||||+|+|++++++++.+++++++..+|.++
T Consensus 158 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------ 207 (260)
T 1mj3_A 158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIV------------------------------ 207 (260)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHH------------------------------
T ss_pred HHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999887543
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus 208 ------~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~ 258 (260)
T 1mj3_A 208 ------AMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFK 258 (260)
T ss_dssp ------HHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred ------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 356788888888899999999999999999999999999999999988753
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-49 Score=405.22 Aligned_cols=248 Identities=24% Similarity=0.356 Sum_probs=220.5
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccch
Q 004726 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
+.++ +++|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++..............
T Consensus 2 i~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 79 (253)
T 1uiy_A 2 VQVE--KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH 79 (253)
T ss_dssp EEEE--CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred EEEE--eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHH
Confidence 4555 5789999999995 899999999999999999999999999999999999999999998865310000000110
Q ss_pred -h-HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 85 -V-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 85 -~-~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
. .++++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|..+|++|
T Consensus 80 ~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l 157 (253)
T 1uiy_A 80 SLSLMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDL 157 (253)
T ss_dssp HHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHH
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHH
Confidence 1 34556 679999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
++||++++|+||+++||||+|+|++++.+++.+++++++..+|.++
T Consensus 158 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~---------------------------------- 203 (253)
T 1uiy_A 158 LLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSL---------------------------------- 203 (253)
T ss_dssp HHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH----------------------------------
T ss_pred HHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999876433
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhc
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~ 293 (733)
..+|+.++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.
T Consensus 204 --~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~ 252 (253)
T 1uiy_A 204 --RLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR 252 (253)
T ss_dssp --HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred --HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCC
Confidence 2567888888888999999999999999999999999999999998875
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=419.45 Aligned_cols=256 Identities=24% Similarity=0.269 Sum_probs=188.0
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-------cccCCCCchhhhhc
Q 004726 3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-------RFSGGFDINVFQKV 73 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~-------~F~aG~Dl~~~~~~ 73 (733)
|++|.++++ +++|++||||||+ .|+||.+|+++|.++|+.++.|+++|+|||||.|+ .||+|+|++++...
T Consensus 54 ~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~ 133 (334)
T 3t8b_A 54 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS 133 (334)
T ss_dssp CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred CceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence 677999983 4899999999995 69999999999999999999999999999999996 89999999987432
Q ss_pred cC---C-------CcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeCccccCCCCC
Q 004726 74 HG---A-------GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIP 142 (733)
Q Consensus 74 ~~---~-------~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~P 142 (733)
.. . ............++ +.|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p 212 (334)
T 3t8b_A 134 GYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD 212 (334)
T ss_dssp --------------------CCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred cccccccccchhhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence 11 0 00011112234555 67999999999999999999999999999999999 9999999999999999
Q ss_pred ChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHH
Q 004726 143 GFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSE 222 (733)
Q Consensus 143 ~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (733)
++|++++|+|++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|+..+|.+++
T Consensus 213 ~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~------------- 279 (334)
T 3t8b_A 213 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQR------------- 279 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------
T ss_pred cccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999875443
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.... .+...+..|.+.+..++.|+|++|++.+|++||+|.+.+
T Consensus 280 -----------------------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~~ 329 (334)
T 3t8b_A 280 -----------------------MLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP 329 (334)
T ss_dssp -----------------------HHHHHHHHTCC-CC-------------------------------------
T ss_pred -----------------------HHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 45667776643 445566778888899999999999999999999998654
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=408.77 Aligned_cols=247 Identities=21% Similarity=0.285 Sum_probs=222.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCc-ccCCCCchhhhhccCCCc--c
Q 004726 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKVHGAGD--V 79 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~-F~aG~Dl~~~~~~~~~~~--~ 79 (733)
|+.|.++. +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|+. ||+|+|++++........ .
T Consensus 7 ~~~v~~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~ 85 (289)
T 3h0u_A 7 YETIKARL-DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAG 85 (289)
T ss_dssp CSSEEEEE-ETTEEEEEECCTTTCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTS
T ss_pred CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhH
Confidence 68899999 7999999999999999999999999999999999999999999999965 566779998865321110 0
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
........+++ .++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..+
T Consensus 86 ~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~ 164 (289)
T 3h0u_A 86 GPGDASLGMLF-RKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGR 164 (289)
T ss_dssp STTCCSHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHH
Confidence 12334455677 6799999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|++||++++|+||+++||||+|||++++++++.++|++++..||.+++
T Consensus 165 A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~----------------------------- 215 (289)
T 3h0u_A 165 ALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDALI----------------------------- 215 (289)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~ 288 (733)
.+|++++.... +++++++.|.+.+..++.|+|++|++++|++
T Consensus 216 -------~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle 257 (289)
T 3h0u_A 216 -------AAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK 257 (289)
T ss_dssp -------HHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred -------HHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 56778888777 8999999999999999999999999999999
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-49 Score=405.68 Aligned_cols=244 Identities=25% Similarity=0.381 Sum_probs=200.7
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.... .
T Consensus 8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~------~ 80 (256)
T 3pe8_A 8 SPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTT------E 80 (256)
T ss_dssp CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC-----------
T ss_pred CCcEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhH------H
Confidence 56789998 8899999999995 79999999999999999999999999999999999999999999876431 1
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
..... ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus 81 ----~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ 155 (256)
T 3pe8_A 81 ----LPDIS-PKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARR 155 (256)
T ss_dssp --------C-CCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred ----HHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHH
Confidence 11223 4588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|++||++++|+||+++||||+|+|++++.+++.++|++++..+|.+++
T Consensus 156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 203 (256)
T 3pe8_A 156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVR-------------------------------- 203 (256)
T ss_dssp HHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999998875433
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHhhhhhcC
Q 004726 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL---VMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~---~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.+...+++++++.|.+.+... ..++|++|++.+|++||++.+
T Consensus 204 ----~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~~ 255 (256)
T 3pe8_A 204 ----ALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQV 255 (256)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred ----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCccC
Confidence 5677888888888999999999997654 677888999999999999875
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=403.57 Aligned_cols=251 Identities=24% Similarity=0.322 Sum_probs=206.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC--CCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--AGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~--~~~ 78 (733)
|+++.+.++..+++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.|+.||+|+|++++..... ...
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 82 (263)
T 3l3s_A 3 LSQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEG 82 (263)
T ss_dssp -----CEEEEESSSEEEEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCS
T ss_pred CCccceEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccc
Confidence 346677777767899999999995599999999999999999999999999999999999999999998865311 011
Q ss_pred ---ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 79 ---VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 79 ---~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
...+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+|++|
T Consensus 83 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~-~g~~~~l~r~vG 160 (263)
T 3l3s_A 83 RAFVTDLFEACSALM-LDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFC-TTPAVAVSRVIG 160 (263)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCC-HHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCC-ccHHHHHHHHcC
Confidence 112223344566 679999999999999999999999999999999999999999999999995 678999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (733)
..+|++|++||++++|+||+++||||+|+|++++++++.++|++++..||.+++
T Consensus 161 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------- 214 (263)
T 3l3s_A 161 RRAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAPLR-------------------------- 214 (263)
T ss_dssp HHHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHH--------------------------
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999998875433
Q ss_pred HhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 004726 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (733)
Q Consensus 236 ~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~k 289 (733)
.+|++++.....+++++++.|.+.+..++.|+|++|++++|-+.
T Consensus 215 ----------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~ 258 (263)
T 3l3s_A 215 ----------RGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGH 258 (263)
T ss_dssp ----------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHC--------------
T ss_pred ----------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcc
Confidence 56788899889999999999999999999999999999999764
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=400.91 Aligned_cols=242 Identities=26% Similarity=0.354 Sum_probs=210.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++.|.++. +++|++||||||+ .|+||.+|+++|.++++.+++| ++|+|||||.|++||+|+|++... ....
T Consensus 20 ~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~------~~~~ 91 (264)
T 3he2_A 20 GSMIGITQ-AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA------FAAD 91 (264)
T ss_dssp --CEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT------TGGG
T ss_pred CCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch------hhHH
Confidence 45788998 8899999999995 7999999999999999999988 999999999999999999998311 1122
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ 170 (264)
T 3he2_A 92 YPDRLIELH-KAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA 170 (264)
T ss_dssp HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHH
Confidence 333445666 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|++||++++|+||+++||||+|++ .+++.++|+++++.+|.+++
T Consensus 171 llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~p~a~~-------------------------------- 214 (264)
T 3he2_A 171 MLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLAPLAIQ-------------------------------- 214 (264)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence 999999999999999999999986 46789999999998875433
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.. .+++++++.|.+.+..++.|+|++|++.+|++||+|.+.
T Consensus 215 ----~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~ 262 (264)
T 3he2_A 215 ----HAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQ 262 (264)
T ss_dssp ----HHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred ----HHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 456677765 345667888999999999999999999999999998864
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=402.73 Aligned_cols=243 Identities=28% Similarity=0.448 Sum_probs=215.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+ +.|.++. +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... ....
T Consensus 22 m~-~~v~~~~-~~~Va~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~ 98 (277)
T 4di1_A 22 MN-EFVSVVA-DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNA-PEAD 98 (277)
T ss_dssp -C-CSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCH-HHHH
T ss_pred CC-ceEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccCh-HHHH
Confidence 44 5789998 7999999999995599999999999999999999999999999999999999999999875321 1122
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus 99 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ 177 (277)
T 4di1_A 99 TAARVRLEAI-DAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAK 177 (277)
T ss_dssp HHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHH
Confidence 2233345666 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|++||++++|+||+++||||+|+|++++.+++.++|++++..|+.++
T Consensus 178 ~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------- 225 (277)
T 4di1_A 178 ELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPRAL-------------------------------- 225 (277)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHH--------------------------------
T ss_pred HHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999887543
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhc
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~ 293 (733)
..+|++++.+...+++++++.|...+..++.|+ +||+|+
T Consensus 226 ----~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~----------ekR~P~ 264 (277)
T 4di1_A 226 ----AAAKAVINDVFELEATERAAAERRRYVELFAAG----------QRGPDG 264 (277)
T ss_dssp ----HHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG----------GC----
T ss_pred ----HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc----------ccCCCc
Confidence 356888999999999999999999999999998 888887
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-48 Score=401.58 Aligned_cols=254 Identities=26% Similarity=0.411 Sum_probs=219.5
Q ss_pred CcEEEEE---ecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc
Q 004726 4 PRVTMEV---GNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 4 ~~v~~~~---~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (733)
..+.++. .+++|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 8 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 86 (272)
T 1hzd_A 8 DELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS-SE 86 (272)
T ss_dssp CSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCH-HH
T ss_pred CcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccCh-HH
Confidence 3455553 25789999999995 7999999999999999999999999999999998 69999999998754211 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 87 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 165 (272)
T 1hzd_A 87 VGPFVSKIRAVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSL 165 (272)
T ss_dssp HHHHHHHHHHHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHH
Confidence 111222344556 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchH----HHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEEL----LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l----~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (733)
|++|++||++++|+||+++||||+|+|++++ .+.+.+++++++..+|.++
T Consensus 166 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a~-------------------------- 219 (272)
T 1hzd_A 166 AKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAM-------------------------- 219 (272)
T ss_dssp HHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHH--------------------------
T ss_pred HHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHHHH--------------------------
Confidence 9999999999999999999999999998875 4567777777777665332
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus 220 ----------~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~ 270 (272)
T 1hzd_A 220 ----------RVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK 270 (272)
T ss_dssp ----------HHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred ----------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 356788888888899999999999999999999999999999999998753
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=409.47 Aligned_cols=290 Identities=23% Similarity=0.310 Sum_probs=224.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc--
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD-- 78 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~-- 78 (733)
.+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus 5 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~ 83 (363)
T 3bpt_A 5 AEEVLLGK-KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKI 83 (363)
T ss_dssp CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCC
T ss_pred CcceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHH
Confidence 45788888 7899999999995 7999999999999999999999999999999998 89999999998864321111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +
T Consensus 84 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~ 161 (363)
T 3bpt_A 84 APVFFREEYMLN-NAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-L 161 (363)
T ss_dssp HHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-H
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-H
Confidence 111112223455 57999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhcc------------CCC---------
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT------------DKL--------- 217 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~------------~~~--------- 217 (733)
|++|++||++++|+||+++||||+|||++++.+.+.++++ +...++..+....+. ..+
T Consensus 162 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~-l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 240 (363)
T 3bpt_A 162 GYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLA-LKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINS 240 (363)
T ss_dssp HHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHH
Confidence 9999999999999999999999999999998776554432 111111111100000 000
Q ss_pred ----CCcHHHHHHH-----HHHHHHHHHhCCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004726 218 ----GSLSEAREVL-----KLARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (733)
Q Consensus 218 ----~~~~~~~~~~-----~~~~~~~~~~~~~~-~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~ 287 (733)
+........+ ..+....++...+- .+...+|++++.+...+++++++.|.+.+..++.|+|++|++++|+
T Consensus 241 ~f~~~~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl 320 (363)
T 3bpt_A 241 CFSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVL 320 (363)
T ss_dssp HTTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHT
T ss_pred HhCCCCHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhhee
Confidence 0000000001 00112223333333 3677889999999999999999999999999999999999999999
Q ss_pred -hh-hhhcCCC
Q 004726 288 -AQ-RATSKVP 296 (733)
Q Consensus 288 -~k-r~~~~~~ 296 (733)
+| |+|++.+
T Consensus 321 ~eK~r~P~~~~ 331 (363)
T 3bpt_A 321 IDKDQSPKWKP 331 (363)
T ss_dssp TSCCCCCCCSS
T ss_pred eCCCCCCCCCC
Confidence 77 8887654
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=393.52 Aligned_cols=243 Identities=19% Similarity=0.307 Sum_probs=204.0
Q ss_pred cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccc
Q 004726 5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP 83 (733)
Q Consensus 5 ~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (733)
.|.++. +++|++||||||+ .|++|.+|+++|.++++.+++ +++|+|||||.|++||+|+|++++....... .....
T Consensus 8 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~ 84 (254)
T 3isa_A 8 PLAIER-RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGD-LLLRM 84 (254)
T ss_dssp SEEEEE-CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHH-HHHHH
T ss_pred eEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchh-HHHHH
Confidence 488998 8999999999995 899999999999999999987 5899999999999999999999886532111 11111
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHH
Q 004726 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (733)
Q Consensus 84 ~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ 163 (733)
...++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++++|++++|..+|++|+
T Consensus 85 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~ 160 (254)
T 3isa_A 85 VRIEMLL-QRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSIL 160 (254)
T ss_dssp HHHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHH
Confidence 2234556 679999999999999999999999999999999999999999999999998 479999999999999999
Q ss_pred HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchH
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (733)
+||++++|+||+++||||+|+|++++.+++.+++++++..++.+++
T Consensus 161 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------- 206 (254)
T 3isa_A 161 GSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRA---------------------------------- 206 (254)
T ss_dssp TTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHH----------------------------------
T ss_pred HhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 244 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|+.+.. +.++.|.+.+..++.|+|++|++.+|++||+|.+.+.
T Consensus 207 --~~K~~l~~-------~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~~~ 251 (254)
T 3isa_A 207 --TLHRVLRD-------DHDDADLAALARSAAQPGFKARIRDYLAQPAAEGHHH 251 (254)
T ss_dssp --HHHHHHSC-------CCHHHHHHHHHHHHHSTTHHHHHHHHHHC--------
T ss_pred --HHHHHHhh-------hhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCC
Confidence 23444421 2345688889999999999999999999999998763
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=389.49 Aligned_cols=238 Identities=23% Similarity=0.296 Sum_probs=213.1
Q ss_pred EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccch
Q 004726 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
..++. +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... . ..
T Consensus 5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~-~~-- 79 (243)
T 2q35_A 5 QLTEL-GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGE-V-EV-- 79 (243)
T ss_dssp EEEEE-ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTC-C-CC--
T ss_pred EEEEe-eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchh-h-HH--
Confidence 34556 789999999999 589999999999999999999999999999999999999999999886532111 1 11
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 80 --~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 156 (243)
T 2q35_A 80 --LDLS-GLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIY 156 (243)
T ss_dssp --CCCH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHH
T ss_pred --HHHH-HHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHH
Confidence 2345 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHH
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (733)
||++++|+||+++||||+|+|++++.+++.+++++++..+|.+++
T Consensus 157 tg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 201 (243)
T 2q35_A 157 TGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLV----------------------------------- 201 (243)
T ss_dssp HCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHH-----------------------------------
T ss_pred cCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999998865433
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004726 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (733)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~ 287 (733)
.+|+.++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus 202 -~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~ 243 (243)
T 2q35_A 202 -ALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF 243 (243)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred -HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence 456777777667788999999999999999999999999875
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=415.27 Aligned_cols=288 Identities=18% Similarity=0.226 Sum_probs=225.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCC----
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA---- 76 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~---- 76 (733)
++.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......
T Consensus 41 ~~~v~~~~-~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~ 119 (407)
T 3ju1_A 41 FQTLATAS-GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQ 119 (407)
T ss_dssp EEEEECTT-SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSS
T ss_pred cceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccc
Confidence 34566776 7899999999995 7999999999999999999999999999999999 799999999998643110
Q ss_pred --CcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhcccc
Q 004726 77 --GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154 (733)
Q Consensus 77 --~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~ 154 (733)
.....+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus 120 ~~~~~~~~~~~~~~l~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~ 198 (407)
T 3ju1_A 120 VTEVAKVFFEEEYRLD-YLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMP 198 (407)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSS
T ss_pred cHHHHHHHHHHHHHHH-HHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhh
Confidence 00112222233455 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHH---H----------------HHHHHHHHHccCc----------
Q 004726 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK---V----------------SRLWALDIAARRK---------- 205 (733)
Q Consensus 155 G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~---~----------------a~~~a~~~a~~~~---------- 205 (733)
| .+|++|++||++++|+||+++||||+|||++++.+ + +.++++++.....
T Consensus 199 g-~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~ 277 (407)
T 3ju1_A 199 G-KMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAE 277 (407)
T ss_dssp T-THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHH
T ss_pred H-HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHH
Confidence 9 99999999999999999999999999999999887 3 3333333321110
Q ss_pred --hhhhhhhccCCCCCcHHHHHHHH-------HHHH-HHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC
Q 004726 206 --PWIRSLHRTDKLGSLSEAREVLK-------LARL-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM 275 (733)
Q Consensus 206 --~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~ 275 (733)
..+..... ..+......+. .+.. ..+...+.-.+...+|++++.+...+++++++.|.+.+..++.
T Consensus 278 ~~~~I~~~f~----~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~ 353 (407)
T 3ju1_A 278 SQEMIDRLMA----GSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCA 353 (407)
T ss_dssp THHHHHHHTC----SCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC
Confidence 00111110 11111100000 0111 1122233455778889999999999999999999999999999
Q ss_pred CHHHHHHHHHHH-hh-hhhcCCCC
Q 004726 276 LDTSRGLVHVFF-AQ-RATSKVPN 297 (733)
Q Consensus 276 s~~~~~~i~aF~-~k-r~~~~~~~ 297 (733)
++|++|++++|+ +| |+|++.+.
T Consensus 354 s~D~~EGvrAflidKdr~P~w~~~ 377 (407)
T 3ju1_A 354 KGDFCEGVRALLIDKDKQPKWQFA 377 (407)
T ss_dssp HSSHHHHHHHHTTSCCCCCCCSSS
T ss_pred CHHHHHHHHHHHhcCCcCCCCCCC
Confidence 999999999999 88 88888664
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-47 Score=394.71 Aligned_cols=243 Identities=19% Similarity=0.185 Sum_probs=204.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc-
Q 004726 1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD- 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~- 78 (733)
|+|+.+.++. +++|++|||||| +.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 6 m~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~ 84 (280)
T 1pjh_A 6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTN 84 (280)
T ss_dssp CCBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------
T ss_pred ccCCceEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhccccccc
Confidence 6678899999 789999999999 5899999999999999999999999999999999999999999998754211110
Q ss_pred --cc---ccc----hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeCccccCCCCCChhhhh
Q 004726 79 --VS---LMP----DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQ 148 (733)
Q Consensus 79 --~~---~~~----~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~P~~g~~~ 148 (733)
.. .+. ...++++ ..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~ 163 (280)
T 1pjh_A 85 KYPSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV 163 (280)
T ss_dssp CCSSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred chhhhHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence 00 011 1123455 67899999999999999999999999999999999 9999999999999999999999
Q ss_pred hhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcc-----hHHHHHH-HHHHHHHccCchhhhhhhccCCCCCcHH
Q 004726 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-----ELLKVSR-LWALDIAARRKPWIRSLHRTDKLGSLSE 222 (733)
Q Consensus 149 ~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~-----~l~~~a~-~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (733)
+|+|++|..+|++|++||++++|+||+++||||+|||++ ++.+++. ++|++++..+|.+++
T Consensus 164 ~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~------------- 230 (280)
T 1pjh_A 164 SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCL------------- 230 (280)
T ss_dssp HHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHH-------------
T ss_pred HHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHH-------------
Confidence 999999999999999999999999999999999999885 7888885 999999998875433
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhc
Q 004726 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (733)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~ 293 (733)
.+|++++.... ..++ ...++|+++++.+|++||++.
T Consensus 231 -----------------------~~K~~l~~~~~----~~l~--------~~~~~d~~e~~~af~~kr~~e 266 (280)
T 1pjh_A 231 -----------------------GMKKLLKSNHI----DAFN--------KANSVEVNESLKYWVDGEPLK 266 (280)
T ss_dssp -----------------------HHHHHHHTTTH----HHHH--------HHHHHHHHHHHHHHHHTHHHH
T ss_pred -----------------------HHHHHHHHhHH----HHHH--------HhhhHHHHHHHHHHhCCccHH
Confidence 34556654332 2222 125889999999999999884
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=378.31 Aligned_cols=230 Identities=23% Similarity=0.253 Sum_probs=201.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+ +.|.++. +++|++||||||+.|++|.+|+++|.++++.+++| ++|+|||||.|++||+|+|++++..... ....
T Consensus 3 M~-~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~ 78 (233)
T 3r6h_A 3 MS-GPVTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEA-KPAI 78 (233)
T ss_dssp ---CCEEEEE-ETTEEEEEECCSSSCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---C-HHHH
T ss_pred CC-CceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccCh-HHHH
Confidence 55 5688998 88999999999989999999999999999999987 6899999999999999999999865321 1122
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus 79 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~ 157 (233)
T 3r6h_A 79 DMLRGGFELS-YRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQ 157 (233)
T ss_dssp HHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence 2333345666 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
++++||++++|+||+++||||+|+|++++.+++.++|+++++.||.+++
T Consensus 158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 206 (233)
T 3r6h_A 158 QAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHN------------------------------- 206 (233)
T ss_dssp HHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred HHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875443
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFK 271 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~ 271 (733)
.+|++++.....+++++++.|.+.|.
T Consensus 207 -----~~K~~l~~~~~~~l~~~l~~e~~~f~ 232 (233)
T 3r6h_A 207 -----ATKLRARAEALKAIRAGIDGIEAEFG 232 (233)
T ss_dssp -----HHHHHTTHHHHHHHHHHHHTSHHHHC
T ss_pred -----HHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 45677777777788899998888763
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=384.06 Aligned_cols=239 Identities=15% Similarity=0.214 Sum_probs=204.5
Q ss_pred CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~-~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+.+.++. ++ +|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|+.||+|+|++++..........
T Consensus 22 ~~~i~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~ 100 (263)
T 2j5g_A 22 YENLHFHR-DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWD 100 (263)
T ss_dssp CTTEEEEE-CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHH
T ss_pred CCeEEEEE-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHH
Confidence 56789998 67 99999999994 79999999999999999999999999999999999999999999875421111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeC-ccccCCCCCChhhhhhhccccCHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~-pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.+.....+++ .++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|++|..+|
T Consensus 101 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A 178 (263)
T 2j5g_A 101 KTYWEGKKVL-QNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRG 178 (263)
T ss_dssp HHHHHHHHHH-HHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence 1222234556 6789999999999999999 5999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|+|++++.+++.++|++++..+|.+++
T Consensus 179 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 228 (263)
T 2j5g_A 179 RYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLR------------------------------ 228 (263)
T ss_dssp HHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred HHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~ 291 (733)
.+|++++.....+++++++.| ...|++++|++||.
T Consensus 229 ------~~K~~l~~~~~~~l~~~l~~e-----------~~~eg~~af~~~~~ 263 (263)
T 2j5g_A 229 ------YTRVALTQRLKRLVNEGIGYG-----------LALEGITATDLRNT 263 (263)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTC-
T ss_pred ------HHHHHHHhhhhccHHHHHHHH-----------HHHhhHHHHHhccC
Confidence 456666666555555655554 45699999999873
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=375.05 Aligned_cols=225 Identities=20% Similarity=0.283 Sum_probs=199.7
Q ss_pred CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccc
Q 004726 4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP 83 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (733)
+.+.++. +++|++||||||+.|++|.+|+++|.++++.++.| +|+|||||.|++||+|+|++++.... .....+.
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~~--~~~~~~~ 80 (232)
T 3ot6_A 6 DLVSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSSA--EAAINLV 80 (232)
T ss_dssp HHEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHCH--HHHHHHH
T ss_pred cceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhCh--HHHHHHH
Confidence 4688898 88999999999988999999999999999999976 48999999999999999999986521 1122233
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 84 ~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
...++++ .++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++++++++++++|..+|++|
T Consensus 81 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l 159 (232)
T 3ot6_A 81 AQGSTLA-RRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRS 159 (232)
T ss_dssp HHHHHHH-HHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHH
Confidence 3445666 6799999999999999999999999999999999998 8999999999999888889999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
++||++++|+||+++||||+|+|++++.+++.++|+++++.||.+++
T Consensus 160 ~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 206 (232)
T 3ot6_A 160 VINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNAHK--------------------------------- 206 (232)
T ss_dssp HTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH---------------------------------
T ss_pred HHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVF 270 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~ 270 (733)
.+|++++.....+++++++.|.+.|
T Consensus 207 ---~~K~~l~~~~~~~l~~~l~~E~~~~ 231 (232)
T 3ot6_A 207 ---KTKLKVRKGLLDTLDAAIEQDRQHM 231 (232)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHhHhHHHHHHHHHHHhc
Confidence 5677888888888999999998764
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=380.96 Aligned_cols=255 Identities=18% Similarity=0.192 Sum_probs=215.5
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcCCCcccCCCCchhhh
Q 004726 3 APRVTMEVG-NDGVAIITLINPP-----VNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGNGGRFSGGFDINVFQ 71 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p~-----~Nal~~~~~~~l~~~l~~~~~-----d~~v~~vvl~g~g~~F~aG~Dl~~~~ 71 (733)
|+++.+..+ +++|++||||||+ +|+||.+|+++|.++++.++. |+++|+|||+|.|++||+|+|++++.
T Consensus 29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~ 108 (305)
T 3m6n_A 29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFC 108 (305)
T ss_dssp CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHH
T ss_pred CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHH
Confidence 556666542 7889999999983 559999999999999999987 58999999999999999999999986
Q ss_pred hccCCCcccc---cchhHHHHHHHHH---hcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChh
Q 004726 72 KVHGAGDVSL---MPDVSVELVVNLI---EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG 145 (733)
Q Consensus 72 ~~~~~~~~~~---~~~~~~~~~~~~i---~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g 145 (733)
.......... +.......+ ..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g 187 (305)
T 3m6n_A 109 QLIREGDRARLLDYAQRCVRGV-HAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG 187 (305)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH-HHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred hccccccHHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence 5321111111 111122222 223 468999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHH
Q 004726 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEARE 225 (733)
Q Consensus 146 ~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 225 (733)
++++|+|++|..+|++|++||++++|+||+++||||+|||++++++++.++|++++. +|.+
T Consensus 188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~p~a------------------ 248 (305)
T 3m6n_A 188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR-TPHA------------------ 248 (305)
T ss_dssp HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT-CHHH------------------
T ss_pred HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh-ChHH------------------
Confidence 999999999999999999999999999999999999999999999999999999985 5432
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 226 VLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 226 ~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
...+|++++.....+++++++.|.+.+..++.|+|....+..++.+++.++.
T Consensus 249 ------------------~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q~~~~ 300 (305)
T 3m6n_A 249 ------------------WAAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRS 300 (305)
T ss_dssp ------------------HHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---
T ss_pred ------------------HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhhcc
Confidence 2357888999999999999999999999999999998888877777665543
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-44 Score=381.56 Aligned_cols=204 Identities=25% Similarity=0.334 Sum_probs=174.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|++|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 32 ~~~~~i~~e~-~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~ 110 (333)
T 3njd_A 32 DNLKTMTYEV-TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGG 110 (333)
T ss_dssp TSCSSEEEEE-ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC-------------
T ss_pred CCCCeEEEEE-ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccccc
Confidence 4578899999 8999999999995 7999999999999999999999999999999999999999999988653211100
Q ss_pred -----------------------------cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCce
Q 004726 80 -----------------------------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130 (733)
Q Consensus 80 -----------------------------~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~ 130 (733)
..+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~ 189 (333)
T 3njd_A 111 GSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGF-ASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAK 189 (333)
T ss_dssp --CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHH-THHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCE
T ss_pred ccccccccccccccccccccccccchhhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCe
Confidence 00111223444 568899999999999999999999999999999999999
Q ss_pred EeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhh
Q 004726 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (733)
Q Consensus 131 f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~ 209 (733)
|++||+++|++|++| +|++++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|+..|+.+++
T Consensus 190 f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~ 265 (333)
T 3njd_A 190 IGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLI 265 (333)
T ss_dssp EECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred eechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999876 5899999999999999999999999999999999999999999999999999999876544
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=369.74 Aligned_cols=237 Identities=18% Similarity=0.236 Sum_probs=200.5
Q ss_pred CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+.+.++. +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++... .......+
T Consensus 16 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-~~~~~~~~ 93 (257)
T 1szo_A 16 ENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLG-TPHDWDEI 93 (257)
T ss_dssp TTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCS-SHHHHHHH
T ss_pred ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcC-CHHHHHHH
Confidence 5689998 789999999999 57999999999999999999999999999999999999999999987531 11111112
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeC-ccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~-pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
....++++ .++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|++++|..+|++
T Consensus 94 ~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~ 171 (257)
T 1szo_A 94 IFEGQRLL-NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRY 171 (257)
T ss_dssp HHHHHHHH-HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHH-HHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHH
Confidence 22234556 6789999999999999999 5999999999999999999999 9999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|++||++++|+||+++||||+|+|++++.+++.++|++++..+|.+++
T Consensus 172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 219 (257)
T 1szo_A 172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR-------------------------------- 219 (257)
T ss_dssp HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999998875433
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 004726 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~ 291 (733)
.+|++++.....+++++++.|.. .+++++|-.+-+
T Consensus 220 ----~~K~~l~~~~~~~l~~~l~~~~~-----------~eg~~a~~~~~~ 254 (257)
T 1szo_A 220 ----YARKVLTRQLRRVMEADLSLGLA-----------HEALAAIDLGME 254 (257)
T ss_dssp ----HHHHHHSHHHHHHHHHHHHHHHH-----------HHHHHHHHHC--
T ss_pred ----HHHHHHHhhhhccHHHHHHHHHH-----------Hhhhhhhhcccc
Confidence 45566666655566666665543 367888876544
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=390.72 Aligned_cols=246 Identities=23% Similarity=0.213 Sum_probs=201.0
Q ss_pred CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--------C-CcccCCCCchhhhhc
Q 004726 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--------G-GRFSGGFDINVFQKV 73 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~--------g-~~F~aG~Dl~~~~~~ 73 (733)
+.|.++. +++|++|||||| +.|+||.+|+++|.++++.++.|+++|+|||||. | ++||+|+|++++...
T Consensus 167 ~~v~~e~-~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~ 245 (440)
T 2np9_A 167 EAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG 245 (440)
T ss_dssp SSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred ceEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence 4688888 789999999999 5799999999999999999999999999999994 6 799999999998653
Q ss_pred cCCCccc---ccchhHHHHHHHHH------------hcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccC
Q 004726 74 HGAGDVS---LMPDVSVELVVNLI------------EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL 138 (733)
Q Consensus 74 ~~~~~~~---~~~~~~~~~~~~~i------------~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~ 138 (733)
....... ......+.++ ..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~l 324 (440)
T 2np9_A 246 GISLVDFLMRRELGYIHKLV-RGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKE 324 (440)
T ss_dssp CCCTTTTHHHHHHTHHHHHH-HCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTT
T ss_pred CcchhhhhhHHHHHHHHHHH-HHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhcc
Confidence 2111000 0001123333 333 47999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCC
Q 004726 139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG 218 (733)
Q Consensus 139 Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~ 218 (733)
|++|++| +++|+|++|..+|++|++||++|+|+||+++||||+|||++++++++.+++.+++. .
T Consensus 325 Gl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~---~------------ 388 (440)
T 2np9_A 325 GIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG---D------------ 388 (440)
T ss_dssp CCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---H------------
T ss_pred CcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---H------------
Confidence 9999887 68999999999999999999999999999999999999999999999988877632 1
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhh
Q 004726 219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGG---YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (733)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~---~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~ 292 (733)
++..+|++++.... +. .+.++.|...+..++.|+|++|++.+|++||++
T Consensus 389 ------------------------Av~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~a 440 (440)
T 2np9_A 389 ------------------------AVLANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPPA 440 (440)
T ss_dssp ------------------------HHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC-----
T ss_pred ------------------------HHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCC
Confidence 12245666666544 33 355667788889999999999999999999863
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=369.81 Aligned_cols=205 Identities=27% Similarity=0.351 Sum_probs=173.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|+.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++.........
T Consensus 17 ~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~ 95 (279)
T 3t3w_A 17 RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTL 95 (279)
T ss_dssp --CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCH
T ss_pred ccCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccch
Confidence 4678899999 8899999999995 8999999999999999999999999999999999999999999988653221111
Q ss_pred c-cc---chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 80 S-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 80 ~-~~---~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
. .. .....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+++++.+ ++++|
T Consensus 96 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~~-~~~vG 172 (279)
T 3t3w_A 96 EFIYAHESRRYLEYS-LRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHGH-TWELG 172 (279)
T ss_dssp HHHHHHHHHHTHHHH-HHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCCH-HHHHC
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHHH-HhhcC
Confidence 0 11 11223455 5789999999999999999999999999999999999999999999999 55555544 99999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhh
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~ 209 (733)
..+|++|++||++++|+||+++||||+|||++++++++.++|+++++.|+.+++
T Consensus 173 ~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 226 (279)
T 3t3w_A 173 PRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPFALR 226 (279)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999998875443
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=355.08 Aligned_cols=204 Identities=25% Similarity=0.333 Sum_probs=183.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-----------CCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEc-CCCcccCCCCchh
Q 004726 3 APRVTMEVGNDGVAIITLINPP-----------VNALAIPIVAGLKDKFEEATSR-DDVKAIVLTG-NGGRFSGGFDINV 69 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-----------~Nal~~~~~~~l~~~l~~~~~d-~~v~~vvl~g-~g~~F~aG~Dl~~ 69 (733)
|++|.++. +++|++||||||+ .|++|.+|+.+|.++++.++.| +++|+||||| .|+.||+|+|+++
T Consensus 20 ~~~v~ve~-~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~e 98 (556)
T 2w3p_A 20 YKHWKLSF-NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFM 98 (556)
T ss_dssp CSSEEEEE-ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHH
T ss_pred CceEEEEe-eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHH
Confidence 45788998 7899999999995 6999999999999999999999 9999999999 8999999999999
Q ss_pred hhhccCCCcccccchhHHHHHHHHH----hcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCcccc-CCCCC
Q 004726 70 FQKVHGAGDVSLMPDVSVELVVNLI----EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIP 142 (733)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~-~Gl~P 142 (733)
+...... ....+....++++ ..| .++||||||+|||+|+|||++|+++||+|||+++ ++|++||++ +|++|
T Consensus 99 l~~~~~~-~~~~~~~~~~~l~-~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~P 176 (556)
T 2w3p_A 99 LGLSTHA-WKVNFCKFTNETR-NGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLP 176 (556)
T ss_dssp HHHSCHH-HHHHHHHHHHHHH-HHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCC
T ss_pred HhhcccH-HHHHHHHHHHHHH-HHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCC
Confidence 8653211 1111222344555 567 8999999999999999999999999999999999 999999999 99999
Q ss_pred Chhhhhhhc--cccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhh
Q 004726 143 GFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (733)
Q Consensus 143 ~~g~~~~l~--r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~ 209 (733)
++|++++|+ |++|..+|++|++||++++|+||+++||||+|+|++++.+++.++|++++..++.+++
T Consensus 177 g~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p~Av~ 245 (556)
T 2w3p_A 177 GTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAH 245 (556)
T ss_dssp TTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCCCCTT
T ss_pred CccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCChHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999887654
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-23 Score=186.43 Aligned_cols=103 Identities=20% Similarity=0.153 Sum_probs=85.6
Q ss_pred HcCCeeE-EEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhC
Q 004726 478 IIKKVPV-VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAF 554 (733)
Q Consensus 478 ~lG~~~v-~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~ 554 (733)
.++|.+| +++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|+++++++.+++.+
T Consensus 3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~ 82 (110)
T 3ctv_A 3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF 82 (110)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3688899 88999999999999999999999999997 999999999 79999999999999999999999999999988
Q ss_pred CC-CCCCcHHHHHHHHcCCCCcccCcc
Q 004726 555 PD-RSFQSPLVDLLLKSGRNGKANGKG 580 (733)
Q Consensus 555 ~~-~~~~~~~l~~~v~~g~~G~k~g~G 580 (733)
++ ++.|+++|++|+++|++|+|||+|
T Consensus 83 g~~~~~p~~~L~~~v~~G~lG~k~g~G 109 (110)
T 3ctv_A 83 GKKIFEPAKTLKEGKLEELLKAGKAEG 109 (110)
T ss_dssp CCGGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred CCCcCCCCHHHHHHHHcCCCCccCCCC
Confidence 87 556999999999999999999998
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=223.25 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=135.8
Q ss_pred cCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHH
Q 004726 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY 501 (733)
Q Consensus 422 ~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~ 501 (733)
.+++.+.++. ...+|.++++.|+++ ++++|+++++.|++++++.+.++++.+|+.|+.++|.||||+||++.++
T Consensus 324 ~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~ 397 (483)
T 3mog_A 324 ETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMI 397 (483)
T ss_dssp ECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHH
T ss_pred ccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHH
Confidence 4666766665 345688999999987 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCC-CCCCcHHHHHHHHcCCCCccc
Q 004726 502 SQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGKAN 577 (733)
Q Consensus 502 ~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~k~ 577 (733)
+|||++++++|+ +|+|||.++ .++|||+|||+|+|.+|+|+++++++.+++.+++ ++.|+++|++|+++|++|..-
T Consensus 398 ~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~ 476 (483)
T 3mog_A 398 INEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESE 476 (483)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCC
Confidence 999999999998 999999999 8999999999999999999999999999999987 555999999999999866443
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-20 Score=215.03 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=142.8
Q ss_pred cCcEEEEEeCCC-CCCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHH
Q 004726 12 NDGVAIITLINP-PVNA--LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE 88 (733)
Q Consensus 12 ~~~i~~i~l~~p-~~Na--l~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (733)
+++|++|++|+| ..|+ ++..+.++|.++|+.++.|+++|+|||++.+ .|+|+.... ...+
T Consensus 300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~~-------------~i~~ 362 (593)
T 3bf0_A 300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTASE-------------VIRA 362 (593)
T ss_dssp SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHHH-------------HHHH
T ss_pred CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHHH-------------HHHH
Confidence 578999999999 4677 6889999999999999999999999999874 477775421 1234
Q ss_pred HHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccc------------cCCCCCCh------------
Q 004726 89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGF------------ 144 (733)
Q Consensus 89 ~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~P~~------------ 144 (733)
.+ .++..++|||||+|+|.|.|||+.|+++||+|+|++++.|+.+++ ++|+.|..
T Consensus 363 ~i-~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~ 441 (593)
T 3bf0_A 363 EL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT 441 (593)
T ss_dssp HH-HHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTT
T ss_pred HH-HHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcC
Confidence 45 568889999999999999999999999999999999999999985 68987632
Q ss_pred -hhh---------------hhhccccCHHH-----HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHH
Q 004726 145 -GGT---------------QRLPRLVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA 197 (733)
Q Consensus 145 -g~~---------------~~l~r~~G~~~-----a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a 197 (733)
+.+ .++++.++..+ +.+++++|+.++|+||+++||||+|++.+++.+.+.+++
T Consensus 442 ~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a 515 (593)
T 3bf0_A 442 RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA 515 (593)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHc
Confidence 233 56778888888 899999999999999999999999999888888777654
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-20 Score=165.09 Aligned_cols=92 Identities=25% Similarity=0.364 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~ 697 (733)
+++||+||++.+++|||++|++|||+ +++|||.+|++|+|||+ |||+++|.+|+|.++++++.+++.+++ +|.|+
T Consensus 15 ~~gfi~nRll~~~~~eA~~ll~eGva-~~~dID~a~~~g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~ 90 (110)
T 3ctv_A 15 TDKINPMDFTFVEINEAVKLVEMGVA-TPQDIDTAIKLGLNRPF---GPFELAKQFGAEQIAKRLEELAKQFGKKIFEPA 90 (110)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHTTCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 57899999999999999999999999 99999999999999999 999999999999999999999999988 89999
Q ss_pred HHHHHHHHCCCCc--cccc
Q 004726 698 RFLEERATKGIPL--VRII 714 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~g 714 (733)
++|++|+++|++| +|+|
T Consensus 91 ~~L~~~v~~G~lG~k~g~G 109 (110)
T 3ctv_A 91 KTLKEGKLEELLKAGKAEG 109 (110)
T ss_dssp HHHHTTTHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCCccCCCC
Confidence 9999999999999 5766
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=177.07 Aligned_cols=167 Identities=19% Similarity=0.188 Sum_probs=129.4
Q ss_pred cCcEEEEEeCCC-CCCC-----CC--HHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccc
Q 004726 12 NDGVAIITLINP-PVNA-----LA--IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP 83 (733)
Q Consensus 12 ~~~i~~i~l~~p-~~Na-----l~--~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (733)
+++|++|+++.+ ..+. ++ .-.+++|.++|+.++.|+++|+|||++. |.|+|+....
T Consensus 2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------ 65 (240)
T 3rst_A 2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------ 65 (240)
T ss_dssp CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence 468999999887 2221 11 0136899999999999999999999986 6788886532
Q ss_pred hhHHHHHHHHHhc-CCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCc---------------------cccCCCC
Q 004726 84 DVSVELVVNLIED-CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP---------------------ELTLGVI 141 (733)
Q Consensus 84 ~~~~~~~~~~i~~-~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~p---------------------e~~~Gl~ 141 (733)
...+.+ +.+.. ++|||||+++|.|.|||++|+++||+|+|++++.|+++ +++.|..
T Consensus 66 -~i~~~l-~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~ 143 (240)
T 3rst_A 66 -EIHKKL-EEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAH 143 (240)
T ss_dssp -HHHHHH-HHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTT
T ss_pred -HHHHHH-HHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecccc
Confidence 122444 45676 89999999999999999999999999999999999999 6677877
Q ss_pred CChhhhh--------------------------hhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHH
Q 004726 142 PGFGGTQ--------------------------RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (733)
Q Consensus 142 P~~g~~~--------------------------~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (733)
++.+..+ .-.|.+......+ +++|+.+++++|+++||||++.+.+++.+.+.+
T Consensus 144 k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~ 222 (240)
T 3rst_A 144 ADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKK 222 (240)
T ss_dssp TTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 7765322 2234455554444 789999999999999999999998887776666
Q ss_pred HH
Q 004726 196 WA 197 (733)
Q Consensus 196 ~a 197 (733)
++
T Consensus 223 ~~ 224 (240)
T 3rst_A 223 DH 224 (240)
T ss_dssp HC
T ss_pred Hh
Confidence 54
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-19 Score=190.01 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=158.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+||+|||+|.||.++|..|+++|+ +|++||+++++++.....+..... ......++..+++++++++
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~a~~~ 72 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMV------------MFGSTSKVIGTDDYADISG 72 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH------------HHTCCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhh------------hcCCCcEEEECCCHHHhCC
Confidence 589999999999999999999999 999999999887753211111100 0011235666677788999
Q ss_pred CCEEEEec--------------cCChHHHHHHHHHHHHhCCCCeEE--EecCCCCCHHHHhcccCC-CCcEEEEecCCCC
Q 004726 388 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTSS-QDRIIGAHFFSPA 450 (733)
Q Consensus 388 aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~~-~~~~ig~h~~~p~ 450 (733)
||+||+++ +++.++++++++++.++++ ++++ +||++.+....+.+.... |+|++|+
T Consensus 73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------ 145 (317)
T 2ewd_A 73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------ 145 (317)
T ss_dssp CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------
Confidence 99999999 7888999999999999975 7766 577666666666666554 6788764
Q ss_pred CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhh---hhHHHHHHH-------HHHHHcCC-CHHHHH
Q 004726 451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR---AFFPYSQSA-------RLLVSLGV-DVFRID 519 (733)
Q Consensus 451 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nR---l~~~~~~Ea-------~~l~~~Gv-~~~dID 519 (733)
.|+.++......+.+.+|+. .++.+||++|| .++++++++ ..++++|+ +++++|
T Consensus 146 ------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id 210 (317)
T 2ewd_A 146 ------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQID 210 (317)
T ss_dssp ------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHH
T ss_pred ------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHH
Confidence 36788888899999999987 47999999999 888999998 88899985 999999
Q ss_pred HHHHhcCCCccHHHHHHhhch-HHHHHHH
Q 004726 520 SAIRSFGLPIGPFQLLDLAGY-GVAAATS 547 (733)
Q Consensus 520 ~a~~~~G~p~Gpf~~~D~~Gl-d~~~~~~ 547 (733)
.++... ++|||+++|..|. ++.+.+.
T Consensus 211 ~~~~~~--~~~~~ei~~~~g~g~~~~~~a 237 (317)
T 2ewd_A 211 EIVCHT--RIAWKEVADNLKTGTAYFAPA 237 (317)
T ss_dssp HHHHHH--HHHHHHHHHHHSSSCCCHHHH
T ss_pred HHHHHH--HhhHHHHHHhhcCCchHHHHH
Confidence 998433 7899999998887 5554433
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-18 Score=176.43 Aligned_cols=188 Identities=15% Similarity=0.096 Sum_probs=145.2
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC---eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
.+||+|||+|.||.+|+..|+++|+ +|++||++++++++..+. . .+..+++. +
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~----------------------~-gi~~~~~~~~ 59 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK----------------------C-GVHTTQDNRQ 59 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT----------------------T-CCEEESCHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH----------------------c-CCEEeCChHH
Confidence 3689999999999999999999999 999999999987765321 0 23344444 6
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEE-ecC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRT 461 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lvei-v~~ 461 (733)
.+++||+||+||| ++...++++++.+. ++++++|+|++++++++.+.+.+..+.+++++||+.|...+..+++ +++
T Consensus 60 ~~~~aDvVilav~--p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~ 137 (280)
T 3tri_A 60 GALNADVVVLAVK--PHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN 137 (280)
T ss_dssp HHSSCSEEEECSC--GGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred HHhcCCeEEEEeC--HHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence 7899999999998 67888999999988 8889888999999999999988887789999999999988887774 568
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCC--------CCcchhhhhHHHHHHHHH--HHHcCCCHHHHHHHH
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--------TGFAVNRAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--------pGfi~nRl~~~~~~Ea~~--l~~~Gv~~~dID~a~ 522 (733)
+.++++.++.+.++++.+|+.+++..+. .| -..-+++. +.|++. .++.|+++++.-.++
T Consensus 138 ~~~~~~~~~~v~~l~~~iG~~~~v~~E~~~d~~talsg-sgpa~~~~-~~eal~~a~v~~Gl~~~~a~~l~ 206 (280)
T 3tri_A 138 ETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSG-SGPAYIFL-IMEALQEAAEQLGLTKETAELLT 206 (280)
T ss_dssp TTSCHHHHHHHHHHHGGGEEEEECSSHHHHHHHHHHTT-SHHHHHHH-HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEECCHHHhhHHHHHhc-cHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999999999999855432321 11 00112222 223332 346788887766665
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-18 Score=167.99 Aligned_cols=148 Identities=23% Similarity=0.309 Sum_probs=125.3
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHH
Q 004726 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (733)
Q Consensus 12 ~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (733)
.+.|++|++++ ++++.+.+.|.++|+.++++ ++++|||+.. |.|+|+... ..++
T Consensus 7 ~~~V~vI~i~g----~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~----------------~~i~- 60 (230)
T 3viv_A 7 KNIVYVAQIKG----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM----------------MNIV- 60 (230)
T ss_dssp CCEEEEEEEES----CBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH----------------HHHH-
T ss_pred CCeEEEEEEeC----EECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH----------------HHHH-
Confidence 46799999985 69999999999999999864 6999999865 667776432 2455
Q ss_pred HHHhcCCCcEEEEe---CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhh---------------hhhccc
Q 004726 92 NLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRL 153 (733)
Q Consensus 92 ~~i~~~~kp~Iaav---~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~---------------~~l~r~ 153 (733)
+.|..+++|||++| +|.|.|+|+.|+++||+|+++++++|+.+++..+. |+.|.+ ..+++.
T Consensus 61 ~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~ 139 (230)
T 3viv_A 61 QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQE 139 (230)
T ss_dssp HHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999 99999999999999999999999999999987532 555543 146777
Q ss_pred cCH--HHHHHHHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 154 VGL--SKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 154 ~G~--~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
.|. ..+.+++.++..++|+||+++||||+|++.
T Consensus 140 ~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~ 174 (230)
T 3viv_A 140 SGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD 174 (230)
T ss_dssp TTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred hCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence 785 789999999999999999999999999964
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=171.11 Aligned_cols=211 Identities=10% Similarity=0.026 Sum_probs=154.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCe-eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
.||+|||+|.||..+|..|++.|++ |++||++++++++..+.+ .+..++++ +.++
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~~ 67 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-----------------------EAEYTTDLAEVNP 67 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-----------------------TCEEESCGGGSCS
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-----------------------CCceeCCHHHHhc
Confidence 4799999999999999999999999 999999998877643210 13334455 5678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCC-----CCCCeeEEecC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA-----HVMPLLEIVRT 461 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~-----~~~~lveiv~~ 461 (733)
+||+||+|+|++ ...++++++.+.++++++|++++++.+.+.+.+.... .-..|+++|. ...+.+.++.
T Consensus 68 ~~Dvvi~av~~~--~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~v- 141 (266)
T 3d1l_A 68 YAKLYIVSLKDS--AFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPH---YGVFYPMQTFSKQREVDFKEIPFFI- 141 (266)
T ss_dssp CCSEEEECCCHH--HHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSS---EEEEEECCCC---CCCCCTTCCEEE-
T ss_pred CCCEEEEecCHH--HHHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHh---ccCcCCceecCCCchhhcCCCeEEE-
Confidence 999999999954 4478888888888899999999998888776554433 2235776642 1223333332
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCC--CCc-----chhhhh--HHHHHHHHHHHHcCCCHHHHHHHH-Hh------c
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--TGF-----AVNRAF--FPYSQSARLLVSLGVDVFRIDSAI-RS------F 525 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--pGf-----i~nRl~--~~~~~Ea~~l~~~Gv~~~dID~a~-~~------~ 525 (733)
..++++.++.+.++++.+|+.++++++. +++ ++|++. ...+.|++. .+.|++++++..++ .. .
T Consensus 142 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl~~~~~~~l~~~~~~~~~~~ 220 (266)
T 3d1l_A 142 EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNLPFDVMLPLIDETARKVHEL 220 (266)
T ss_dssp EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhc
Confidence 2358999999999999999999999754 456 677765 344456633 46699888875544 21 2
Q ss_pred ---CCCccHHHHHHhhchHHHHHHHHH
Q 004726 526 ---GLPIGPFQLLDLAGYGVAAATSKE 549 (733)
Q Consensus 526 ---G~p~Gpf~~~D~~Gld~~~~~~~~ 549 (733)
+.++||++..|..|++.....++.
T Consensus 221 ~~~~~~~GP~~r~d~~~l~~~l~~l~~ 247 (266)
T 3d1l_A 221 EPKTAQTGPAIRYDENVIGNHLRMLAD 247 (266)
T ss_dssp CHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred ChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence 346799999999999988876653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=165.44 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=123.6
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
.++||+|||+|.||.++|..|+++|+ +|++||+++++++.+. +.|.++ ..++++ +
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-----------~~G~~~-----------~~~~~~~~ 89 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAK 89 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCTTG
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------hhcCCHHH
Confidence 45799999999999999999999999 9999999998877642 223211 234454 5
Q ss_pred -ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCC---------
Q 004726 384 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH--------- 451 (733)
Q Consensus 384 -~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~--------- 451 (733)
.+++||+||+||| +....++++++.+.++++++|++.+|+.. +..+.+.+. .+|++.||+.++.
T Consensus 90 ~~~~~aDvVilavp--~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~~ 165 (314)
T 3ggo_A 90 VEDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLD 165 (314)
T ss_dssp GGGGCCSEEEECSC--GGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCCT
T ss_pred HhhccCCEEEEeCC--HHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhhh
Confidence 6899999999999 44567888999999999999988776643 445554443 2899999988654
Q ss_pred ---CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 452 ---VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 452 ---~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
.+..+.+++++.++++.++.+.++++.+|+++++++
T Consensus 166 ~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~ 204 (314)
T 3ggo_A 166 NLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMS 204 (314)
T ss_dssp TTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECC
T ss_pred hhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 345788888888999999999999999999999885
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-17 Score=169.52 Aligned_cols=187 Identities=17% Similarity=0.178 Sum_probs=133.8
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
.|+||+|||+|.||.+||.+|+++||+|++|||++++++... +.| ....+++ +.+
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~a~s~~e~~ 57 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAG-------------ASAARSARDAV 57 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEECSSHHHHH
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HcC-------------CEEcCCHHHHH
Confidence 367999999999999999999999999999999999877642 222 2334444 678
Q ss_pred CCCCEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCCHHHH---hcccCCCCcEEEEecCCCCCCC-------
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLNIV---GEKTSSQDRIIGAHFFSPAHVM------- 453 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~~l---~~~~~~~~~~ig~h~~~p~~~~------- 453 (733)
++||+||.|+|++.++...++.. +.+.++++++|++ +||..+... ++.+... |+||.+.|..+
T Consensus 58 ~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId-~sT~~p~~~~~~a~~~~~~----G~~~lDaPVsGg~~~A~~ 132 (300)
T 3obb_A 58 QGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARER----GLAMLDAPVSGGTAGAAA 132 (300)
T ss_dssp TTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEE-CSCCCHHHHHHHHHHHHTT----TCEEEECCEESCHHHHHH
T ss_pred hcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEecCCCCCHHHHHh
Confidence 99999999999777776665542 6667788888864 555555533 3333221 56666555332
Q ss_pred -CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----chhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 454 -PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 454 -~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGf-----i~nRl~~----~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+.-++.| +++++++++++++.+|++++++++ +|- ++|.++. ..+.|++.+.+. |++++.+-.++
T Consensus 133 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~-~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl 208 (300)
T 3obb_A 133 GTLTFMVGG---DAEALEKARPLFEAMGRNIFHAGP-DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIM 208 (300)
T ss_dssp TCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 33444455 799999999999999999999987 342 3344432 335699998876 89999999888
Q ss_pred -HhcC
Q 004726 523 -RSFG 526 (733)
Q Consensus 523 -~~~G 526 (733)
.+.+
T Consensus 209 ~~~~~ 213 (300)
T 3obb_A 209 RRSSG 213 (300)
T ss_dssp HTSTT
T ss_pred HhCcc
Confidence 4443
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=164.03 Aligned_cols=188 Identities=16% Similarity=0.175 Sum_probs=142.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC----eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
+||+|||+|.||.++|..|+++|+ +|++||++++++++..+.. .+..+++. +
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~-----------------------g~~~~~~~~e 59 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY-----------------------GLTTTTDNNE 59 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH-----------------------CCEECSCHHH
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh-----------------------CCEEeCChHH
Confidence 589999999999999999999998 9999999999877653210 23334444 5
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCC-eeEEecCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTE 462 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-lveiv~~~ 462 (733)
.+++||+||+|+| ++...++++++.+.++++++|+|.++++++..+.+.+....++++.||+.|..... ...+++++
T Consensus 60 ~~~~aDvVilav~--~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~ 137 (247)
T 3gt0_A 60 VAKNADILILSIK--PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNE 137 (247)
T ss_dssp HHHHCSEEEECSC--TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECT
T ss_pred HHHhCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCC
Confidence 6789999999997 66778888999888899999999999999998888777677899999999988776 66777888
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcCCC-----Ccchh-hhhHHHHHHHHHH--HHcCCCHHHHHHHH
Q 004726 463 RTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVN-RAFFPYSQSARLL--VSLGVDVFRIDSAI 522 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d~p-----Gfi~n-Rl~~~~~~Ea~~l--~~~Gv~~~dID~a~ 522 (733)
.++++.++.++++++.+|+ ++++.+.. +.... ..+...+.|++.. .+.|+++++..+++
T Consensus 138 ~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~ 204 (247)
T 3gt0_A 138 MVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFA 204 (247)
T ss_dssp TCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999998 55554311 00000 0112233455443 46689998888877
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-16 Score=167.58 Aligned_cols=96 Identities=25% Similarity=0.340 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHh-CC-CCCCC
Q 004726 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLY-GN-FFKPS 697 (733)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~-~~-~~~p~ 697 (733)
++++.||++.+++||+++++++|++ ++++||.++..|+|||+ |||+++|.+|+|.++++++.+++.+ ++ +|.|+
T Consensus 203 ~g~i~nr~l~~~~~Ea~~l~~~g~~-~~~~id~~~~~g~g~p~---GP~~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~ 278 (302)
T 1f0y_A 203 PGFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPS 278 (302)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcC
Confidence 4688999999999999999999998 89999999999999996 9999999999999999999999888 77 59999
Q ss_pred HHHHHHHHCCCCc--cccceeecC
Q 004726 698 RFLEERATKGIPL--VRIIFHRFS 719 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y~ 719 (733)
++|++|+++|++| +|+|||+|+
T Consensus 279 ~~l~~~~~~g~~G~k~g~Gfy~y~ 302 (302)
T 1f0y_A 279 PSLNKLVAENKFGKKTGEGFYKYK 302 (302)
T ss_dssp HHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred HHHHHHHHcCCCccccCcEeeeCC
Confidence 9999999999999 899999994
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=168.53 Aligned_cols=190 Identities=13% Similarity=0.109 Sum_probs=134.7
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
..|+||+|||+|.||.+||..|+++|++|++||+++++++...+ . .+..++++ +.
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~~~~~~ 74 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE-----------H-------------GASVCESPAEV 74 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T-------------TCEECSSHHHH
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCeEcCCHHHH
Confidence 45679999999999999999999999999999999998776421 1 23344555 66
Q ss_pred cCCCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCHHH---HhcccC-CCCcEEEEecCCCC----CCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFSPA----HVMP 454 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~-~~~~~ig~h~~~p~----~~~~ 454 (733)
+++||+||+|||++..++..++ +++.+.++++++|++. |+..+.. +.+.+. ....|+. ||.... ....
T Consensus 75 ~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~-st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~ 152 (310)
T 3doj_A 75 IKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDM-STVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQ 152 (310)
T ss_dssp HHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTC
T ss_pred HHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCC
Confidence 7899999999997666665444 5677788889888654 4444432 222222 2223443 332111 1123
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------cchhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH-H
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-R 523 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG------fi~nRl~---~~~~~Ea~~l~~~-Gv~~~dID~a~-~ 523 (733)
+..++.+ ++++++.+.++++.+|+.++++++ +| ++.|.++ .+.++|++.+.+. |++++++..++ .
T Consensus 153 l~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~ 228 (310)
T 3doj_A 153 LIILAAG---DKALFEESIPAFDVLGKRSFYLGQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDL 228 (310)
T ss_dssp EEEEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred eEEEEcC---CHHHHHHHHHHHHHhCCCEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3445555 689999999999999999999987 66 4556553 3557899998876 89999999998 4
Q ss_pred hc
Q 004726 524 SF 525 (733)
Q Consensus 524 ~~ 525 (733)
+.
T Consensus 229 ~~ 230 (310)
T 3doj_A 229 GA 230 (310)
T ss_dssp ST
T ss_pred cc
Confidence 43
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-16 Score=167.37 Aligned_cols=185 Identities=14% Similarity=0.093 Sum_probs=127.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.+||.+|+++||+|++||+++++.+.. .+.| ....+++ +.+++
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G-------------~~~~~s~~e~~~~ 61 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPL-----------TKLG-------------ATVVENAIDAITP 61 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTT-----------TTTT-------------CEECSSGGGGCCT
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHcC-------------CeEeCCHHHHHhc
Confidence 489999999999999999999999999999999886653 2222 2334444 77899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh---cccCCCCcEEEEecCCCCCCC--------Cee
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG---EKTSSQDRIIGAHFFSPAHVM--------PLL 456 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~---~~~~~~~~~ig~h~~~p~~~~--------~lv 456 (733)
||+||.|+|.+..+...+...+...++++.++++ +||..+.... +.+... |.+|.+.|..+ .+.
T Consensus 62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid-~sT~~p~~~~~~~~~~~~~----g~~~ldapVsGg~~~a~~g~l~ 136 (297)
T 4gbj_A 62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVS-MSTISPETSRQLAQVHEWY----GAHYVGAPIFARPEAVRAKVGN 136 (297)
T ss_dssp TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEE-CSCCCHHHHHHHHHHHHHT----TCEEEECCEECCHHHHHHTCCE
T ss_pred CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEE-CCCCChHHHHHHHHHHHhc----CCceecCCcCCCccccccccce
Confidence 9999999998777777666778888889888764 4555555332 222211 34554434222 222
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----chhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI-RSF 525 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGf-----i~nRl~----~~~~~Ea~~l~~~-Gv~~~dID~a~-~~~ 525 (733)
-++.+ +++++++++++++.+|+.++++++.+|- ++|.++ ...+.|++.+.+. |++++++-.++ .+.
T Consensus 137 im~gG---~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~ 213 (297)
T 4gbj_A 137 ICLSG---NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTL 213 (297)
T ss_dssp EEEEE---CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred eeccc---chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 23333 7899999999999999999999876762 334443 3445799998866 99999998888 444
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-16 Score=166.18 Aligned_cols=188 Identities=13% Similarity=0.068 Sum_probs=125.5
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC--hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~--~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
+.++||+|||+|.||.+||..|+++|+ +|++||++ +++.+... +. .+..+++.
T Consensus 22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~-------------g~~~~~~~ 77 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-----------EL-------------GVSCKASV 77 (312)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-----------HT-------------TCEECSCH
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-----------HC-------------CCEEeCCH
Confidence 346799999999999999999999999 99999997 45544321 11 23344454
Q ss_pred -cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccC-C--CCcEEEEecCCCC--CCCC
Q 004726 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-S--QDRIIGAHFFSPA--HVMP 454 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~--~~~~ig~h~~~p~--~~~~ 454 (733)
+.+++||+||+|||++... +++.++.+.++++++|++.+|..+.. .+.+.+. . ..+|+....+.|+ ....
T Consensus 78 ~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~~g~ 155 (312)
T 3qsg_A 78 AEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHR 155 (312)
T ss_dssp HHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTTGGG
T ss_pred HHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhhcCC
Confidence 6688999999999977665 46788989999999887665544433 2222221 1 2234332112211 1225
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----chhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH-H
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-R 523 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGf-----i~nRl~~----~~~~Ea~~l~~~-Gv~~~dID~a~-~ 523 (733)
+..++.++.+ +.++++++.+|+.++++++.+|. ++|..+. ..++|++.+.+. |++++-++ ++ .
T Consensus 156 l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~-~l~~ 229 (312)
T 3qsg_A 156 VPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLA-SLDA 229 (312)
T ss_dssp SEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHH
T ss_pred EEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHh
Confidence 6667777532 88999999999999999876663 3344433 567899988876 89885444 55 4
Q ss_pred hc
Q 004726 524 SF 525 (733)
Q Consensus 524 ~~ 525 (733)
+.
T Consensus 230 ~~ 231 (312)
T 3qsg_A 230 SF 231 (312)
T ss_dssp HS
T ss_pred cC
Confidence 43
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-16 Score=162.79 Aligned_cols=184 Identities=18% Similarity=0.169 Sum_probs=130.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.++|..|+++|++|++||+++++++...+ . .+..++++ +.++
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~- 70 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE-----------A-------------GATLADSVADVAA- 70 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH-----------T-------------TCEECSSHHHHTT-
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCEEcCCHHHHHh-
Confidence 48999999999999999999999999999999998776422 1 24445566 5567
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecCCCC---CCCCeeEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRT 461 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~~p~---~~~~lveiv~~ 461 (733)
||+||+|||++..++ .+++++.+.++++++|++.+++.+.. .+.+.+. ....|+....+.++ ....+..++.+
T Consensus 71 aDvvi~~vp~~~~~~-~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg 149 (296)
T 3qha_A 71 ADLIHITVLDDAQVR-EVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGA 149 (296)
T ss_dssp SSEEEECCSSHHHHH-HHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEEC
T ss_pred CCEEEEECCChHHHH-HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecC
Confidence 999999999765554 45588888888999887544433322 2333332 22234332111111 12234445555
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------cchhhhh---HHHHHHHHHHHHc-CCCHHHH------HHHH
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRI------DSAI 522 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG------fi~nRl~---~~~~~Ea~~l~~~-Gv~~~dI------D~a~ 522 (733)
+++++++++++++.+|++++++++ +| ++.|.+. ...++|++.+.+. |++++++ ..++
T Consensus 150 ---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i 222 (296)
T 3qha_A 150 ---DREVYERIKPAFKHWAAVVIHAGE-PGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDAL 222 (296)
T ss_dssp ---CHHHHHHHHHHHHHHEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHcCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHH
Confidence 689999999999999999999987 56 4556553 3457899998876 8999999 7777
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=158.52 Aligned_cols=189 Identities=14% Similarity=0.130 Sum_probs=132.7
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
.+||+|||+|.||.++|..|+++|++|++||+++++++...+ .| ....++++ +.++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g------------~~~~~~~~~e~~~ 63 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA-----------EG------------ACGAAASAREFAG 63 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT------------CSEEESSSTTTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cC------------CccccCCHHHHHh
Confidence 358999999999999999999999999999999998776422 12 12213444 6789
Q ss_pred CCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCHH---HHhcccC-CCCcEEEEecCCCC----CCCCee
Q 004726 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA----HVMPLL 456 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~~~ig~h~~~p~----~~~~lv 456 (733)
+||+||+|||++..++..++ +++.+.++++++|++. |+..+. .+.+.+. ....|+. ||.... ....++
T Consensus 64 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~ 141 (303)
T 3g0o_A 64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVS-STISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMT 141 (303)
T ss_dssp TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEEC-SCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEE
T ss_pred cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEec-CCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeE
Confidence 99999999997666655444 5677888899888654 444443 2333332 2234444 442211 112334
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------cchhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RS 524 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG------fi~nRl~---~~~~~Ea~~l~~~-Gv~~~dID~a~-~~ 524 (733)
.++.+ ++++++.++++++.+|+.++++++.+| ++.|.+. .+.++|++.+.+. |++++++..++ .+
T Consensus 142 ~~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~ 217 (303)
T 3g0o_A 142 VMASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHA 217 (303)
T ss_dssp EEEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTS
T ss_pred EEeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 44444 689999999999999999999987566 2334432 3457899988866 89999999998 43
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-16 Score=165.50 Aligned_cols=97 Identities=24% Similarity=0.300 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCHHH
Q 004726 622 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFL 700 (733)
Q Consensus 622 ~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~~~l 700 (733)
+++||++.++++||+.++++|+ ++++||.++..|+|+|++..|||+++|.+|+|.++++++.+++.+++ +|.|+++|
T Consensus 174 fi~Nrll~~~~~EA~~l~~~Gv--~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~l 251 (293)
T 1zej_A 174 SLVNRFNAAVLSEASRMIEEGV--RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEKFKPPEWL 251 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCHHH
Confidence 8999999999999999999999 69999999999999998788999999999999999999999999887 89999999
Q ss_pred HHHHHCCCCc--cccceeecCC
Q 004726 701 EERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 701 ~~~~~~g~~g--~g~gfy~y~~ 720 (733)
++|+++|++| +|+|||+|++
T Consensus 252 ~~~v~~G~lG~Ktg~Gfy~y~~ 273 (293)
T 1zej_A 252 QEKIKKGEVGVKAGKGIYEYGP 273 (293)
T ss_dssp HHHHHTTCCBGGGTBSSSBCCT
T ss_pred HHHHHCCCCccccCCEeeecCc
Confidence 9999999999 8999999975
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-16 Score=162.13 Aligned_cols=187 Identities=15% Similarity=0.105 Sum_probs=132.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.++|..|+++|++|++||+++++++...+ . .+..++++ +.+++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~ 57 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------L-------------GAERAATPCEVVES 57 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T-------------TCEECSSHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHhc
Confidence 47999999999999999999999999999999998776422 1 23445555 56789
Q ss_pred CCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCHHH---HhcccC-CCCcEEEEecCCCCC----CCCeeE
Q 004726 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFSPAH----VMPLLE 457 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~-~~~~~ig~h~~~p~~----~~~lve 457 (733)
||+||+|+|++..++..++ +++.+.++++++|++. |+..+.. +.+.+. ....|+. ||..... ...++.
T Consensus 58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~ 135 (287)
T 3pef_A 58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLII 135 (287)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEE
T ss_pred CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEE
Confidence 9999999997666665554 6788889899888654 4544443 222222 2234444 4322111 123344
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------cchhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSF 525 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG------fi~nRl~---~~~~~Ea~~l~~~-Gv~~~dID~a~-~~~ 525 (733)
++.+ ++++++.++++++.+|++++++++ +| ++.|-+. ...++|++.+.+. |++++++..++ .+.
T Consensus 136 ~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~ 210 (287)
T 3pef_A 136 LAAG---DRNLYDEAMPGFEKMGKKIIHLGD-VGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGA 210 (287)
T ss_dssp EEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred EEeC---CHHHHHHHHHHHHHhCCCeEEeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 5544 689999999999999999999976 55 2334332 3467899998866 89999999998 443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-16 Score=166.13 Aligned_cols=189 Identities=14% Similarity=0.111 Sum_probs=130.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
|+||+|||+|.||.++|..|+++|++|++||+++++++...+ . .+..+++. +.++
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~ 56 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA-----------L-------------GARQASSPAEVCA 56 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH-----------H-------------TCEECSCHHHHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHH
Confidence 358999999999999999999999999999999998776432 1 23344555 5678
Q ss_pred CCCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCHHH---HhcccC-CCCcEEEEecCCCCC---CCCeeE
Q 004726 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFSPAH---VMPLLE 457 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~-~~~~~ig~h~~~p~~---~~~lve 457 (733)
+||+||+|+|++..++..++ +++.+.++++++|++. |+..+.. +.+.+. ...+|+....+.++. ...+..
T Consensus 57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~-st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~ 135 (287)
T 3pdu_A 57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDM-STVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLII 135 (287)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEE
T ss_pred cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEEC-CCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEE
Confidence 99999999997666655544 5677788888887654 4444432 222222 222333321111110 112233
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------cchhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSF 525 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG------fi~nRl~---~~~~~Ea~~l~~~-Gv~~~dID~a~-~~~ 525 (733)
++.+ +++++++++++++.+|++++++++ +| ++.|.+. ...++|++.+.+. |++++++..++ .+.
T Consensus 136 ~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 210 (287)
T 3pdu_A 136 LAAG---DQSLFTDAGPAFAALGKKCLHLGE-VGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGA 210 (287)
T ss_dssp EEEE---CHHHHHHTHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred EEeC---CHHHHHHHHHHHHHhCCCEEEcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 3333 689999999999999999999987 55 3345443 3457899988866 89999999998 543
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-16 Score=159.67 Aligned_cols=210 Identities=10% Similarity=-0.033 Sum_probs=137.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
.||+|||+|.||.+||..|+++ ++| .+||++++++++..+. .+. .++++ +.++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~----------------------~g~--~~~~~~~~~~ 57 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEV----------------------YGG--KAATLEKHPE 57 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHH----------------------TCC--CCCSSCCCCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHH----------------------cCC--ccCCHHHHHh
Confidence 4799999999999999999988 999 5999999887664221 112 33444 4578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEec----CCCCCC-CCeeEEecC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF----FSPAHV-MPLLEIVRT 461 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~----~~p~~~-~~lveiv~~ 461 (733)
+||+||+|+|++. ..+++.++. +++++|++.+++.+.+.+... .+.+.|+ .+++.. ....++...
T Consensus 58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~ 127 (276)
T 2i76_A 58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG 127 (276)
T ss_dssp ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence 9999999999654 556666654 577888765556676655433 4566774 332221 112222222
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCC--C------CcchhhhhHHHHHHHHHHHH-cCCCHH----------HHHHHH
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--T------GFAVNRAFFPYSQSARLLVS-LGVDVF----------RIDSAI 522 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--p------Gfi~nRl~~~~~~Ea~~l~~-~Gv~~~----------dID~a~ 522 (733)
-.++++.++.++++++.+|+.++++++. + ++..| ++..++.++..++. .|++.+ .++.++
T Consensus 128 ~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n-~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~~~ 206 (276)
T 2i76_A 128 LEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASN-FPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIK 206 (276)
T ss_dssp ECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHT-THHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred EEeChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 2235667999999999999999988742 1 34444 55567788877777 588544 566666
Q ss_pred -Hh-cCCCccHHHHHHhhchHHHHHHHHHHHHhC
Q 004726 523 -RS-FGLPIGPFQLLDLAGYGVAAATSKEFDKAF 554 (733)
Q Consensus 523 -~~-~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~ 554 (733)
.+ .+.++||++..|..+++...+.++.+.+++
T Consensus 207 ~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~ 240 (276)
T 2i76_A 207 KMRVECSLTGPVKRGDWQVVEEERREYEKIFGNT 240 (276)
T ss_dssp HSCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred hcChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence 33 556789999999999999999998875544
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=160.15 Aligned_cols=189 Identities=14% Similarity=0.122 Sum_probs=129.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++||+|||+|.||.++|..|+++|++|++||+++++++...+ . .+..++++ +.++
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~~~~e~~~ 86 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA-----------L-------------GATIHEQARAAAR 86 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------T-------------TCEEESSHHHHHT
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------C-------------CCEeeCCHHHHHh
Confidence 468999999999999999999999999999999998776421 1 23445555 6688
Q ss_pred CCCEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecCCCC---CCCCeeEEe
Q 004726 387 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~~p~---~~~~lveiv 459 (733)
+||+||+|||++..++..+.. ++.+.++++++|++.+++.+.. .+.+.+. ....|+....+.++ ..+.+..++
T Consensus 87 ~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~ 166 (320)
T 4dll_A 87 DADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMA 166 (320)
T ss_dssp TCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEE
T ss_pred cCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEe
Confidence 999999999976665544432 5667788888876544433322 2223222 22233332111111 112344455
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------cchhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSF 525 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG------fi~nRl~---~~~~~Ea~~l~~~-Gv~~~dID~a~-~~~ 525 (733)
.+ ++++++.++++++.+ +.++++++ +| ++.|-+. .+.++|++.+.+. |++++++..++ .+.
T Consensus 167 gg---~~~~~~~~~~ll~~~-~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~ 238 (320)
T 4dll_A 167 GG---KPADFERSLPLLKVF-GRATHVGP-HGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGF 238 (320)
T ss_dssp ES---CHHHHHHHHHHHHHH-EEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTST
T ss_pred CC---CHHHHHHHHHHHHhc-CCEEEeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccc
Confidence 54 689999999999999 88999976 45 3334433 3457899998876 89999999998 444
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=149.57 Aligned_cols=158 Identities=9% Similarity=0.017 Sum_probs=123.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
.+||+|||+|.||+++|..|.++|++|++||+. +.+++
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~~ 43 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIRD 43 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGGG
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhcc
Confidence 358999999999999999999999999999982 12467
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHH
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQ 467 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e 467 (733)
|| |.|||.+ ....+++++.+.++++++|++.+++.+...+........+|++.||.... ..++... +++
T Consensus 44 aD--ilavP~~--ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~-----~~~i~a~--d~~ 112 (232)
T 3dfu_A 44 FE--LVVIDAH--GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD-----RWVASAL--DEL 112 (232)
T ss_dssp CS--EEEECSS--CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT-----EEEEEES--SHH
T ss_pred CC--EEEEcHH--HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC-----ceeeeCC--CHH
Confidence 88 9999965 55678889988899999988766555555454444556789999987432 1233322 788
Q ss_pred HHHHHHHHHHHcCCeeEEEc--CCCCc----chhhhhHHHHHHHHHHH---HcCC-CHHHH
Q 004726 468 VILDLMTVGKIIKKVPVVVG--NCTGF----AVNRAFFPYSQSARLLV---SLGV-DVFRI 518 (733)
Q Consensus 468 ~~~~~~~l~~~lG~~~v~v~--d~pGf----i~nRl~~~~~~Ea~~l~---~~Gv-~~~dI 518 (733)
.++.++++++.+|.+++.+. +.++| ..++.+.++.++|..++ ++|+ +++|+
T Consensus 113 a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d~ 173 (232)
T 3dfu_A 113 GETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSDI 173 (232)
T ss_dssp HHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Confidence 99999999999999999995 45566 44667788899999999 8897 88883
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-16 Score=162.20 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=84.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCH
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 698 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~ 698 (733)
.+++++||++.++++||++++++|++ +|++||.++..|+|+|+ |||+++|.+|+|+.++++++ ....+++.|++
T Consensus 188 ~~g~i~nr~~~~~~~ea~~l~~~g~~-~~~~id~~~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~--~~~~~~~~~~~ 261 (283)
T 4e12_A 188 KAGYVLNSLLVPLLDAAAELLVDGIA-DPETIDKTWRIGTGAPK---GPFEIFDIVGLTTAYNISSV--SGPKQREFAAY 261 (283)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHT--SCHHHHHHHHH
T ss_pred CCCEEehHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---CHHHHHHhccHHHHHHHHhc--cccCcccCchH
Confidence 46789999999999999999999998 89999999999999999 99999999999999998873 11112467888
Q ss_pred HHHHHHHCCCCc--cccceeec
Q 004726 699 FLEERATKGIPL--VRIIFHRF 718 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y 718 (733)
++++|+++|++| +|+|||+|
T Consensus 262 ~~~~~v~~g~lG~k~g~Gfy~y 283 (283)
T 4e12_A 262 LKENYIDKGKLGLATGEGFYRY 283 (283)
T ss_dssp HHHHTGGGTCCBGGGTBSSSBC
T ss_pred HHHHHHHCCCCceeCCeEeecC
Confidence 999999999999 89999999
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=149.10 Aligned_cols=188 Identities=13% Similarity=0.016 Sum_probs=133.1
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
|+||+|||+ |.||.++|..|+++|++|++||+++++++...+ .| +..++..+.++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~~~~ 66 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG-------------IPLTDGDGWID 66 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT-------------CCCCCSSGGGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC-------------CCcCCHHHHhc
Confidence 468999999 999999999999999999999999988765421 12 22233336788
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCC--------CCCe---
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH--------VMPL--- 455 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~--------~~~l--- 455 (733)
+||+||+|+| .....++++++.+.++++++|++.+++.++..+.+ .....++++.||+.|.. ....
T Consensus 67 ~aDvVi~av~--~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~ 143 (286)
T 3c24_A 67 EADVVVLALP--DNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHG 143 (286)
T ss_dssp TCSEEEECSC--HHHHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSS
T ss_pred CCCEEEEcCC--chHHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCccc
Confidence 9999999999 45578888999888999999988666666665554 33345799999988765 2222
Q ss_pred -----eEEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCC-CC----cchhhhhHHH---HHHHHHH-HHc-CCCHHH
Q 004726 456 -----LEIVRTERTSAQVILDLMTVGKIIKK---VPVVVGNC-TG----FAVNRAFFPY---SQSARLL-VSL-GVDVFR 517 (733)
Q Consensus 456 -----veiv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d~-pG----fi~nRl~~~~---~~Ea~~l-~~~-Gv~~~d 517 (733)
..++.+..++++.++.+.++++.+|. +++++++. .+ .+.|-...++ +.|++.. ... |+++++
T Consensus 144 ~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~ 223 (286)
T 3c24_A 144 GIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQA 223 (286)
T ss_dssp SSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred ccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 23333334688999999999999999 78888531 11 2234333332 2344433 333 888887
Q ss_pred HHHHH
Q 004726 518 IDSAI 522 (733)
Q Consensus 518 ID~a~ 522 (733)
+-.++
T Consensus 224 ~~~~~ 228 (286)
T 3c24_A 224 ALDFM 228 (286)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=150.07 Aligned_cols=187 Identities=13% Similarity=0.068 Sum_probs=134.2
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC----CeeEEEeCChH--HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (733)
++||+|||+|.||.+||..|+++| ++|++||++++ +++... +.| +..+++
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-----------~~G-------------~~~~~~ 77 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-----------KMG-------------VKLTPH 77 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-----------HHT-------------CEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-----------HcC-------------CEEeCC
Confidence 347999999999999999999999 89999999986 555431 112 333434
Q ss_pred c-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCC---CCcEEEEecCCCCCCCCeeE
Q 004726 382 Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS---QDRIIGAHFFSPAHVMPLLE 457 (733)
Q Consensus 382 ~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~---~~~~ig~h~~~p~~~~~lve 457 (733)
. +.+++||+||+||| +....+++.++.+.++++++|++.++++++..+.+.+.. ..++++.|+..|........
T Consensus 78 ~~e~~~~aDvVilav~--~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~ 155 (322)
T 2izz_A 78 NKETVQHSDVLFLAVK--PHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGAT 155 (322)
T ss_dssp HHHHHHHCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEE
T ss_pred hHHHhccCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeE
Confidence 4 56788999999999 667778888998888889999888888888776665532 45799999988887665555
Q ss_pred Ee-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-------CCcchhhhhHHHHHHHHH--HHHcCCCHHHHHHHH
Q 004726 458 IV-RTERTSAQVILDLMTVGKIIKKVPVVVGNC-------TGFAVNRAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (733)
Q Consensus 458 iv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-------pGfi~nRl~~~~~~Ea~~--l~~~Gv~~~dID~a~ 522 (733)
++ .++.++++.++.+.++++.+|..+++..+. .| ..+.+++.+ .|++. ....|+++++.-.++
T Consensus 156 v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g-~gpa~~~~~-~eala~a~~~~Gl~~~~a~~l~ 228 (322)
T 2izz_A 156 VYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSG-SGPAYAFTA-LDALADGGVKMGLPRRLAVRLG 228 (322)
T ss_dssp EEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHTT-THHHHHHHH-HHHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhc-CHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHH
Confidence 54 577778999999999999999765543221 11 112222222 33333 345588887766555
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=162.02 Aligned_cols=204 Identities=13% Similarity=0.088 Sum_probs=142.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHH--HhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~l 385 (733)
.||+|||+|.||.++|..|+++|++|++||+++++++...+.... ..+.| + .+...+ ..+++.+++++ +++
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~----i~e~g-l-~~~l~~~~~~~~l~~ttd~~~a~ 82 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVP----IHEPG-L-KEVIARNRSAGRLRFSTDIEAAV 82 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCS----SCCTT-H-HHHHHHHHHTTCEEEECCHHHHH
T ss_pred ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCC----cCCCC-H-HHHHHHhcccCCEEEECCHHHHh
Confidence 489999999999999999999999999999999988775321000 00000 0 000010 12467888888 578
Q ss_pred CCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH---HhcccC----CC---CcEEEEecC
Q 004726 386 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTS----SQ---DRIIGAHFF 447 (733)
Q Consensus 386 ~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~----~~---~~~ig~h~~ 447 (733)
++||+||+|||. |+....++++++.+.++++++|+ +.||+++.. +.+.+. .+ ..+ .+.+
T Consensus 83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV-~~STv~~gt~~~l~~~l~~~~~~g~~~~~~--~v~~ 159 (478)
T 2y0c_A 83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIV-DKSTVPVGTAERVRAAVAEELAKRGGDQMF--SVVS 159 (478)
T ss_dssp HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEE-ECSCCCTTHHHHHHHHHHHHHHHTTCCCCE--EEEE
T ss_pred hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEE-EeCCcCCCchHHHHHHHHHHhcCCCCCccE--EEEE
Confidence 999999999997 44888899999999999999885 456765532 221111 11 222 2355
Q ss_pred CCCCCCCee---------EEecCCCCCH----HHHHHHHHHHHHcCC--eeEEEcC-----CCCcchhhhh---HHHHHH
Q 004726 448 SPAHVMPLL---------EIVRTERTSA----QVILDLMTVGKIIKK--VPVVVGN-----CTGFAVNRAF---FPYSQS 504 (733)
Q Consensus 448 ~p~~~~~lv---------eiv~~~~t~~----e~~~~~~~l~~~lG~--~~v~v~d-----~pGfi~nRl~---~~~~~E 504 (733)
+|....+.. .++.|.. ++ +..+.+.++++.+++ .++++.+ ..+++.|.+. .+++||
T Consensus 160 ~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE 238 (478)
T 2y0c_A 160 NPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNE 238 (478)
T ss_dssp CCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555543 3555543 34 789999999998875 5777654 4467778765 578899
Q ss_pred HHHHHHc-CCCHHHHHHHH
Q 004726 505 ARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 505 a~~l~~~-Gv~~~dID~a~ 522 (733)
+..+.+. |++++++..++
T Consensus 239 ~~~la~~~Gid~~~v~~~i 257 (478)
T 2y0c_A 239 LANLADRFGADIEAVRRGI 257 (478)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 9998877 89999999887
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=159.23 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHHHHHHHHHh-hcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVL-EEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l-~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~ 697 (733)
+++||+||++.++++||+.++ ++| + ++++||.++. ++|||+ |||+++|.+|+|+.+++.+.+ .+.|+
T Consensus 232 ~pGfi~Nril~~~~~EA~~l~~~~G-a-~~e~ID~a~~-~~G~pm---GPf~l~D~vGlD~~~~i~~~~------~~~~~ 299 (460)
T 3k6j_A 232 CKSFVFNRLLHVYFDQSQKLMYEYG-Y-LPHQIDKIIT-NFGFLM---GPMTVADMNGFDVMEKLKKEN------GLEPN 299 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTSC-C-CHHHHHHHHH-HHTBSS---CHHHHHHHHCTHHHHHHHHHS------CCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHh------ccCch
Confidence 579999999999999999999 778 5 7999999987 999999 999999999999999988755 24567
Q ss_pred HHHHHHHHCCCCc--cccceeecCCC
Q 004726 698 RFLEERATKGIPL--VRIIFHRFSNI 721 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y~~~ 721 (733)
+++++|+++|++| +|+|||+|++.
T Consensus 300 ~~l~~~v~~G~lG~KtG~GFY~y~~~ 325 (460)
T 3k6j_A 300 PIEKEMWRLKRYGRKTNKGFYKYDDK 325 (460)
T ss_dssp HHHHHHHHTTCCBGGGTBSSSEECTT
T ss_pred HHHHHHHHCCCCeeecCCEEEECCCC
Confidence 9999999999999 89999999853
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=152.39 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=115.0
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc-
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l- 385 (733)
++||+|||+|.||++||..|.++|++|++||++++.++.+.+ .| +..++++ +.+
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~G-------------~~~~~~~~e~~~ 63 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD-----------EG-------------FDVSADLEATLQ 63 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH-----------TT-------------CCEESCHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeeeCCHHHHHH
Confidence 568999999999999999999999999999999998776421 22 1223333 333
Q ss_pred ---CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCCC--------
Q 004726 386 ---KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV-------- 452 (733)
Q Consensus 386 ---~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~~-------- 452 (733)
++||+||+||| +.....+++++.+. +++++|++.+|+.. +..+.+... ..+|++.||+..+..
T Consensus 64 ~a~~~aDlVilavP--~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~~ 139 (341)
T 3ktd_A 64 RAAAEDALIVLAVP--MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASMD 139 (341)
T ss_dssp HHHHTTCEEEECSC--HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCCS
T ss_pred hcccCCCEEEEeCC--HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhhh
Confidence 35799999999 67788899999887 78888876555432 234444332 468999999876541
Q ss_pred ----CCeeEEecCCCCCHH--------HHHHHHHHHHHcCCeeEEEc
Q 004726 453 ----MPLLEIVRTERTSAQ--------VILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 453 ----~~lveiv~~~~t~~e--------~~~~~~~l~~~lG~~~v~v~ 487 (733)
+..+.+++++.++++ .++.+.++++.+|.+++.+.
T Consensus 140 ~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~ 186 (341)
T 3ktd_A 140 GLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSR 186 (341)
T ss_dssp STTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeC
Confidence 224667788878888 99999999999999999885
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-14 Score=150.00 Aligned_cols=186 Identities=11% Similarity=0.041 Sum_probs=127.6
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++||+|||+|.||.+||..|+++|++|++||+++++++...+ .| +...+++ +.++
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~ 64 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA-----------AG-------------AHLCESVKAALS 64 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HT-------------CEECSSHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHh
Confidence 468999999999999999999999999999999998776422 12 2334444 5678
Q ss_pred CCCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecCCC-CCC--CCeeEE
Q 004726 387 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSP-AHV--MPLLEI 458 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~~p-~~~--~~lvei 458 (733)
+||+||+|+|++..++..+ . .+... .++++|++.+++.+.. .+.+.+. ...+|+....+.+ +.. ..++.+
T Consensus 65 ~aDvVi~~vp~~~~~~~v~-~~~~l~~~-~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~ 142 (306)
T 3l6d_A 65 ASPATIFVLLDNHATHEVL-GMPGVARA-LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSI 142 (306)
T ss_dssp HSSEEEECCSSHHHHHHHH-TSTTHHHH-TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEE
T ss_pred cCCEEEEEeCCHHHHHHHh-cccchhhc-cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEE
Confidence 9999999999766555444 4 45544 5777776544333322 3333332 3345665433221 111 123334
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEE--cC--CCCcchhhhh---HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKVPVVV--GN--CTGFAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v--~d--~pGfi~nRl~---~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
+.+ +++++++++++++.+|++++++ ++ ..|..++-++ ...++|++.+.+. |++++++..++
T Consensus 143 ~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~ 211 (306)
T 3l6d_A 143 HTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLL 211 (306)
T ss_dssp EEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred EcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 444 6999999999999998899999 75 4556776332 3456799988866 89999999888
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=144.25 Aligned_cols=192 Identities=12% Similarity=0.070 Sum_probs=126.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-cCcccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~l 385 (733)
++||+|||+|.||.++|..|+++| ++|++||++++..+++.+.. +...+.| + .+ +..+.+
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~----~~~~~~g-------------~-~~~s~~e~~ 85 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALR----ARAAELG-------------V-EPLDDVAGI 85 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHH----HHHHHTT-------------C-EEESSGGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHH----HHHHHCC-------------C-CCCCHHHHH
Confidence 358999999999999999999999 99999999984222111111 1111222 2 23 334778
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHhcccC-CCCcEEEEecCCCC--CCCCeeEEe
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA--HVMPLLEIV 459 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~~~ig~h~~~p~--~~~~lveiv 459 (733)
++||+||+|||++... +.+.++.+.++++++|++.+ +..+. .+.+.+. ...+|+......|. ....+..++
T Consensus 86 ~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~~s-t~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~v 162 (317)
T 4ezb_A 86 ACADVVLSLVVGAATK--AVAASAAPHLSDEAVFIDLN-SVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILV 162 (317)
T ss_dssp GGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEECC-SCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEE
T ss_pred hcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEE
Confidence 9999999999966655 34578888899999887655 44433 2333332 22345543223322 233455566
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc------chhhh---hHHHHHHHHHHHHc-CCCHHHHHHHHHhc
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF------AVNRA---FFPYSQSARLLVSL-GVDVFRIDSAIRSF 525 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGf------i~nRl---~~~~~~Ea~~l~~~-Gv~~~dID~a~~~~ 525 (733)
.++. + +.++++++.+|+.++++++.+|- +.|-+ ..+.++|++.+.+. |++++.++.+..+.
T Consensus 163 gg~~---~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~ 233 (317)
T 4ezb_A 163 AGRR---A--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETF 233 (317)
T ss_dssp ESTT---H--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred eCCh---H--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 6643 2 78999999999999999986662 33422 35667899998876 89997666555443
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-14 Score=155.86 Aligned_cols=206 Identities=17% Similarity=0.121 Sum_probs=137.2
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHC-CC-eeEEEeCChH----HHHHHHHHH------HHHHHHhHhcCCCCHHHHHHHhh
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSE----YLLKGIKTI------EANVRGLVTRGKLTQDKANNALK 374 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~e----~~~~~~~~i------~~~l~~~~~~g~~~~~~~~~~~~ 374 (733)
+++||+|||+|.||.++|.+|+++ |+ +|++||++++ +++...+.. +..++.++++ ....+
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~--------~~~~g 88 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGK--------VVKAG 88 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHH--------HHHTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHh--------hcccC
Confidence 456899999999999999999999 99 9999999999 776642210 0001111100 00135
Q ss_pred ccccccCccccCCCCEEEEeccCCh----------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcc--------cC
Q 004726 375 MLKGVLDYSEFKDVDMVIEAVIESV----------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK--------TS 436 (733)
Q Consensus 375 ~i~~~~~~~~l~~aDlVI~avpe~~----------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~--------~~ 436 (733)
++.++++.+++++||+||+|||++. .......+.+.+.++++++|+ +.||+++...... ..
T Consensus 89 ~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile~~~g 167 (478)
T 3g79_A 89 KFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILEEESG 167 (478)
T ss_dssp CEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHHHHHC
T ss_pred CeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHHHhcC
Confidence 7888888888999999999998753 345566678999999999875 4566665422211 11
Q ss_pred C--CCcEEEEecCCCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcCCC-----Ccchhhhh-
Q 004726 437 S--QDRIIGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKII-KKVPVVVGNCT-----GFAVNRAF- 498 (733)
Q Consensus 437 ~--~~~~ig~h~~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d~p-----Gfi~nRl~- 498 (733)
. ...|.-+ ++|....+.- .|+.|. +++..+.+.++++.+ ++.++++++.. .++.|-++
T Consensus 168 ~~~~~d~~v~--~~Pe~~~~G~a~~~~~~~~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a 243 (478)
T 3g79_A 168 LKAGEDFALA--HAPERVMVGRLLKNIREHDRIVGGI--DEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRD 243 (478)
T ss_dssp CCBTTTBEEE--ECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCcCCceeEE--eCCccCCccchhhhhcCCcEEEEeC--CHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHH
Confidence 1 1112111 2443332211 245443 788889999999999 88888886522 23334332
Q ss_pred --HHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004726 499 --FPYSQSARLLVSL-GVDVFRIDSAI-RSF 525 (733)
Q Consensus 499 --~~~~~Ea~~l~~~-Gv~~~dID~a~-~~~ 525 (733)
.+++||+..+.+. |+++.++-.++ ...
T Consensus 244 ~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~ 274 (478)
T 3g79_A 244 LQIAAINQLALYCEAMGINVYDVRTGVDSLK 274 (478)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc
Confidence 4678999988876 99999998888 444
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=144.22 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=119.2
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
|+++||+|||+|.||.++|..|+++ |++|++||+++++++.+. +.|..+ ..++++
T Consensus 4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~ 61 (290)
T 3b1f_A 4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL-----------ERGIVD-----------EATADFK 61 (290)
T ss_dssp GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH-----------HTTSCS-----------EEESCTT
T ss_pred cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH-----------HcCCcc-----------cccCCHH
Confidence 3457899999999999999999988 689999999998876542 122110 233444
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEEecC------CCCC-
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF------SPAH- 451 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~--~~~l~~~~~~-~~~~ig~h~~------~p~~- 451 (733)
+.+++||+||+||| ......++.++.+. ++++++|++.+++.. ...+.+.+.. ..++++.||+ .|..
T Consensus 62 ~~~~~aDvVilavp--~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a 139 (290)
T 3b1f_A 62 VFAALADVIILAVP--IKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAA 139 (290)
T ss_dssp TTGGGCSEEEECSC--HHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSC
T ss_pred HhhcCCCEEEEcCC--HHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHh
Confidence 56789999999999 55568888899888 888988875444322 2455555544 5689999997 4443
Q ss_pred -----CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 452 -----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 452 -----~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
.+..+.++++..++++.++.+.++++.+|..++++.+
T Consensus 140 ~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 181 (290)
T 3b1f_A 140 NVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA 181 (290)
T ss_dssp CTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred hHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 3355778888778999999999999999998888753
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=139.42 Aligned_cols=148 Identities=12% Similarity=0.093 Sum_probs=114.9
Q ss_pred eEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
||+|||+|.||.++|..|+++| ++|++||+++++++...+. .| +..+++. +.+ +
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~~~-~ 57 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG-------------VETSATLPELH-S 57 (263)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC-------------CEEESSCCCCC-T
T ss_pred EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC-------------CEEeCCHHHHh-c
Confidence 7999999999999999999999 9999999999887764221 01 3334444 667 9
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCC-eeEEecCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTSA 466 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-lveiv~~~~t~~ 466 (733)
||+||+|+| ......++.++.+ + +++|++.++++++..+.+.+....+++..++..|..... ...++++..+++
T Consensus 58 ~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~~ 132 (263)
T 1yqg_A 58 DDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE 132 (263)
T ss_dssp TSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred CCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCCH
Confidence 999999999 6666677766544 4 888888888998888877776555788886655555543 455677777899
Q ss_pred HHHHHHHHHHHHcCCeeEEEc
Q 004726 467 QVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+.++.+.++++.+|..+ +++
T Consensus 133 ~~~~~~~~l~~~~g~~~-~~~ 152 (263)
T 1yqg_A 133 TDRRIADRIMKSVGLTV-WLD 152 (263)
T ss_dssp HHHHHHHHHHHTTEEEE-ECS
T ss_pred HHHHHHHHHHHhCCCEE-EeC
Confidence 99999999999999876 666
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-14 Score=151.12 Aligned_cols=187 Identities=16% Similarity=0.149 Sum_probs=132.7
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++||+|||+|.||..+|..|++.|++|++||+++++++...+ .| +...++. +.++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 85 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-----------EG-------------ARLGRTPAEVVS 85 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-----------TT-------------CEECSCHHHHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------cC-------------CEEcCCHHHHHh
Confidence 468999999999999999999999999999999987665321 12 2223344 5578
Q ss_pred CCCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCC--HHHHhcccC-CCCcEEEEecCCCC---CCCCeeEE
Q 004726 387 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 458 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~-~~~~~ig~h~~~p~---~~~~lvei 458 (733)
+||+||+|+|++..++..+.. .+.+.+.++++|++.+++.+ ...+.+.+. .+.++++.++++.+ ..+.++.+
T Consensus 86 ~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~ 165 (316)
T 2uyy_A 86 TCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVIL 165 (316)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEE
T ss_pred cCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEE
Confidence 899999999976665544432 13356778887765443332 334555442 45678887665432 23345556
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC------cchhhh---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG------fi~nRl---~~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
+.+ +++.++.+.++++.+|+.++++++ +| ++.|.+ +..+++|++.+.+. |+++++++.++
T Consensus 166 ~~g---~~~~~~~v~~ll~~~g~~~~~~~~-~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~ 235 (316)
T 2uyy_A 166 AAG---DRGLYEDCSSCFQAMGKTSFFLGE-VGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDIL 235 (316)
T ss_dssp EEE---CHHHHHHTHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred eCC---CHHHHHHHHHHHHHhcCCEEEeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 665 588999999999999999888876 33 455665 35677899988765 89999999888
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.1e-14 Score=138.40 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeC
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~ 106 (733)
.++..+.++|.+.|..++.+++++.|+|. ..|.|+++.. ...++ +.|..+++||++.++
T Consensus 53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~----InSPGG~v~a----------------g~~I~-~~i~~~~~pV~t~v~ 111 (218)
T 1y7o_A 53 PVEDNMANSVIAQLLFLDAQDSTKDIYLY----VNTPGGSVSA----------------GLAIV-DTMNFIKADVQTIVM 111 (218)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCTTSCEEEE----EEECCBCHHH----------------HHHHH-HHHHHSSSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEE----EECcCCCHHH----------------HHHHH-HHHHhcCCCEEEEEc
Confidence 48899999999999999988778888875 2344444321 22455 568889999999999
Q ss_pred CcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhh------------------hhhhccccCH--HHHHHHHH
Q 004726 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGG------------------TQRLPRLVGL--SKAIEMML 164 (733)
Q Consensus 107 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~------------------~~~l~r~~G~--~~a~~l~l 164 (733)
|.|.++|+.|+++||. |+|.++++|++++.. |..|..|. ...+++..|. .++.+++.
T Consensus 112 G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~ 190 (218)
T 1y7o_A 112 GMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAE 190 (218)
T ss_dssp EEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred cEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 9999999999999999 999999999999987 44443343 2456677676 47889999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcch
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEE 188 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~ 188 (733)
+|+.++|+||+++||||+|+++++
T Consensus 191 ~~~~~ta~EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 191 RDNWMSAQETLEYGFIDEIMANNS 214 (218)
T ss_dssp SCCCBCHHHHHHHTSCSEECCCC-
T ss_pred CCCEEcHHHHHHCCCCcEEcCcCC
Confidence 999999999999999999998765
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-14 Score=151.67 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=118.6
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
.+||+|||+|.||.++|..|+++|++|++||+++++++...+ .| +..++++ +.++
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~ 77 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER-----------EG-------------IAGARSIEEFCA 77 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CEEeCCHHHHHh
Confidence 368999999999999999999999999999999998776421 12 3334444 4566
Q ss_pred CC---CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecCCCC---CCCCeeE
Q 004726 387 DV---DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE 457 (733)
Q Consensus 387 ~a---DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~~p~---~~~~lve 457 (733)
++ |+||+|||.+ ....++.++.+.++++++|++.+++.+.. .+.+.+. ....|+......++ ..++ .
T Consensus 78 ~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~--~ 153 (358)
T 4e21_A 78 KLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY--C 153 (358)
T ss_dssp HSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC--E
T ss_pred cCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC--e
Confidence 67 9999999976 45667788999999999988766655433 3333332 23345544222211 1112 2
Q ss_pred EecCCCCCHHHHHHHHHHHHHcC--------------------CeeEEEcC-CCCcch----hhhh---HHHHHHHHHHH
Q 004726 458 IVRTERTSAQVILDLMTVGKIIK--------------------KVPVVVGN-CTGFAV----NRAF---FPYSQSARLLV 509 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG--------------------~~~v~v~d-~pGfi~----nRl~---~~~~~Ea~~l~ 509 (733)
++.+. ++++++.++++++.+| +.++++++ ..|..+ |-+. ...++|++.++
T Consensus 154 im~GG--~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la 231 (358)
T 4e21_A 154 LMIGG--EKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNIL 231 (358)
T ss_dssp EEEES--CHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecC--CHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 7899999999999999 56788876 223333 3222 24457999988
Q ss_pred Hc
Q 004726 510 SL 511 (733)
Q Consensus 510 ~~ 511 (733)
+.
T Consensus 232 ~~ 233 (358)
T 4e21_A 232 HH 233 (358)
T ss_dssp HT
T ss_pred Hh
Confidence 76
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.3e-14 Score=145.40 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=124.8
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004726 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (733)
Q Consensus 15 i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (733)
|+++..+.. ..|+++..+.+.+.++++.+.++ .+++|+|++.| |+|+.+.... + .....++ ..
T Consensus 120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~~--------l-~~~~~i~-~a 183 (304)
T 2f9y_B 120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALMS--------L-MQMAKTS-AA 183 (304)
T ss_dssp CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHHH--------H-HHHHHHH-HH
T ss_pred EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHHH--------H-HHHHHHH-HH
Confidence 344444433 35999999999999999999988 89999999876 8888654210 1 1122333 33
Q ss_pred H---hcCCCcEEEEeCCcccchh-hHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCC
Q 004726 94 I---EDCKKPIVAAVEGLALGGG-LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (733)
Q Consensus 94 i---~~~~kp~Iaav~G~a~GgG-~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i 169 (733)
+ ...++|+|++|+|.|.||| +.++++||++||.++|+|++. +...+++.+|.. ++++..
T Consensus 184 l~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~~ 246 (304)
T 2f9y_B 184 LAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK------LPPGFQ 246 (304)
T ss_dssp HHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC------CCTTTT
T ss_pred HHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc------CCcccC
Confidence 4 4459999999999999999 788999999999999999987 355566777743 578899
Q ss_pred CHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccC
Q 004726 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (733)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~ 204 (733)
+|++++++|+||.|++++++.+.+.+++..++..+
T Consensus 247 ~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~~~~ 281 (304)
T 2f9y_B 247 RSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLP 281 (304)
T ss_dssp BHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHhcCCccEEeCcHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999987653
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-14 Score=165.42 Aligned_cols=98 Identities=16% Similarity=0.083 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC------
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN------ 692 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~------ 692 (733)
+++||+||++.++++||+++++||+ ++++||.++. ++|||+ |||+++|.+|+|+.+++++.+....+.
T Consensus 495 ~pGFi~NRi~~~~~~ea~~l~~eG~--~~~~id~a~~-~~G~pm---GPf~l~D~vGlDv~~~v~~~~~~~~~~~~~~~~ 568 (742)
T 3zwc_A 495 CYGFVGNRMLAPYYNQGFFLLEEGS--KPEDVDGVLE-EFGFKM---GPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTP 568 (742)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHH-HHTCSS---CHHHHHHHHCHHHHHHHHHHTTSSSTTSCTTCC
T ss_pred CCCccHHHHhhHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---ChHHHHHHhCHHHHHHHHHHHHhhCcccCccch
Confidence 6899999999999999999999995 4999999975 799999 999999999999999999876543321
Q ss_pred -----CCCCCHHHHHHHHCCCCc--cccceeecCCCc
Q 004726 693 -----FFKPSRFLEERATKGIPL--VRIIFHRFSNIF 722 (733)
Q Consensus 693 -----~~~p~~~l~~~~~~g~~g--~g~gfy~y~~~~ 722 (733)
.+.+++++++|+++|++| +|+|||+|++..
T Consensus 569 ~~~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~ 605 (742)
T 3zwc_A 569 VRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPL 605 (742)
T ss_dssp TTEETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTT
T ss_pred hhhcccccccHHHHHHHHCCCccccCCCeeEECCCCC
Confidence 234577999999999999 899999998643
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=145.06 Aligned_cols=186 Identities=16% Similarity=0.140 Sum_probs=128.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||..+|..|++.|++|++||+++++++...+ .| +...+++ +.+++
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~ 60 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA-----------QG-------------AQACENNQKVAAA 60 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT-----------TT-------------CEECSSHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence 48999999999999999999999999999999988765321 12 2233444 55778
Q ss_pred CCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEEecCCCCC----CCCeeEE
Q 004726 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH----VMPLLEI 458 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~~~ig~h~~~p~~----~~~lvei 458 (733)
+|+||+|+|.+..++..+. .++.+.++++++|++.+++.+ ...+.+.+.. ..+++.. +..+.. ...+..+
T Consensus 61 ~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~~~ 139 (301)
T 3cky_A 61 SDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLTIM 139 (301)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEEEE
T ss_pred CCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeEEE
Confidence 9999999996666555444 267788889998887776653 3455554432 2234432 211110 0112333
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCC----cchhhh---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~pG----fi~nRl---~~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
+.+ +++.++.+.++++.+|..++++++ ..| ++.|.+ +...++|++.+.+. |+++++++.++
T Consensus 140 ~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 209 (301)
T 3cky_A 140 VGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEII 209 (301)
T ss_dssp EES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 443 789999999999999999888864 233 234555 34567899888765 89999988887
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-13 Score=137.27 Aligned_cols=183 Identities=11% Similarity=0.093 Sum_probs=128.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
.||+|||+|.||..++..|.+.|++|++||+++++++...+.. | +..++++ +.+++
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----------g-------------~~~~~~~~~~~~~ 60 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------A-------------LPYAMSHQDLIDQ 60 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------T-------------CCBCSSHHHHHHT
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc----------C-------------CEeeCCHHHHHhc
Confidence 4899999999999999999999999999999998876643210 1 2234444 55789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCC-eeEEecCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTSA 466 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-lveiv~~~~t~~ 466 (733)
+|+||+|+| .....+++.+ +.+++++++.+++++++.+.+......+++..|+..|..... ...++++..+++
T Consensus 61 ~D~Vi~~v~--~~~~~~v~~~----l~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~~ 134 (259)
T 2ahr_A 61 VDLVILGIK--PQLFETVLKP----LHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ 134 (259)
T ss_dssp CSEEEECSC--GGGHHHHHTT----SCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred CCEEEEEeC--cHhHHHHHHH----hccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCCH
Confidence 999999999 4444455543 347778888888888888877776555788888877766554 455667777899
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCC--------CcchhhhhHHHHHHHH-HHHHcCCCHHHHHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCT--------GFAVNRAFFPYSQSAR-LLVSLGVDVFRIDSAI 522 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~p--------Gfi~nRl~~~~~~Ea~-~l~~~Gv~~~dID~a~ 522 (733)
+.++.+.++++.+| .++++++.. | -.|.++..+..... .....|++++++-.++
T Consensus 135 ~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g-~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~ 197 (259)
T 2ahr_A 135 ELQARVRDLTDSFG-STFDISEKDFDTFTALAG-SSPAYIYLFIEALAKAGVKNGIPKAKALEIV 197 (259)
T ss_dssp HHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHT-THHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CEEEecHHHccHHHHHhc-cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999 577776521 1 01222233332211 2445577777666655
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-14 Score=165.13 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCC-
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS- 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~- 697 (733)
++++++||++.++++|++.++++|+ ++++||.++ .++|||+ |||+++|.+|+|+.+++++.+++.++++|.|+
T Consensus 495 ~~Gfi~Nril~~~~~Ea~~l~~~G~--~~~~id~~~-~~~G~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~~ 568 (715)
T 1wdk_A 495 CPGFLVNRVLFPYFGGFAKLVSAGV--DFVRIDKVM-EKFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDR 568 (715)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSS
T ss_pred CCChhhhHHHHHHHHHHHHHHHCCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCCccCCCh
Confidence 3789999999999999999999994 699999998 8999999 99999999999999999999988887788988
Q ss_pred -HHHHHHHHCCCCc--cccceeecC
Q 004726 698 -RFLEERATKGIPL--VRIIFHRFS 719 (733)
Q Consensus 698 -~~l~~~~~~g~~g--~g~gfy~y~ 719 (733)
+++++|+++|++| +|+|||+|+
T Consensus 569 ~~~l~~~v~~g~lG~k~g~GfY~y~ 593 (715)
T 1wdk_A 569 RSAIDALYEAKRLGQKNGKGFYAYE 593 (715)
T ss_dssp CCHHHHHHHTTCCBTTTTBSSSEEC
T ss_pred HHHHHHHHhCchhhhcCCcEEEecc
Confidence 8999999999999 899999996
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=136.61 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=115.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
|+||+|||+|.||.++|..|++.|+ +|++||+++++++.+. +.|.. ...++++ +.
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~-----------~~~~~~~~~~ 58 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGII-----------DEGTTSIAKV 58 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSC-----------SEEESCGGGG
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------HCCCc-----------ccccCCHHHH
Confidence 3689999999999999999999999 9999999998876542 12211 0123444 66
Q ss_pred cC-CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCC----------
Q 004726 385 FK-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH---------- 451 (733)
Q Consensus 385 l~-~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~---------- 451 (733)
++ +||+||+|+| ......++.++.+.++++++|++.+++.. ...+.+.+.. ++++.||+..+.
T Consensus 59 ~~~~aDvVilavp--~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~ 134 (281)
T 2g5c_A 59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDN 134 (281)
T ss_dssp GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSS
T ss_pred hcCCCCEEEEcCC--HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhH
Confidence 78 9999999999 55666888888888989988765444332 2334444432 488889865432
Q ss_pred --CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 452 --~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
.+..+.++++..++++..+.+.++++.+|..++++++
T Consensus 135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~ 173 (281)
T 2g5c_A 135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP 173 (281)
T ss_dssp TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 3445777787778999999999999999999888764
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.5e-14 Score=163.27 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCC-CCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF-FKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~-~~p~ 697 (733)
++++++||++.++++|++.++++| + ++++||.++ .++|||+ |||+++|.+|+|+.+++++.+++.++++ |.|
T Consensus 493 ~~Gfi~Nril~~~~~Ea~~l~~~G-~-~~e~id~~~-~~~g~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~- 565 (725)
T 2wtb_A 493 CTGFAVNRMFFPYTQAAMFLVECG-A-DPYLIDRAI-SKFGMPM---GPFRLCDLVGFGVAIATATQFIENFSERTYKS- 565 (725)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHSGGGCCCC-
T ss_pred CccHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCC---CHHHHHHHhchHHHHHHHHHHHHhcCCccCCh-
Confidence 378999999999999999999999 4 699999999 8999999 9999999999999999999999888877 988
Q ss_pred HHHHHHHHCCCCc--cccceeecC
Q 004726 698 RFLEERATKGIPL--VRIIFHRFS 719 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y~ 719 (733)
+++++|+++|++| +|+|||+|+
T Consensus 566 ~~l~~~v~~g~lG~k~g~GfY~y~ 589 (725)
T 2wtb_A 566 MIIPLMQEDKRAGEATRKGFYLYD 589 (725)
T ss_dssp THHHHHHTTC--------------
T ss_pred HHHHHHHHCCCceecCCceeEeCC
Confidence 9999999999999 899999995
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=135.95 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=115.1
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||.++|..|++.|++|++||+++++++.+. +.|.. ...+++++.+++||
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~~-----------~~~~~~~~~~~~~D 59 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLV-----------DEAGQDLSLLQTAK 59 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSC-----------SEEESCGGGGTTCS
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------hCCCC-----------ccccCCHHHhCCCC
Confidence 799999999999999999999999999999998876542 11211 01234443338999
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCC------------CCCeeE
Q 004726 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE 457 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~------------~~~lve 457 (733)
+||+|+| ......+++++.+.++++++|++. ++.....+........++++.||..... ....+.
T Consensus 60 ~vi~av~--~~~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~ 136 (279)
T 2f1k_A 60 IIFLCTP--IQLILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYV 136 (279)
T ss_dssp EEEECSC--HHHHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEE
T ss_pred EEEEECC--HHHHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEE
Confidence 9999999 667788889998889889988764 5555443333222223899999875321 223567
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
++++..++++..+.+.++++.+|..++++++
T Consensus 137 ~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~ 167 (279)
T 2f1k_A 137 LTPTEYTDPEQLACLRSVLEPLGVKIYLCTP 167 (279)
T ss_dssp EEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 7777778999999999999999998888864
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-13 Score=146.27 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=133.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHH------HhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN------ALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~------~~~~i~~~~~~ 382 (733)
-+|+|||+|.||.++|.+|+++|++|++||+++++++...+.. ..+-....++ ..+++.+++++
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~----------~~~~epgl~~~~~~~~~~g~l~~ttd~ 78 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNV----------MPIYEPGLDALVASNVKAGRLSFTTDL 78 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTC----------CSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCC----------CCccCCCHHHHHHhhcccCCEEEECCH
Confidence 3799999999999999999999999999999999887753210 0000000111 12567888888
Q ss_pred -cccCCCCEEEEeccCChH---------HHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh---cccC----CCCcEEEEe
Q 004726 383 -SEFKDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLNIVG---EKTS----SQDRIIGAH 445 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~---~~~~----~~~~~ig~h 445 (733)
+++++||+||.|||.+.+ ...++++.+.+.++++++|++ .||+++.... +.+. ...-.+..
T Consensus 79 ~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~-~STv~pgtt~~l~~~l~e~~~~~d~~v~~- 156 (446)
T 4a7p_A 79 AEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVT-KSTVPVGTGDEVERIIAEVAPNSGAKVVS- 156 (446)
T ss_dssp HHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEE-CSCCCTTHHHHHHHHHHHHSTTSCCEEEE-
T ss_pred HHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCCCchHHHHHHHHHHHhCCCCCceEEe-
Confidence 688999999999987653 567778899999999998875 4566654322 2111 11112222
Q ss_pred cCCCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcCCe---eEEEcCCC-----Ccchhhh---hHHHHHHH
Q 004726 446 FFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKV---PVVVGNCT-----GFAVNRA---FFPYSQSA 505 (733)
Q Consensus 446 ~~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lG~~---~v~v~d~p-----Gfi~nRl---~~~~~~Ea 505 (733)
+|....+.- .++.|. .++++.+.++++++.+++. ++++++.. .++.|-+ ..+++||+
T Consensus 157 --~Pe~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~ 233 (446)
T 4a7p_A 157 --NPEFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEI 233 (446)
T ss_dssp --CCCCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222211 234332 3689999999999998875 57776522 2444533 24678999
Q ss_pred HHHHHc-CCCHHHHHHHH
Q 004726 506 RLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 506 ~~l~~~-Gv~~~dID~a~ 522 (733)
..+.+. |++++++-.++
T Consensus 234 ~~l~~~~GiD~~~v~~~~ 251 (446)
T 4a7p_A 234 ADLCEQVGADVQEVSRGI 251 (446)
T ss_dssp HHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 988866 99999999888
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-13 Score=145.10 Aligned_cols=196 Identities=16% Similarity=0.196 Sum_probs=131.0
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHH----hhccccccCc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA----LKMLKGVLDY 382 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~----~~~i~~~~~~ 382 (733)
.++||+|||+|.||.++|..|++ |++|++||+++++++...+.. ..+.....++. .+++.+++++
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~----------~~i~e~~l~~ll~~~~~~l~~ttd~ 103 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKI----------SPIVDKEIQEYLAEKPLNFRATTDK 103 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccC----------CccccccHHHHHhhccCCeEEEcCH
Confidence 35689999999999999999998 999999999999988754310 01111111211 1367788887
Q ss_pred -cccCCCCEEEEeccCCh---------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHH---HhcccCCCCcEEEEecCCC
Q 004726 383 -SEFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGAHFFSP 449 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~~---------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~~~ig~h~~~p 449 (733)
+++++||+||+|||++. .....+.+.+.+ ++++++|+ ..||+++.. +.+.+.. . ++.| +|
T Consensus 104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV-~~STv~pgtt~~l~~~l~~--~--~v~~-sP 176 (432)
T 3pid_A 104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMI-IKSTIPVGFTRDIKERLGI--D--NVIF-SP 176 (432)
T ss_dssp HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEE-ECSCCCTTHHHHHHHHHTC--C--CEEE-CC
T ss_pred HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEE-EeCCCChHHHHHHHHHHhh--c--cEee-cC
Confidence 77899999999999864 355677788888 88898876 466666543 3333321 2 2222 55
Q ss_pred CCCCCee---------EEecCCCCCHHHHHHHHHHHHH--cCC-eeEEEcC-----CCCcchhhh---hHHHHHHHHHHH
Q 004726 450 AHVMPLL---------EIVRTERTSAQVILDLMTVGKI--IKK-VPVVVGN-----CTGFAVNRA---FFPYSQSARLLV 509 (733)
Q Consensus 450 ~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~--lG~-~~v~v~d-----~pGfi~nRl---~~~~~~Ea~~l~ 509 (733)
....+.- .++.|. +++..+.+.+++.. ++. .++++.+ ...++.|-+ ..+++||+..+.
T Consensus 177 e~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~la 254 (432)
T 3pid_A 177 EFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYA 254 (432)
T ss_dssp CCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444321 244443 45677888999886 553 3565543 112344543 246789999888
Q ss_pred Hc-CCCHHHHHHHH
Q 004726 510 SL-GVDVFRIDSAI 522 (733)
Q Consensus 510 ~~-Gv~~~dID~a~ 522 (733)
+. |++++++-.++
T Consensus 255 e~~GiD~~~v~~~~ 268 (432)
T 3pid_A 255 ESQGLNSKQIIEGV 268 (432)
T ss_dssp HHTTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHH
Confidence 66 99999998888
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=145.29 Aligned_cols=194 Identities=14% Similarity=0.113 Sum_probs=131.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH--------HHHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
.|..|||+|.||.++|.+|+++||+|++||+++++++...+. +...+.+.+. .+++.+++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~------------~g~l~~tt 79 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLS------------SGKLKVST 79 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEEES
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcc------------cCceEEeC
Confidence 589999999999999999999999999999999998875321 0111111111 24677777
Q ss_pred CccccCCCCEEEEeccCChH----------HHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhccc----C-CC----CcE
Q 004726 381 DYSEFKDVDMVIEAVIESVP----------LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----S-SQ----DRI 441 (733)
Q Consensus 381 ~~~~l~~aDlVI~avpe~~~----------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~-~~----~~~ 441 (733)
+ +++||+||.|||.+.+ ......+.+.+.++++++|+. .||+++....+.. . .. ..|
T Consensus 80 d---~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~-~STV~pgtt~~v~~~i~e~~g~~~~~d~ 155 (431)
T 3ojo_A 80 T---PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIV-ESTIAPKTMDDFVKPVIENLGFTIGEDI 155 (431)
T ss_dssp S---CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEE-CSCCCTTHHHHTHHHHHHTTTCCBTTTE
T ss_pred c---hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEE-ecCCChhHHHHHHHHHHHHcCCCcCCCe
Confidence 6 4589999999997652 345556789999999998764 5666665332221 1 11 112
Q ss_pred EEEecCCCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-----CCcchhhhh---HHHHHH
Q 004726 442 IGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGFAVNRAF---FPYSQS 504 (733)
Q Consensus 442 ig~h~~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-----pGfi~nRl~---~~~~~E 504 (733)
.-+ ++|....+.- .++.|. ++++.+.++++++.+++.++++++. ..++.|-++ .+++||
T Consensus 156 ~v~--~~Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE 231 (431)
T 3ojo_A 156 YLV--HCPERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANE 231 (431)
T ss_dssp EEE--ECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE--ECCCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2443332221 355553 6899999999999999888877542 123334332 467899
Q ss_pred HHHHHHc-CCCHHHHHHHH
Q 004726 505 ARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 505 a~~l~~~-Gv~~~dID~a~ 522 (733)
+..+.+. |+++.++-.++
T Consensus 232 ~~~l~e~~GiD~~~v~~~~ 250 (431)
T 3ojo_A 232 LTKICNNLNINVLDVIEMA 250 (431)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 9988876 99999999888
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=145.55 Aligned_cols=180 Identities=18% Similarity=0.141 Sum_probs=124.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 388 (733)
||+|||+|.||.++|..|++.|++|++||+++++++...+ .| +..+++. +.++++
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~~ 57 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD-----------AG-------------EQVVSSPADVAEKA 57 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT-----------TT-------------CEECSSHHHHHHHC
T ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhcC
Confidence 6999999999999999999999999999999988765421 11 3334444 557889
Q ss_pred CEEEEeccCChHHHHHHHHH---HHHhCCCCeEEEecCCCCCHHHHhcc---cCCCCcEEEEecCCCCCCC-------Ce
Q 004726 389 DMVIEAVIESVPLKQKIFSE---LEKACPPHCILATNTSTIDLNIVGEK---TSSQDRIIGAHFFSPAHVM-------PL 455 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~---l~~~~~~~~ii~s~tS~~~~~~l~~~---~~~~~~~ig~h~~~p~~~~-------~l 455 (733)
|+||+|+|.+..++. ++.+ +.+.++++++|++ +|++.+...... .... +.+|.+.|... +.
T Consensus 58 Dvvi~~vp~~~~~~~-v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----g~~~~~~p~~~g~~~a~~~~ 131 (296)
T 2gf2_A 58 DRIITMLPTSINAIE-AYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM----GAVFMDAPVSGGVGAARSGN 131 (296)
T ss_dssp SEEEECCSSHHHHHH-HHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHHTC
T ss_pred CEEEEeCCCHHHHHH-HHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEEcCCCCChhHHhcCc
Confidence 999999985555544 4444 3345678888887 888887654432 2211 22333322111 12
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC--c---chhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG--F---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG--f---i~nRl~~----~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
..++.+ .+++.++.+.++++.+|..++.+++ .| . ++|+.+. .+++|++.+.+. |+++++++.++
T Consensus 132 ~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~-~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~ 205 (296)
T 2gf2_A 132 LTFMVG--GVEDEFAAAQELLGCMGSNVVYCGA-VGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKIL 205 (296)
T ss_dssp EEEEEE--SCGGGHHHHHHHHTTTEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 334444 3688999999999999999888876 33 1 2243432 467899987765 89999999988
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=143.21 Aligned_cols=200 Identities=15% Similarity=0.075 Sum_probs=134.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHH------HhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN------ALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~------~~~~i~~~~~~ 382 (733)
+||+|||+|.||.++|..|+++|++|++||+++++++...+.. ..+.....+. ..+++.+++++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~----------~~i~e~gl~~~l~~~~~~~~l~~t~d~ 72 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGT----------IPIYEPGLEKMIARNVKAGRLRFGTEI 72 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTC----------SCCCSTTHHHHHHHHHHTTSEEEESCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCC----------CcccCCCHHHHHHhhcccCcEEEECCH
Confidence 4899999999999999999999999999999999887753310 0000000010 12467778887
Q ss_pred -cccCCCCEEEEeccCCh--------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHH---HhcccCC-------CCcEEE
Q 004726 383 -SEFKDVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSS-------QDRIIG 443 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~-------~~~~ig 443 (733)
+++++||+||+|||.+. ....++++++.+.++++++|++. ||+++.. +.+.+.. ...+.-
T Consensus 73 ~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgt~~~l~~~l~~~~~~~~~~~d~~v 151 (450)
T 3gg2_A 73 EQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTK-STVPVGSYRLIRKAIQEELDKREVLIDFDI 151 (450)
T ss_dssp HHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC-SCCCTTHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEe-eeCCCcchHHHHHHHHHhccccCcCcceeE
Confidence 46899999999998664 26778889999999999988654 4555432 2222110 011211
Q ss_pred EecCCCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcCC--eeEEEcCCC-----Ccchhhh---hHHHHHH
Q 004726 444 AHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKK--VPVVVGNCT-----GFAVNRA---FFPYSQS 504 (733)
Q Consensus 444 ~h~~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lG~--~~v~v~d~p-----Gfi~nRl---~~~~~~E 504 (733)
. ++|....+.. .++.|. .++++.+.++++++.+++ .++++++.. +++.|-+ ..+++||
T Consensus 152 ~--~~Pe~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE 228 (450)
T 3gg2_A 152 A--SNPEFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMND 228 (450)
T ss_dssp E--ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E--echhhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1343333221 133332 368999999999999987 366665532 3455643 3567899
Q ss_pred HHHHHHc-CCCHHHHHHHH
Q 004726 505 ARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 505 a~~l~~~-Gv~~~dID~a~ 522 (733)
+..+.+. |++++++-.++
T Consensus 229 ~~~l~~~~Gid~~~v~~~~ 247 (450)
T 3gg2_A 229 VANLCERVGADVSMVRLGI 247 (450)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 9988877 99999999998
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-13 Score=150.91 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHH
Q 004726 463 RTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLD 536 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv--~~~dID~a~-~~~G~p~---Gpf~~~D 536 (733)
.+++++.+.+.++.+.+|+.++.+ .+|+|+||++.+++|||++++++|+ +++|||.+| .++|||+ |||+++|
T Consensus 331 ~~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D 408 (463)
T 1zcj_A 331 KPDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAA 408 (463)
T ss_dssp EECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHH
Confidence 468999999998888888765543 3799999999999999999999997 599999999 9999998 9999999
Q ss_pred hhchHHHHHHHHHHHHhCCC--CCCCcHHHHHHHHcCC
Q 004726 537 LAGYGVAAATSKEFDKAFPD--RSFQSPLVDLLLKSGR 572 (733)
Q Consensus 537 ~~Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~v~~g~ 572 (733)
.+|+|+++++++.+++.+++ ++.|+++|++|+++|+
T Consensus 409 ~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~ 446 (463)
T 1zcj_A 409 SVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGS 446 (463)
T ss_dssp HHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTC
T ss_pred HhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCC
Confidence 99999999999999999998 5669999999999886
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-12 Score=135.61 Aligned_cols=168 Identities=14% Similarity=0.183 Sum_probs=111.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc---cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---SE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~ 384 (733)
++||+|||+|.||.++|..|+++|++|++||+++++++...+. |.............+..+++. +.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN-----------GLIADFNGEEVVANLPIFSPEEIDHQ 71 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-----------CEEEEETTEEEEECCCEECGGGCCTT
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC-----------CEEEEeCCCeeEecceeecchhhccc
Confidence 3589999999999999999999999999999999887664321 100000000000112222322 23
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-HHHhcccCCCCcEE-EEecCCCCCCCC--------
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP-------- 454 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~~~i-g~h~~~p~~~~~-------- 454 (733)
++++|+||+|+| .....++++++.+.++++++|++.++++.. ..+.+.+. +.+++ |.++...+..+|
T Consensus 72 ~~~~d~vi~~v~--~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~~ 148 (316)
T 2ew2_A 72 NEQVDLIIALTK--AQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLGD 148 (316)
T ss_dssp SCCCSEEEECSC--HHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECSC
T ss_pred CCCCCEEEEEec--cccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEecC
Confidence 448999999999 456688889999999999998888777765 44555543 23677 444332222221
Q ss_pred -eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004726 455 -LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489 (733)
Q Consensus 455 -lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~ 489 (733)
.+.+.....++++..+.+.++++.+|..+++..+.
T Consensus 149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~ 184 (316)
T 2ew2_A 149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNV 184 (316)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTH
T ss_pred CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhH
Confidence 12344444567899999999999999887776653
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.8e-13 Score=138.74 Aligned_cols=188 Identities=18% Similarity=0.206 Sum_probs=126.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||..+|..|++.|++|++||+++++++...+ .| +..++++ +.+++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~ 61 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ 61 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence 38999999999999999999999999999999988765421 12 2334444 55788
Q ss_pred CCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCH--HHHhcccCC-CCcEEEEecC-CCC-CCCCeeEEec
Q 004726 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF-SPA-HVMPLLEIVR 460 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~~~ig~h~~-~p~-~~~~lveiv~ 460 (733)
+|+||+|+|.+..++..++ +++.+.++++++|++.+++.+. ..+.+.+.. ...++....+ +++ .....+.++.
T Consensus 62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~ 141 (299)
T 1vpd_A 62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV 141 (299)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEe
Confidence 9999999996665554443 5677888899988765544432 345444432 2233322111 000 0011234444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCcc---hhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 461 TERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~pGfi---~nRl~----~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
+. +++.++.+.++++.+|..++++++ ..|.. +|+.+ ...++|++.+.+. |+++++++.++
T Consensus 142 ~~--~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 210 (299)
T 1vpd_A 142 GG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAI 210 (299)
T ss_dssp ES--CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 789999999999999999988865 33332 13332 3567898887755 89999998887
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.7e-13 Score=148.82 Aligned_cols=202 Identities=16% Similarity=0.177 Sum_probs=136.7
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCC--CHHHHHHHh-----hcccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL--TQDKANNAL-----KMLKG 378 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~--~~~~~~~~~-----~~i~~ 378 (733)
|+||+|||+|.||.++|..|+++ |++|++||+++++++... .+.. .....+..+ .++.+
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~------------~g~~~i~e~~l~~~~~~~~~~~~~~ 72 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWN------------SPTLPIYEPGLKEVVESCRGKNLFF 72 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT------------SSSCSSCCTTHHHHHHHHBTTTEEE
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHh------------CCCCCcCCCCHHHHHHHhhcCCEEE
Confidence 46899999999999999999999 899999999999877632 1111 000011111 24666
Q ss_pred ccCc-cccCCCCEEEEeccCChHH-------------HHHHHHHHHHhCCCCeEEEecCCCCCHHH---HhcccCCC-Cc
Q 004726 379 VLDY-SEFKDVDMVIEAVIESVPL-------------KQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSSQ-DR 440 (733)
Q Consensus 379 ~~~~-~~l~~aDlVI~avpe~~~~-------------k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~-~~ 440 (733)
++++ +++++||+||+|||.+... ...+.+++.+.++++++|+ ++|+.++.. +.+.+... ..
T Consensus 73 t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~~g~~~~l~~~l~~~~~~ 151 (467)
T 2q3e_A 73 STNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT-EKSTVPVRAAESIRRIFDANTKP 151 (467)
T ss_dssp ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEE-ECSCCCTTHHHHHHHHHHHTCCT
T ss_pred ECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEE-ECCcCCchHHHHHHHHHHHhCCC
Confidence 6776 5788999999999865532 4566778888889998875 455554432 33222211 11
Q ss_pred EEEEe-cCCCCCCCCeeE---------E-ecCCC--CCHHHHHHHHHHHHHc-CCeeEEEcC-----CCCcchhhh---h
Q 004726 441 IIGAH-FFSPAHVMPLLE---------I-VRTER--TSAQVILDLMTVGKII-KKVPVVVGN-----CTGFAVNRA---F 498 (733)
Q Consensus 441 ~ig~h-~~~p~~~~~lve---------i-v~~~~--t~~e~~~~~~~l~~~l-G~~~v~v~d-----~pGfi~nRl---~ 498 (733)
.+..+ .++|....+... + +.++. +++++.+.+.++++.+ |+.++++++ ..+++.|.+ .
T Consensus 152 ~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ 231 (467)
T 2q3e_A 152 NLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQR 231 (467)
T ss_dssp TCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHH
Confidence 11111 235555444332 3 34433 3788999999999998 777888764 346777875 3
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 499 FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 499 ~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+++||+..+.+. |++++++..++
T Consensus 232 ia~~nE~~~l~~~~Gid~~~v~~~~ 256 (467)
T 2q3e_A 232 ISSINSISALCEATGADVEEVATAI 256 (467)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5788999998877 89999999998
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-13 Score=134.94 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=111.6
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEE-EeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~-~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
+.|+||+|||+|.||.++|..|+++|++|++ +|++++++++..+.. | .....++.+.
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~----------g------------~~~~~~~~~~ 78 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRF----------G------------ASVKAVELKD 78 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHH----------T------------TTEEECCHHH
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHh----------C------------CCcccChHHH
Confidence 4567999999999999999999999999999 999999877643211 1 1112334466
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--------------CHHHHhcccCCCCcEEEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--------------DLNIVGEKTSSQDRIIGAHFFSPA 450 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--------------~~~~l~~~~~~~~~~ig~h~~~p~ 450 (733)
++++|+||+|+| +....++++++.+ + ++++|++.+.++ ....+++.+. ..+++..+++.|.
T Consensus 79 ~~~aDvVilavp--~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~ 153 (220)
T 4huj_A 79 ALQADVVILAVP--YDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPA 153 (220)
T ss_dssp HTTSSEEEEESC--GGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCH
T ss_pred HhcCCEEEEeCC--hHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCH
Confidence 889999999998 6777788877765 4 477888877766 3455666554 4567766654433
Q ss_pred CCC---------CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 451 HVM---------PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 451 ~~~---------~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
... +...++.+ .+++..+.+.++++.+|+.++.+++
T Consensus 154 ~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~ 198 (220)
T 4huj_A 154 AVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGT 198 (220)
T ss_dssp HHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred HHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence 221 12233344 3699999999999999999999875
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-13 Score=141.90 Aligned_cols=183 Identities=17% Similarity=0.160 Sum_probs=125.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++||+|||+|.||..+|..|++.|++|++|| ++++++...+ .| +...++. +.++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 57 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLS-----------LG-------------AVNVETARQVTE 57 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence 3589999999999999999999999999999 8877655321 12 2233444 5578
Q ss_pred CCCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCCC--------CC
Q 004726 387 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV--------MP 454 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~~--------~~ 454 (733)
+||+||+|+|.+..++..+.. ++.+.++++++|++.+++.+ ...+.+.+... +.||++.|.. ..
T Consensus 58 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g~ 133 (295)
T 1yb4_A 58 FADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREGT 133 (295)
T ss_dssp TCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTC
T ss_pred cCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcCC
Confidence 999999999966555444332 56677888998876555532 23454444321 3444433321 13
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-CC----cchhhh---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-pG----fi~nRl---~~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
+..++.+ +++.++.+.++++.+|..++++++. .+ ++.|.+ +...++|+..+.+. |++++++..++
T Consensus 134 ~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 207 (295)
T 1yb4_A 134 LSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL 207 (295)
T ss_dssp EEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred eEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3434444 7899999999999999998888652 22 334543 23567899888866 89999998888
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=133.61 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=108.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC----CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
+||+|||+|.||.++|..|+++| ++|++||+++++ .| +..+++. +
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~~ 54 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNEE 54 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHHH
Confidence 48999999999999999999999 799999998764 01 2233344 5
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-EecCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~~~ 462 (733)
.+++||+||+|+| .....+++.++.+.+ +++++++.++++++..+.+.+....+++...+..|......+. +++++
T Consensus 55 ~~~~~D~vi~~v~--~~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~ 131 (262)
T 2rcy_A 55 LARHCDIIVCAVK--PDIAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNK 131 (262)
T ss_dssp HHHHCSEEEECSC--TTTHHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEECT
T ss_pred HHhcCCEEEEEeC--HHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeCC
Confidence 6788999999999 445678888888877 5667778889998887777665433444333333333333333 55677
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 463 RTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
.++++.++.+.++++.+|+ ++++++
T Consensus 132 ~~~~~~~~~~~~ll~~~G~-~~~~~~ 156 (262)
T 2rcy_A 132 NVNSTDKKYVNDIFNSCGI-IHEIKE 156 (262)
T ss_dssp TCCHHHHHHHHHHHHTSEE-EEECCG
T ss_pred CCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence 7899999999999999997 777764
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-13 Score=146.16 Aligned_cols=197 Identities=15% Similarity=0.101 Sum_probs=131.4
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHH------hhccccccCc-
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA------LKMLKGVLDY- 382 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~------~~~i~~~~~~- 382 (733)
||+|||+|.||.++|..|+++|++|++||+++++++...+.. -.+.....+.. .+++.+++++
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~----------~~i~e~~l~~~~~~~~~~g~l~~t~~~~ 71 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGK----------SPIVEPGLEALLQQGRQTGRLSGTTDFK 71 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC----------CSSCCTTHHHHHHHHHHTTCEEEESCHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCC----------CCcCCCCHHHHHHhhcccCceEEeCCHH
Confidence 799999999999999999999999999999999887643210 00000001111 2456777777
Q ss_pred cccCCCCEEEEeccCChH--------HHHHHHHHHHHhCCC---CeEEEecCCCCCHHH----HhcccCC--CCc-----
Q 004726 383 SEFKDVDMVIEAVIESVP--------LKQKIFSELEKACPP---HCILATNTSTIDLNI----VGEKTSS--QDR----- 440 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~--------~k~~v~~~l~~~~~~---~~ii~s~tS~~~~~~----l~~~~~~--~~~----- 440 (733)
+++++||+||+|||.+.. ....+++++.+.+++ +++|+. .|+.++.. +.+.+.. ..+
T Consensus 72 ~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l~~~l~~~~g~~~~~~~ 150 (436)
T 1mv8_A 72 KAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAGVDF 150 (436)
T ss_dssp HHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred HHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHHHHHHHHhcCcccCCcE
Confidence 468999999999987554 134567888888888 887764 44544332 2222211 111
Q ss_pred EEEEecCCCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-----CCCcchhhhh---HHHHH
Q 004726 441 IIGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-----CTGFAVNRAF---FPYSQ 503 (733)
Q Consensus 441 ~ig~h~~~p~~~~~lv---------eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-----~pGfi~nRl~---~~~~~ 503 (733)
.+. ++|....+.. .++.|. ++++..+.+.++++.+|.. +++.+ ..+++.|.+. .+++|
T Consensus 151 ~v~---~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~~ae~~Kl~~N~~~a~~ia~~n 225 (436)
T 1mv8_A 151 GVG---TNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAP-IIRKTVEVAEMIKYTCNVWHAAKVTFAN 225 (436)
T ss_dssp EEE---ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSC-EEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE---ECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCC-EEcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 2444443322 244443 3689999999999999984 44443 2346667643 57889
Q ss_pred HHHHHHHc-CCCHHHHHHHH
Q 004726 504 SARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 504 Ea~~l~~~-Gv~~~dID~a~ 522 (733)
|+..+.+. |++++++..++
T Consensus 226 E~~~l~~~~Gid~~~v~~~~ 245 (436)
T 1mv8_A 226 EIGNIAKAVGVDGREVMDVI 245 (436)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHh
Confidence 99988876 89999999988
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=137.40 Aligned_cols=169 Identities=13% Similarity=0.057 Sum_probs=114.6
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
+..+||+|||+|.||.++|..|+++|++|++||++++.++...+.-.+ .....|. ....++.+++++ ++
T Consensus 27 ~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~---~~~l~g~-------~l~~~i~~t~d~~ea 96 (356)
T 3k96_A 27 PFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVN---NRYLPNY-------PFPETLKAYCDLKAS 96 (356)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSB---TTTBTTC-------CCCTTEEEESCHHHH
T ss_pred ccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC---cccCCCC-------ccCCCeEEECCHHHH
Confidence 334689999999999999999999999999999999987764321000 0000010 011345667777 57
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH------HHhcccCCCCcEEEEecCCCCC------C
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN------IVGEKTSSQDRIIGAHFFSPAH------V 452 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~------~l~~~~~~~~~~ig~h~~~p~~------~ 452 (733)
+++||+||+||| ....+++++++.+.++++++|++.++++.+. .+.+.+.. ..+.-. ..|.. .
T Consensus 97 ~~~aDvVilaVp--~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~vl--sgP~~a~ev~~g 171 (356)
T 3k96_A 97 LEGVTDILIVVP--SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAVI--SGPSLATEVAAN 171 (356)
T ss_dssp HTTCCEEEECCC--HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEEE--ESSCCHHHHHTT
T ss_pred HhcCCEEEECCC--HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEEE--ECccHHHHHHcC
Confidence 899999999999 6788899999999999999998888877764 23333331 122111 12221 1
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 453 ~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
.+..-++.+ .+++..+.+++++...+.++++..|..|
T Consensus 172 ~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g 208 (356)
T 3k96_A 172 LPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIG 208 (356)
T ss_dssp CCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHH
T ss_pred CCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHH
Confidence 122222222 4789999999999998888887777543
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=145.05 Aligned_cols=200 Identities=14% Similarity=0.151 Sum_probs=133.9
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCC--HHHHHHH-----hhccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--QDKANNA-----LKMLK 377 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~--~~~~~~~-----~~~i~ 377 (733)
+++||+|||+|.||.++|.+|+++ |++|++||+++++++...+ +... ....+.. .+++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~------------g~~~i~e~gl~~~~~~~~~~~l~ 75 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNS------------DKLPIYEPGLDEIVFAARGRNLF 75 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHC------------CCCCcCCCCHHHHHHHhhcCCEE
Confidence 456999999999999999999998 7999999999998876421 1110 0011111 13467
Q ss_pred cccCc-cccCCCCEEEEeccCCh-------------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHH---HhcccCC--C
Q 004726 378 GVLDY-SEFKDVDMVIEAVIESV-------------PLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSS--Q 438 (733)
Q Consensus 378 ~~~~~-~~l~~aDlVI~avpe~~-------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~--~ 438 (733)
+++++ +++++||+||+|||... .....+++.+.+.++++++|+. .||+++.. +.+.+.. .
T Consensus 76 ~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~~ 154 (481)
T 2o3j_A 76 FSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE-KSTVPVKAAESIGCILREAQK 154 (481)
T ss_dssp EESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHTC
T ss_pred EECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHHHHHhhC
Confidence 77776 67899999999998654 2467778889999999998864 44555432 2222211 1
Q ss_pred ----Cc-EEEEecCCCCCCCCee---------EEecCCCCC---HHHHHHHHHHHHHcCC-eeEEEcC-----CCCcchh
Q 004726 439 ----DR-IIGAHFFSPAHVMPLL---------EIVRTERTS---AQVILDLMTVGKIIKK-VPVVVGN-----CTGFAVN 495 (733)
Q Consensus 439 ----~~-~ig~h~~~p~~~~~lv---------eiv~~~~t~---~e~~~~~~~l~~~lG~-~~v~v~d-----~pGfi~n 495 (733)
.. .+..+| ....+.. .++.|...+ +++++.+.++++.+++ .++++++ ...++.|
T Consensus 155 ~~~~~d~~v~~~P---e~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N 231 (481)
T 2o3j_A 155 NNENLKFQVLSNP---EFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVAN 231 (481)
T ss_dssp ----CCEEEEECC---CCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHH
T ss_pred cCcCCceEEEeCc---ccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHH
Confidence 11 233333 3222211 244332222 3688999999999996 6777654 3345667
Q ss_pred hh---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 496 RA---FFPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 496 Rl---~~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+ ..+++||+..+.+. |++++++..++
T Consensus 232 ~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~ 262 (481)
T 2o3j_A 232 AFLAQRISSINSISAVCEATGAEISEVAHAV 262 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 53 45788999998877 99999999988
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.9e-13 Score=147.22 Aligned_cols=191 Identities=13% Similarity=0.072 Sum_probs=130.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
.+|+|||+|.||.+||..|+++|++|++||+++++++...+.. .. + ..+..++++ +.+++
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~-~-----------~gi~~~~s~~e~v~~ 71 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANE-------AK-G-----------KSIIGATSIEDFISK 71 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTT-------TT-T-----------SSEECCSSHHHHHHT
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHccc-------cc-C-----------CCeEEeCCHHHHHhc
Confidence 5799999999999999999999999999999999887653200 00 0 124445555 34444
Q ss_pred ---CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecCCCCC---CCCeeEE
Q 004726 388 ---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI 458 (733)
Q Consensus 388 ---aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~~p~~---~~~lvei 458 (733)
||+||+|||.+..+ +.+++++.+.++++++|++.+++.+.. .+.+.+. ....|+++.....+. .++ .+
T Consensus 72 l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~--~i 148 (497)
T 2p4q_A 72 LKRPRKVMLLVKAGAPV-DALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP--SL 148 (497)
T ss_dssp SCSSCEEEECCCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred CCCCCEEEEEcCChHHH-HHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC--eE
Confidence 99999999965554 455688999999999888766555432 3443332 223455543222211 112 24
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCe------eEEEcC-CCC----cchhhhh---HHHHHHHHHHHHc--CCCHHHHHHHH
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKV------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRIDSAI 522 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d-~pG----fi~nRl~---~~~~~Ea~~l~~~--Gv~~~dID~a~ 522 (733)
+.+. ++++++.++++++.+|+. ++++++ ..| ++.|.+. ...++|++.+.+. |++++++..++
T Consensus 149 m~gg--~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~ 226 (497)
T 2p4q_A 149 MPGG--SEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVF 226 (497)
T ss_dssp EEEE--CGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred EecC--CHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 4443 688999999999999988 666654 233 2356664 4567899998876 89999999887
Q ss_pred H
Q 004726 523 R 523 (733)
Q Consensus 523 ~ 523 (733)
.
T Consensus 227 ~ 227 (497)
T 2p4q_A 227 A 227 (497)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=143.06 Aligned_cols=191 Identities=14% Similarity=0.066 Sum_probs=130.2
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
.-++|+|||+|.||.+||..|+++|++|++||+++++++...+.. . + ..+..++++ +.+
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~--------~-~-----------~gi~~~~s~~e~v 73 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN--------P-G-----------KKLVPYYTVKEFV 73 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS--------T-T-----------SCEEECSSHHHHH
T ss_pred CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC--------C-C-----------CCeEEeCCHHHHH
Confidence 346899999999999999999999999999999999877653210 0 0 124445555 445
Q ss_pred CC---CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecCCCC---CCCCee
Q 004726 386 KD---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL 456 (733)
Q Consensus 386 ~~---aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~~p~---~~~~lv 456 (733)
++ ||+||.|||....+ +.+++++.+.++++++|++.+++.+.. .+.+.+. ...+++++.....+ ..++
T Consensus 74 ~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-- 150 (480)
T 2zyd_A 74 ESLETPRRILLMVKAGAGT-DAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-- 150 (480)
T ss_dssp HTBCSSCEEEECSCSSSHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--
T ss_pred hCCCCCCEEEEECCCHHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC--
Confidence 54 99999999965444 466688989999999888766665432 3444332 23355554221111 1222
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcCC-CC----cchhhhh---HHHHHHHHHHHHc--CCCHHHHH
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKV-------PVVVGNC-TG----FAVNRAF---FPYSQSARLLVSL--GVDVFRID 519 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~-------~v~v~d~-pG----fi~nRl~---~~~~~Ea~~l~~~--Gv~~~dID 519 (733)
.++.+. +++.++.++++++.+|.. +.++++. .| ++.|.+. ...+.|++.+... |++++++.
T Consensus 151 ~i~~gg--~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~ 228 (480)
T 2zyd_A 151 SIMPGG--QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELA 228 (480)
T ss_dssp EEEEES--CHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred eEEecC--CHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 244443 689999999999999987 5666642 12 2346553 4556799998876 99999988
Q ss_pred HHH
Q 004726 520 SAI 522 (733)
Q Consensus 520 ~a~ 522 (733)
.++
T Consensus 229 ~l~ 231 (480)
T 2zyd_A 229 QTF 231 (480)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=141.99 Aligned_cols=192 Identities=13% Similarity=0.054 Sum_probs=129.2
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc-
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE- 384 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~- 384 (733)
.+++|+|||+|.||.+||..|+++|++|++||+++++++...+ .+... ..+..++++ +.
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~g--------~~i~~~~s~~e~v 63 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKG--------TKVVGAQSLKEMV 63 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTT--------SSCEECSSHHHHH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------cccCC--------CceeccCCHHHHH
Confidence 3468999999999999999999999999999999998776532 11000 123333444 22
Q ss_pred --cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecCCCC---CCCCee
Q 004726 385 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL 456 (733)
Q Consensus 385 --l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~~p~---~~~~lv 456 (733)
++++|+||+|||.+..+ ..+++++.+.++++.+|++.+++.+.. .+.+.+. ....|++......+ ..++
T Consensus 64 ~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-- 140 (484)
T 4gwg_A 64 SKLKKPRRIILLVKAGQAV-DDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-- 140 (484)
T ss_dssp HTBCSSCEEEECSCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--
T ss_pred hhccCCCEEEEecCChHHH-HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC--
Confidence 34699999999966554 456688999999999988766665433 2222222 23345554221111 1122
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCee-------EEEcCCCC------cchhhhh---HHHHHHHHHHHHc--CCCHHHH
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVP-------VVVGNCTG------FAVNRAF---FPYSQSARLLVSL--GVDVFRI 518 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~-------v~v~d~pG------fi~nRl~---~~~~~Ea~~l~~~--Gv~~~dI 518 (733)
-++.+. ++++++.++++++.+|..+ +++++ +| .+-|-+. ...++|++.+++. |++++++
T Consensus 141 ~im~GG--~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~-~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l 217 (484)
T 4gwg_A 141 SLMPGG--NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGD-EGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEM 217 (484)
T ss_dssp EEEEEE--CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEE-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred eeecCC--CHHHHHHHHHHHHHhcCcccCCCceEEEECC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 234443 6899999999999999877 67765 33 2334443 3456899999876 8899999
Q ss_pred HHHHH
Q 004726 519 DSAIR 523 (733)
Q Consensus 519 D~a~~ 523 (733)
-.++.
T Consensus 218 ~~v~~ 222 (484)
T 4gwg_A 218 AQAFE 222 (484)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88873
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-12 Score=132.69 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=103.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
++++++..+.+.++++.+++.. +-+|.|.-.++++. |.+..+. .......+.+ ..+..+++|+|++|
T Consensus 139 G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~Ga~~-g~~ae~~----------g~~~~~a~~l-~al~~~~vPvIavV 205 (327)
T 2f9i_A 139 GMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTKGAYP-GKAAEER----------GQSESIATNL-IEMASLKVPVIAIV 205 (327)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-CHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCCc-chhhhhh----------hhHHHHHHHH-HHHHhCCCCEEEEE
Confidence 6899999999999999988664 55666653333222 2211110 1122333455 56899999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
+|.|.|||+.++++||+++|.++++|++ +.|.++++.++.+..+...+.++ ..++|++|+++|+||+|+|
T Consensus 206 ~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~VV~ 275 (327)
T 2f9i_A 206 IGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDDVIS 275 (327)
T ss_dssp EEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSEEEC
T ss_pred ECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceEEec
Confidence 9999999999999999999999999996 34666656555555555777776 7899999999999999998
Q ss_pred c
Q 004726 186 S 186 (733)
Q Consensus 186 ~ 186 (733)
.
T Consensus 276 e 276 (327)
T 2f9i_A 276 E 276 (327)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-12 Score=134.21 Aligned_cols=139 Identities=17% Similarity=0.115 Sum_probs=105.5
Q ss_pred cceEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 308 VRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 308 ~~kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
++||+||| +|.||.++|..|++.|++|++||++++. +..+.++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~~ 64 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESILA 64 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHHT
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHhc
Confidence 46899999 9999999999999999999999998752 0013467
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCC----CCCeeEEec
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH----VMPLLEIVR 460 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~----~~~lveiv~ 460 (733)
+||+||+||| +.....+++++.+.++++++|++.+|+.. +..+.+.. +.++++.||+.++. .+..+.+++
T Consensus 65 ~aDvVilavp--~~~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~~ 140 (298)
T 2pv7_A 65 NADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRCD 140 (298)
T ss_dssp TCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEEE
T ss_pred CCCEEEEeCC--HHHHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEec
Confidence 8999999999 55578889999888999998765544322 23333332 46899999965443 233455555
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 461 TERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
+. +++.++.+.++++.+|..++++.+
T Consensus 141 ~~--~~~~~~~v~~l~~~~G~~~~~~~~ 166 (298)
T 2pv7_A 141 GR--FPERYEWLLEQIQIWGAKIYQTNA 166 (298)
T ss_dssp EE--CGGGTHHHHHHHHHTTCEEEECCH
T ss_pred CC--CHHHHHHHHHHHHHcCCEEEECCH
Confidence 54 788899999999999999888753
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-12 Score=140.62 Aligned_cols=191 Identities=13% Similarity=0.027 Sum_probs=129.6
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
.++|+|||+|.||.++|..|+++|++|++||+++++++...+.. . + ..+..++++ +.++
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~--------~-~-----------~gi~~~~s~~e~v~ 64 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEH--------Q-D-----------KNLVFTKTLEEFVG 64 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT--------T-T-----------SCEEECSSHHHHHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhC--------c-C-----------CCeEEeCCHHHHHh
Confidence 35799999999999999999999999999999999877653211 0 0 124445555 3444
Q ss_pred ---CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhcccCC-CCcEEEEecCCCC---CCCCeeE
Q 004726 387 ---DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFSPA---HVMPLLE 457 (733)
Q Consensus 387 ---~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~~~ig~h~~~p~---~~~~lve 457 (733)
++|+||+|||....+ ..+++++.+.++++++|++.+++.+. ..+.+.+.. ...++++....++ ..++ .
T Consensus 65 ~l~~aDvVilavp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~ 141 (474)
T 2iz1_A 65 SLEKPRRIMLMVQAGAAT-DATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP--S 141 (474)
T ss_dssp TBCSSCEEEECCCTTHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC--C
T ss_pred hccCCCEEEEEccCchHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC--e
Confidence 499999999965554 45668888889889888876655543 344444432 2345544222111 1112 1
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCe--------eEEEcCC-CC----cchhhhh---HHHHHHHHHHHHc--CCCHHHHH
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKV--------PVVVGNC-TG----FAVNRAF---FPYSQSARLLVSL--GVDVFRID 519 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~--------~v~v~d~-pG----fi~nRl~---~~~~~Ea~~l~~~--Gv~~~dID 519 (733)
++++. +++..+.+.++++.+|.. +.++++. .| ++.|.+. ...+.|++.+.+. |++++++.
T Consensus 142 i~~gg--~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~ 219 (474)
T 2iz1_A 142 MMPGG--QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQ 219 (474)
T ss_dssp EEEEE--CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred EEecC--CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34443 789999999999999987 4555542 22 3456553 4567899998875 89999998
Q ss_pred HHHH
Q 004726 520 SAIR 523 (733)
Q Consensus 520 ~a~~ 523 (733)
.++.
T Consensus 220 ~l~~ 223 (474)
T 2iz1_A 220 AIFE 223 (474)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8873
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=133.96 Aligned_cols=183 Identities=15% Similarity=0.054 Sum_probs=122.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||+|||+|.||..+|..|++ |++|++||+++++++...+. | +..++..+.++++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-----------g-------------~~~~~~~~~~~~~ 56 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-----------F-------------GSEAVPLERVAEA 56 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-----------H-------------CCEECCGGGGGGC
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-----------C-------------CcccCHHHHHhCC
Confidence 579999999999999999999 99999999999887664221 1 1112222567899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEEecCCC-CC---CCCeeEEecC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSP-AH---VMPLLEIVRT 461 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~~~ig~h~~~p-~~---~~~lveiv~~ 461 (733)
|+||+|+|.+..++ .+++++.+.++++++|++.++..+ ...+.+.+.. ...++.. |..+ +. ...+..++.
T Consensus 57 D~vi~~v~~~~~~~-~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~- 133 (289)
T 2cvz_A 57 RVIFTCLPTTREVY-EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG- 133 (289)
T ss_dssp SEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE-
T ss_pred CEEEEeCCChHHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC-
Confidence 99999999554444 466788888888988874433322 2344444432 2234433 2111 10 112222333
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCCC-C----cchhhh---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGNCT-G----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~p-G----fi~nRl---~~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+++.++.+.+++ .+|..++++++.. + ++.|.+ +...++|++.+.+. |++++++..++
T Consensus 134 --~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 200 (289)
T 2cvz_A 134 --GPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVI 200 (289)
T ss_dssp --SCHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred --CCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHH
Confidence 3789999999999 9999888887632 2 223543 34567899888765 89999988887
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-12 Score=136.12 Aligned_cols=181 Identities=16% Similarity=0.095 Sum_probs=122.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH-HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|+|||+|.||.++|..|++.|++|+++|++++. .+.+. +.| +..+ +. +.++
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~-----------~~G-------------~~~~-~~~e~~~ 71 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHG-------------LKVA-DVKTAVA 71 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTT-------------CEEE-CHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHH-----------HCC-------------CEEc-cHHHHHh
Confidence 57999999999999999999999999999999765 33221 112 2223 33 5678
Q ss_pred CCCEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCCCCCHHHHhccc-CCCCcEEEEecCCCCCC---------CCe
Q 004726 387 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKT-SSQDRIIGAHFFSPAHV---------MPL 455 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~~~ig~h~~~p~~~---------~~l 455 (733)
+||+||+|+| ......++. ++.+.++++++|++. +++.+ .+.... .....+++.||..|.+. +..
T Consensus 72 ~aDvVilavp--~~~~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~ 147 (338)
T 1np3_A 72 AADVVMILTP--DEFQGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIP 147 (338)
T ss_dssp TCSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCC
T ss_pred cCCEEEEeCC--cHHHHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCe
Confidence 9999999999 555678888 888889999988865 44444 333322 12235999999776531 223
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCC-e--eEEEc----C-CCCcchhhhhH----HHHHHHH-HHHHcCCCHHHH
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKK-V--PVVVG----N-CTGFAVNRAFF----PYSQSAR-LLVSLGVDVFRI 518 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~-~--~v~v~----d-~pGfi~nRl~~----~~~~Ea~-~l~~~Gv~~~dI 518 (733)
+-++++..++++..+.+..+++.+|. . ++.+. + ...++.+..+. +++..++ .+++.|+++++.
T Consensus 148 ~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 148 DLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp EEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 33566667788999999999999998 4 55552 1 22343333322 2333333 335678877654
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-12 Score=131.26 Aligned_cols=138 Identities=14% Similarity=0.038 Sum_probs=107.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
++++++..+.+.++++.++... +-+|.|.-.++++. |....+. .......+.+ ..+..+++|+|++|
T Consensus 153 G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~Ga~~-g~~aE~~----------g~~~~~a~~l-~al~~~~vPvIavV 219 (339)
T 2f9y_A 153 GMPAPEGYRKALRLMQMAERFK-MPIITFIDTPGAYP-GVGAEER----------GQSEAIARNL-REMSRLGVPVVCTV 219 (339)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-SHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCcc-chHHHHH----------HHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 6899999999999999888664 55666654333222 2211110 1122333455 56899999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
+|.|.|||+.++++||+++|.++++|++ +.|.++++.++++..+...|.++ ..++|++|+++|+||+|+|
T Consensus 220 ~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~ 289 (339)
T 2f9y_A 220 IGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP 289 (339)
T ss_dssp EEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred eCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEec
Confidence 9999999999999999999999999997 46778888888888888888887 6799999999999999998
Q ss_pred c
Q 004726 186 S 186 (733)
Q Consensus 186 ~ 186 (733)
.
T Consensus 290 e 290 (339)
T 2f9y_A 290 E 290 (339)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=132.82 Aligned_cols=204 Identities=17% Similarity=0.161 Sum_probs=131.8
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH--------HHHHHHHhHhcCCCCHHHHHHHhhcccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG 378 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 378 (733)
+|.+|+|||+|.+|.++|.+|++.|++|+++|+|+++++...+. +...+.+.++. +++.+
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~------------g~l~~ 87 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSS------------GRLSF 87 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT------------TCEEE
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHc------------CCeeE
Confidence 57899999999999999999999999999999999998875321 11222222222 46788
Q ss_pred ccCc-cccCCCCEEEEeccC--------ChHHHHHHHHHHHHhCC---CCeEEEecCCCCCHHHHhcc----c---CCCC
Q 004726 379 VLDY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACP---PHCILATNTSTIDLNIVGEK----T---SSQD 439 (733)
Q Consensus 379 ~~~~-~~l~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~---~~~ii~s~tS~~~~~~l~~~----~---~~~~ 439 (733)
+++. +++++||++|.|||. |+.......+.+.+.++ ++.+|+. -||.++....+. + ....
T Consensus 88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~-eSTVppGtte~~~~~~l~~~~~~~ 166 (444)
T 3vtf_A 88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVV-KSTVPPGTTEGLVARAVAEEAGGV 166 (444)
T ss_dssp CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEE-CSCCCTTTTTTHHHHHHHTTTTTC
T ss_pred EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEE-eCCCCCchHHHHHHHHHHHhCCCC
Confidence 8887 668999999999974 44556666677776664 4556543 455544322211 1 1111
Q ss_pred cE-EEEecCCCCCCCCe---------eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc----CCCCcchhhhh---HHHH
Q 004726 440 RI-IGAHFFSPAHVMPL---------LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG----NCTGFAVNRAF---FPYS 502 (733)
Q Consensus 440 ~~-ig~h~~~p~~~~~l---------veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~----d~pGfi~nRl~---~~~~ 502 (733)
.| ++. +|-.+.+. --++.| .+++++.+.+.++++.+....+++. +...++.|-+. .+++
T Consensus 167 ~f~v~~---~PErl~eG~a~~d~~~~~riViG-~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~ 242 (444)
T 3vtf_A 167 KFSVAS---NPEFLREGSALEDFFKPDRIVIG-AGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFA 242 (444)
T ss_dssp CCEEEE---CCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cceeec---CcccccCCccccccccCCcEEEc-CCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHH
Confidence 22 222 33333221 012323 2468888999999988876655543 22335556442 5789
Q ss_pred HHHHHHHHc-CCCHHHHHHHH-H--hcCC
Q 004726 503 QSARLLVSL-GVDVFRIDSAI-R--SFGL 527 (733)
Q Consensus 503 ~Ea~~l~~~-Gv~~~dID~a~-~--~~G~ 527 (733)
||...+.+. |+++.+|-.++ . .+|+
T Consensus 243 NEla~ice~~GiDv~eV~~a~~~d~rig~ 271 (444)
T 3vtf_A 243 NEVGLLAKRLGVDTYRVFEAVGLDKRIGR 271 (444)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTSTTSCS
T ss_pred HHHHHHHHHcCCCHHHHHHHhccCCCCCC
Confidence 998777766 99999998887 3 4554
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=125.45 Aligned_cols=173 Identities=14% Similarity=0.096 Sum_probs=113.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeC--ChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~--~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
||+|||+|.||.++|..|+++|++|++||+ +++.++...+ .| +. ++. +.++
T Consensus 2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~-----------~g-------------~~--~~~~~~~~ 55 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART-----------VG-------------VT--ETSEEDVY 55 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-----------HT-------------CE--ECCHHHHH
T ss_pred eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHH-----------CC-------------Cc--CCHHHHHh
Confidence 799999999999999999999999999998 6666554311 12 12 233 5578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH---HHHhcccCCCCcEEEEecCCCCC---CCCeeEEec
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL---NIVGEKTSSQDRIIGAHFFSPAH---VMPLLEIVR 460 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~---~~l~~~~~~~~~~ig~h~~~p~~---~~~lveiv~ 460 (733)
+||+||+|||.+...+. +.++.+.+++ ++++ +|+..+ ..+.+.+.... ++..+.+.++. .... .++.
T Consensus 56 ~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~-~s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~~ 128 (264)
T 1i36_A 56 SCPVVISAVTPGVALGA--ARRAGRHVRG--IYVD-INNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIAS 128 (264)
T ss_dssp TSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEE-CSCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEEE
T ss_pred cCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEE-ccCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEec
Confidence 99999999996655433 3567666666 4444 345543 24555554433 66666655442 1222 3444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----chhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGf-----i~nRl~----~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
++. . +.+.+ ++.+|+.++++++.+|. ++|..+ ...++|++.+.+. |++++.+ ..+
T Consensus 129 g~~--~---~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~-~~~ 193 (264)
T 1i36_A 129 GRD--A---EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVL-EML 193 (264)
T ss_dssp STT--H---HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred CCc--H---HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHH
Confidence 432 2 67788 99999999988865664 233332 3557798887755 8987644 444
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=123.57 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=112.3
Q ss_pred eEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 310 kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
||+||| +|.||..++..|++.|++|+++|+++++.+...+.+.. .+.. ..+.. ++. +.+++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~~ 64 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAEA 64 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHhc
Confidence 799999 99999999999999999999999999887664332110 1110 11222 233 55788
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--------------HHHHhcccCCCCcEEEEecCCCC---
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--------------LNIVGEKTSSQDRIIGAHFFSPA--- 450 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--------------~~~l~~~~~~~~~~ig~h~~~p~--- 450 (733)
||+||+|+| .....+++.++.+.++ ++++++.++++. .+++++.+. ..+++..|+..+.
T Consensus 65 ~D~Vi~~~~--~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~v~~~~~~~~~~~ 140 (212)
T 1jay_A 65 CDIAVLTIP--WEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE-SEKVVSALHTIPAARF 140 (212)
T ss_dssp CSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT-CSCEEECCTTCCHHHH
T ss_pred CCEEEEeCC--hhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC-CCeEEEEccchHHHHh
Confidence 999999999 5556678888777664 888888887665 466666654 3678877643332
Q ss_pred ----CCCCeeEEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004726 451 ----HVMPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN 488 (733)
Q Consensus 451 ----~~~~lveiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d 488 (733)
....+..+++++ +++.++.+.++++.+ |+.++++++
T Consensus 141 ~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~ 181 (212)
T 1jay_A 141 ANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP 181 (212)
T ss_dssp HCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred hCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence 112245566665 689999999999999 999999976
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=134.89 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=127.9
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC--
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-- 386 (733)
||+|||+|.||.++|..|+++|++|++||+++++++...+. .|... . -..+..++++ +.++
T Consensus 3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~g~~~-~-----~~~i~~~~~~~e~v~~l 66 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA----------NASAP-F-----AGNLKAFETMEAFAASL 66 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------TTTST-T-----GGGEEECSCHHHHHHHB
T ss_pred EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCCC-C-----CCCeEEECCHHHHHhcc
Confidence 69999999999999999999999999999999987765321 01100 0 0124445555 3344
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEEecCCCCC---CCCeeEEe
Q 004726 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPAH---VMPLLEIV 459 (733)
Q Consensus 387 -~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~~~ig~h~~~p~~---~~~lveiv 459 (733)
++|+||+|||....+ ..+++++.+.++++++|++.+++.+. ..+.+.+. ....++++....++. .++ .++
T Consensus 67 ~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~i~ 143 (478)
T 1pgj_A 67 KKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP--AFF 143 (478)
T ss_dssp CSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC--EEE
T ss_pred cCCCEEEEecCChHHH-HHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC--eEe
Confidence 599999999965444 45568888889989888766555543 23444333 233455543222111 122 234
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCe-------eEEEcCC-CC----cchhhhh---HHHHHHHHHHHHc-CCCHHHHHHHHH
Q 004726 460 RTERTSAQVILDLMTVGKIIKKV-------PVVVGNC-TG----FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAIR 523 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~-------~v~v~d~-pG----fi~nRl~---~~~~~Ea~~l~~~-Gv~~~dID~a~~ 523 (733)
.+. +++..+.+.++++.+|.. ++++++. .| ++.|.+. ...++|++.+.+. |++++++..++.
T Consensus 144 ~gg--~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~ 221 (478)
T 1pgj_A 144 PGG--TLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE 221 (478)
T ss_dssp EEE--CHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccC--CHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 433 689999999999999987 5555542 12 2345443 3567899888765 899999988873
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=122.54 Aligned_cols=164 Identities=13% Similarity=0.102 Sum_probs=100.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH-HHHHH-HHHHHH-HHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGI-KTIEAN-VRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~-~~~~~-~~i~~~-l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
.+||+|||+|.||.+||..|+++|++|++||+++++ +.+.. ..+.+. +..+.+ ..+.+..++..+.
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~e~ 87 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLP-----------EHPHVHLAAFADV 87 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGG-----------GSTTCEEEEHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHh-----------hcCceeccCHHHH
Confidence 468999999999999999999999999999999986 11100 000000 001111 1122333333367
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHH-HHhCCCCeEEEecCCCC----------------CH-HHHhcccCCCCcEEE-Ee
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTSTI----------------DL-NIVGEKTSSQDRIIG-AH 445 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l-~~~~~~~~ii~s~tS~~----------------~~-~~l~~~~~~~~~~ig-~h 445 (733)
+++||+||+|||.+. ..+++.++ .+.+ ++++|++.+.++ .+ ..+++.++ ..+++. ++
T Consensus 88 ~~~aDvVilavp~~~--~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~-~~~vv~~~~ 163 (245)
T 3dtt_A 88 AAGAELVVNATEGAS--SIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP-EAKVVKTLN 163 (245)
T ss_dssp HHHCSEEEECSCGGG--HHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST-TSEEEECST
T ss_pred HhcCCEEEEccCcHH--HHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC-CCeEEEeec
Confidence 889999999999443 33566667 5555 677777655321 22 23444443 245553 44
Q ss_pred cCCCCC--------CCCeeEEecCCCCCHHHHHHHHHHHHHcCCe-eEEEcC
Q 004726 446 FFSPAH--------VMPLLEIVRTERTSAQVILDLMTVGKIIKKV-PVVVGN 488 (733)
Q Consensus 446 ~~~p~~--------~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~-~v~v~d 488 (733)
+...+. ..++.-++.+. +++..+.+.++++.+|.. ++.+++
T Consensus 164 ~~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~ 213 (245)
T 3dtt_A 164 TMNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGD 213 (245)
T ss_dssp TSCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred ccCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCc
Confidence 432111 12333344443 799999999999999976 477876
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=136.35 Aligned_cols=191 Identities=13% Similarity=0.066 Sum_probs=127.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc--
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-- 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-- 385 (733)
++|+|||+|.||.++|..|+++|++|++||+++++++...+. ...| ..+..++++ +.+
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~--------~~~g-----------~gi~~~~~~~e~v~~ 63 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN--------EAKG-----------TKVLGAHSLEEMVSK 63 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT--------TTTT-----------SSCEECSSHHHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc--------cccC-----------CCeEEeCCHHHHHhh
Confidence 369999999999999999999999999999999987764320 0001 124445555 333
Q ss_pred -CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecCCCCC---CCCeeEE
Q 004726 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI 458 (733)
Q Consensus 386 -~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~~p~~---~~~lvei 458 (733)
+++|+||+|||....+ ..++.++.+.++++++|++.+++.+.. .+.+.+. ....++++....++. ..+ .+
T Consensus 64 l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~--~i 140 (482)
T 2pgd_A 64 LKKPRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP--SL 140 (482)
T ss_dssp BCSSCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred ccCCCEEEEeCCChHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC--eE
Confidence 5899999999965544 456678888999888888766555432 3433332 233455543222111 112 23
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCee-------EEEcC-CCC----cchhhhh---HHHHHHHHHHHHc--CCCHHHHHHH
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKVP-------VVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRIDSA 521 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~-------v~v~d-~pG----fi~nRl~---~~~~~Ea~~l~~~--Gv~~~dID~a 521 (733)
+.+. +++..+.+.++++.+|..+ +++++ ..| ++.|.+. ...++|++.+.+. |++++++..+
T Consensus 141 ~~gg--~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~ 218 (482)
T 2pgd_A 141 MPGG--NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA 218 (482)
T ss_dssp EEEE--CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred EeCC--CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 4433 5778999999999999876 44443 222 3456553 4567899988864 8899999888
Q ss_pred HH
Q 004726 522 IR 523 (733)
Q Consensus 522 ~~ 523 (733)
+.
T Consensus 219 ~~ 220 (482)
T 2pgd_A 219 FE 220 (482)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-11 Score=120.21 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=100.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
.+||+|||+|.||.++|..|+++|++|++||++++ .+++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~~ 57 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATTL 57 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhcc
Confidence 46899999999999999999999999999998764 3578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC---------------HHHHhcccCCCCcEEE-EecCCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID---------------LNIVGEKTSSQDRIIG-AHFFSPAH 451 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---------------~~~l~~~~~~~~~~ig-~h~~~p~~ 451 (733)
||+||+|+| ....+.+++++.+.++ ++++++.+++++ ...+++.++ ..+++. .|+...|.
T Consensus 58 aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p~ 133 (209)
T 2raf_A 58 GEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAAT 133 (209)
T ss_dssp CSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHHH
T ss_pred CCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHhh
Confidence 999999999 6666788888887777 888887777554 234444443 356777 56543221
Q ss_pred C--------CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 452 V--------MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 452 ~--------~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
. .+...++.+ .+++..+.+.++++.+|.+++.+++
T Consensus 134 ~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~ 176 (209)
T 2raf_A 134 LQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK 176 (209)
T ss_dssp HHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred ccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence 1 122222333 3689999999999999999998887
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.4e-11 Score=128.81 Aligned_cols=169 Identities=12% Similarity=0.016 Sum_probs=104.0
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
|+||+|||+|.||.++|..|+++|++|++||+++++++...+.. ......... .....+..+++. ++++
T Consensus 15 M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~ 84 (366)
T 1evy_A 15 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKR-------ENVLFLKGV---QLASNITFTSDVEKAYN 84 (366)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHT-------BCTTTSTTC---BCCTTEEEESCHHHHHT
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC-------ccccccccc---ccccceeeeCCHHHHHc
Confidence 45899999999999999999999999999999998876643210 000000000 000134445555 5578
Q ss_pred CCCEEEEeccCChHHHHHHHHH----HHHhCCC-CeEEEecCCCCCHHH---HhcccCC--CC-c-EEEEecCCCCC--C
Q 004726 387 DVDMVIEAVIESVPLKQKIFSE----LEKACPP-HCILATNTSTIDLNI---VGEKTSS--QD-R-IIGAHFFSPAH--V 452 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~----l~~~~~~-~~ii~s~tS~~~~~~---l~~~~~~--~~-~-~ig~h~~~p~~--~ 452 (733)
+||+||+||| .....+++.+ +.+.+++ +++|++.++++.+.. +.+.+.. +. . .+...|..+.. .
T Consensus 85 ~aDvVilav~--~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~ 162 (366)
T 1evy_A 85 GAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVAT 162 (366)
T ss_dssp TCSSEEECCC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHT
T ss_pred CCCEEEECCC--hHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHh
Confidence 9999999999 5677788888 8888887 888887776665531 1111111 11 1 11111111110 0
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCC
Q 004726 453 MPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNC 489 (733)
Q Consensus 453 ~~lveiv~~~~t~~e~~~~~~~l~~~l--G~~~v~v~d~ 489 (733)
.....++.+ ..+++..+.+.+++... |..+++..|.
T Consensus 163 g~~~~~~~~-~~~~~~~~~v~~ll~~~g~g~~~~~~~di 200 (366)
T 1evy_A 163 GVFTCVSIA-SADINVARRLQRIMSTGDRSFVCWATTDT 200 (366)
T ss_dssp TCCEEEEEE-CSSHHHHHHHHHHHSCTTSSEEEEEESCH
T ss_pred CCceEEEEe-cCCHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence 111112222 23678899999999999 7776666654
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-11 Score=121.99 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=100.3
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.++||+|||+|.||..+|..|++.|++|+++|+++++++... +.| +..++..+.++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~~~~ 82 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF-----------PSA-------------AQVTFQEEAVS 82 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHS-----------BTT-------------SEEEEHHHHTT
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CceecHHHHHh
Confidence 346899999999999999999999999999999988765431 111 22222225678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh----------cccCCCCcEEEEecCCCCC-----
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----------EKTSSQDRIIGAHFFSPAH----- 451 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----------~~~~~~~~~ig~h~~~p~~----- 451 (733)
++|+||+|+|. .....+++ +.... ++++|++.+++.+++.+. +.+. ..+++.. + ++..
T Consensus 83 ~~DvVi~av~~--~~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~-~-n~~~~~~~~ 155 (215)
T 2vns_A 83 SPEVIFVAVFR--EHYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKA-F-NVISAWTLQ 155 (215)
T ss_dssp SCSEEEECSCG--GGSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEE-C-TTBCHHHHH
T ss_pred CCCEEEECCCh--HHHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEec-c-ccccHhHhc
Confidence 99999999994 33444554 55555 788888888888765542 2232 2345442 1 2211
Q ss_pred ----CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 452 ----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 452 ----~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
..+...++.+ .+++.++.+.++++.+|..++++++
T Consensus 156 ~~~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~ 194 (215)
T 2vns_A 156 AGPRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS 194 (215)
T ss_dssp TCSCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred ccccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence 1111122232 3799999999999999999999876
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-11 Score=127.21 Aligned_cols=122 Identities=17% Similarity=0.246 Sum_probs=88.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+||+|||+|.||.++|..++..|+ +|++||+++++++.....+....... ....++..+++++++++
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al~~ 82 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALI------------GSPAKIFGENNYEYLQN 82 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHH------------TCCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhcc------------CCCCEEEECCCHHHHCC
Confidence 489999999999999999999999 99999999998886443333322211 01246777788889999
Q ss_pred CCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCeEE--EecCCCCCHHHHhcccC--CCCcEEEE
Q 004726 388 VDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIGA 444 (733)
Q Consensus 388 aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~--~~~~~ig~ 444 (733)
||+||+++ |+ +..+++++++++.+++ +++++ +||++... +.++.... .|.|++|+
T Consensus 83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~ 155 (328)
T 2hjr_A 83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM 155 (328)
T ss_dssp CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence 99999998 54 4578999999999998 55554 46654432 33333222 46677774
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-10 Score=122.71 Aligned_cols=198 Identities=18% Similarity=0.169 Sum_probs=121.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcC-CCCHHHHHHHh----hccccccCc-c
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNAL----KMLKGVLDY-S 383 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~----~~i~~~~~~-~ 383 (733)
||+|||+|.||.++|..|++ |++|++||+++++++...+ .+ .+.....+..+ .++.+++++ +
T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~-----------~~~~i~e~~l~~~~~~~~~~l~~t~~~~~ 69 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINN-----------GLSPIQDEYIEYYLKSKQLSIKATLDSKA 69 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHT-----------TCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHc-----------CCCCcCCCCHHHHHHhccCcEEEeCCHHH
Confidence 79999999999999999999 9999999999998776422 11 11111111111 245666665 6
Q ss_pred ccCCCCEEEEeccCCh---------HHHHHHHHHHHHhCCCCeEEEe-cCCCCCH-HHHhcccCCCCcEEEEec--CCCC
Q 004726 384 EFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILAT-NTSTIDL-NIVGEKTSSQDRIIGAHF--FSPA 450 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~---------~~k~~v~~~l~~~~~~~~ii~s-~tS~~~~-~~l~~~~~~~~~~ig~h~--~~p~ 450 (733)
++++||+||.|||... ....++++.+.+ ++++++|+. +|..... ..+.+.+.. ..+...| ..|.
T Consensus 70 ~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~--~~v~~~Pe~~~~G 146 (402)
T 1dlj_A 70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQT--DRIIFSPEFLRES 146 (402)
T ss_dssp HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTC--SCEEECCCCCCTT
T ss_pred HhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCC--CeEEECCccccCc
Confidence 6889999999999763 256677788888 788888764 3322222 244443332 2222222 1111
Q ss_pred CCC-Cee---EEecCCCCC-----HHHHHHHHHHHHH-cCC-e-eEEEcCCC-----Ccchhhh---hHHHHHHHHHHHH
Q 004726 451 HVM-PLL---EIVRTERTS-----AQVILDLMTVGKI-IKK-V-PVVVGNCT-----GFAVNRA---FFPYSQSARLLVS 510 (733)
Q Consensus 451 ~~~-~lv---eiv~~~~t~-----~e~~~~~~~l~~~-lG~-~-~v~v~d~p-----Gfi~nRl---~~~~~~Ea~~l~~ 510 (733)
... ... .++.|.... .+..+.+.+++.. ... . ++++++.. .++.|-+ ..+++||+..+.+
T Consensus 147 ~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~ 226 (402)
T 1dlj_A 147 KALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAE 226 (402)
T ss_dssp STTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 000 133333221 1556777777765 322 2 56665522 3444543 2467899888886
Q ss_pred c-CCCHHHHHHHH
Q 004726 511 L-GVDVFRIDSAI 522 (733)
Q Consensus 511 ~-Gv~~~dID~a~ 522 (733)
. |+++.++-.++
T Consensus 227 ~~Gid~~~v~~~~ 239 (402)
T 1dlj_A 227 SRKLNSHMIIQGI 239 (402)
T ss_dssp HTTCCHHHHHHHH
T ss_pred HhCCCHHHHHHHh
Confidence 6 99999999888
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.9e-11 Score=124.26 Aligned_cols=123 Identities=20% Similarity=0.302 Sum_probs=87.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
++||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+...+... ....++..++++++++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al~ 71 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMA------------YSNCKVSGSNTYDDLA 71 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHH------------TCCCCEEEECCGGGGT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhc------------CCCcEEEECCCHHHhC
Confidence 4689999999999999999999998 99999999998876544443332211 0123566777888999
Q ss_pred CCCEEEEec--cCCh-----------------HHHHHHHHHHHHhCCCCeEE--EecCCCCCHHHHhcccC--CCCcEEE
Q 004726 387 DVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIG 443 (733)
Q Consensus 387 ~aDlVI~av--pe~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~--~~~~~ig 443 (733)
+||+||+++ |+++ .+++++++++.+++ +++++ +||.+.+. +.+..... .+.|++|
T Consensus 72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rviG 149 (322)
T 1t2d_A 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKIIG 149 (322)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEEe
Confidence 999999998 6532 47899999999998 56654 45554443 33333222 4567766
Q ss_pred E
Q 004726 444 A 444 (733)
Q Consensus 444 ~ 444 (733)
+
T Consensus 150 ~ 150 (322)
T 1t2d_A 150 L 150 (322)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=125.36 Aligned_cols=154 Identities=11% Similarity=0.050 Sum_probs=109.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC------CCeeEEEeCChH-HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN------NIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~------G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
++||+|||+|.||.++|..|.++ |++|++.+++.+ ..+.+ .+.|.... -....
T Consensus 54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A-----------~e~G~~v~---------d~ta~ 113 (525)
T 3fr7_A 54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEA-----------RAAGFTEE---------SGTLG 113 (525)
T ss_dssp CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCTT---------TTCEE
T ss_pred CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHH-----------HHCCCEEe---------cCCCC
Confidence 36899999999999999999999 999987766543 33322 12221100 00012
Q ss_pred Cc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc---ccCCCCcEEEEecCCCCCC----
Q 004726 381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSPAHV---- 452 (733)
Q Consensus 381 ~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~---~~~~~~~~ig~h~~~p~~~---- 452 (733)
+. +++++||+||.++| +.....++.++.+.++++++| +.++++.+..+.+ .......++.+||..|.+.
T Consensus 114 s~aEAa~~ADVVILaVP--~~~~~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~ 190 (525)
T 3fr7_A 114 DIWETVSGSDLVLLLIS--DAAQADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRL 190 (525)
T ss_dssp EHHHHHHHCSEEEECSC--HHHHHHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHH
T ss_pred CHHHHHhcCCEEEECCC--hHHHHHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHH
Confidence 33 67899999999999 454557888999999999985 6788888877664 3333457999999988874
Q ss_pred ---C-----Cee--EEecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004726 453 ---M-----PLL--EIVRTERTSAQVILDLMTVGKIIKKVPV 484 (733)
Q Consensus 453 ---~-----~lv--eiv~~~~t~~e~~~~~~~l~~~lG~~~v 484 (733)
+ ..+ -+..+...+.+..+.+..++..+|...+
T Consensus 191 y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v 232 (525)
T 3fr7_A 191 YVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT 232 (525)
T ss_dssp HHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred HhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence 1 112 2334455677889999999999998753
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=125.89 Aligned_cols=169 Identities=16% Similarity=0.031 Sum_probs=106.2
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC-------CeeEEEeCChH-----HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNALKM 375 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~e-----~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~ 375 (733)
++||+|||+|.||+++|..|+++| ++|++||++++ ..+...+. .......+. ......
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~--------~~~~~~~~~--~~~~~~ 77 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQ--------HENVKYLPG--HKLPPN 77 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHH--------SCCTTTSTT--CCCCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhc--------CcccccCCc--ccCccC
Confidence 458999999999999999999999 99999999987 65543210 000000000 000123
Q ss_pred cccccCc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--------HH-HhcccCCCCcEEEEe
Q 004726 376 LKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NI-VGEKTSSQDRIIGAH 445 (733)
Q Consensus 376 i~~~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--------~~-l~~~~~~~~~~ig~h 445 (733)
+..+++. +++++||+||+||| .....++++++.+.++++++|++.++++.+ .+ +.+.+..+ ..+-..
T Consensus 78 ~~~~~~~~~~~~~aD~Vilav~--~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v~~g 154 (354)
T 1x0v_A 78 VVAVPDVVQAAEDADILIFVVP--HQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-MSVLMG 154 (354)
T ss_dssp EEEESSHHHHHTTCSEEEECCC--GGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-EEEEEC
T ss_pred eEEEcCHHHHHcCCCEEEEeCC--HHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-EEEEEC
Confidence 4555565 56789999999999 456788899999889999999888876653 11 11222211 111222
Q ss_pred cCCCCC--CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004726 446 FFSPAH--VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT 490 (733)
Q Consensus 446 ~~~p~~--~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~p 490 (733)
|..+.. ......++.+ ..+++..+.+.+++...|..+.+..|..
T Consensus 155 p~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~ 200 (354)
T 1x0v_A 155 ANIASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQEVD 200 (354)
T ss_dssp SCCHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESCHH
T ss_pred CCcHHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCCch
Confidence 221111 0111112222 2468889999999999998877776643
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=125.37 Aligned_cols=169 Identities=11% Similarity=-0.015 Sum_probs=107.2
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC-------CeeEEEeCChH-----HHHHHHHHHHHHHHHhHhcC-CCCHHHHHHHhh
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRG-KLTQDKANNALK 374 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~e-----~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~~ 374 (733)
++||+|||+|.||++||..|+++| ++|++||++++ .++...+. .... .+... ....
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~--------~~~~~~~~~~---~~~~ 89 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNK--------HENTKYLKGV---PLPH 89 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHH--------CBCTTTSTTC---BCCT
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhc--------CcccccCCcc---cCcC
Confidence 358999999999999999999999 99999999987 54443210 0000 00000 0012
Q ss_pred ccccccCc-cccCCCCEEEEeccCChHHHHHHHHHHHH----hCCCCeEEEecCCCCCHH-----HH----hcccCCCCc
Q 004726 375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK----ACPPHCILATNTSTIDLN-----IV----GEKTSSQDR 440 (733)
Q Consensus 375 ~i~~~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~----~~~~~~ii~s~tS~~~~~-----~l----~~~~~~~~~ 440 (733)
.+..+++. +++++||+||+||| .....+++.++.+ .++++++|++.++++.+. .+ .+....+ .
T Consensus 90 ~i~~~~~~~ea~~~aDvVilav~--~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~-~ 166 (375)
T 1yj8_A 90 NIVAHSDLASVINDADLLIFIVP--CQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIP-C 166 (375)
T ss_dssp TEEEESSTHHHHTTCSEEEECCC--HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSC-E
T ss_pred CeEEECCHHHHHcCCCEEEEcCC--HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCC-E
Confidence 35556666 56789999999999 5788889999988 888899998888776541 11 1212111 1
Q ss_pred EEEEecCCCCC--CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 441 IIGAHFFSPAH--VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 441 ~ig~h~~~p~~--~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
.+-..|..+.. ......++.+ ..+++..+.+.+++...|..+.+..|..|
T Consensus 167 ~v~~gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~ 218 (375)
T 1yj8_A 167 SALSGANIAMDVAMENFSEATIG-GNDKDSLVIWQRVFDLPYFKINCVNETIE 218 (375)
T ss_dssp EEEECSCCHHHHHTTCCEEEEEE-CSCHHHHHHHHHHHCBTTEEEEEESCSHH
T ss_pred EEEeCCchHHHHHhCCCeEEEEe-cCCHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence 11111211110 0111112222 23678899999999999988888777543
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.9e-11 Score=123.01 Aligned_cols=168 Identities=10% Similarity=-0.053 Sum_probs=106.7
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||+++|..|+++|++|++||+++++++.. ...+.-. . .....+. .++.+.++++|
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~~~-~---~~~~~~~-~~~~~~~~~~d 65 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETDG-S---IFNESLT-ANDPDFLATSD 65 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTTS-C---EEEEEEE-ESCHHHHHTCS
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcCCC-c---eeeeeee-ecCccccCCCC
Confidence 79999999999999999999999999999998654321 1111000 0 0000111 23345678899
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhcccCCCCcEE-EEecCCCCCCCC-e-------eEEe
Q 004726 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHFFSPAHVMP-L-------LEIV 459 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~~~i-g~h~~~p~~~~~-l-------veiv 459 (733)
+||.|+|.. ...++++++.+.++++++|++.++++... .+.+.+. . ++ |.++......+| . +.+.
T Consensus 66 ~vi~~v~~~--~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p~~~~~~~g~~~i~ 140 (291)
T 1ks9_A 66 LLLVTLKAW--QVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGNVIIHVANGITHIG 140 (291)
T ss_dssp EEEECSCGG--GHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETTEEEEEECCCEEEE
T ss_pred EEEEEecHH--hHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCCEEEEecccceEEc
Confidence 999999954 35788889999898898888777776553 3444332 2 44 433321111111 1 1122
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhH
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF 499 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~ 499 (733)
... .+++.++.+.++++.+|..+.+.++..+...+.+..
T Consensus 141 ~~~-~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~ 179 (291)
T 1ks9_A 141 PAR-QQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAV 179 (291)
T ss_dssp ESS-GGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHH
T ss_pred cCC-CCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHee
Confidence 211 245678889999999999888887765555555543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-10 Score=123.01 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=88.1
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcc-cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l 385 (733)
.+||+|||+|.||.++|..|+..|+ +|++||+++++++.....+...+..+ + ...++..+++++ ++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~---------~~~~i~~t~d~~ea~ 76 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSYEAAL 76 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C---------CCCEEEEeCCHHHHh
Confidence 3589999999999999999999998 99999999998887544443332211 1 113577778885 89
Q ss_pred CCCCEEEEec--cCCh-----------------HHHHHHHHHHHHhCCCCeEE--EecCCCCCHHHHhccc-C-CCCcEE
Q 004726 386 KDVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKT-S-SQDRII 442 (733)
Q Consensus 386 ~~aDlVI~av--pe~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~-~-~~~~~i 442 (733)
++||+||+++ |+++ .+++++++++.+++ +++++ +||.+.+. +.+.... . .+.|++
T Consensus 77 ~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rvi 154 (331)
T 1pzg_A 77 TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMIC 154 (331)
T ss_dssp TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred CCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEE
Confidence 9999999999 7543 45889999999998 56655 45555443 3333222 2 456777
Q ss_pred EE
Q 004726 443 GA 444 (733)
Q Consensus 443 g~ 444 (733)
|+
T Consensus 155 G~ 156 (331)
T 1pzg_A 155 GM 156 (331)
T ss_dssp EC
T ss_pred ec
Confidence 75
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.7e-10 Score=117.42 Aligned_cols=159 Identities=13% Similarity=0.022 Sum_probs=92.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
.||+|||+|.||+.+|..|+++|++|++||+++++++...+ .|... ......+ .+..+++.+.++++
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~-----------~g~~~-~~~~~~~-~~~~~~~~~~~~~a 81 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINV-----------SHTSP-YVEESKI-TVRATNDLEEIKKE 81 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------HSCBT-TBTTCCC-CSEEESCGGGCCTT
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------hCCcc-cCCCCee-eEEEeCCHHHhcCC
Confidence 48999999999999999999999999999999988765422 11000 0000000 24455565338899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH---HhcccC--CCC-cEEEEecCCCCC--CCCeeEEec
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTS--SQD-RIIGAHFFSPAH--VMPLLEIVR 460 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~--~~~-~~ig~h~~~p~~--~~~lveiv~ 460 (733)
|+||.||| .....+++.++.+ +++++++.+.++.+.+ +++.+. .+. ..+...|..+.. .+....++.
T Consensus 82 DvVil~vk--~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~ 156 (335)
T 1z82_A 82 DILVIAIP--VQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTL 156 (335)
T ss_dssp EEEEECSC--GGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEE
T ss_pred CEEEEECC--HHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEE
Confidence 99999999 3445555555433 6777776665554421 221111 011 111122221111 111112222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004726 461 TERTSAQVILDLMTVGKIIKKVPVVVGNC 489 (733)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~ 489 (733)
+.. + .+.+.+++...|..+.+..|.
T Consensus 157 g~~-~---~~~~~~ll~~~g~~~~~~~di 181 (335)
T 1z82_A 157 AGE-N---SKELQKRISTEYFRVYTCEDV 181 (335)
T ss_dssp EET-T---HHHHHHHHCCSSEEEEEESCH
T ss_pred Eeh-h---HHHHHHHhCCCCEEEEecCch
Confidence 221 2 678899999888887776653
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.9e-10 Score=117.96 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=101.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC-----C-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHH-HHHhhcccccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN-----N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-NNALKMLKGVL 380 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~-----G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~-~~~~~~i~~~~ 380 (733)
.+||+|||+|.||+.+|..|+++ | ++|++||+ +++++...+. .|....... ......+..++
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~ 76 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAA----------GGLRVVTPSRDFLARPTCVTD 76 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHH----------TSEEEECSSCEEEECCSEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhc----------CCeEEEeCCCCeEEecceEec
Confidence 35899999999999999999999 9 99999999 7665543210 111000000 00000122234
Q ss_pred CccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-HHHhcccCCCCcEE-EEecCCCCCC------
Q 004726 381 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHV------ 452 (733)
Q Consensus 381 ~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~~~i-g~h~~~p~~~------ 452 (733)
+.+.+.++|+||.|||... ..++++++.+.++++++|++.+.++.. ..+.+.+... +++ |+.+...+..
T Consensus 77 ~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~-~v~~g~~~~~a~~~~pg~~~ 153 (317)
T 2qyt_A 77 NPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDT-VVWKGCVYISARKSAPGLIT 153 (317)
T ss_dssp CHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTT-TBCEEEEEEEEEEEETTEEE
T ss_pred CccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCC-cEEEEEEEEEEEEcCCCEEE
Confidence 4456789999999998544 367788888888888888877777766 3455555432 222 3222111111
Q ss_pred --CCeeEE-ecC--CCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 453 --MPLLEI-VRT--ERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 453 --~~lvei-v~~--~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
.....+ +.. ...+++.+ .+.++++..|....+.++
T Consensus 154 ~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~d 193 (317)
T 2qyt_A 154 LEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTD 193 (317)
T ss_dssp EEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSC
T ss_pred EcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchH
Confidence 111112 322 33457777 899999999987766665
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-10 Score=118.96 Aligned_cols=162 Identities=14% Similarity=0.060 Sum_probs=102.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeC--ChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhcccccc--Cc-c
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVL--DY-S 383 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~--~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~--~~-~ 383 (733)
||+|||+|.||.++|..|+++|++|++||+ ++++++... +.+. +... . . +..+..++ ++ +
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~g-~-~-~~~~~~~~~~~~~~ 67 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS-----------AGREHPRLG-V-K-LNGVEIFWPEQLEK 67 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH-----------TTCCBTTTT-B-C-CCSEEEECGGGHHH
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHH-----------HhCcCcccC-c-c-ccceEEecHHhHHH
Confidence 799999999999999999999999999999 888766532 1121 0000 0 0 01223344 44 4
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC---C---HHHHhcccCC--CCcEEEEecCCCCCC---
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI---D---LNIVGEKTSS--QDRIIGAHFFSPAHV--- 452 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~---~~~l~~~~~~--~~~~ig~h~~~p~~~--- 452 (733)
.+++||+||.|+|.. ....++.++.+ ++++++|++.+.++ + ...+.+.+.. +..........|...
T Consensus 68 ~~~~~D~vi~~v~~~--~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~ 144 (335)
T 1txg_A 68 CLENAEVVLLGVSTD--GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV 144 (335)
T ss_dssp HHTTCSEEEECSCGG--GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH
T ss_pred HHhcCCEEEEcCChH--HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH
Confidence 578999999999944 56788888888 88888887766565 2 2344443332 110001111222221
Q ss_pred --CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004726 453 --MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489 (733)
Q Consensus 453 --~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~ 489 (733)
.....++.+. .+++..+.+.++++..|..+.+..|.
T Consensus 145 ~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di 182 (335)
T 1txg_A 145 AKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDI 182 (335)
T ss_dssp HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCH
T ss_pred HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCch
Confidence 1111233332 36888999999999999887777664
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.9e-10 Score=117.29 Aligned_cols=118 Identities=23% Similarity=0.293 Sum_probs=81.6
Q ss_pred CCCCcceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC
Q 004726 304 KPRGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (733)
Q Consensus 304 ~~~~~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (733)
..++++||+|||+|.||.++|..++..|+ +|+++|++++....+.+... .. ..++..+++
T Consensus 10 ~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~------~~------------~~~i~~t~d 71 (303)
T 2i6t_A 10 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEI------FN------------LPNVEISKD 71 (303)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHH------HT------------CTTEEEESC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhh------hc------------CCCeEEeCC
Confidence 34556899999999999999999999999 99999999873333322110 00 025666778
Q ss_pred ccccCCCCEEEEec-------------cCChHHHHHHHHHHHHhCCCCeEE--EecCCCCCHHHHhccc----C-CCCcE
Q 004726 382 YSEFKDVDMVIEAV-------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKT----S-SQDRI 441 (733)
Q Consensus 382 ~~~l~~aDlVI~av-------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~----~-~~~~~ 441 (733)
++++++||+||+++ .++..+++++++++.+++ +++++ +||. +..+...+ . .+.|+
T Consensus 72 ~~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP----~~~~t~~~~~~~~~p~~rv 146 (303)
T 2i6t_A 72 LSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQP----VEIMTYVTWKLSTFPANRV 146 (303)
T ss_dssp GGGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSS----HHHHHHHHHHHHCCCGGGE
T ss_pred HHHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCCh----HHHHHHHHHHhcCCCHHHe
Confidence 89999999999997 889999999999999998 55554 4553 33333332 2 24577
Q ss_pred EEE
Q 004726 442 IGA 444 (733)
Q Consensus 442 ig~ 444 (733)
+|+
T Consensus 147 iG~ 149 (303)
T 2i6t_A 147 IGI 149 (303)
T ss_dssp EEC
T ss_pred eCC
Confidence 775
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=8.2e-10 Score=116.95 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=102.7
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+...+. .. . ..++.. ++.+++++
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~----~~--~-------~~~i~~-~d~~~~~~ 67 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP----FT--R-------RANIYA-GDYADLKG 67 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG----GS--C-------CCEEEE-CCGGGGTT
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh----hc--C-------CcEEEe-CCHHHhCC
Confidence 79999999999999999999999 999999999887764333222111 00 0 013333 35678899
Q ss_pred CCEEEEeccCC--------------hHHHHHHHHHHHHhCCCCeEEE--ecCCCCCHHHHhcc-cC-CCCcEEEEecCCC
Q 004726 388 VDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEK-TS-SQDRIIGAHFFSP 449 (733)
Q Consensus 388 aDlVI~avpe~--------------~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~-~~-~~~~~ig~h~~~p 449 (733)
||+||++++.. ..+++++++++.++++ +++++ +|.+... +.+... .. .+.|++|+
T Consensus 68 aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG~----- 140 (319)
T 1a5z_A 68 SDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVL-TYFFLKESGMDPRKVFGS----- 140 (319)
T ss_dssp CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHH-HHHHHHHHTCCTTTEEEC-----
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCcHHHH-HHHHHHHhCCChhhEEee-----
Confidence 99999999852 2467888899998874 55443 4433321 233322 22 45677775
Q ss_pred CCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchh---hhhHHHHH
Q 004726 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN---RAFFPYSQ 503 (733)
Q Consensus 450 ~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~n---Rl~~~~~~ 503 (733)
.|..++......+.+.+|..+ .+.++++.+ ..++++++
T Consensus 141 -------------~t~ld~~r~~~~la~~lgv~~---~~v~~~v~G~hg~~~~p~~s 181 (319)
T 1a5z_A 141 -------------GTVLDTARLRTLIAQHCGFSP---RSVHVYVIGEHGDSEVPVWS 181 (319)
T ss_dssp -------------TTHHHHHHHHHHHHHHHTCCG---GGEECCEEBCSSTTCEECGG
T ss_pred -------------CccHHHHHHHHHHHHHhCcCH---HHceEEEEeCCCCCcccchh
Confidence 356677777777788888544 455566665 44444433
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.6e-09 Score=112.05 Aligned_cols=172 Identities=16% Similarity=0.103 Sum_probs=111.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++||+|||+|.||+.+|..|+++|++|++| ++++.++...+. ...-.+. . ......+..+++.+.+++
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~------g~~~~~~-~----~~~~~~~~~~~~~~~~~~ 86 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEAT------GLRLETQ-S----FDEQVKVSASSDPSAVQG 86 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH------CEEEECS-S----CEEEECCEEESCGGGGTT
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC------CeEEEcC-C----CcEEEeeeeeCCHHHcCC
Confidence 468999999999999999999999999999 998887664321 0000000 0 000123445566667789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhcccCCCCcEEEEe------cCCCCCC---CCeeE
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAH------FFSPAHV---MPLLE 457 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~~~ig~h------~~~p~~~---~~lve 457 (733)
+|+||.|||. ....++++++.+.++++++|++.+.++... .+.+.+. .++++.. ...|-.. ... .
T Consensus 87 ~D~vilavk~--~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g-~ 161 (318)
T 3hwr_A 87 ADLVLFCVKS--TDTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRG-E 161 (318)
T ss_dssp CSEEEECCCG--GGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEE-E
T ss_pred CCEEEEEccc--ccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCc-e
Confidence 9999999994 456788899999999999999999998874 5555554 4444321 1112111 111 1
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhH
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF 499 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~ 499 (733)
++-+. .+..+.+.+++...|....+..|.-+.....++.
T Consensus 162 ~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~ 200 (318)
T 3hwr_A 162 LVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLIL 200 (318)
T ss_dssp EEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHH
T ss_pred EEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHH
Confidence 12222 2345678888888887777767765555555443
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-09 Score=113.20 Aligned_cols=168 Identities=11% Similarity=0.142 Sum_probs=103.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++||+|||+|.||+.+|..|+++|++|++|+++ +.++... +.|......-......+..+++.+.+++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQ-----------TAGLRLTEDGATHTLPVRATHDAAALGE 70 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHH-----------HTCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHH-----------HCCCEEecCCCeEEEeeeEECCHHHcCC
Confidence 468999999999999999999999999999995 4444321 1221000000000012334556656789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC-------------------HH-HHhcccCCCCcEEEE-ec
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-------------------LN-IVGEKTSSQDRIIGA-HF 446 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-------------------~~-~l~~~~~~~~~~ig~-h~ 446 (733)
+|+||.||| .....++++++.+.++++++|++...+++ .. .+.+.++ ..++++. -+
T Consensus 71 ~D~Vilavk--~~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~~v~~gv~~ 147 (335)
T 3ghy_A 71 QDVVIVAVK--APALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP-TRHVLGCVVH 147 (335)
T ss_dssp CSEEEECCC--HHHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC-GGGEEEEEEC
T ss_pred CCEEEEeCC--chhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC-cccEEEEEEE
Confidence 999999999 45666888888888889998888777753 11 2333332 2344432 22
Q ss_pred C-----CCCC---CCCeeEEecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 447 F-----SPAH---VMPLLEIVRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 447 ~-----~p~~---~~~lveiv~~--~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
. .|-. .... .++-| ...+.+..+.+.+++...|.......|.-+
T Consensus 148 ~~a~~~~pg~v~~~~~g-~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 201 (335)
T 3ghy_A 148 LTCATVSPGHIRHGNGR-RLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQR 201 (335)
T ss_dssp CCEEESSTTEEEECSCC-EEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHH
T ss_pred EEEEEcCCcEEEECCCC-eEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHH
Confidence 1 1111 1111 12222 223457788899999998887777677555
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-10 Score=114.70 Aligned_cols=148 Identities=14% Similarity=0.161 Sum_probs=97.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||+|||+|.||..+|..|.+.|++|++||++++ .+.. ...| +...+..+.++++
T Consensus 20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~-----------~~~g-------------~~~~~~~~~~~~a 74 (201)
T 2yjz_A 20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSL-----------LPRG-------------AEVLCYSEAASRS 74 (201)
Confidence 4799999999999999999999999999999876 3221 0111 1122222567899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--------HHHhcccCCCCcEEEEecCCCCCCCC-ee---
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NIVGEKTSSQDRIIGAHFFSPAHVMP-LL--- 456 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--------~~l~~~~~~~~~~ig~h~~~p~~~~~-lv--- 456 (733)
|+||.|+|.. ....++ ++.. ..++++|++.+++++. ..+.+.+.. .+++...++.|..... ..
T Consensus 75 DvVilav~~~--~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~g 149 (201)
T 2yjz_A 75 DVIVLAVHRE--HYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLDA 149 (201)
Confidence 9999999943 334444 4443 3467777776666653 333333322 3455554444443322 11
Q ss_pred ---EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 457 ---EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 457 ---eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
.++.+. +++..+.+.++++.+|+.++.+++
T Consensus 150 ~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~ 182 (201)
T 2yjz_A 150 SRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS 182 (201)
Confidence 233443 578899999999999999999876
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.5e-09 Score=102.61 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.++..+.+.+.+.|..++.++.++.|+|. +-| +++. ....++ +.|..+++||++.
T Consensus 35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG------G~v~----------------a~~~I~-~~i~~~~~pV~~~ 91 (208)
T 2cby_A 35 EVNDEIANRLCAQILLLAAEDASKDISLYINSPG------GSIS----------------AGMAIY-DTMVLAPCDIATY 91 (208)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHH----------------HHHHHH-HHHHHCSSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence 48889999999999999877667776663 322 2211 123455 6688899999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhh------------------hhhccccC--HHHHHHH
Q 004726 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIEM 162 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~------------------~~l~r~~G--~~~a~~l 162 (733)
+.|.|.++|..++++||. |++.+++.++.....-|. .|-. ..+.+..| .....++
T Consensus 92 v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~ 168 (208)
T 2cby_A 92 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEAD 168 (208)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 999999999999999999 999999999987654221 1110 11222223 3445668
Q ss_pred HHcCCCCCHHHHHHcCCccEEcC-cchHHHHH
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVT-SEELLKVS 193 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~-~~~l~~~a 193 (733)
+..|..++++||+++||||++.+ .+++++..
T Consensus 169 ~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~ 200 (208)
T 2cby_A 169 SDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ 200 (208)
T ss_dssp HHTTCEEEHHHHHHHTSCSEECSCC-------
T ss_pred HhCCcEEcHHHHHHcCCCcEecCchHHHHHHH
Confidence 88999999999999999999985 45555433
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.9e-09 Score=110.39 Aligned_cols=99 Identities=14% Similarity=0.243 Sum_probs=73.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+||+|||+|.||.++|..++..|+ +|+++|+++++++.....+..... ......++..+++++++++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~------------~~~~~~~i~~t~d~~a~~~ 70 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN 70 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHh------------hcCCCeEEEECCCHHHHCC
Confidence 589999999999999999999997 999999999887642222211100 0111235666678889999
Q ss_pred CCEEEEec--------------cCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 388 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 388 aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
||+||+++ .++..+++++++++.+++ ++++++
T Consensus 71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi 116 (309)
T 1ur5_A 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVII 116 (309)
T ss_dssp CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEE
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Confidence 99999997 344578888999999987 666553
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-09 Score=112.23 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHH
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVY 680 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~ 680 (733)
+++||+||++.++++||+++++||++ +++|||.+|..|+|+|...-|||+++|..|.+...
T Consensus 190 ~pGFi~NRl~~~~~~EA~~lv~eGva-s~edID~~~~~g~g~~~a~mGPf~~~Dl~G~~~~~ 250 (319)
T 3ado_A 190 IDGFVLNRLQYAIISEAWRLVEEGIV-SPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLS 250 (319)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHTTHHHHHTTSCHHHHHHHTTTSHHH
T ss_pred CCCEeHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCCcchhhhhhhcCccHHH
Confidence 68999999999999999999999999 99999999999999871112999999999987644
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.8e-08 Score=103.06 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=106.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHH-HHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~l~~ 387 (733)
+||+|||+|.||+.+|..|+++|++|++|++++ .+... +.|...... -...+..+..+++.+.+.+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~-----------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 69 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIA-----------GNGLKVFSINGDFTLPHVKGYRAPEEIGP 69 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHH-----------HTCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHH-----------hCCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence 479999999999999999999999999999986 23221 112100000 0000001233455566789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-HHHhcccCCCCcEEEEe------cCCCC---CCCCe-e
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAH------FFSPA---HVMPL-L 456 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~~~ig~h------~~~p~---~~~~l-v 456 (733)
+|+||.||| .....++++++.+.++++++|++...++.. +.+.+.++. .++++.- ...|- +..+. +
T Consensus 70 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~ 146 (312)
T 3hn2_A 70 MDLVLVGLK--TFANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI 146 (312)
T ss_dssp CSEEEECCC--GGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred CCEEEEecC--CCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence 999999998 555668889999999999999888888864 455555432 2444332 11121 11111 1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhh
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA 497 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl 497 (733)
.+-..+..+.+..+.+.+++...|....+..|.-+.....+
T Consensus 147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl 187 (312)
T 3hn2_A 147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKL 187 (312)
T ss_dssp EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHH
T ss_pred EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHH
Confidence 12122233567778888999988877666566444333333
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.75 E-value=5e-09 Score=112.06 Aligned_cols=117 Identities=14% Similarity=-0.000 Sum_probs=81.6
Q ss_pred ceEEEEcCCcCcHHHHHHHH-HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|+|||+|.||.++|+.+. ..|++|++||++++..+.+.+ . .+...+++ +.++
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~l~ell~ 219 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-----------L-------------GAERVDSLEELAR 219 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-----------H-------------TCEECSSHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhh-----------c-------------CcEEeCCHHHHhc
Confidence 47999999999999999999 999999999998765443211 0 12223344 5578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCCC-CcEEEEecCCC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFFSP 449 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~-~~~ig~h~~~p 449 (733)
+||+|++++|...+.+..+.+++.+.++++++|+..+++ .....+.+.+... -...+.|+|.+
T Consensus 220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 285 (348)
T 2w2k_A 220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF 285 (348)
T ss_dssp HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence 999999999987766555445666778999988643333 3334566555432 22367888874
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.7e-09 Score=107.89 Aligned_cols=120 Identities=19% Similarity=0.293 Sum_probs=78.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.||.++|..|+..|+ +|+++|+++++++..... ..+.. . .. ...++.. +++++++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~--------l~~~~-~---~~-~~~~i~~-~~~~a~~ 66 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAED--------IAHAA-P---VS-HGTRVWH-GGHSELA 66 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH--------HTTSC-C---TT-SCCEEEE-ECGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHh--------hhhhh-h---hc-CCeEEEE-CCHHHhC
Confidence 389999999999999999999999 999999998876532111 11111 0 00 0012332 4668899
Q ss_pred CCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCeEEE--ecCCCCCHHHHhcccCCCCcEEEE
Q 004726 387 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTSSQDRIIGA 444 (733)
Q Consensus 387 ~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~~~~~~ig~ 444 (733)
+||+||+++ |. +..+++++++++.+++ ++++++ ||.+......+.+.. .+.|++|+
T Consensus 67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~ 138 (304)
T 2v6b_A 67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS 138 (304)
T ss_dssp TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence 999999999 32 4457788999999986 565543 444443322333333 56677664
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.8e-09 Score=111.47 Aligned_cols=116 Identities=14% Similarity=0.050 Sum_probs=80.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|..++..|++|++||+++++.+... +.| +... ++ +.+++
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~e~l~~ 210 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EFQ-------------AEFV-STPELAAQ 210 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TTT-------------CEEC-CHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hcC-------------ceeC-CHHHHHhh
Confidence 5899999999999999999999999999999876543321 111 2222 44 55789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC---CHHHHhcccC-CCCcEEEEecCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI---DLNIVGEKTS-SQDRIIGAHFFSPA 450 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~---~~~~l~~~~~-~~~~~ig~h~~~p~ 450 (733)
||+||+++|...+.+..+.+++.+.++++++++ |+|+. ....+.+.+. ......++++|.|.
T Consensus 211 aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailI-n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e 276 (330)
T 2gcg_A 211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFI-NISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 276 (330)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEE-ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred CCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence 999999999776654444355667789999886 45443 3345555543 23345788887654
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.5e-08 Score=102.78 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=71.6
Q ss_pred CCCCcceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC--hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 304 KPRGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 304 ~~~~~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~--~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
|.++.+||+|||+|.||.++|..++..|+ +|+++|++ ++.++.....+.... .......++..++
T Consensus 4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~------------~~~~~~~~i~~t~ 71 (315)
T 3tl2_A 4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEAS------------PVQGFDANIIGTS 71 (315)
T ss_dssp CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHH------------HHHTCCCCEEEES
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhh------------hhccCCCEEEEcC
Confidence 44556799999999999999999999999 99999999 444432211111110 0111123566677
Q ss_pred CccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 381 DYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 381 ~~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+++++++||+||+++.- +..+.+++.+.+.++++ +++++
T Consensus 72 d~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vl 124 (315)
T 3tl2_A 72 DYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSP-NAIIV 124 (315)
T ss_dssp CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred CHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 88999999999999721 33466677778888875 55544
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.9e-08 Score=103.29 Aligned_cols=110 Identities=11% Similarity=0.178 Sum_probs=76.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
||+|||+|.||.++|..++..|+ +|+++|+++++++.....+...... . + ...++..+++++++++|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~-~--~---------~~~~i~~t~d~~a~~~a 68 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE-L--G---------VDIRISGSNSYEDMRGS 68 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH-H--T---------CCCCEEEESCGGGGTTC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh-c--C---------CCeEEEECCCHHHhCCC
Confidence 69999999999999999999898 7999999998876432222111000 0 0 01245556778899999
Q ss_pred CEEEEec--------------cCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcc
Q 004726 389 DMVIEAV--------------IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK 434 (733)
Q Consensus 389 DlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~ 434 (733)
|+||++. ..+..+++++.+++.+++ |+++++.. |.|+..+...
T Consensus 69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~--tNPv~~~t~~ 125 (308)
T 2d4a_B 69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVIT--TNPVDAMTYV 125 (308)
T ss_dssp SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC--CSSHHHHHHH
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe--CCchHHHHHH
Confidence 9999994 456678889999999997 55543322 3355544443
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-09 Score=110.84 Aligned_cols=115 Identities=16% Similarity=0.067 Sum_probs=79.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|..++..|++|++||++++. +.+. +.| +.. +++ +.+++
T Consensus 151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~~~l~~ 204 (334)
T 2dbq_A 151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-----------ELN-------------AEF-KPLEDLLRE 204 (334)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HHC-------------CEE-CCHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-----------hcC-------------ccc-CCHHHHHhh
Confidence 58999999999999999999999999999999876 3221 011 122 234 55789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSP 449 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~~p 449 (733)
||+||+++|...+.+.-+.+++.+.++++++++..+.+..+. .+.+.+. ..-...+.|+|++
T Consensus 205 aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ 269 (334)
T 2dbq_A 205 SDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 269 (334)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred CCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence 999999999877654433356667789999886444333333 3444443 2334477898873
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.6e-08 Score=101.15 Aligned_cols=165 Identities=15% Similarity=0.114 Sum_probs=102.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHh-H---hcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL-V---TRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~-~---~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
+||+|||+|.||+.+|..|+++|++|++|++++. +...+ . .+ + ..|.. .+..+..+++.+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~----~--Gl~~~~~~~g~~-------~~~~~~~~~~~~~ 67 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKA----K--GIRIRSATLGDY-------TFRPAAVVRSAAE 67 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHH----H--CEEEEETTTCCE-------EECCSCEESCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHh----C--CcEEeecCCCcE-------EEeeeeeECCHHH
Confidence 4899999999999999999999999999999862 32211 0 00 0 00100 0001334455544
Q ss_pred c-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-HHHhcccCCCCcEEEEe-c-----CCCCCC---C
Q 004726 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAH-F-----FSPAHV---M 453 (733)
Q Consensus 385 l-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~~~ig~h-~-----~~p~~~---~ 453 (733)
+ +++|+||.|||... ..++++++.+.++++++|++...++.. ..+.+.+... ++++.- + ..|-.+ .
T Consensus 68 ~~~~~DlVilavK~~~--~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~ 144 (320)
T 3i83_A 68 LETKPDCTLLCIKVVE--GADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQA 144 (320)
T ss_dssp CSSCCSEEEECCCCCT--TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEE
T ss_pred cCCCCCEEEEecCCCC--hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECC
Confidence 4 48999999998433 346788898999999988888888764 4565555432 444321 1 112111 1
Q ss_pred CeeEEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 454 PLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 454 ~lveiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
+....+ .....+.+..+.+.+++...|....+..|.-+
T Consensus 145 ~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~ 183 (320)
T 3i83_A 145 YGRLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITT 183 (320)
T ss_dssp EEEEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHH
T ss_pred CCEEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHH
Confidence 111112 11233456788888999988877766666443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=98.96 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=68.4
Q ss_pred eEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.||.++|..|+.. |++|+++|+++++++.....+..... ......++..+++++.+++
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~~l~~ 69 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTAN 69 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGTT
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh------------cccCCcEEEECCCHHHHCC
Confidence 799999999999999999985 79999999999877743211111000 0001134666677877999
Q ss_pred CCEEEEeccCC--------------hHHHHHHHHHHHHhCCCCeEE
Q 004726 388 VDMVIEAVIES--------------VPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 388 aDlVI~avpe~--------------~~~k~~v~~~l~~~~~~~~ii 419 (733)
||+||+++|.. ..+.+++.+.+.+++++..++
T Consensus 70 aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~vi 115 (310)
T 1guz_A 70 SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIII 115 (310)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 99999999632 245567777888886444433
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-08 Score=107.91 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=77.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|..+...|++|++||++++. +.+.+ .| +... ++ +.+++
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g-------------~~~~-~l~e~l~~ 200 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKE-----------LK-------------ARYM-DIDELLEK 200 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHH-----------HT-------------EEEC-CHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhh-----------cC-------------ceec-CHHHHHhh
Confidence 47999999999999999999999999999999875 32210 01 1222 34 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC-HH--HHhcccCC-CCcEEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-LN--IVGEKTSS-QDRIIGAHFFS 448 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~--~l~~~~~~-~~~~ig~h~~~ 448 (733)
||+|++++|...+.+..+-+++.+.++++ +++ |+|... +. .+.+.+.. .....|.|+|.
T Consensus 201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ili-n~srg~~vd~~aL~~aL~~~~i~gaglDv~~ 263 (333)
T 2d0i_A 201 SDIVILALPLTRDTYHIINEERVKKLEGK-YLV-NIGRGALVDEKAVTEAIKQGKLKGYATDVFE 263 (333)
T ss_dssp CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEE-ECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEE-ECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence 99999999987665544444556678888 765 455433 22 34444432 33568899887
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.3e-08 Score=101.53 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=72.4
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
+++||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+..... ... ....+..+++++++
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~-~~~-----------~~~~v~~t~d~~a~ 73 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSP-VDG-----------FDAKFTGANDYAAI 73 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHH-HHT-----------CCCCEEEESSGGGG
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhh-hcC-----------CCCEEEEeCCHHHH
Confidence 45799999999999999999999999 999999999887643222222111 000 01245556788999
Q ss_pred CCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 386 ~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
++||+||.++.- +..+.+++.+++.+++ ++++++.
T Consensus 74 ~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iiv 122 (324)
T 3gvi_A 74 EGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVIC 122 (324)
T ss_dssp TTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred CCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEe
Confidence 999999999731 3455666777788887 5555543
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.3e-09 Score=109.77 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=78.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++..+ | ....+++ +.+++
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~~ 215 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELASN 215 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHhc
Confidence 4799999999999999999999999999999875321 1 1123344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS 448 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~~~ig~h~~~ 448 (733)
||+|++++|...+.+.-+-++..+.++++++++..+++..+ ..+.+.+. ...+..++++|.
T Consensus 216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~ 279 (333)
T 3ba1_A 216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE 279 (333)
T ss_dssp CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence 99999999976655443334455667889988644443332 35555554 334667888876
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=100.18 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=69.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccCcccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l 385 (733)
+||+|||+|.||.++|..|+++| ++|+++|+++++++.....+..... ..+ ..+.. +++++++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~---~~~-----------~~~~~~~~d~~~~ 67 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---NLE-----------AHGNIVINDWAAL 67 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---GSS-----------SCCEEEESCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh---hcC-----------CCeEEEeCCHHHh
Confidence 58999999999999999999999 7999999999887664332211100 000 11222 3566889
Q ss_pred CCCCEEEEeccCCh------------------HHHHHHHHHHHHhCCCCeEEE
Q 004726 386 KDVDMVIEAVIESV------------------PLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 386 ~~aDlVI~avpe~~------------------~~k~~v~~~l~~~~~~~~ii~ 420 (733)
++||+||++++... .+++++.+++.++++ +++++
T Consensus 68 ~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii 119 (309)
T 1hyh_A 68 ADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLV 119 (309)
T ss_dssp TTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEE
T ss_pred CCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEE
Confidence 99999999998533 246788888888775 55544
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.6e-08 Score=101.91 Aligned_cols=103 Identities=17% Similarity=0.318 Sum_probs=71.9
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
|+++||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+..... .......+..++++++
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~------------~~~~~~~v~~t~d~~a 70 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCP------------IEGVDFKVRGTNDYKD 70 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhh------------hcCCCcEEEEcCCHHH
Confidence 345799999999999999999999998 999999999886533222211100 0000123555667899
Q ss_pred cCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 385 l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+++||+||.+..- +..+.+++.+.+.+++ |+++++.
T Consensus 71 ~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~viv 120 (321)
T 3p7m_A 71 LENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVIC 120 (321)
T ss_dssp GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred HCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEE
Confidence 9999999999631 3456677778888888 5555443
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.7e-08 Score=102.71 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=74.9
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
+.+||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.... ... ...++..++++++
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~----~~~---------~~~~i~~t~d~~~ 86 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGS----LFL---------HTAKIVSGKDYSV 86 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHG----GGS---------CCSEEEEESSSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhh----hcc---------cCCeEEEcCCHHH
Confidence 46799999999999999999999997 99999999988765433332211 000 1235666788888
Q ss_pred cCCCCEEEEec--------------cCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 385 FKDVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 385 l~~aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+++||+||++. ..+..+++++.+++.+++ |+++++
T Consensus 87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~il 135 (330)
T 3ldh_A 87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKE 135 (330)
T ss_dssp CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEE
Confidence 99999999875 345678888889999995 555444
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.8e-07 Score=101.19 Aligned_cols=201 Identities=17% Similarity=0.194 Sum_probs=150.3
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC---C-----------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCcccCCCC
Q 004726 3 APRVTMEVG-NDGVAIITLINPP---V-----------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGRFSGGFD 66 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p~---~-----------Nal~~~~~~~l~~~l~~~~-~d~~v~~vvl~g~g~~F~aG~D 66 (733)
|..+....+ ..+++.++...|. . +.+...|..||.+++-.+. +++++...++...|+.
T Consensus 265 y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~------ 338 (556)
T 2w3p_A 265 YKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA------ 338 (556)
T ss_dssp ETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH------
Confidence 455555553 4568899987762 1 4455678899977776665 6788999999777643
Q ss_pred chhhh-------hccCCCcccccchhHHHHHHHHHhcCCCcEEEEe-CCcccchh-hHHhhhcCEEEEeC-------Cce
Q 004726 67 INVFQ-------KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIAAP-------KTQ 130 (733)
Q Consensus 67 l~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav-~G~a~GgG-~~lalacD~ria~~-------~a~ 130 (733)
.... ...+..-..+...+..+.+ .+|.....-++|.| +|.|+.|- +||+++||..++-+ .+.
T Consensus 339 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~ 416 (556)
T 2w3p_A 339 -RHLLAADASLMQHKDHWFVRETIGLLRRTL-ARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPA 416 (556)
T ss_dssp -HHHHHHHHHHHHTTTSHHHHHHHHHHHHHH-HHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCC
T ss_pred -HHHhhhHHHHHhccchHHHHHHHHHHHHHH-HHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCce
Confidence 2221 1111112234445566666 67888889999999 79998886 49999999999972 488
Q ss_pred EeCccccCCCCCChhhhhhhcccc-CHHHHHHH--HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchh
Q 004726 131 LGLPELTLGVIPGFGGTQRLPRLV-GLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW 207 (733)
Q Consensus 131 f~~pe~~~Gl~P~~g~~~~l~r~~-G~~~a~~l--~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~ 207 (733)
+.+.+.++|.+|..-+..+|.++. |.....+. ...|+++++++|.++|||+...++-|.+++++-..++-++.||.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (556)
T 2w3p_A 417 ITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDA 496 (556)
T ss_dssp EECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHH
T ss_pred eEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcch
Confidence 999999999999988888887765 44333332 346999999999999999999999999999999999999999988
Q ss_pred hhhh
Q 004726 208 IRSL 211 (733)
Q Consensus 208 ~~~~ 211 (733)
+..+
T Consensus 497 ~~~~ 500 (556)
T 2w3p_A 497 LTGL 500 (556)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7654
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.7e-07 Score=97.62 Aligned_cols=106 Identities=26% Similarity=0.334 Sum_probs=72.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
++||+|||+|.||..+|..|+.+|+ +|+++|+++++++.....+...+ .-.+ ...+..+++++++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~---~~~~----------~~~v~~~~~~~~~ 73 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS---SFYP----------TVSIDGSDDPEIC 73 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG---GGST----------TCEEEEESCGGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhh---hhcC----------CeEEEeCCCHHHh
Confidence 3589999999999999999999999 99999999877652111111110 0000 0234444466788
Q ss_pred CCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 386 ~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
++||+||.++.. +..+.+++++++.++ .++++|++.+.++.
T Consensus 74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~ 128 (319)
T 1lld_A 74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVD 128 (319)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHH
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchH
Confidence 999999999931 235667888888887 56777765444443
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.8e-08 Score=104.88 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=74.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CCCeeEEEe---CChHHHHHHHHHHHHHHHHhHhcCC-CC---H-HHHHHHhhccc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NNIYVVLKE---VNSEYLLKGIKTIEANVRGLVTRGK-LT---Q-DKANNALKMLK-G 378 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G~~V~~~d---~~~e~~~~~~~~i~~~l~~~~~~g~-~~---~-~~~~~~~~~i~-~ 378 (733)
+||+|||+|.||.++|..|++ +|++|++|| ++++.++.+.+ +.|. +. . .+......++. .
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 72 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG----------ADELTVIVNEKDGTQTEVKSRPKVI 72 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT----------TSCEEEEEECSSSCEEEEEECCSEE
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh----------hccceeeeecCCCccceeeccceEE
Confidence 589999999999999999988 599999999 77776655311 1110 00 0 00000011233 4
Q ss_pred ccCc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 379 VLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 379 ~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
++++ +++++||+||+|||. ....++++++.+.++++++|++++++..
T Consensus 73 ~~~~~~a~~~aD~Vilav~~--~~~~~v~~~l~~~l~~~~ivv~~~~~~G 120 (404)
T 3c7a_A 73 TKDPEIAISGADVVILTVPA--FAHEGYFQAMAPYVQDSALIVGLPSQAG 120 (404)
T ss_dssp ESCHHHHHTTCSEEEECSCG--GGHHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred eCCHHHHhCCCCEEEEeCch--HHHHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence 5565 567899999999994 4467899999999999999988655554
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=100.88 Aligned_cols=103 Identities=16% Similarity=0.090 Sum_probs=71.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcc-ccccCc-ccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-KGVLDY-SEF 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~-~~l 385 (733)
++||+|||+|.||..+|..|+++|++|++||+++++++...+.. ...+.....+ ....+ ..++++ +.+
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~ 73 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG----AIIAEGPGLA------GTAHPDLLTSDIGLAV 73 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT----SEEEESSSCC------EEECCSEEESCHHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC----CeEEeccccc------cccccceecCCHHHHH
Confidence 35899999999999999999999999999999998876643210 0000000000 00112 234455 457
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
+++|+||+|+|.... .++++++.+.++++++|++.
T Consensus 74 ~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 74 KDADVILIVVPAIHH--ASIAANIASYISEGQLIILN 108 (359)
T ss_dssp TTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEEEES
T ss_pred hcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEEEEc
Confidence 899999999995543 67888899989999877665
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-08 Score=102.83 Aligned_cols=124 Identities=10% Similarity=-0.026 Sum_probs=84.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++..+. ....+++ +.+++
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~~ 173 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFRQ 173 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHHH
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhhc
Confidence 58999999999999999999999999999998754211 1223344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--CHHHHhcccC-CCCcEEEEecC-----CCCCCCCeeEEe
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFF-----SPAHVMPLLEIV 459 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~~~ig~h~~-----~p~~~~~lveiv 459 (733)
||+|+.++|...+...-+-++..+.++++++++..+++- ....+.+.+. ..-...+...| +|.+..+.+-++
T Consensus 174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilT 253 (290)
T 3gvx_A 174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILS 253 (290)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEEC
T ss_pred cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcC
Confidence 999999999766655444466777889999886444332 2334444443 23344555544 344455566677
Q ss_pred cC
Q 004726 460 RT 461 (733)
Q Consensus 460 ~~ 461 (733)
|+
T Consensus 254 PH 255 (290)
T 3gvx_A 254 PH 255 (290)
T ss_dssp CS
T ss_pred cc
Confidence 76
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-07 Score=100.66 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=55.9
Q ss_pred ceEEEEcCCcCc--HHHHHHHHHC----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMG--SGIATAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG--~~iA~~l~~~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|.|| .++|..|+.. |++|++||+++++++.+....... ...... ..++..++|+
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~----l~~~~~--------~~~I~~ttD~ 71 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKY----VEEVGA--------DLKFEKTMNL 71 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHH----HHHTTC--------CCEEEEESCH
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHH----hccCCC--------CcEEEEECCH
Confidence 589999999975 5557788754 899999999999988754433222 211111 1367778887
Q ss_pred -cccCCCCEEEEecc
Q 004726 383 -SEFKDVDMVIEAVI 396 (733)
Q Consensus 383 -~~l~~aDlVI~avp 396 (733)
+++++||+||++++
T Consensus 72 ~eal~dAD~VIiaag 86 (480)
T 1obb_A 72 DDVIIDADFVINTAM 86 (480)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred HHHhCCCCEEEECCC
Confidence 78999999999995
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-07 Score=99.75 Aligned_cols=112 Identities=19% Similarity=0.248 Sum_probs=73.2
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
+++||+|||+|.||.++|..++..|. +|+++|++++.++.....+.. . .. ... ..-++. ++++++
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~---~-~~--~~~------~~~~i~-~~~~~a 71 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH---G-KV--FAP------KPVDIW-HGDYDD 71 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH---H-TT--SSS------SCCEEE-ECCGGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHH---H-hh--hcC------CCeEEE-cCcHHH
Confidence 35699999999999999999998885 899999998855432111111 0 00 000 001222 245688
Q ss_pred cCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcc
Q 004726 385 FKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK 434 (733)
Q Consensus 385 l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~ 434 (733)
+++||+||++++ ++..+++++.+++.++++ +++++.. +-|+..+...
T Consensus 72 l~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~~iv~--tNPv~~~~~~ 132 (316)
T 1ldn_A 72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGF-QGLFLVA--TNPVDILTYA 132 (316)
T ss_dssp TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTC-CSEEEEC--SSSHHHHHHH
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCC-CCEEEEe--CCchHHHHHH
Confidence 999999999953 344788999999999975 4433322 3355544443
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4.2e-08 Score=110.85 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=95.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||+++|..+...|++|++||++... +.+. +.| +... ++ +.+++
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------~~~~-~l~e~~~~ 196 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAA-----------QLG-------------IELL-SLDDLLAR 196 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHH-----------HHT-------------CEEC-CHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------cEEc-CHHHHHhc
Confidence 58999999999999999999999999999998742 2211 111 1112 33 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH--HhcccCCC-C-----cEEEEecC--CCCCCCCeeE
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQ-D-----RIIGAHFF--SPAHVMPLLE 457 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~~~~-~-----~~ig~h~~--~p~~~~~lve 457 (733)
||+|+.|+|...+...-+-+++.+.++++++++..+.+..+.+ +.+.+... - .+++.||. +|.+..+.+-
T Consensus 197 aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vi 276 (529)
T 1ygy_A 197 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVV 276 (529)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEE
T ss_pred CCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEE
Confidence 9999999996644433332346677899998876555544443 33443221 1 13333432 1223335566
Q ss_pred EecCCC-CCHHHHHH-----HHHHHHHcCCee
Q 004726 458 IVRTER-TSAQVILD-----LMTVGKIIKKVP 483 (733)
Q Consensus 458 iv~~~~-t~~e~~~~-----~~~l~~~lG~~~ 483 (733)
++|+.. +++++.+. +.++.+.++..+
T Consensus 277 lTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~ 308 (529)
T 1ygy_A 277 VTPHLGASTAEAQDRAGTDVAESVRLALAGEF 308 (529)
T ss_dssp ECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888776 67887775 666777776544
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-07 Score=99.31 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=85.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeC-ChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~-~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|+|||+|.||.++|+.+...|++|++||+ +++.. .+. +.| +...+++ +.++
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~g-------------~~~~~~l~ell~ 201 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-----------SYQ-------------ATFHDSLDSLLS 201 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-----------HHT-------------CEECSSHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-----------hcC-------------cEEcCCHHHHHh
Confidence 5899999999999999999999999999999 87652 211 111 1223234 5678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEEecC--CC-----CCCCCee
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF--SP-----AHVMPLL 456 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~~~ig~h~~--~p-----~~~~~lv 456 (733)
+||+|+.++|...+...-+-++..+.++++++++..+++ +....+.+.+.. .-.-.+..+| .| .+..+.+
T Consensus 202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nv 281 (320)
T 1gdh_A 202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNT 281 (320)
T ss_dssp HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTE
T ss_pred hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCE
Confidence 999999999976654332224456778999988755544 233344444432 1122334444 22 2233446
Q ss_pred EEecCCCC-CHHHHHHHH
Q 004726 457 EIVRTERT-SAQVILDLM 473 (733)
Q Consensus 457 eiv~~~~t-~~e~~~~~~ 473 (733)
-++|+... +.++.+.+.
T Consensus 282 iltPH~~~~t~~~~~~~~ 299 (320)
T 1gdh_A 282 FLFPHIGSAATQAREDMA 299 (320)
T ss_dssp EECSSCTTCBHHHHHHHH
T ss_pred EECCcCCcCcHHHHHHHH
Confidence 66675443 444444443
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=8.2e-07 Score=92.27 Aligned_cols=107 Identities=17% Similarity=0.284 Sum_probs=71.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.||.++|..|+..|+ +|++||++++.++.....+......+ + ....+..+++++++++
T Consensus 2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~---~---------~~~~i~~t~d~~a~~~ 69 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI---D---------KYPKIVGGADYSLLKG 69 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTT---T---------CCCEEEEESCGGGGTT
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhc---C---------CCCEEEEeCCHHHhCC
Confidence 79999999999999999999998 99999999988763222221111100 0 0124565667889999
Q ss_pred CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHH
Q 004726 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (733)
Q Consensus 388 aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l 431 (733)
||+||.+..- +..+.+.+.+++.+++ |+++++..| -|+..+
T Consensus 70 aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvs--NPvd~~ 124 (294)
T 1oju_A 70 SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVT--NPMDVM 124 (294)
T ss_dssp CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECS--SSHHHH
T ss_pred CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeC--CcchHH
Confidence 9999999732 2244555566777775 555554333 344433
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.1e-07 Score=94.03 Aligned_cols=110 Identities=16% Similarity=0.114 Sum_probs=65.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++... ......++ +.+++
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----------------------------~~~~~~sl~ell~~ 222 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGV-----------------------------DWIAHQSPVDLARD 222 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTS-----------------------------CCEECSSHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccccc-----------------------------CceecCCHHHHHhc
Confidence 5899999999999999999999999999999875310 01122344 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccCC-CCcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~-~~~~ig~h~~ 447 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+. .+.+.+.. .-...++..|
T Consensus 223 aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf 285 (340)
T 4dgs_A 223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVF 285 (340)
T ss_dssp CSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCC
T ss_pred CCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCc
Confidence 999999999777766555567777889999886444443332 33343332 2234455544
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-07 Score=98.34 Aligned_cols=127 Identities=10% Similarity=0.057 Sum_probs=83.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++..+.. .......++ +.+++
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~ 191 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF--------------------------HETVAFTATADALAT 191 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC--------------------------SEEEEGGGCHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH--------------------------hhccccCCHHHHHhh
Confidence 589999999999999999999999999999987542210 011112233 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEEecCC--C------CCCCCee
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFS--P------AHVMPLL 456 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~-~~~~~ig~h~~~--p------~~~~~lv 456 (733)
||+|+.++|...+...-+-++..+.++++++++..+.+ +....+.+.+. ..-...+...|. | .+..+.|
T Consensus 192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv 271 (324)
T 3evt_A 192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV 271 (324)
T ss_dssp CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSE
T ss_pred CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCE
Confidence 99999999977766554446677788999988643333 33345555443 223344554442 2 2233456
Q ss_pred EEecC
Q 004726 457 EIVRT 461 (733)
Q Consensus 457 eiv~~ 461 (733)
-++|+
T Consensus 272 ilTPH 276 (324)
T 3evt_A 272 LITPH 276 (324)
T ss_dssp EECCS
T ss_pred EEcCc
Confidence 66664
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.37 E-value=5e-07 Score=94.76 Aligned_cols=138 Identities=16% Similarity=0.085 Sum_probs=84.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++. +.+. +.| +... ++ +.+++
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 196 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-----------EVN-------------GKFV-DLETLLKE 196 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HTT-------------CEEC-CHHHHHHH
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-----------hcC-------------cccc-CHHHHHhh
Confidence 48999999999999999999999999999999875 2211 111 1112 33 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEEecCC--CC------CCCCee
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS--PA------HVMPLL 456 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~~~ig~h~~~--p~------~~~~lv 456 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+++-.+ ..+.+.+. ..-.-.+..+|. |. +..+.+
T Consensus 197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nv 276 (307)
T 1wwk_A 197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNV 276 (307)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTE
T ss_pred CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCE
Confidence 99999999976654332224455678999988654444222 24444432 222334444433 21 233445
Q ss_pred EEecCCCC-CHHHHHHH
Q 004726 457 EIVRTERT-SAQVILDL 472 (733)
Q Consensus 457 eiv~~~~t-~~e~~~~~ 472 (733)
-++|+... +.+..+.+
T Consensus 277 iltPh~~~~t~~~~~~~ 293 (307)
T 1wwk_A 277 VLTPHIGASTVEAQERA 293 (307)
T ss_dssp EECSSCTTCBHHHHHHH
T ss_pred EECCccccCcHHHHHHH
Confidence 56665433 44444333
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.2e-07 Score=97.66 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=71.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||+++...+.+.+ . .+...+++ +.+++
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~l~ell~~ 220 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE-----------T-------------GAKFVEDLNEMLPK 220 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHH-----------H-------------CCEECSCHHHHGGG
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHh-----------C-------------CCeEcCCHHHHHhc
Confidence 48999999999999999999999999999998644333211 0 12233344 66899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhccc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT 435 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~ 435 (733)
||+|+.++|-..+...-+-++..+.++++++|+..+.+ +....+.+.+
T Consensus 221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 270 (351)
T 3jtm_A 221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAV 270 (351)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHH
Confidence 99999999976665444445666778999988643333 2333444444
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-06 Score=91.98 Aligned_cols=116 Identities=18% Similarity=0.060 Sum_probs=74.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||+|||+|.||+.+|..|+ +|++|++|+++++.++...+ .|......-......+ ..+.+.+.++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~-----------~G~~~~~~~~~~~~~~--~~~~~~~~~~ 68 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQS-----------EGIRLYKGGEEFRADC--SADTSINSDF 68 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHH-----------HCEEEEETTEEEEECC--EEESSCCSCC
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHh-----------CCceEecCCCeecccc--cccccccCCC
Confidence 48999999999999999999 99999999999987665422 1110000000000001 1112456789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhcccCCCCcEEE
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIG 443 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~~~ig 443 (733)
|+||.||+ .....++++++.+. .+++ |++...++... .+.+.++. .++++
T Consensus 69 D~vilavK--~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~~-~~vl~ 119 (307)
T 3ego_A 69 DLLVVTVK--QHQLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHVG-HSIYV 119 (307)
T ss_dssp SEEEECCC--GGGHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCCS-CEEEE
T ss_pred CEEEEEeC--HHHHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCCC-CcEEE
Confidence 99999998 55566777777654 6677 77778888775 44444332 34443
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=8e-08 Score=103.23 Aligned_cols=110 Identities=22% Similarity=0.145 Sum_probs=79.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--------eeEEEeCChHHHHH-HHHHHHHHHHHhHhcC-CCCHHHHHHHhhcccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--------YVVLKEVNSEYLLK-GIKTIEANVRGLVTRG-KLTQDKANNALKMLKG 378 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--------~V~~~d~~~e~~~~-~~~~i~~~l~~~~~~g-~~~~~~~~~~~~~i~~ 378 (733)
.||+|||+|.||.++|..|+++|+ +|++|.++++...+ ..+.| ....++. .+..- .....+.+
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~i----n~~~~N~~YLpgv---~Lp~~i~~ 107 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEII----NTRHQNVKYLPGI---TLPDNLVA 107 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHH----TTTCCBTTTBTTC---CCCSSEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHH----HhcCcCcccCCCC---cCCCCcEE
Confidence 489999999999999999999875 59999998763211 11111 1111111 01100 01145777
Q ss_pred ccCc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 379 VLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 379 ~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
++|+ +++++||+||.+|| .+..+.+++++.+++++++++++.+.++.
T Consensus 108 t~dl~~al~~ad~ii~avP--s~~~r~~l~~l~~~~~~~~~iv~~~KGie 155 (391)
T 4fgw_A 108 NPDLIDSVKDVDIIVFNIP--HQFLPRICSQLKGHVDSHVRAISCLKGFE 155 (391)
T ss_dssp ESCHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred eCCHHHHHhcCCEEEEECC--hhhhHHHHHHhccccCCCceeEEeccccc
Confidence 8887 67899999999999 88899999999999999998888887764
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=84.75 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.++..+.+.+.+.|..++.++. +.|+|. +-| +++. ....++ +.|..+++||++.
T Consensus 47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG------Gsv~----------------a~~~I~-~~i~~~~~pV~t~ 102 (215)
T 2f6i_A 47 EINKKTADELISQLLYLDNINH-NDIKIYINSPG------GSIN----------------EGLAIL-DIFNYIKSDIQTI 102 (215)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC------BCHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC------CCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence 4788889999999998876655 666663 333 2221 122455 6688899999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCC---Chhh----hh--------hhccc--cCHHHHHHHHHc
Q 004726 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIP---GFGG----TQ--------RLPRL--VGLSKAIEMMLL 165 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P---~~g~----~~--------~l~r~--~G~~~a~~l~lt 165 (733)
+.|.|..+|.-++++||. |++.+++.+++.....|... +... .. .+.+. .......+++-.
T Consensus 103 v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~ 182 (215)
T 2f6i_A 103 SFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR 182 (215)
T ss_dssp EEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred EeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhC
Confidence 999999999999999999 99999999987665332110 0000 00 00111 133444455555
Q ss_pred CCCCCHHHHHHcCCccEEcCc
Q 004726 166 SKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~~ 186 (733)
+..++++||+++||||+|.+.
T Consensus 183 ~~~lta~eA~e~GLiD~I~~~ 203 (215)
T 2f6i_A 183 DYYMNALEAKQYGIIDEVIET 203 (215)
T ss_dssp TCEECHHHHHHHTSCSEECCC
T ss_pred CeecCHHHHHHCCCCCEecCC
Confidence 667799999999999999854
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.31 E-value=8.5e-07 Score=94.51 Aligned_cols=139 Identities=9% Similarity=0.039 Sum_probs=86.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++... +.+ .+.| +...+++ +.+++
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~ 215 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-----------RADG-------------FAVAESKDALFEQ 215 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-----------HHTT-------------CEECSSHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-----------HhcC-------------ceEeCCHHHHHhh
Confidence 58999999999999999999999999999998632 211 1111 2333344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEEecCC--------CCCCCCee
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFS--------PAHVMPLL 456 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~-~~~~~ig~h~~~--------p~~~~~lv 456 (733)
||+|+.++|-..+.+.-+-++..+.++++++++..+.+ +....+.+.+. ..-...++..|. |.+..+.+
T Consensus 216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv 295 (352)
T 3gg9_A 216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENC 295 (352)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTE
T ss_pred CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCE
Confidence 99999999977665544445667778999988643333 22234444432 222334444332 22333456
Q ss_pred EEecCCC-CCHHHHHHH
Q 004726 457 EIVRTER-TSAQVILDL 472 (733)
Q Consensus 457 eiv~~~~-t~~e~~~~~ 472 (733)
-++|+-. .+.++.+.+
T Consensus 296 ilTPHia~~t~e~~~~~ 312 (352)
T 3gg9_A 296 ICTPHIGYVERESYEMY 312 (352)
T ss_dssp EECCSCTTCBHHHHHHH
T ss_pred EECCCCCCCCHHHHHHH
Confidence 6666533 344544433
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=6.7e-07 Score=93.49 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=85.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++ +. + .....++ +.+++
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~-------------~~~~~~l~ell~~ 174 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------P-------------WRFTNSLEEALRE 174 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------S-------------SCCBSCSHHHHTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------C-------------cccCCCHHHHHhh
Confidence 5899999999999999999999999999999865 10 0 0112233 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecC---CCC------CCCCe
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFF---SPA------HVMPL 455 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~---~p~------~~~~l 455 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+++-.+. .+.+.+. ..-.-.+...| .|. +..+.
T Consensus 175 aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~n 254 (303)
T 1qp8_A 175 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPN 254 (303)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTT
T ss_pred CCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCC
Confidence 999999999766544333345667889999886444432222 3444432 22334566655 332 22345
Q ss_pred eEEecCCCC---CHHHHHH
Q 004726 456 LEIVRTERT---SAQVILD 471 (733)
Q Consensus 456 veiv~~~~t---~~e~~~~ 471 (733)
+-++|+... +.++.+.
T Consensus 255 viltPH~~~~~~t~e~~~~ 273 (303)
T 1qp8_A 255 VVATPWVAGGYGNERVWRQ 273 (303)
T ss_dssp EEECCSCSSSSSCHHHHHH
T ss_pred EEECCCcCCCCCCHHHHHH
Confidence 667776442 4555443
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.2e-07 Score=94.61 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=71.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||+++...+.. ......+++ +.+++
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~g~~~~~~l~ell~~ 227 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE--------------------------EGAIYHDTLDSLLGA 227 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH--------------------------TTCEECSSHHHHHHT
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh--------------------------cCCeEeCCHHHHHhh
Confidence 589999999999999999999999999999986432221 012223344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhccc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT 435 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~ 435 (733)
||+|+.++|-..+...-+-++..+.++++++++..+.+ +....+.+.+
T Consensus 228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 277 (345)
T 4g2n_A 228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEAL 277 (345)
T ss_dssp CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence 99999999977665544445666778999988643333 3333444444
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=82.51 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.+++.+.+.+...|..++.++..+.|+| .+-|+ ++. ....++ +.|..+++||++.
T Consensus 35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG------~v~----------------~~~~I~-~~i~~~~~~V~t~ 91 (203)
T 3qwd_A 35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGG------SVT----------------AGFAIY-DTIQHIKPDVQTI 91 (203)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC------CHH----------------HHHHHH-HHHHHhcCCcEEE
Confidence 4899999999999999987766676665 33332 221 122455 6688899999999
Q ss_pred eCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhhh------------------hhccc--cCHHHHHHH
Q 004726 105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRL--VGLSKAIEM 162 (733)
Q Consensus 105 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~~------------------~l~r~--~G~~~a~~l 162 (733)
+.|.|.++|.-++++|| .|++.++++|......-|. .|-.. .+.+. .......++
T Consensus 92 ~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~ 168 (203)
T 3qwd_A 92 CIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGA---QGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKD 168 (203)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSST---TTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999 6999999999886553221 11110 01111 133445566
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcc
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSE 187 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~ 187 (733)
+-....++|+||++.||||+|++..
T Consensus 169 ~~~d~~lta~EA~e~GliD~I~~~~ 193 (203)
T 3qwd_A 169 TDRDNFLTAEEAKEYGLIDEVMVPE 193 (203)
T ss_dssp HTSCCCEEHHHHHHHTSCSEECCCC
T ss_pred hhcCceecHHHHHHcCCcCEecCCc
Confidence 6677889999999999999999654
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-07 Score=97.76 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=69.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++... +. +.| +... ++ +.+++
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g-------------~~~~-~l~ell~~ 196 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AE-----------KIN-------------AKAV-SLEELLKN 196 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH-----------HTT-------------CEEC-CHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HH-----------hcC-------------ceec-CHHHHHhh
Confidence 5899999999999999999999999999999987532 11 111 1112 33 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhccc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~ 435 (733)
||+|+.++|...+...-+-++..+.++++++++..+++-.+ ..+.+.+
T Consensus 197 aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL 246 (313)
T 2ekl_A 197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYI 246 (313)
T ss_dssp CSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHH
T ss_pred CCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHH
Confidence 99999999966653322224455678899988754444322 2444444
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-06 Score=94.02 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=55.6
Q ss_pred ceEEEEcCCcC-cHHHHHHHHHC-----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|.+ |.++|..|++. +.+|++||+++++++...+.....+.. .+ ....+..++|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~---~~---------~~~~I~~t~D~ 96 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE---KA---------PDIEFAATTDP 96 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH---HC---------TTSEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhcc---CC---------CCCEEEEECCH
Confidence 48999999998 55678788887 678999999999887753222211111 11 11357777787
Q ss_pred -cccCCCCEEEEeccC
Q 004726 383 -SEFKDVDMVIEAVIE 397 (733)
Q Consensus 383 -~~l~~aDlVI~avpe 397 (733)
+++++||+||.++|-
T Consensus 97 ~eal~~AD~VViaag~ 112 (472)
T 1u8x_X 97 EEAFTDVDFVMAHIRV 112 (472)
T ss_dssp HHHHSSCSEEEECCCT
T ss_pred HHHHcCCCEEEEcCCC
Confidence 789999999999974
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=90.91 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=66.1
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.||.++|..++..|+ +|+++|+++++++.....+...... .... ..+..+++++++++
T Consensus 2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~-~~~~-----------~~v~~~~~~~a~~~ 69 (314)
T 3nep_X 2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPI-HGFD-----------TRVTGTNDYGPTED 69 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHH-HTCC-----------CEEEEESSSGGGTT
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccc-cCCC-----------cEEEECCCHHHhCC
Confidence 79999999999999999999987 9999999998765432222211000 0000 12443567799999
Q ss_pred CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 388 aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
||+||.+..- +..+.+.+.+.+.+++ |+++++.
T Consensus 70 aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~viv 116 (314)
T 3nep_X 70 SDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIV 116 (314)
T ss_dssp CSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEE
T ss_pred CCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEe
Confidence 9999999742 2234455556677776 4555543
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.2e-07 Score=96.86 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=55.3
Q ss_pred ceEEEEcCCcC--cHHHHHHHHH----CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLM--GSGIATAHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~m--G~~iA~~l~~----~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|.| |.+++..++. .| +|++||++++++++... +.+ .... ...+++.|+|+
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~~----~l~~----------~~~~I~~TtD~ 69 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IGN----HSGN----------GRWRYEAVSTL 69 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HHT----TSTT----------SCEEEEEESSH
T ss_pred CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HHH----HHhc----------cCCeEEEECCH
Confidence 59999999998 5799998886 57 99999999998877532 111 1111 22467888888
Q ss_pred -cccCCCCEEEEecc
Q 004726 383 -SEFKDVDMVIEAVI 396 (733)
Q Consensus 383 -~~l~~aDlVI~avp 396 (733)
+++++||+||++++
T Consensus 70 ~eAl~dADfVI~air 84 (450)
T 3fef_A 70 KKALSAADIVIISIL 84 (450)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred HHHhcCCCEEEeccc
Confidence 68999999999995
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.7e-07 Score=95.49 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=82.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|..+...|++|++||+++.... +......++ +.+++
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----------------------------~~~~~~~sl~ell~~ 208 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----------------------------GNVKPAASLDELLKT 208 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----------------------------TTBEECSSHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----------------------------cCcEecCCHHHHHhh
Confidence 5899999999999999999999999999998743110 011223344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCCCC-cEEEEecC------------CCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQD-RIIGAHFF------------SPAHV 452 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~-~~ig~h~~------------~p~~~ 452 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+.+ +....+.+.+.... .-.++.-| +|.+.
T Consensus 209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~ 288 (416)
T 3k5p_A 209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQG 288 (416)
T ss_dssp CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTT
T ss_pred CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhc
Confidence 99999999977765544445666778999988644433 33345555543221 22333322 22234
Q ss_pred CCeeEEecCC-CCCHHHHH
Q 004726 453 MPLLEIVRTE-RTSAQVIL 470 (733)
Q Consensus 453 ~~lveiv~~~-~t~~e~~~ 470 (733)
.+-+-++|+- ..+.++.+
T Consensus 289 ~~nvilTPHig~~T~ea~~ 307 (416)
T 3k5p_A 289 LENVILTPHIGGSTEEAQE 307 (416)
T ss_dssp CTTEEECCSCTTCCHHHHH
T ss_pred CCCEEECCCCCCCCHHHHH
Confidence 4557777762 33455443
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-06 Score=90.57 Aligned_cols=101 Identities=27% Similarity=0.335 Sum_probs=68.2
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccc-cccCc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDY 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~ 382 (733)
++.+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+..... ... ..+. .++++
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~-~~~-------------~~v~i~~~~~ 68 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKA-FAP-------------QPVKTSYGTY 68 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGG-GSS-------------SCCEEEEECG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccc-ccc-------------CCeEEEeCcH
Confidence 345799999999999999999999997 999999999887653322221100 000 0112 24567
Q ss_pred cccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 383 SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 383 ~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+++++||+||.++.- +..+.+++.+.+.++++ +++++.
T Consensus 69 ~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlv 120 (326)
T 3pqe_A 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFLV 120 (326)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEE
Confidence 899999999999832 12344555667777765 555543
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-06 Score=84.30 Aligned_cols=134 Identities=15% Similarity=0.145 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.++..+.+.+.+.|..++.++..+.|+|. +-| +++. ....++ +.|..+++||++.
T Consensus 34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG------G~v~----------------a~~~I~-~~i~~~~~pV~~~ 90 (193)
T 1yg6_A 34 QVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG------GVIT----------------AGMSIY-DTMQFIKPDVSTI 90 (193)
T ss_dssp SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC------CCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence 48889999999999999877667777773 333 2221 122455 6688899999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhh-h-----------------hhcccc--CHHHHHHH
Q 004726 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRLV--GLSKAIEM 162 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~-~-----------------~l~r~~--G~~~a~~l 162 (733)
+.|.|..+|.-++++||. |++.+++.++.....-|. .|-. . .+.+.. ......++
T Consensus 91 v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~ 167 (193)
T 1yg6_A 91 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY---QGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD 167 (193)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999 999999998875543221 1110 0 011111 23344444
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCc
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
+-.+..++++||+++||||++.++
T Consensus 168 ~~~~~~~ta~eA~~~GliD~i~~~ 191 (193)
T 1yg6_A 168 TERDRFLSAPEAVEYGLVDSILTH 191 (193)
T ss_dssp TSSCEEEEHHHHHHHTSSSEECCC
T ss_pred hcCCeEEcHHHHHHcCCCCEecCC
Confidence 445667799999999999999864
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.6e-07 Score=97.15 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=80.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++..+.. .......++ +.+++
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~ 194 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--------------------------DQVYQLPALNKMLAQ 194 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--------------------------SEEECGGGHHHHHHT
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--------------------------hcccccCCHHHHHhh
Confidence 589999999999999999999999999999987432110 011112333 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--CHHHHhcccCC-CCcEEEEecC--------CCCCCCCee
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSS-QDRIIGAHFF--------SPAHVMPLL 456 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~-~~~~ig~h~~--------~p~~~~~lv 456 (733)
||+|+.++|...+...-+-.+..+.++++++++..+.+- .-..+.+.+.. .-...+...| +|.+..+.|
T Consensus 195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv 274 (324)
T 3hg7_A 195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNL 274 (324)
T ss_dssp CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTE
T ss_pred CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCE
Confidence 999999999666544444345556788999886433332 23344444432 2233444433 222344567
Q ss_pred EEecC
Q 004726 457 EIVRT 461 (733)
Q Consensus 457 eiv~~ 461 (733)
-++|+
T Consensus 275 ilTPH 279 (324)
T 3hg7_A 275 IITPH 279 (324)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 67775
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.1e-08 Score=100.43 Aligned_cols=162 Identities=12% Similarity=0.027 Sum_probs=100.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc-CC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-KD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l-~~ 387 (733)
+||+|||+|.||+.+|..|+++|++|++|+++++.++.. ...|... ..+. .+..+.+ ++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-----------~~~g~~~--------~~~~-~~~~~~~~~~ 62 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY-----------TVPHAPA--------QDIV-VKGYEDVTNT 62 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE-----------SSTTSCC--------EEEE-EEEGGGCCSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE-----------ecCCeec--------ccee-cCchHhcCCC
Confidence 479999999999999999999999999999997543210 0112100 0111 1223444 88
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEE------ecCCCCCCC-CeeEEec
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGA------HFFSPAHVM-PLLEIVR 460 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~------h~~~p~~~~-~lveiv~ 460 (733)
+|+||.||| .....++++++.+.++++++|++...++...+. +. ..++++. ....|-... ..-.+..
T Consensus 63 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~-~~~v~~g~~~~~a~~~~pg~v~~~~~~~~~ 136 (294)
T 3g17_A 63 FDVIIIAVK--THQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IP-FKNVCQAVVYISGQKKGDVVTHFRDYQLRI 136 (294)
T ss_dssp EEEEEECSC--GGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CC-CSCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCEEEEeCC--ccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh---CC-CCcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence 999999998 566778888999999899988888888776554 22 2233332 111221110 0011111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhH
Q 004726 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF 499 (733)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~ 499 (733)
+ +.+..+.+.+++..-|-...+..|.-+.....++.
T Consensus 137 ~---~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~ 172 (294)
T 3g17_A 137 Q---DNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLV 172 (294)
T ss_dssp E---CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHH
T ss_pred C---ccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHH
Confidence 1 34556777777777776666666655444444433
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.23 E-value=8e-07 Score=95.81 Aligned_cols=104 Identities=10% Similarity=-0.026 Sum_probs=70.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++..+... +.| +....++ +.+++
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-----------~~G-------------~~~~~~l~ell~~ 247 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------ELN-------------LTWHATREDMYPV 247 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHGGG
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-----------hcC-------------ceecCCHHHHHhc
Confidence 4799999999999999999999999999999865433211 001 2222233 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~ 436 (733)
||+|+.++|-..+...-+-++..+.++++++++..+.+-.+ ..+.+.+.
T Consensus 248 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 298 (393)
T 2nac_A 248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 298 (393)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH
Confidence 99999999966655333224566778999988654443322 24555543
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-06 Score=92.29 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=70.4
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (733)
.+.+||+|||+|.||.++|..++..|+ +|+++|+++++++.....+... .... ....+..+++++
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~----~~~~---------~~~~i~~~~d~~ 83 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHG----SLFL---------KTPKIVSSKDYS 83 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT----GGGC---------SCCEEEECSSGG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhh----hhcc---------CCCeEEEcCCHH
Confidence 345799999999999999999999998 8999999988766533322211 0000 012344567888
Q ss_pred ccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEE
Q 004726 384 EFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 384 ~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
++++||+||.+.. .+..+.+++.+.+.++++ +++++
T Consensus 84 ~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~vl 133 (331)
T 4aj2_A 84 VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP-QCKLL 133 (331)
T ss_dssp GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 9999999998862 133566667777888864 55544
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-06 Score=91.68 Aligned_cols=138 Identities=9% Similarity=0.047 Sum_probs=85.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||+|.||.++|+.+...|++|++||++... +.+ .+.| +.. .++ +.+++
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~-~~l~ell~~ 230 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SML-----------EENG-------------VEP-ASLEDVLTK 230 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHH-----------HHTT-------------CEE-CCHHHHHHS
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHH-----------hhcC-------------eee-CCHHHHHhc
Confidence 58999999999999999999999999999998532 111 0111 121 233 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccCCCCcEEEEecCC--C------CCCCCee
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSSQDRIIGAHFFS--P------AHVMPLL 456 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~~~~~ig~h~~~--p------~~~~~lv 456 (733)
||+|+.++|-..+...-+-++..+.++++++++ |++. +.-..+.+.+....-..++.-|. | .+..+.|
T Consensus 231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~nv 309 (365)
T 4hy3_A 231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFI-LLSRADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLKGF 309 (365)
T ss_dssp CSEEEECSCSSCC---CCCHHHHHTSCTTCEEE-ECSCGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCTTE
T ss_pred CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEE-ECcCCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCCCE
Confidence 999999999777765555566777899999886 4543 33335555443222114444332 2 2334556
Q ss_pred EEecCCC-CCHHHHHHHH
Q 004726 457 EIVRTER-TSAQVILDLM 473 (733)
Q Consensus 457 eiv~~~~-t~~e~~~~~~ 473 (733)
-++|+-. .+.++.+.+.
T Consensus 310 ilTPHia~~t~e~~~~~~ 327 (365)
T 4hy3_A 310 IRSAHRAGALDSAFKKMG 327 (365)
T ss_dssp EECCSCSSCCHHHHHHHH
T ss_pred EECCccccCHHHHHHHHH
Confidence 6777533 3455544443
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8.1e-07 Score=96.46 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=69.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||+|.||..+|..+...|++|++||++++.. . +.+....++ +.+++
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~------------~~~~~~~~l~ell~~ 197 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------L------------GNATQVQHLSDLLNM 197 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------C------------TTCEECSCHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------c------------CCceecCCHHHHHhc
Confidence 489999999999999999999999999999975320 0 112223344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhccc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~ 435 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+ ..+.+.+
T Consensus 198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL 247 (404)
T 1sc6_A 198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADAL 247 (404)
T ss_dssp CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHH
T ss_pred CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHH
Confidence 99999999977665544335566778999988644333322 3444444
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-07 Score=95.95 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=69.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++..+.. .......++ +.+++
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~ 193 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLNQ 193 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHHT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHhh
Confidence 479999999999999999999999999999987642210 000001223 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhccc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT 435 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~ 435 (733)
||+|+.++|-..+...-+-++..+.++++++++..+.+ +.-..+.+.+
T Consensus 194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL 243 (315)
T 3pp8_A 194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAAL 243 (315)
T ss_dssp CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHH
Confidence 99999999977665544435667788999988643333 3333444444
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=91.75 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=82.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++..+ +. ..++ +.+++
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~~ 193 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLKE 193 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHhh
Confidence 5899999999999999999999999999999875321 11 1223 55788
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhcccCCCCcEEEEecCC--C------CCCCCeeE
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFS--P------AHVMPLLE 457 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~~~~~ig~h~~~--p------~~~~~lve 457 (733)
||+|+.++|...+...-+-++..+.++++++++..+++-.+ ..+.+.+...-.-.+...|. | .+..+.+-
T Consensus 194 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~eP~~~~~~L~~~~nvi 273 (311)
T 2cuk_A 194 ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPEPLPPGHPLYALPNAV 273 (311)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSSSCCTTSGGGGCTTEE
T ss_pred CCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCCCCCCCChhhhCCCEE
Confidence 99999999976554332223455678999988654443322 24555554222224455443 2 12334566
Q ss_pred EecCCCC-CHHHHH
Q 004726 458 IVRTERT-SAQVIL 470 (733)
Q Consensus 458 iv~~~~t-~~e~~~ 470 (733)
++|+... +.++.+
T Consensus 274 ltPh~~~~t~~~~~ 287 (311)
T 2cuk_A 274 ITPHIGSAGRTTRE 287 (311)
T ss_dssp ECCSCTTCBHHHHH
T ss_pred ECCcCCCCCHHHHH
Confidence 6775443 344433
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-06 Score=93.22 Aligned_cols=101 Identities=9% Similarity=0.016 Sum_probs=70.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++.. .+ .+.| +.. .++ +.+++
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~-----------~~~g-------------~~~-~~l~ell~~ 219 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VS-----------ASFG-------------VQQ-LPLEEIWPL 219 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HH-----------HHTT-------------CEE-CCHHHHGGG
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hh-----------hhcC-------------cee-CCHHHHHhc
Confidence 489999999999999999999999999999987642 21 1111 111 133 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhccc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT 435 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~ 435 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+++-.+. .+.+.+
T Consensus 220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL 269 (335)
T 2g76_A 220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRAL 269 (335)
T ss_dssp CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHH
Confidence 999999999776544433345667789999886544443333 444444
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=5.6e-06 Score=84.14 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.++..+.+.+...|..++.++..+.|+|. +-|+ ++. ....++ +.|...++||++.
T Consensus 90 ~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGG------sV~----------------ag~aIy-d~I~~~k~pV~t~ 146 (277)
T 1tg6_A 90 PIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGG------VVT----------------AGLAIY-DTMQYILNPICTW 146 (277)
T ss_dssp SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH----------------HHHHHH-HHHHHSCSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------CHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence 48888999999999988765556777763 3332 221 122455 6688889999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhh-h-----------------hhccc--cCHHHHHHH
Q 004726 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRL--VGLSKAIEM 162 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~-~-----------------~l~r~--~G~~~a~~l 162 (733)
+.|.|..+|.-++++||. |++.+++.++.....-|. .|-. . .+.+. .......++
T Consensus 147 v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~---~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~ 223 (277)
T 1tg6_A 147 CVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA---RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESA 223 (277)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccc---cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999 999999999876543222 1111 0 01111 123344455
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCc
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
+-.+..++|+||+++||||+|...
T Consensus 224 ~drd~~lta~EAle~GLID~I~~~ 247 (277)
T 1tg6_A 224 MERDRYMSPMEAQEFGILDKVLVH 247 (277)
T ss_dssp HSSCEEECHHHHHHHTSCSEECSS
T ss_pred HhcCcccCHHHHHHCCCCCEecCc
Confidence 555677899999999999999854
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.4e-07 Score=96.00 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=71.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||+++...+.+.+ .| +... ++ +.+++
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~-~l~ell~~ 200 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR-----------LG-------------LRQV-ACSELFAS 200 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHH-----------HT-------------EEEC-CHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHh-----------cC-------------ceeC-CHHHHHhh
Confidence 58999999999999999999999999999998743322211 01 1222 33 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhccc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT 435 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~ 435 (733)
||+|+.++|-..+...-+-++..+.++++++++..+.+ +....+.+.+
T Consensus 201 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL 250 (330)
T 4e5n_A 201 SDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAAL 250 (330)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence 99999999976665544445677788999988644433 2333444444
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-06 Score=92.87 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=68.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||++++... . . ..| +....++ +.+++
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-~----------~~g-------------~~~~~~l~ell~~ 223 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-E-R----------ALG-------------LQRVSTLQDLLFH 223 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-H-H----------HHT-------------CEECSSHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-H-h----------hcC-------------CeecCCHHHHHhc
Confidence 4799999999999999999999999999999765311 0 0 001 1222234 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--HHHHhccc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT 435 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~ 435 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+++-. ...+.+.+
T Consensus 224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL 273 (347)
T 1mx3_A 224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL 273 (347)
T ss_dssp CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHH
Confidence 9999999996655433333555667899998865444432 33444444
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.1e-05 Score=82.79 Aligned_cols=109 Identities=20% Similarity=0.275 Sum_probs=70.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.||+|||+|.+|.+++..|+..|+ +|+++|+++++++.....+.... ...... -.+.. +++++++
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~~~~~-----------~~v~~-~~~~a~~ 73 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PYSPTT-----------VRVKA-GEYSDCH 73 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GGSSSC-----------CEEEE-CCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hhcCCC-----------eEEEe-CCHHHhC
Confidence 589999999999999999999885 89999999887764222222110 000000 02222 4568899
Q ss_pred CCCEEEEeccC--Ch------------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc
Q 004726 387 DVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGE 433 (733)
Q Consensus 387 ~aDlVI~avpe--~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~ 433 (733)
+||+||.+++- ++ .+.+++.+++.+++ ++++++. .|.|+..+..
T Consensus 74 ~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv--~tNPv~~~t~ 131 (317)
T 3d0o_A 74 DADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLV--ATNPVDILAY 131 (317)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEE--CSSSHHHHHH
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE--ecCcHHHHHH
Confidence 99999999842 22 45566667777776 5555543 2456554443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.2e-06 Score=93.92 Aligned_cols=103 Identities=16% Similarity=0.065 Sum_probs=70.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCe-eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|+|||+|.||.++|+.+...|++ |++||++++..+.+. +.| +....++ +.++
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~ 220 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-----------KVG-------------ARRVENIEELVA 220 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-----------HTT-------------EEECSSHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-----------hcC-------------cEecCCHHHHHh
Confidence 4799999999999999999999997 999999875433221 111 2222344 5678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhccc
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT 435 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~ 435 (733)
+||+|+.++|...+...-+-++..+.++++++++..+.+ +....+.+.+
T Consensus 221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL 271 (364)
T 2j6i_A 221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAAL 271 (364)
T ss_dssp TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHH
Confidence 999999999976554443334566778999988644443 2333444444
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-06 Score=91.02 Aligned_cols=100 Identities=14% Similarity=0.042 Sum_probs=69.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++.. . +. .+...+++ +.+++
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~------------------------~~~~~~~l~ell~~ 199 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EK------------------------KGYYVDSLDDLYKQ 199 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HH------------------------TTCBCSCHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hh------------------------hCeecCCHHHHHhh
Confidence 589999999999999999999999999999987653 1 00 01112233 55788
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhccc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT 435 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~ 435 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+++ +....+.+.+
T Consensus 200 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL 249 (333)
T 1j4a_A 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGL 249 (333)
T ss_dssp CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHH
Confidence 99999999977664432224455678899988654443 2333454444
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-05 Score=72.48 Aligned_cols=103 Identities=14% Similarity=0.033 Sum_probs=64.6
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCC-HHHHHHHhhccccccCccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+.+.- ...-.|-.+ ++.... ..+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~-----~~~~~gd~~~~~~l~~-----------~~~~ 69 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEG-----FDAVIADPTDESFYRS-----------LDLE 69 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTT-----CEEEECCTTCHHHHHH-----------SCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-----CcEEECCCCCHHHHHh-----------CCcc
Confidence 46899999999999999999999999999999999877643210 000011111 110000 1257
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
++|+||.+++ +.+....+...+.... ...+++...+....
T Consensus 70 ~~d~vi~~~~-~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~ 109 (141)
T 3llv_A 70 GVSAVLITGS-DDEFNLKILKALRSVS-DVYAIVRVSSPKKK 109 (141)
T ss_dssp TCSEEEECCS-CHHHHHHHHHHHHHHC-CCCEEEEESCGGGH
T ss_pred cCCEEEEecC-CHHHHHHHHHHHHHhC-CceEEEEEcChhHH
Confidence 8999999998 4444444444444444 55566655444333
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=9.4e-07 Score=93.67 Aligned_cols=110 Identities=17% Similarity=0.112 Sum_probs=73.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++.. .+. ..... ++ +.+++
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------~~~-------------~~~~~-~l~ell~~ 200 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--------------FEP-------------FLTYT-DFDTVLKE 200 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--------------GTT-------------TCEEC-CHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--------------hhc-------------ccccc-CHHHHHhc
Confidence 589999999999999999999999999999987531 000 11222 33 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEEec
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHF 446 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~-~~~~~ig~h~ 446 (733)
||+|+.++|-..+...-+-++..+.++++++++..+.+ +....+.+.+. ..-...++.-
T Consensus 201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV 262 (343)
T 2yq5_A 201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDT 262 (343)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESC
T ss_pred CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecc
Confidence 99999999976665544445666778999988643333 33334444443 2223345543
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.2e-05 Score=83.28 Aligned_cols=100 Identities=16% Similarity=0.251 Sum_probs=67.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|.++|..|+.++. +++++|++++.++.-...+..... .. + ....+..++++++++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~-~~--~---------~~~~i~~~~d~~~~~ 68 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-GI--D---------KYPKIVGGADYSLLK 68 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHG-GG--T---------CCCEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccc-cC--C---------CCCeEecCCCHHHhC
Confidence 389999999999999999998875 899999998765532222211100 00 0 001344567789999
Q ss_pred CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 387 ~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+||+||.+.- .+..+.+++.+++.++++.. +++.
T Consensus 69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~a-ivlv 116 (294)
T 2x0j_A 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPES-KILV 116 (294)
T ss_dssp TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTC-EEEE
T ss_pred CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCce-EEEE
Confidence 9999998872 14556666777788777554 4443
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=4.1e-06 Score=88.10 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=63.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.||..++..|++. |+ +|++||+++++.++..+.+ +. .+...+++ +.+
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~----------~~-----------~~~~~~~~~e~v 194 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV----------QG-----------EVRVCSSVQEAV 194 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS----------SS-----------CCEECSSHHHHH
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHh----------hC-----------CeEEeCCHHHHH
Confidence 4799999999999999999886 76 8999999999877643210 10 13334455 567
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
++||+||.|+|.. ..++.. +.++++++|++.+
T Consensus 195 ~~aDiVi~atp~~----~~v~~~--~~l~~g~~vi~~g 226 (312)
T 2i99_A 195 AGADVIITVTLAT----EPILFG--EWVKPGAHINAVG 226 (312)
T ss_dssp TTCSEEEECCCCS----SCCBCG--GGSCTTCEEEECC
T ss_pred hcCCEEEEEeCCC----CcccCH--HHcCCCcEEEeCC
Confidence 8999999999853 233322 4678888876643
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.00 E-value=4.3e-05 Score=69.54 Aligned_cols=96 Identities=20% Similarity=0.207 Sum_probs=60.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCC-CHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|+|+|.||..+|..|.+.|++|+++|++++.++...+.. ....-.+.. +.+... ...+.+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~l~-----------~~~~~~ 69 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLE-----------DAGIED 69 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHH-----------HTTTTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHHHH-----------HcCccc
Confidence 4799999999999999999999999999999998766532100 000000100 000000 023678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+|+||.++|.+ .. ...+..+.+.++++.+++.
T Consensus 70 ~d~vi~~~~~~-~~-~~~~~~~~~~~~~~~ii~~ 101 (140)
T 1lss_A 70 ADMYIAVTGKE-EV-NLMSSLLAKSYGINKTIAR 101 (140)
T ss_dssp CSEEEECCSCH-HH-HHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEeeCCc-hH-HHHHHHHHHHcCCCEEEEE
Confidence 99999999854 22 2333445555666677654
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=7.8e-06 Score=79.66 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.+++.+.+.+...|..++.++..+.|+|. +-| +++. ....++ +.|..+++||++.
T Consensus 38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------~~~~I~-~~i~~~~~~v~t~ 94 (201)
T 3p2l_A 38 EVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG------GMVT----------------AGMGVY-DTMQFIKPDVSTI 94 (201)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHHhCCCeEEE
Confidence 48899999999999999876666766663 333 2221 122455 6688899999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhh----------h--------hcccc--CHHHHHHH
Q 004726 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ----------R--------LPRLV--GLSKAIEM 162 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~----------~--------l~r~~--G~~~a~~l 162 (733)
+.|.|.++|.-++++||. |++.+++.+......-|. .|-.. . +.+.- ......++
T Consensus 95 ~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~ 171 (201)
T 3p2l_A 95 CIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKD 171 (201)
T ss_dssp EEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EcCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 999999999999999998 999999998776553221 11110 0 01111 23344445
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCc-chH
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTS-EEL 189 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~-~~l 189 (733)
+-....++|+||++.||||+|++. ++|
T Consensus 172 ~~~~~~lta~EA~e~GliD~I~~~~~~l 199 (201)
T 3p2l_A 172 TDRDNFMMADEAKAYGLIDHVIESREAI 199 (201)
T ss_dssp TSSCEEEEHHHHHHHTSCSEECCCSCC-
T ss_pred hhcCeeecHHHHHHcCCccEecCCHHHh
Confidence 555566799999999999999854 444
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=6.2e-06 Score=86.85 Aligned_cols=108 Identities=22% Similarity=0.315 Sum_probs=67.2
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~ 384 (733)
..||+|||+|.+|.++|..++..|+ +|+++|+++++++..... +.+.. .. .--.+.. +++++
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~d--------l~~~~~~~------~~~~i~~-~~~~a 71 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD--------INHGLPFM------GQMSLYA-GDYSD 71 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH--------HTTSCCCT------TCEEEC---CGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHH--------HHHhHHhc------CCeEEEE-CCHHH
Confidence 3589999999999999999999998 999999998776532111 11110 00 0012332 45688
Q ss_pred cCCCCEEEEeccCCh--------------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc
Q 004726 385 FKDVDMVIEAVIESV--------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGE 433 (733)
Q Consensus 385 l~~aDlVI~avpe~~--------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~ 433 (733)
+++||+||.+++-.. .+.+++.+.+.+++ ++++++. .|.|+..+..
T Consensus 72 ~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv--~tNPv~~~~~ 131 (318)
T 1y6j_A 72 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILV--VSNPVDIITY 131 (318)
T ss_dssp GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEE--CSSSHHHHHH
T ss_pred hCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEE--ecCcHHHHHH
Confidence 999999999986322 22456667788886 5555543 2556554443
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.97 E-value=9.6e-06 Score=85.91 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=68.8
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
.+||+|||+ |.+|.++|..++..|. +|+++|+++++++.....+... ... ..++.+++++ +
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~--------~~~-------~~~i~~t~d~~~ 72 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC--------GFE-------GLNLTFTSDIKE 72 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH--------CCT-------TCCCEEESCHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC--------cCC-------CCceEEcCCHHH
Confidence 469999998 9999999999999985 8999999998766433222211 010 1246666676 6
Q ss_pred ccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCe
Q 004726 384 EFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHC 417 (733)
Q Consensus 384 ~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ 417 (733)
++++||+||.++. .+..+.+.+.+.+.++++...
T Consensus 73 al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~ 120 (343)
T 3fi9_A 73 ALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK 120 (343)
T ss_dssp HHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence 7999999999862 234566677778888886554
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.5e-05 Score=85.84 Aligned_cols=76 Identities=21% Similarity=0.140 Sum_probs=54.6
Q ss_pred ceEEEEcCCcC-cHHHHHHHHHC-----CCeeEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
.||+|||+|.+ |.+++..|++. +.+|++||+++ ++++.........+. ..+. ...+..++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~---~~~~---------~~~i~~t~ 75 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVE---KAGV---------PIEIHLTL 75 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH---HTTC---------CCEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHh---hcCC---------CcEEEEeC
Confidence 58999999998 77888888874 56899999999 887764322211111 1110 12466677
Q ss_pred Cc-cccCCCCEEEEecc
Q 004726 381 DY-SEFKDVDMVIEAVI 396 (733)
Q Consensus 381 ~~-~~l~~aDlVI~avp 396 (733)
|+ +++++||+||.+++
T Consensus 76 D~~eal~gAD~VVitag 92 (450)
T 1s6y_A 76 DRRRALDGADFVTTQFR 92 (450)
T ss_dssp CHHHHHTTCSEEEECCC
T ss_pred CHHHHhCCCCEEEEcCC
Confidence 87 78999999999998
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=84.38 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=66.1
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccCcc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYS 383 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 383 (733)
..+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.... . .+..+.. +.+++
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~----~-----------~~~~~~i~~~~~~ 72 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL----P-----------FTSPKKIYSAEYS 72 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG----G-----------GSCCCEEEECCGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh----h-----------hcCCcEEEECcHH
Confidence 34689999999999999999999988 89999999987765332221110 0 0112222 44568
Q ss_pred ccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 384 EFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 384 ~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
++++||+||.+..- +..+.+++.+.+.++++ +++++.
T Consensus 73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilv 123 (326)
T 3vku_A 73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLV 123 (326)
T ss_dssp GGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEE
T ss_pred HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEE
Confidence 99999999998731 23345566667777765 555543
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.93 E-value=4.9e-05 Score=85.50 Aligned_cols=159 Identities=15% Similarity=0.062 Sum_probs=106.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.-++++...+.+..+++.+... .+-+|.|.- |.|+.+.+-...... ...+.....++ ..+....+|+|++
T Consensus 118 gGs~g~~~~~Ki~r~~e~A~~~-~lPvI~l~d-----SgGArlqe~~~~l~~--~~~~g~i~~~~--~~ls~~giP~Isv 187 (587)
T 1pix_A 118 AGAWVPGQAECLLRASDTAKTL-HVPLVYVLN-----CSGVKFDEQEKVYPN--RRGGGTPFFRN--AELNQLGIPVIVG 187 (587)
T ss_dssp TTEECTTHHHHHHHHHHHHHHH-TCCEEEEEC-----CCEECGGGHHHHSSS--TTSTTHHHHHH--HHHHHTTCCEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEe-----CCCCCccccchhccc--cccHHHHHHHH--HHHhCCCCCEEEE
Confidence 4788999999999999988865 456777764 445666543221110 01122222232 3477889999999
Q ss_pred eCCcccchhhHHhhhcCEEEEeC-CceEeCccccCCCCCChhhhhhhccccCHHHHHHHH-HcCCCCCHHH-------HH
Q 004726 105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM-LLSKSITSEE-------GW 175 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~-ltG~~i~a~e-------A~ 175 (733)
|.|.|.|||... ..||++|+++ ++.+++.-.. ++- ...---.++..+|.+++ .||+.+++++ +.
T Consensus 188 v~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~--vi~----~~~~~~~~d~~~A~el~~~tge~v~~e~lgga~~h~~ 260 (587)
T 1pix_A 188 IYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAG--IMG----GMNPKGHVDLEYANEIADMVDRTGKTEPPGAVDIHYT 260 (587)
T ss_dssp ECSEEETHHHHH-HHSSSEEEEETTCEEESCCCT--TCC----SCCSSSSCCHHHHHHHHHHHHTTCCCCCSSBHHHHTT
T ss_pred EecCCcHHHHHH-HhcCceEEecCCcEEEecCHH--HHh----hhccccccchhHHHHHHHHhCCccChhhcccHHHHHh
Confidence 999999999999 9999999886 4888872211 000 00001127899999999 9999988765 23
Q ss_pred HcCCccEEcCcchHHHHHHHHHHHHHcc
Q 004726 176 KLGLIDAVVTSEELLKVSRLWALDIAAR 203 (733)
Q Consensus 176 ~~Glv~~vv~~~~l~~~a~~~a~~~a~~ 203 (733)
+.|++|.+++.++ .+.+.++++...
T Consensus 261 ~~GvvD~vv~~e~---~a~~~~r~~ls~ 285 (587)
T 1pix_A 261 ETGFMREVYASEE---GVLEGIKKYVGM 285 (587)
T ss_dssp TSCCSCEEESSHH---HHHHHHHHHHHT
T ss_pred hcCceeEecCCHH---HHHHHHHHHHHh
Confidence 6999999998765 444555555443
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.7e-06 Score=92.50 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=72.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||+|.||+++|+.+...|++|++||++.+..+ . ... ..++ +.+++
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~----------------~------------~~~-~~sl~ell~~ 170 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG----------------D------------EGD-FRTLDELVQE 170 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT----------------C------------CSC-BCCHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc----------------c------------Ccc-cCCHHHHHhh
Confidence 4799999999999999999999999999997543210 0 111 2233 56789
Q ss_pred CCEEEEeccCChH----HHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccCC-CCcEEEEecCC
Q 004726 388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSS-QDRIIGAHFFS 448 (733)
Q Consensus 388 aDlVI~avpe~~~----~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~-~~~~ig~h~~~ 448 (733)
||+|+.++|-..+ ...-+-++..+.++++++++ |+|. +.-..+.+.+.. .-...++..|.
T Consensus 171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vvde~aL~~aL~~g~i~gA~LDV~e 238 (381)
T 3oet_A 171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILI-NACRGPVVDNAALLARLNAGQPLSVVLDVWE 238 (381)
T ss_dssp CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHTTCCEEEEESCCT
T ss_pred CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHhCCCeEEEeeccc
Confidence 9999999996655 43333345666789999886 4553 233355554432 33445555443
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-06 Score=89.86 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=69.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||++++.. + + ...... ++ +.+++
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~------------------------~~~~~~-~l~ell~~ 197 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-H------------------------PDFDYV-SLEDLFKQ 197 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-C------------------------TTCEEC-CHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-H------------------------hccccC-CHHHHHhc
Confidence 479999999999999999999999999999986531 0 0 001112 33 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~ 436 (733)
||+|+.++|...+...-+-++..+.++++++++..+++ +....+.+.+.
T Consensus 198 aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 248 (333)
T 1dxy_A 198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 248 (333)
T ss_dssp CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 99999999977765443334566778999988644443 23335555443
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.8e-06 Score=91.04 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=67.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|+.+...|++|++||++++.. ..+ .. ..++ +.+++
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g-------------~~-~~~l~ell~~ 167 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPD-------------GE-FVSLERLLAE 167 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STT-------------SC-CCCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccC-------------cc-cCCHHHHHHh
Confidence 479999999999999999999999999999865421 001 11 1233 55789
Q ss_pred CCEEEEeccCChH----HHHHHHHHHHHhCCCCeEEEecCCCC--CHHHHhcccC
Q 004726 388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~----~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~ 436 (733)
||+|+.++|-..+ ...-+-++..+.++++++++..+.+- ....+.+.+.
T Consensus 168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~ 222 (380)
T 2o4c_A 168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLE 222 (380)
T ss_dssp CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 9999999996655 33322245667789999886433332 2234555443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.6e-05 Score=80.97 Aligned_cols=106 Identities=21% Similarity=0.207 Sum_probs=69.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccCcccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l 385 (733)
.||+|||+|.+|.+++..++..++ +|+++|+++++++.....+... .. ....+.. ..+++++
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~----~~-----------~~~~~~v~~~~~~a~ 70 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA----QA-----------FTAPKKIYSGEYSDC 70 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG----GG-----------GSCCCEEEECCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHH----HH-----------hcCCeEEEECCHHHh
Confidence 589999999999999999999887 8999999998877432222111 00 0011222 2456889
Q ss_pred CCCCEEEEeccC--Ch------------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh
Q 004726 386 KDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVG 432 (733)
Q Consensus 386 ~~aDlVI~avpe--~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 432 (733)
++||+||.+++- ++ .+.+++.+.+.+++ |+++++.. +.|+..+.
T Consensus 71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~--tNPv~~~t 128 (318)
T 1ez4_A 71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVA--ANPVDILT 128 (318)
T ss_dssp TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe--CCcHHHHH
Confidence 999999999842 11 45566667777776 45544432 44554443
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.6e-05 Score=81.18 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=69.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccCcccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l 385 (733)
.||+|||+|.+|.+++..++..++ +|+++|+++++++.....+... .. ....+.. ..+++++
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~----~~-----------~~~~~~i~~~~~~a~ 74 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNA----LP-----------FTSPKKIYSAEYSDA 74 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTT----GG-----------GSCCCEEEECCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHH----HH-----------hcCCeEEEECCHHHh
Confidence 589999999999999999998886 8999999998876532222110 00 0012222 2456889
Q ss_pred CCCCEEEEeccC--Ch------------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh
Q 004726 386 KDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVG 432 (733)
Q Consensus 386 ~~aDlVI~avpe--~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 432 (733)
++||+||.+++- ++ .+.+++.+.+.++++ +++++.. +.|+..+.
T Consensus 75 ~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~--tNPv~~~t 132 (326)
T 2zqz_A 75 KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVA--ANPVDILT 132 (326)
T ss_dssp GGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTC-CSEEEEC--SSSHHHHH
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe--CCcHHHHH
Confidence 999999999842 22 455566677788874 5544432 45554443
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.83 E-value=6.5e-06 Score=76.08 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=52.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..++..|...|++|+++|+++++++...+.+ + ..+...++. +.+++
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~----------~-----------~~~~~~~~~~~~~~~ 80 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY----------E-----------YEYVLINDIDSLIKN 80 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH----------T-----------CEEEECSCHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh----------C-----------CceEeecCHHHHhcC
Confidence 4799999999999999999999999999999999876542211 0 011122333 55788
Q ss_pred CCEEEEeccCC
Q 004726 388 VDMVIEAVIES 398 (733)
Q Consensus 388 aDlVI~avpe~ 398 (733)
+|+||.|+|..
T Consensus 81 ~Divi~at~~~ 91 (144)
T 3oj0_A 81 NDVIITATSSK 91 (144)
T ss_dssp CSEEEECSCCS
T ss_pred CCEEEEeCCCC
Confidence 99999999854
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.82 E-value=4e-05 Score=80.31 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=69.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|.+++..++..+ .+|+++|+++++++.....+... .... . --.+.. +++++++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~----~~~~--~-------~~~v~~-~~~~a~~ 66 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHA----TPFA--H-------PVWVWA-GSYGDLE 66 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTT----GGGS--C-------CCEEEE-CCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHh----Hhhc--C-------CeEEEE-CCHHHhC
Confidence 38999999999999999999987 58999999988776422222110 0000 0 012332 4578899
Q ss_pred CCCEEEEeccC--C------------hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh
Q 004726 387 DVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 432 (733)
Q Consensus 387 ~aDlVI~avpe--~------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 432 (733)
+||+||.+++- + ..+.+++.+.+.++++. ++++.. |.|+..+.
T Consensus 67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~-a~iiv~--tNPv~~~t 123 (310)
T 2xxj_A 67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE-AVLLVA--TNPVDVMT 123 (310)
T ss_dssp TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEEC--SSSHHHHH
T ss_pred CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCC-cEEEEe--cCchHHHH
Confidence 99999998742 2 44566666778888654 544432 44554433
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.9e-06 Score=88.95 Aligned_cols=99 Identities=16% Similarity=0.053 Sum_probs=67.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||++++.. . + ..+... ++ +.+++
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~------------------------~~~~~~-~l~ell~~ 198 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-E------------------------DYCTQV-SLDEVLEK 198 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-T------------------------TTCEEC-CHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-H------------------------hccccC-CHHHHHhh
Confidence 589999999999999999999999999999986531 0 0 001111 33 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhccc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT 435 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~ 435 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+.+ +....+.+.+
T Consensus 199 aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL 248 (331)
T 1xdw_A 199 SDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248 (331)
T ss_dssp CSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHH
Confidence 99999999976554333324556678999988643333 2333444444
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00011 Score=70.62 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=35.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+|.||..+|..|.+. |++|+++|+++++++.+
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~ 79 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH 79 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence 4799999999999999999999 99999999999887654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.7e-05 Score=67.04 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=36.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKG 347 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~ 347 (733)
+++|.|+|+|.||..++..|.+.| ++|+++|+++++++..
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~ 45 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL 45 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence 468999999999999999999999 9999999999887654
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.74 E-value=5.2e-05 Score=69.41 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=60.0
Q ss_pred cceEEEEcC----CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 308 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 308 ~~kI~VIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
-++|+|||+ |.||..++..|.+.|++|+.+|++.+.+ ..+....++
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----------------------------~G~~~~~s~~ 64 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVR 64 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----------------------------CCeeecCCHH
Confidence 368999999 9999999999999999866666553211 123334445
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
+....+|++|.++| .+...+++.++.+ .....++. .+++.
T Consensus 65 el~~~vDlvii~vp--~~~v~~v~~~~~~-~g~~~i~~-~~~~~ 104 (138)
T 1y81_A 65 ELPKDVDVIVFVVP--PKVGLQVAKEAVE-AGFKKLWF-QPGAE 104 (138)
T ss_dssp GSCTTCCEEEECSC--HHHHHHHHHHHHH-TTCCEEEE-CTTSC
T ss_pred HhCCCCCEEEEEeC--HHHHHHHHHHHHH-cCCCEEEE-cCccH
Confidence 44467999999999 5666777777665 44455554 44554
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00015 Score=66.43 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=59.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+. ....-.|-.+..+... ...+.++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~-----g~~~i~gd~~~~~~l~----------~a~i~~a 72 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER-----GVRAVLGNAANEEIMQ----------LAHLECA 72 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEESCTTSHHHHH----------HTTGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc-----CCCEEECCCCCHHHHH----------hcCcccC
Confidence 479999999999999999999999999999999987764320 0000011111100000 0135789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
|+||.++|++..... +...+....+.-.|++
T Consensus 73 d~vi~~~~~~~~n~~-~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 73 KWLILTIPNGYEAGE-IVASARAKNPDIEIIA 103 (140)
T ss_dssp SEEEECCSCHHHHHH-HHHHHHHHCSSSEEEE
T ss_pred CEEEEECCChHHHHH-HHHHHHHHCCCCeEEE
Confidence 999999996654432 2233333334444554
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00014 Score=70.53 Aligned_cols=141 Identities=14% Similarity=0.125 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEE--EEcCCCc----ccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCc
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIV--LTGNGGR----FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vv--l~g~g~~----F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp 100 (733)
.++.++...+...|..++.++..+-|. |.+.|.. ...-+|+ .....++ +.+...+.|
T Consensus 36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v----------------~aglaIy-d~m~~~~~~ 98 (205)
T 4gm2_A 36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI----------------TDVISIV-DVINYISSD 98 (205)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHH----------------HHHHHHH-HHHHHSSSC
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCH----------------HHHHHHH-HHHHhcCCC
Confidence 489999999999999887544333333 3444411 0000111 1233566 668889999
Q ss_pred EEEEeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhhh------------------hhcccc--CHHH
Q 004726 101 IVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLV--GLSK 158 (733)
Q Consensus 101 ~Iaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~~------------------~l~r~~--G~~~ 158 (733)
|...+-|.|.+.|.-|++++| .|++.+++++-+-...-|.. .|.+. .+.+.- ....
T Consensus 99 V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~--~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~ 176 (205)
T 4gm2_A 99 VYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIP--FNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNV 176 (205)
T ss_dssp EEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCC--SSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred EEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCccccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999 59999999998765543331 11110 011111 2233
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
..+++-....++|+||++.||||+|++.
T Consensus 177 I~~~m~rd~~msa~EA~eyGlID~V~~~ 204 (205)
T 4gm2_A 177 ISNVLERDKYFNADEAVDFKLIDHILEK 204 (205)
T ss_dssp HHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred HHHHhcCCcccCHHHHHHcCCccEeecC
Confidence 3445556677899999999999999865
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00013 Score=66.68 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=35.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
+++|.|+|+|.+|..++..|.+.|++|+++|++++.++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~ 44 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNA 44 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 457999999999999999999999999999999877654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.62 E-value=6e-05 Score=78.69 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=59.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|+++|+++++.+... +.|. ..+. ..++ +.+++
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~ 215 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-----------EMGL----------VPFH-TDELKEHVKD 215 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTC----------EEEE-GGGHHHHSTT
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCC----------eEEc-hhhHHHHhhC
Confidence 5899999999999999999999999999999987654421 1110 0001 1223 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
||+||.++|...-- ++..+.++++++++.
T Consensus 216 aDvVi~~~p~~~i~-----~~~~~~mk~g~~lin 244 (300)
T 2rir_A 216 IDICINTIPSMILN-----QTVLSSMTPKTLILD 244 (300)
T ss_dssp CSEEEECCSSCCBC-----HHHHTTSCTTCEEEE
T ss_pred CCEEEECCChhhhC-----HHHHHhCCCCCEEEE
Confidence 99999999953211 123345677777654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00013 Score=68.11 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=35.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
++|.|+|+|.+|..+|..|.+.|++|+++|+++++++.
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~ 57 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR 57 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 58999999999999999999999999999999987654
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.61 E-value=7.2e-05 Score=77.84 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=59.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|.+|+++|+++++.+.+. +.|. ..+. ..++ +.+++
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~ 213 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-----------EMGM----------EPFH-ISKAAQELRD 213 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTS----------EEEE-GGGHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC----------eecC-hhhHHHHhcC
Confidence 5899999999999999999999999999999987654321 1110 0000 1223 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+|+||.++|...-- ++..+.++++.+++.
T Consensus 214 aDvVi~~~p~~~i~-----~~~l~~mk~~~~lin 242 (293)
T 3d4o_A 214 VDVCINTIPALVVT-----ANVLAEMPSHTFVID 242 (293)
T ss_dssp CSEEEECCSSCCBC-----HHHHHHSCTTCEEEE
T ss_pred CCEEEECCChHHhC-----HHHHHhcCCCCEEEE
Confidence 99999999953321 122345677877754
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=97.59 E-value=3.8e-05 Score=79.17 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=51.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|..|++.|++|+++|+++++++...+. .| +...+++ +.+++
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~ 186 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK----------FP-------------LEVVNSPEEVIDK 186 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTT----------SC-------------EEECSCGGGTGGG
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH----------cC-------------CeeehhHHhhhcC
Confidence 479999999999999999999999999999999876553110 01 2223244 56789
Q ss_pred CCEEEEeccCC
Q 004726 388 VDMVIEAVIES 398 (733)
Q Consensus 388 aDlVI~avpe~ 398 (733)
+|+||.|+|..
T Consensus 187 aDiVi~atp~~ 197 (275)
T 2hk9_A 187 VQVIVNTTSVG 197 (275)
T ss_dssp CSEEEECSSTT
T ss_pred CCEEEEeCCCC
Confidence 99999999854
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00026 Score=80.82 Aligned_cols=144 Identities=17% Similarity=0.093 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCcccCC-CCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeCCccc
Q 004726 32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG-FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (733)
Q Consensus 32 ~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~ 110 (733)
...++.+.|+.+++|+.++.|+|.=. |-| +++..... ..+.+ ..+....|||||.+++ +.
T Consensus 71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~~~-------------I~~~i-~~~k~~gkpvva~~~~-aa 131 (593)
T 3bf0_A 71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSMQY-------------IGKAL-KEFRDSGKPVYAVGEN-YS 131 (593)
T ss_dssp EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHHHH-------------HHHHH-HHHHHTTCCEEEEESC-EE
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHHHH-------------HHHHH-HHHHhcCCeEEEEEcc-ch
Confidence 46788999999999999999999632 112 34332211 22333 3455567999999876 66
Q ss_pred chhhHHhhhcCEEEEeCCceEeCccccC------------CCCC---------Chhhhh-----------hhc-------
Q 004726 111 GGGLELAMGCHARIAAPKTQLGLPELTL------------GVIP---------GFGGTQ-----------RLP------- 151 (733)
Q Consensus 111 GgG~~lalacD~ria~~~a~f~~pe~~~------------Gl~P---------~~g~~~-----------~l~------- 151 (733)
-+|.-|+.+||.+++.+.+.++...+.. |+-+ ..+-.+ .+.
T Consensus 132 s~~y~lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~~~~~l~~~~ 211 (593)
T 3bf0_A 132 QGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELW 211 (593)
T ss_dssp HHHHHHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHHHHHHHHHHH
Confidence 7889999999999999999998866642 2210 000000 000
Q ss_pred ----------cccCHHHHHHHHHc-------CCCCCHHHHHHcCCccEEcCcchHHHHHH
Q 004726 152 ----------RLVGLSKAIEMMLL-------SKSITSEEGWKLGLIDAVVTSEELLKVSR 194 (733)
Q Consensus 152 ----------r~~G~~~a~~l~lt-------G~~i~a~eA~~~Glv~~vv~~~~l~~~a~ 194 (733)
|-+......+++-. +..++|++|++.||||++...+++.+...
T Consensus 212 ~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~~~~l~ 271 (593)
T 3bf0_A 212 QNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALT 271 (593)
T ss_dssp HHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 11122222233333 79999999999999999997666655443
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.56 E-value=7.5e-05 Score=69.01 Aligned_cols=101 Identities=12% Similarity=0.019 Sum_probs=64.4
Q ss_pred ceEEEEcC----CcCcHHHHHHHHHCCCeeEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~----G~mG~~iA~~l~~~G~~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
++|+|||+ |.||..++..|.+.|++|+.+|++. +.+ ..+....++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl 64 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL 64 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence 47999999 8999999999999999977777654 211 123334444
Q ss_pred -cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhccc-CCCCcEEE
Q 004726 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT-SSQDRIIG 443 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~~~ig 443 (733)
+....+|+||.++| .+...+++.++.+ .....+++. +++.. .++.+.. ....+++|
T Consensus 65 ~el~~~~Dlvii~vp--~~~v~~v~~~~~~-~g~~~i~i~-~~~~~-~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 65 ADVPEKVDMVDVFRN--SEAAWGVAQEAIA-IGAKTLWLQ-LGVIN-EQAAVLAREAGLSVVM 122 (145)
T ss_dssp TTCSSCCSEEECCSC--STHHHHHHHHHHH-HTCCEEECC-TTCCC-HHHHHHHHTTTCEEEC
T ss_pred HHcCCCCCEEEEEeC--HHHHHHHHHHHHH-cCCCEEEEc-CChHH-HHHHHHHHHcCCEEEc
Confidence 33467999999999 3555666666655 344555543 45553 3444333 23344543
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00031 Score=73.31 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=66.0
Q ss_pred eEEEEc-CCcCcHHHHHHHHHCCC--eeEEEeC--ChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 310 KVAVIG-GGLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 310 kI~VIG-~G~mG~~iA~~l~~~G~--~V~~~d~--~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
||+|+| +|.+|.+++..|+..|+ +++++|+ ++++++.....+... ...+. --.+.. +++++
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~----~~~~~---------~~~v~~-~~~~a 67 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG----IAYDS---------NTRVRQ-GGYED 67 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH----HTTTC---------CCEEEE-CCGGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHH----HhhCC---------CcEEEe-CCHHH
Confidence 799999 99999999999999886 7999999 877654321111111 00000 001222 34678
Q ss_pred cCCCCEEEEecc--CCh------------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh
Q 004726 385 FKDVDMVIEAVI--ESV------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVG 432 (733)
Q Consensus 385 l~~aDlVI~avp--e~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 432 (733)
+++||+||.+.. ..+ .+.+.+.+.+.++.+ +.++.. +|.|+..+.
T Consensus 68 ~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~~~viv--~SNPv~~~~ 126 (303)
T 1o6z_A 68 TAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLT--TSNPVDLLN 126 (303)
T ss_dssp GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEE--CCSSHHHHH
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEE--eCChHHHHH
Confidence 999999999874 211 355666667777654 555443 345554433
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00025 Score=74.79 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=65.3
Q ss_pred ceEEEEc-CCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc---ccCc
Q 004726 309 RKVAVIG-GGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLDY 382 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 382 (733)
+||+|+| +|.+|.+++..|+..| ++|+++|++++. ..+.+ +...... ..+.. ++++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~-~~~~d---------L~~~~~~--------~~v~~~~~t~d~ 70 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP-GVTAD---------ISHMDTG--------AVVRGFLGQQQL 70 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHH-HHHHH---------HHTSCSS--------CEEEEEESHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcH-hHHHH---------hhccccc--------ceEEEEeCCCCH
Confidence 5899999 7999999999999999 799999998861 11110 1111000 12222 3355
Q ss_pred -cccCCCCEEEEeccC--C------------hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH
Q 004726 383 -SEFKDVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNTSTIDLNI 430 (733)
Q Consensus 383 -~~l~~aDlVI~avpe--~------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~ 430 (733)
+++++||+||.+++- . ..+.+.+.+.+.++.+ +.++.. +|.|+..
T Consensus 71 ~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p-~~~viv--~SNPv~~ 130 (326)
T 1smk_A 71 EAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP-RAIVNL--ISNPVNS 130 (326)
T ss_dssp HHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT-TSEEEE--CCSSHHH
T ss_pred HHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEE--ECCchHH
Confidence 678999999999842 1 1556667777777774 444433 2455554
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00045 Score=72.44 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=61.9
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc---ccCcc
Q 004726 310 KVAVIGG-GLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLDYS 383 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~~~ 383 (733)
||+|||+ |.+|.+++..|+..| .+|+++|+++ ....+. .+.+... ...+.. +++++
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~~~~a~---------dL~~~~~--------~~~l~~~~~t~d~~ 63 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAA---------DLSHIET--------RATVKGYLGPEQLP 63 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-HHHHHH---------HHTTSSS--------SCEEEEEESGGGHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-cHHHHH---------HHhccCc--------CceEEEecCCCCHH
Confidence 7999998 999999999999988 6999999998 111110 0111110 013443 35664
Q ss_pred -ccCCCCEEEEecc--CCh------------HHHHHHHHHHHHhCCCCeEE
Q 004726 384 -EFKDVDMVIEAVI--ESV------------PLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 384 -~l~~aDlVI~avp--e~~------------~~k~~v~~~l~~~~~~~~ii 419 (733)
++++||+||.++. ... .+.+++.+.+.++++...++
T Consensus 64 ~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi 114 (314)
T 1mld_A 64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMIC 114 (314)
T ss_dssp HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred HHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 6999999999873 211 56777777888887544443
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=7.8e-05 Score=82.33 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=61.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.||.++|+.+...|.+|+++|+++.....+. ..| .... ++ +.+++
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-----------~~G-------------~~~~-~l~ell~~ 332 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-----------MEG-------------YRVV-TMEYAADK 332 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-----------TTT-------------CEEC-CHHHHTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-----------HcC-------------CEeC-CHHHHHhc
Confidence 5799999999999999999999999999999987642221 111 1112 33 66899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
||+||.++...--+. .+..+.++++++|+..+++
T Consensus 333 aDiVi~~~~t~~lI~----~~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 333 ADIFVTATGNYHVIN----HDHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp CSEEEECSSSSCSBC----HHHHHHCCTTEEEEECSSS
T ss_pred CCEEEECCCcccccC----HHHHhhCCCCcEEEEcCCC
Confidence 999999983221121 3444568999988644443
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.41 E-value=6.7e-05 Score=82.49 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=61.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.||.++|+.+...|.+|+++|+++.....+. ..| ... .++ +.+++
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-----------~~g-------------~~~-~~l~ell~~ 312 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------MEG-------------FNV-VTLDEIVDK 312 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-----------HcC-------------CEe-cCHHHHHhc
Confidence 5799999999999999999999999999999987643321 111 111 233 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
||+||.+.. ...+ +-.+..+.++++++|+..+++
T Consensus 313 aDiVi~~~~-t~~l---I~~~~l~~MK~gailiNvgrg 346 (479)
T 1v8b_A 313 GDFFITCTG-NVDV---IKLEHLLKMKNNAVVGNIGHF 346 (479)
T ss_dssp CSEEEECCS-SSSS---BCHHHHTTCCTTCEEEECSST
T ss_pred CCEEEECCC-hhhh---cCHHHHhhcCCCcEEEEeCCC
Confidence 999999962 2221 112344568899988644443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0002 Score=79.34 Aligned_cols=86 Identities=26% Similarity=0.260 Sum_probs=61.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|.+|+++|+++++++.+.+ .|. .. .++ +.+++
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~-----------~Ga-------------~~-~~l~e~l~~ 329 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM-----------EGF-------------DV-VTVEEAIGD 329 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTC-------------EE-CCHHHHGGG
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCC-------------EE-ecHHHHHhC
Confidence 47999999999999999999999999999999988765421 121 11 122 45678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
+|+||++++...-+. .+..+.++++.+++...
T Consensus 330 aDvVi~atgt~~~i~----~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 330 ADIVVTATGNKDIIM----LEHIKAMKDHAILGNIG 361 (494)
T ss_dssp CSEEEECSSSSCSBC----HHHHHHSCTTCEEEECS
T ss_pred CCEEEECCCCHHHHH----HHHHHhcCCCcEEEEeC
Confidence 999999987443222 23445578888876433
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00024 Score=72.57 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=49.6
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 388 (733)
+|+|||+|.||.+++..|.+.|++|+++|+++++++...+.. + .. .+++ +. +++
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~----------~-------------~~-~~~~~~~-~~~ 172 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF----------G-------------LR-AVPLEKA-REA 172 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH----------T-------------CE-ECCGGGG-GGC
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------c-------------cc-hhhHhhc-cCC
Confidence 699999999999999999999999999999998766542211 1 01 1233 45 889
Q ss_pred CEEEEeccCC
Q 004726 389 DMVIEAVIES 398 (733)
Q Consensus 389 DlVI~avpe~ 398 (733)
|+||.|+|..
T Consensus 173 Divi~~tp~~ 182 (263)
T 2d5c_A 173 RLLVNATRVG 182 (263)
T ss_dssp SEEEECSSTT
T ss_pred CEEEEccCCC
Confidence 9999999844
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00052 Score=72.53 Aligned_cols=100 Identities=10% Similarity=-0.007 Sum_probs=63.2
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
+++.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. .+.....+++
T Consensus 3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~~~~~~~~~~~ 60 (330)
T 3e9m_A 3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE----------------------LAIPVAYGSYE 60 (330)
T ss_dssp CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH----------------------TTCCCCBSSHH
T ss_pred CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH----------------------cCCCceeCCHH
Confidence 3446899999999999999999985 67776 789999887654221 1111234555
Q ss_pred cccC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHh
Q 004726 383 SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVG 432 (733)
Q Consensus 383 ~~l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 432 (733)
+.+. ++|+|++|+|..... ++.....+ .+. +++....+....+..
T Consensus 61 ~ll~~~~~D~V~i~tp~~~h~--~~~~~al~---~gk~vl~EKP~~~~~~e~~ 108 (330)
T 3e9m_A 61 ELCKDETIDIIYIPTYNQGHY--SAAKLALS---QGKPVLLEKPFTLNAAEAE 108 (330)
T ss_dssp HHHHCTTCSEEEECCCGGGHH--HHHHHHHH---TTCCEEECSSCCSSHHHHH
T ss_pred HHhcCCCCCEEEEcCCCHHHH--HHHHHHHH---CCCeEEEeCCCCCCHHHHH
Confidence 3444 799999999965543 33333222 232 455444455555433
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00087 Score=66.21 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=59.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCC-HHHHHHHhhccccccCccccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
||.|+|+|.+|..+|..|.+.|++|+++|++++.++...+.. ....-.|-.+ .+... ...+.+|
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l~-----------~a~i~~a 66 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL----KATIIHGDGSHKEILR-----------DAEVSKN 66 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHHH-----------HHTCCTT
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHHH-----------hcCcccC
Confidence 699999999999999999999999999999999877642210 0000011111 11000 0236889
Q ss_pred CEEEEeccCChHHHHHHHHHHHHh-CCCCeEEE
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKA-CPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~ 420 (733)
|+||.+++++.. ..+...+.+. .+...+++
T Consensus 67 d~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 67 DVVVILTPRDEV--NLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp CEEEECCSCHHH--HHHHHHHHHHTSCCCEEEE
T ss_pred CEEEEecCCcHH--HHHHHHHHHHHcCCCeEEE
Confidence 999999985433 2333444443 45555554
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00093 Score=71.32 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=53.5
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHC--CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
+++.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. . .+...+++
T Consensus 11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------------------~-~~~~~~~~ 67 (354)
T 3q2i_A 11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------------------T-GARGHASL 67 (354)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------------------H-CCEEESCH
T ss_pred CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------------------c-CCceeCCH
Confidence 3456899999999999999999987 77865 889999987764321 1 13445565
Q ss_pred -cccC--CCCEEEEeccCChH
Q 004726 383 -SEFK--DVDMVIEAVIESVP 400 (733)
Q Consensus 383 -~~l~--~aDlVI~avpe~~~ 400 (733)
+.++ ++|+|++|+|....
T Consensus 68 ~~ll~~~~~D~V~i~tp~~~h 88 (354)
T 3q2i_A 68 TDMLAQTDADIVILTTPSGLH 88 (354)
T ss_dssp HHHHHHCCCSEEEECSCGGGH
T ss_pred HHHhcCCCCCEEEECCCcHHH
Confidence 3444 79999999995544
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00081 Score=73.09 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=47.6
Q ss_pred ceEEEEcCCcC-cHHHHHHHHH--C---CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLM-GSGIATAHIL--N---NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~--~---G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|.. +.+++..|+. . +.+|+++|+++++++.+...... ..... .++..++|+
T Consensus 3 ~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~----~~~~~-----------~~v~~t~d~ 67 (417)
T 1up7_A 3 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKR----LVKDR-----------FKVLISDTF 67 (417)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHH----HHTTS-----------SEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHH----HhhCC-----------eEEEEeCCH
Confidence 58999999985 2222234455 3 56899999999987763321111 11110 246666786
Q ss_pred -cccCCCCEEEEec
Q 004726 383 -SEFKDVDMVIEAV 395 (733)
Q Consensus 383 -~~l~~aDlVI~av 395 (733)
+++++||+||.++
T Consensus 68 ~~al~~AD~Viita 81 (417)
T 1up7_A 68 EGAVVDAKYVIFQF 81 (417)
T ss_dssp HHHHTTCSEEEECC
T ss_pred HHHhCCCCEEEEcC
Confidence 8899999999998
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0002 Score=75.65 Aligned_cols=100 Identities=20% Similarity=0.134 Sum_probs=70.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||.|.+|..+|+.+..-|.+|+.||+....... +. .+.. .++ +.+++
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~~-------------~~~~-~~l~ell~~ 194 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------EK-------------GCVY-TSLDELLKE 194 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HT-------------TCEE-CCHHHHHHH
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------hc-------------Ccee-cCHHHHHhh
Confidence 58999999999999999999999999999987543111 00 1122 233 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 436 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |++- +.-..+.+.+.
T Consensus 195 sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~ 245 (334)
T 3kb6_A 195 SDVISLHVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQ 245 (334)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHH
Confidence 999999999777654444455666789999875 6763 33345555543
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00039 Score=73.95 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=61.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHH--CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.||..++..++. ...+|++||++++++++..+.+.. ..| + .+...++. +.+
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g-~----------~~~~~~~~~eav 192 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSG-L----------TIRRASSVAEAV 192 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTT-C----------EEEECSSHHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccC-c----------eEEEeCCHHHHH
Confidence 479999999999999988764 346899999999988775432210 001 0 12233444 567
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+||.|+|... ...++. ...+++++.|...+|
T Consensus 193 ~~aDiVi~aTps~~--~~pvl~--~~~l~~G~~V~~vgs 227 (350)
T 1x7d_A 193 KGVDIITTVTADKA--YATIIT--PDMLEPGMHLNAVGG 227 (350)
T ss_dssp TTCSEEEECCCCSS--EEEEEC--GGGCCTTCEEEECSC
T ss_pred hcCCEEEEeccCCC--CCceec--HHHcCCCCEEEECCC
Confidence 89999999998541 001111 135677776654433
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00018 Score=77.77 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=60.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.||.++|+.+...|.+|+++|+++.....+. ..| .... ++ +.+++
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-----------~~G-------------~~~~-sL~eal~~ 266 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-----------MEG-------------YQVL-LVEDVVEE 266 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEEC-CHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-----------HhC-------------Ceec-CHHHHHhh
Confidence 4799999999999999999999999999999987654431 111 1212 33 67889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.+....--+. .+..+.++++++|+ |++
T Consensus 267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVI-Nvg 298 (436)
T 3h9u_A 267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVC-NIG 298 (436)
T ss_dssp CSEEEECSSCSCSBC----TTTGGGCCTTEEEE-ECS
T ss_pred CCEEEECCCCcCccC----HHHHhhcCCCcEEE-EeC
Confidence 999998654211111 23345678999876 444
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00064 Score=68.24 Aligned_cols=87 Identities=20% Similarity=0.119 Sum_probs=56.7
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEE-EeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~-~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
+|.||+|+|+|.||..++..+.+.+.+++. +|++++. . ..+..+++++.+
T Consensus 2 ~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~-------------~gv~v~~dl~~l 52 (243)
T 3qy9_A 2 ASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------T-------------TPYQQYQHIADV 52 (243)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------------------------------CCSCBCSCTTTC
T ss_pred CceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------c-------------CCCceeCCHHHH
Confidence 357899999999999999999988777664 7887652 0 124445666443
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
.++|+||++.. ++..... +. +..+.-+++.|++++..
T Consensus 53 ~~~DVvIDft~--p~a~~~~---~~--l~~g~~vVigTTG~s~e 89 (243)
T 3qy9_A 53 KGADVAIDFSN--PNLLFPL---LD--EDFHLPLVVATTGEKEK 89 (243)
T ss_dssp TTCSEEEECSC--HHHHHHH---HT--SCCCCCEEECCCSSHHH
T ss_pred hCCCEEEEeCC--hHHHHHH---HH--HhcCCceEeCCCCCCHH
Confidence 39999998775 4433333 22 55555555556665543
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00068 Score=70.87 Aligned_cols=98 Identities=12% Similarity=-0.016 Sum_probs=62.5
Q ss_pred CcceEEEEcCCcCcHH-HHHHHHH-CCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 307 GVRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
++.||+|||+|.||.. ++..+.+ .+++|+ ++|+++++++...+.. + +...+++
T Consensus 5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~----------------------~-~~~~~~~~ 61 (308)
T 3uuw_A 5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY----------------------R-IMPFDSIE 61 (308)
T ss_dssp CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH----------------------T-CCBCSCHH
T ss_pred ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------------------C-CCCcCCHH
Confidence 3468999999999997 8888877 467877 8999999877643211 1 1224454
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHh
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVG 432 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 432 (733)
+.++++|+|+.|+|..... ++.....+ .+. +++....+....+..
T Consensus 62 ~ll~~~D~V~i~tp~~~h~--~~~~~al~---~gk~vl~EKP~~~~~~~~~ 107 (308)
T 3uuw_A 62 SLAKKCDCIFLHSSTETHY--EIIKILLN---LGVHVYVDKPLASTVSQGE 107 (308)
T ss_dssp HHHTTCSEEEECCCGGGHH--HHHHHHHH---TTCEEEECSSSSSSHHHHH
T ss_pred HHHhcCCEEEEeCCcHhHH--HHHHHHHH---CCCcEEEcCCCCCCHHHHH
Confidence 4566899999999955443 33333322 232 444434455555433
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0057 Score=62.64 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=94.6
Q ss_pred eCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc--ccchhHHHHHHHHHh
Q 004726 20 LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS--LMPDVSVELVVNLIE 95 (733)
Q Consensus 20 l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~i~ 95 (733)
-|++. .-+++....+.+.++++.+.+. .+-+|.|...|+. -..+ .... .+.. ....+ .++.
T Consensus 127 a~d~~~~gGs~g~~~~~K~~r~ie~A~~~-~lPlI~l~dsgGa-----r~qE-------Gi~sl~q~ak-i~~~l-~~~s 191 (285)
T 2f9i_B 127 VMDSRFRMGSMGSVIGEKICRIIDYCTEN-RLPFILFSASGGA-----RMQE-------GIISLMQMGK-TSVSL-KRHS 191 (285)
T ss_dssp EECTTTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEECSC-----CGGG-------HHHHHHHHHH-HHHHH-HHHH
T ss_pred EEccccccCcCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCc-----chhh-------hhhhHhHHHH-HHHHH-HHHH
Confidence 44553 3789999999999999998865 4667777654432 1211 1000 1111 11233 3466
Q ss_pred cCCCcEEEEeCCcccchhhHH-hhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHH
Q 004726 96 DCKKPIVAAVEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~l-alacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA 174 (733)
....|.|+++.|.|.||+... ++.+|+++|.++|.+++-... +..+.+-+.+. -.--+|+.+
T Consensus 192 ~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~-------vi~~~~~~~~~----------e~~~~Ae~~ 254 (285)
T 2f9i_B 192 DAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRR-------VIEQTINEKLP----------DDFQTAEFL 254 (285)
T ss_dssp HTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHH-------HHHHHHTSCCC----------TTTTBHHHH
T ss_pred cCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHH-------HHHHHhcccch----------HhHhhHHHH
Confidence 789999999999999998654 789999999999988863221 11111111111 111247888
Q ss_pred HHcCCccEEcCcchHHHHHHHHHH
Q 004726 175 WKLGLIDAVVTSEELLKVSRLWAL 198 (733)
Q Consensus 175 ~~~Glv~~vv~~~~l~~~a~~~a~ 198 (733)
.+.|+||.|++++++.+...++..
T Consensus 255 ~~~G~iD~Iv~~~e~r~~l~~~L~ 278 (285)
T 2f9i_B 255 LEHGQLDKVVHRNDMRQTLSEILK 278 (285)
T ss_dssp HHTTCCSEECCGGGHHHHHHHHHH
T ss_pred HhcCCccEEeChHHHHHHHHHHHH
Confidence 899999999998887766655544
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00046 Score=72.95 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=64.7
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCC----hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVN----SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~----~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 376 (733)
.||+|+|+ |.+|.+++..|+..|+ +|+++|++ +++++..... +...... ....+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~d--------l~~~~~~------~~~~i 71 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMME--------IDDCAFP------LLAGM 71 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHH--------HHTTTCT------TEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHH--------Hhhhccc------ccCcE
Confidence 58999998 9999999999999886 89999999 5544321111 1111000 11244
Q ss_pred ccccCc-cccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 377 KGVLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 377 ~~~~~~-~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
..+++. +++++||+||.+..- +..+.+.+.+.+.+++.++++++
T Consensus 72 ~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii 130 (329)
T 1b8p_A 72 TAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVL 130 (329)
T ss_dssp EEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred EEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 555564 779999999988731 22455667777888874565544
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0011 Score=70.54 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=62.6
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
+.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+ ..+ +...+++ +.
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------------------~~g-~~~~~~~~~~ 60 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE----------------------ANG-AEAVASPDEV 60 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------------------TTT-CEEESSHHHH
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH----------------------HcC-CceeCCHHHH
Confidence 35899999999999999999886 67876 79999988765421 112 3344555 44
Q ss_pred cC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHH
Q 004726 385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (733)
Q Consensus 385 l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l 431 (733)
++ ++|+|++|+|..... ++.....+. .. .+++....+....+.
T Consensus 61 l~~~~~D~V~i~tp~~~h~--~~~~~al~~-gk-~v~~EKP~~~~~~~~ 105 (344)
T 3euw_A 61 FARDDIDGIVIGSPTSTHV--DLITRAVER-GI-PALCEKPIDLDIEMV 105 (344)
T ss_dssp TTCSCCCEEEECSCGGGHH--HHHHHHHHT-TC-CEEECSCSCSCHHHH
T ss_pred hcCCCCCEEEEeCCchhhH--HHHHHHHHc-CC-cEEEECCCCCCHHHH
Confidence 55 799999999965543 333333221 12 245444445555543
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00063 Score=71.52 Aligned_cols=96 Identities=10% Similarity=0.024 Sum_probs=59.4
Q ss_pred CcceEEEEcCCcCcHH-HHHHHHH-CCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcc
Q 004726 307 GVRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (733)
+..||+|||+|.||.. ++..+.+ .+++|+ ++|+++++++...+.. | +...++++
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~----------g-------------~~~~~~~~ 60 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------R-------------IPYADSLS 60 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------T-------------CCBCSSHH
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------C-------------CCccCcHH
Confidence 3458999999999997 8888876 477876 9999998766542210 1 12334444
Q ss_pred cc-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHH
Q 004726 384 EF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI 430 (733)
Q Consensus 384 ~l-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~ 430 (733)
.+ .++|+|++|+|..... ++.... +..+. +++....+....+
T Consensus 61 ~l~~~~D~V~i~tp~~~h~--~~~~~a---l~~G~~v~~eKP~~~~~~~ 104 (319)
T 1tlt_A 61 SLAASCDAVFVHSSTASHF--DVVSTL---LNAGVHVCVDKPLAENLRD 104 (319)
T ss_dssp HHHTTCSEEEECSCTTHHH--HHHHHH---HHTTCEEEEESSSCSSHHH
T ss_pred HhhcCCCEEEEeCCchhHH--HHHHHH---HHcCCeEEEeCCCCCCHHH
Confidence 33 6799999999965443 333222 23344 4444344455544
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00012 Score=74.31 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=34.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK 346 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~ 346 (733)
+|.|||+|.||.+++..|++.|. +|+++||++++++.
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~ 147 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKA 147 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 69999999999999999999998 99999999987654
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0068 Score=67.22 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=91.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHH-HHhcCCCcEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVA 103 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~kp~Ia 103 (733)
.-++.+...+.+..+++.+.+. .+-+|.|.-. .|+.+.+-.. .+... .+.+.+ ....--.|+|+
T Consensus 118 gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dS-----GGARmqeg~~--------sl~~~-~~i~~~~~~~s~~iP~Is 182 (531)
T 3n6r_B 118 GGSVSETHSKKICKIMDMAMQN-GAPVIGINDS-----GGARIQEGVD--------SLAGY-GEVFQRNIMASGVVPQIS 182 (531)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CCBCGGGTHH--------HHHHH-HHHHHHHHHTTTTSCEEE
T ss_pred cccccHHHHHHHHHHHHHHHHc-CCCEEEEeCC-----CccccCcccc--------hhhhH-HHHHHHHHHHhCCCCEEE
Confidence 4889999999999999988765 4567777653 3444432100 01111 122211 11224589999
Q ss_pred EeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHH-------H
Q 004726 104 AVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------W 175 (733)
Q Consensus 104 av~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA-------~ 175 (733)
+|.|.|.|||......||++|+.++ +.+++ .|+...+ ..+|+.+++++. .
T Consensus 183 vv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~--------------------aGP~vI~--~~~ge~v~~E~LGGa~~h~~ 240 (531)
T 3n6r_B 183 MIMGPCAGGAVYSPAMTDFIFMVKDSSYMFV--------------------TGPDVVK--TVTNEQVSAEELGGATTHTR 240 (531)
T ss_dssp EECSCCBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHH--HHHCCCCCHHHHHBHHHHHH
T ss_pred EEeCCcchHHHHHhhhCCEEEEecCCceEee--------------------cCHHHHH--HHhCCccChhhcchHHHHhh
Confidence 9999999999988888999999985 66554 2322222 257899999998 8
Q ss_pred HcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 176 KLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 176 ~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
+.|++|.++++++ .+.+.++++.
T Consensus 241 ~sG~~d~v~~~e~---~a~~~~r~ll 263 (531)
T 3n6r_B 241 KSSVADAAFENDV---EALAEVRRLV 263 (531)
T ss_dssp TTSCCSEEESSHH---HHHHHHHHHH
T ss_pred ccCcceEEeCCHH---HHHHHHHHHH
Confidence 9999999997643 3444444444
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00045 Score=69.31 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=52.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc-C
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-K 386 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-~ 386 (733)
||+|||+|.||..++..+.+.|++| .++|+++. .++ ..+++ +.+ .
T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~-------------------------------~~~~~~~l~~~ 49 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK-------------------------------MVRGIDEFLQR 49 (236)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT-------------------------------EESSHHHHTTS
T ss_pred EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh-------------------------------hcCCHHHHhcC
Confidence 7999999999999999999999997 69998852 110 12333 334 6
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
++|+||+|+|. ..-.++.. ..+..+..+++.+
T Consensus 50 ~~DvVv~~~~~--~~~~~~~~---~~l~~G~~vv~~~ 81 (236)
T 2dc1_A 50 EMDVAVEAASQ--QAVKDYAE---KILKAGIDLIVLS 81 (236)
T ss_dssp CCSEEEECSCH--HHHHHHHH---HHHHTTCEEEESC
T ss_pred CCCEEEECCCH--HHHHHHHH---HHHHCCCcEEEEC
Confidence 89999999993 33333332 3344566555443
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0075 Score=66.92 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=96.9
Q ss_pred EEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHH--
Q 004726 17 IITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-- 92 (733)
Q Consensus 17 ~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-- 92 (733)
.|.-+.+. .-+++....+.+..+++.+... .+-+|.|.-.| |+-+.+- ...+.. .-+++.+
T Consensus 100 ~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSg-----GaRmqEg--------~~~l~~-~~~i~~~~~ 164 (530)
T 3iav_A 100 AVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG-----GARIQEG--------VASLGA-YGEIFRRNT 164 (530)
T ss_dssp EEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SBCGGGT--------HHHHHH-HHHHHHHHH
T ss_pred EEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhhh--------hhhHHH-HHHHHHHHH
Confidence 33334443 4889999999999999998765 46677776543 3333221 001111 1122211
Q ss_pred HHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCH
Q 004726 93 LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS 171 (733)
Q Consensus 93 ~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a 171 (733)
++.. -.|+|++|.|.|.|||......||++|++++ +.+++. |+...+ ..+|+.+++
T Consensus 165 ~~s~-~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~--~~~ge~v~~ 221 (530)
T 3iav_A 165 HASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK--TVTGEDVGF 221 (530)
T ss_dssp HTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH--HHHCCCCCH
T ss_pred HHcC-CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH--HHhCCcCCh
Confidence 1222 3999999999999999988889999999975 887762 333222 257899999
Q ss_pred HHH-------HHcCCccEEcCcc-hHHHHHHHHHHHH
Q 004726 172 EEG-------WKLGLIDAVVTSE-ELLKVSRLWALDI 200 (733)
Q Consensus 172 ~eA-------~~~Glv~~vv~~~-~l~~~a~~~a~~~ 200 (733)
++. ...|++|.+++++ +..+.++++...+
T Consensus 222 e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~~ls~l 258 (530)
T 3iav_A 222 EELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL 258 (530)
T ss_dssp HHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred hhcchHHHHHhccCceeEEecChHHHHHHHHHHHHhc
Confidence 876 6899999999765 3555555555443
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0013 Score=70.78 Aligned_cols=87 Identities=22% Similarity=0.315 Sum_probs=60.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|+|+|.+|.++|+.+...|.+|+++|+++.....+. ..| ... .++ +.+++
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-----------~~G-------------~~v-~~Leeal~~ 275 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-----------MDG-------------FRL-VKLNEVIRQ 275 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEE-CCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-----------HcC-------------CEe-ccHHHHHhc
Confidence 4799999999999999999999999999999987644331 111 111 123 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
+|+||.| +....+.. .+....++++++|+ |++.
T Consensus 276 ADIVi~a-tgt~~lI~---~e~l~~MK~gailI-Nvgr 308 (435)
T 3gvp_A 276 VDIVITC-TGNKNVVT---REHLDRMKNSCIVC-NMGH 308 (435)
T ss_dssp CSEEEEC-SSCSCSBC---HHHHHHSCTTEEEE-ECSS
T ss_pred CCEEEEC-CCCcccCC---HHHHHhcCCCcEEE-EecC
Confidence 9999997 43333211 23344578898875 4443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00019 Score=76.54 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=63.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHh--------cCC---CCHHHHHHHhhccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT--------RGK---LTQDKANNALKMLK 377 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~--------~g~---~~~~~~~~~~~~i~ 377 (733)
.||+|||+|.||..+|+.+...|.+|+++|+++++++.+.+. - .+.+. .+. ++.+.....
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l-G---a~~~~l~~~~~~~~gya~~~~~~~~~~~----- 255 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV-G---AQWLDLGIDAAGEGGYARELSEAERAQQ----- 255 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT-T---CEECCCC-------------CHHHHHHH-----
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C---CeEEeccccccccccchhhhhHHHHhhh-----
Confidence 589999999999999999999999999999999987765320 0 00000 000 111100000
Q ss_pred cccCc-cccCCCCEEEEec--cCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 378 GVLDY-SEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 378 ~~~~~-~~l~~aDlVI~av--pe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
..++ +.++++|+||.++ |....- .-+-++..+.++++.+|++.+
T Consensus 256 -~~~l~e~l~~aDIVI~tv~iPg~~ap-~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 256 -QQALEDAITKFDIVITTALVPGRPAP-RLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp -HHHHHHHHTTCSEEEECCCCTTSCCC-CCBCHHHHHTSCTTCEEEETT
T ss_pred -HHHHHHHHhcCCEEEECCCCCCcccc-eeecHHHHhcCCCCcEEEEEe
Confidence 1122 5689999999986 421110 011244556678898887543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0022 Score=59.40 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=33.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCC-hHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLK 346 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~-~e~~~~ 346 (733)
++|.|+|+|.+|..++..|.+.|++|+++|++ ++..+.
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~ 42 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQ 42 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHH
Confidence 47999999999999999999999999999998 455444
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00071 Score=71.18 Aligned_cols=70 Identities=17% Similarity=0.045 Sum_probs=51.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHH--CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.||..++..|+. ...+|.+|||+++++++..+.+.. .+ + .+. .+++ +.+
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~v 186 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEAS 186 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHHT
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHHh
Confidence 479999999999999999987 346899999999998876443211 01 0 122 3444 567
Q ss_pred CCCCEEEEeccCC
Q 004726 386 KDVDMVIEAVIES 398 (733)
Q Consensus 386 ~~aDlVI~avpe~ 398 (733)
++|+||.|+|..
T Consensus 187 -~aDvVi~aTp~~ 198 (322)
T 1omo_A 187 -RCDVLVTTTPSR 198 (322)
T ss_dssp -SSSEEEECCCCS
T ss_pred -CCCEEEEeeCCC
Confidence 899999999843
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00093 Score=73.99 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=48.7
Q ss_pred eEEEEcCCcCcHH--HHHHHHH----C--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC
Q 004726 310 KVAVIGGGLMGSG--IATAHIL----N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (733)
Q Consensus 310 kI~VIG~G~mG~~--iA~~l~~----~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (733)
||+|||+|..|.. +...++. . +.+|+++|+++++++.....+++..+.. | .--.+..++|
T Consensus 2 KI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~---~---------~~~~i~~t~d 69 (477)
T 3u95_A 2 KISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEEL---N---------SPVKVVKTES 69 (477)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHH---T---------CCCEEEEESC
T ss_pred EEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHc---C---------CCeEEEEeCC
Confidence 7999999998754 2222332 2 3479999999998876543333322211 1 0024667788
Q ss_pred c-cccCCCCEEEEec
Q 004726 382 Y-SEFKDVDMVIEAV 395 (733)
Q Consensus 382 ~-~~l~~aDlVI~av 395 (733)
. +++++||+||.++
T Consensus 70 ~~eAl~gAD~Vi~~~ 84 (477)
T 3u95_A 70 LDEAIEGADFIINTA 84 (477)
T ss_dssp HHHHHTTCSEEEECC
T ss_pred HHHHhCCCCEEEECc
Confidence 7 7799999999986
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00027 Score=75.94 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=36.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
.||+|||+|.||..+|+.+...|.+|+++|+++++++.+
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~ 229 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQV 229 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999999987765
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00067 Score=69.08 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=49.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|.|||+|.||.+++..|++.|.+|++++|++++++... .+ + +.. .+++.+.++
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~----------~-------------~~~-~~~~~l~~~ 173 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL----------G-------------CDC-FMEPPKSAF 173 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH----------T-------------CEE-ESSCCSSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC----------C-------------CeE-ecHHHhccC
Confidence 4799999999999999999999999999999998876542 11 1 111 123345589
Q ss_pred CEEEEeccCC
Q 004726 389 DMVIEAVIES 398 (733)
Q Consensus 389 DlVI~avpe~ 398 (733)
|+||.|+|-.
T Consensus 174 DiVInaTp~G 183 (269)
T 3phh_A 174 DLIINATSAS 183 (269)
T ss_dssp SEEEECCTTC
T ss_pred CEEEEcccCC
Confidence 9999999843
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.001 Score=71.09 Aligned_cols=151 Identities=11% Similarity=0.051 Sum_probs=93.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|||.|.-|.+-|++|..+|.+|++--|.....+.. +.+++..+. ...+.+-.++++.|
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~-----~S~~~A~~~-------------Gf~v~~~~eA~~~A 99 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR-----ASWRKATEN-------------GFKVGTYEELIPQA 99 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----HHHHHHHHT-------------TCEEEEHHHHGGGC
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----chHHHHHHC-------------CCEecCHHHHHHhC
Confidence 689999999999999999999999998876633211110 001111222 23333434789999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCC--cEEEEecCCCC----------CCCCee
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPA----------HVMPLL 456 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~--~~ig~h~~~p~----------~~~~lv 456 (733)
|+|+.-+|+.. -..++++|.+.++++..+. -+.++.+.. ..+..|. .++-+-|-.|- .-.|.+
T Consensus 100 DvV~~L~PD~~--q~~vy~~I~p~lk~G~~L~-faHGFnI~~--~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~l 174 (491)
T 3ulk_A 100 DLVINLTPDKQ--HSDVVRTVQPLMKDGAALG-YSHGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTL 174 (491)
T ss_dssp SEEEECSCGGG--HHHHHHHHGGGSCTTCEEE-ESSCHHHHT--TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEE
T ss_pred CEEEEeCChhh--HHHHHHHHHhhCCCCCEEE-ecCcccccc--cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceE
Confidence 99999999554 4577899999999999875 345554432 2222222 23333332221 122333
Q ss_pred EEec-CCCCCHHHHHHHHHHHHHcCCe
Q 004726 457 EIVR-TERTSAQVILDLMTVGKIIKKV 482 (733)
Q Consensus 457 eiv~-~~~t~~e~~~~~~~l~~~lG~~ 482 (733)
-.|- -...+-.+.+.+..+...+|..
T Consensus 175 iAVhqeqD~sG~a~~~AlayA~aiG~~ 201 (491)
T 3ulk_A 175 IAVHPENDPKGEGMAIAKAWAAATGGH 201 (491)
T ss_dssp EEECGGGCTTSCHHHHHHHHHHHHTGG
T ss_pred EEEEeCCCCchhHHHHHHHHHHhcCCC
Confidence 3331 1233556778888899999853
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00087 Score=72.32 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=61.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+...|.+|+++|+++.....+. ..| .... ++ +.++.
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-----------~~G-------------~~vv-~LeElL~~ 302 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-----------MDG-------------FEVV-TLDDAAST 302 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEEC-CHHHHGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-----------hcC-------------ceec-cHHHHHhh
Confidence 5799999999999999999999999999999987543321 111 1111 22 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
||+|+.+....--+. .+..+.++++++|+ |++..
T Consensus 303 ADIVv~atgt~~lI~----~e~l~~MK~GAILI-NvGRg 336 (464)
T 3n58_A 303 ADIVVTTTGNKDVIT----IDHMRKMKDMCIVG-NIGHF 336 (464)
T ss_dssp CSEEEECCSSSSSBC----HHHHHHSCTTEEEE-ECSSS
T ss_pred CCEEEECCCCccccC----HHHHhcCCCCeEEE-EcCCC
Confidence 999999864221111 33445678999885 56543
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00044 Score=72.37 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=58.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.||..++..|... ..+|++||++ +.++..+.+.+. .|. .+... +. +++
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~------~g~-----------~~~~~-~~~eav 181 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRR------CGV-----------PARMA-APADIA 181 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHH------HTS-----------CEEEC-CHHHHH
T ss_pred cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHh------cCC-----------eEEEe-CHHHHH
Confidence 4799999999999999999863 4589999999 433332222111 010 12223 44 667
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
++||+||.|+|... .++. .+.++++++|....|.
T Consensus 182 ~~aDIVi~aT~s~~----pvl~--~~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 182 AQADIVVTATRSTT----PLFA--GQALRAGAFVGAIGSS 215 (313)
T ss_dssp HHCSEEEECCCCSS----CSSC--GGGCCTTCEEEECCCS
T ss_pred hhCCEEEEccCCCC----cccC--HHHcCCCcEEEECCCC
Confidence 89999999998532 2222 2457788877655443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00052 Score=71.40 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=35.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (733)
++|.|||+|.||.+++..|++.|. +|+++||++++++..
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l 181 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL 181 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 579999999999999999999998 999999999887654
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0085 Score=66.64 Aligned_cols=139 Identities=15% Similarity=0.088 Sum_probs=92.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.-++.....+.+..+++.+.+. .+-+|.|+. |.|+.+.+-... ...+.+...+.. .+ .-..|.|++
T Consensus 108 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~s-----l~~~~~i~~~~~--~~-s~~iP~Isv 173 (523)
T 1on3_A 108 GGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGIDS-----LSGYGKMFFANV--KL-SGVVPQIAI 173 (523)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHHHHHH--HH-TTTSCEEEE
T ss_pred CCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHHH-----HHHHHHHHHHHH--Hh-cCCCCEEEE
Confidence 4889999999999999998765 466777765 445555432110 001111111111 12 344999999
Q ss_pred eCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH-----HH--HHc
Q 004726 105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EG--WKL 177 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~-----eA--~~~ 177 (733)
+.|+|.||+......||++|+.+++.+++. |+..... .+|+.++.+ +. .+.
T Consensus 174 v~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~~--~~ge~~~~e~lggae~h~~~~ 231 (523)
T 1on3_A 174 IAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIKS--VTGEDVTADELGGAEAHMAIS 231 (523)
T ss_dssp EEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHSHHHHHHTT
T ss_pred EcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHHH--HhCCcCChHhcccHHHHhhcc
Confidence 999999999999999999999999887764 3222222 457788764 22 268
Q ss_pred CCccEEcCc-chHHHHHHHHHHH
Q 004726 178 GLIDAVVTS-EELLKVSRLWALD 199 (733)
Q Consensus 178 Glv~~vv~~-~~l~~~a~~~a~~ 199 (733)
|++|.++++ .++.+.+.++..-
T Consensus 232 G~vd~vv~d~~~~~~~~r~lL~~ 254 (523)
T 1on3_A 232 GNIHFVAEDDDAAELIAKKLLSF 254 (523)
T ss_dssp CCCSEEESSHHHHHHHHHHHHHT
T ss_pred CceEEEeCCHHHHHHHHHHHHHh
Confidence 999999985 4455555555443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00023 Score=76.66 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=60.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-C-----CHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-L-----TQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~-----~~~~~~~~~~~i~~~~~~ 382 (733)
++|+|||+|.||..+|+.+...|.+|+++|+++++++.+.+.. |. . +..+..
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~----------g~~~~~~~~~~~~l~------------ 226 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF----------CGRIHTRYSSAYELE------------ 226 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------TTSSEEEECCHHHHH------------
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc----------CCeeEeccCCHHHHH------------
Confidence 5899999999999999999999999999999998876643210 10 0 111111
Q ss_pred cccCCCCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEec
Q 004726 383 SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
+.++++|+||+|++-... ...-+.++..+.++++.+|+..
T Consensus 227 ~~l~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 227 GAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp HHHHHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred HHHcCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEE
Confidence 345689999998842221 1111123444567788777543
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0026 Score=66.89 Aligned_cols=69 Identities=20% Similarity=0.073 Sum_probs=49.2
Q ss_pred ceEEEEcCCcCcH-HHHHHHHHC-CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccc-cccCcccc
Q 004726 309 RKVAVIGGGLMGS-GIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYSEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~-~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~l 385 (733)
.||+|||+|.||. .++..+.+. +++|+++|++++++++..+. .| .-. +.++.+.+
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~----------~g------------~~~~~~~~~~~l 60 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YR------------VSATCTDYRDVL 60 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TT------------CCCCCSSTTGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH----------cC------------CCccccCHHHHh
Confidence 4899999999998 489888764 77888999999887654221 01 111 23333555
Q ss_pred -CCCCEEEEeccCCh
Q 004726 386 -KDVDMVIEAVIESV 399 (733)
Q Consensus 386 -~~aDlVI~avpe~~ 399 (733)
.++|+|++|+|...
T Consensus 61 ~~~~D~V~i~tp~~~ 75 (323)
T 1xea_A 61 QYGVDAVMIHAATDV 75 (323)
T ss_dssp GGCCSEEEECSCGGG
T ss_pred hcCCCEEEEECCchh
Confidence 68999999999444
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00073 Score=72.58 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=58.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|+|+|.+|..+++.++..|++|+++|+++++++.+.+.. ...+.....+.++.. +.++++
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~----g~~~~~~~~~~~~l~------------~~~~~~ 230 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF----GGRVITLTATEANIK------------KSVQHA 230 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----TTSEEEEECCHHHHH------------HHHHHC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc----CceEEEecCCHHHHH------------HHHhCC
Confidence 6899999999999999999999999999999998876542210 000000000111111 345689
Q ss_pred CEEEEeccCCh-HHHHHHHHHHHHhCCCCeEEEe
Q 004726 389 DMVIEAVIESV-PLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 389 DlVI~avpe~~-~~k~~v~~~l~~~~~~~~ii~s 421 (733)
|+||+|++-.. ....-+.++..+.++++.+|+.
T Consensus 231 DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~ 264 (369)
T 2eez_A 231 DLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVD 264 (369)
T ss_dssp SEEEECCC-------CCSCHHHHTTSCTTCEEEE
T ss_pred CEEEECCCCCccccchhHHHHHHHhhcCCCEEEE
Confidence 99999997332 1111112444455677776654
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=96.95 E-value=0.025 Score=62.95 Aligned_cols=141 Identities=15% Similarity=0.095 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.-++.+...+.+..+++.+.+. .+-+|.|.-.|. +.+.+-.+... ....+.....++ ..+.....|+|++
T Consensus 134 gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSgG-----ARl~~q~~~~~--~~~~~~~i~~~~--~~ls~~giP~Isv 203 (555)
T 3u9r_B 134 GGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSGG-----ANLPRQDEVFP--DREHFGRIFFNQ--ANMSARGIPQIAV 203 (555)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCC-----BCGGGGGGTSS--STTSTTHHHHHH--HHHHHTTCCEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----CCCCCcceeec--ccccHHHHHHHH--HHHhcCCCCEEEE
Confidence 4789999999999999998865 456777765433 33321111000 011122222222 2356678999999
Q ss_pred eCCcccchhhHHhhhcCEEEEeC-CceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHH-------HH
Q 004726 105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK 176 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA-------~~ 176 (733)
|.|.|.|||......||++|+.+ ++.+++ -|+...+ ..+|+.+++++. ..
T Consensus 204 v~G~~~GGga~~~a~~d~vim~e~~a~i~~--------------------aGP~vik--~~~ge~~~~e~LGGa~~h~~~ 261 (555)
T 3u9r_B 204 VMGSCTAGGAYVPAMSDETVMVREQATIFL--------------------AGPPLVK--AATGEVVSAEELGGADVHCKV 261 (555)
T ss_dssp ECSCCBGGGGHHHHTSSEEEEETTTCBCBS--------------------SCHHHHH--HHHCCCCCHHHHHBHHHHHHT
T ss_pred EecCCCccHHHHHHhCCceEEecCCceEEE--------------------ccHHHHH--HHhcCccChhhccchhhhhhc
Confidence 99999999999999999998875 454332 1222211 267899999998 88
Q ss_pred cCCccEEcCcchHHHHHHHHHHHH
Q 004726 177 LGLIDAVVTSEELLKVSRLWALDI 200 (733)
Q Consensus 177 ~Glv~~vv~~~~l~~~a~~~a~~~ 200 (733)
.|++|.++++++ .+...++++
T Consensus 262 sGv~d~v~~de~---~a~~~~r~~ 282 (555)
T 3u9r_B 262 SGVADHYAEDDD---HALAIARRC 282 (555)
T ss_dssp TCSCSEEESSHH---HHHHHHHHH
T ss_pred cCceeEEeCCHH---HHHHHHHHH
Confidence 999999997653 334444444
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0027 Score=67.71 Aligned_cols=96 Identities=20% Similarity=0.124 Sum_probs=62.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.. .+...+++ +.+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~-----------------------g~~~~~~~~~~l 62 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY-----------------------NCAGDATMEALL 62 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH-----------------------TCCCCSSHHHHH
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-----------------------CCCCcCCHHHHh
Confidence 4899999999999999999887 78865 8899998876643210 12224455 444
Q ss_pred --CCCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHh
Q 004726 386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVG 432 (733)
Q Consensus 386 --~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 432 (733)
.++|+|++|+|..... ++..... ..+. +++....+....+..
T Consensus 63 ~~~~~D~V~i~tp~~~h~--~~~~~al---~~gk~vl~EKP~~~~~~~~~ 107 (354)
T 3db2_A 63 AREDVEMVIITVPNDKHA--EVIEQCA---RSGKHIYVEKPISVSLDHAQ 107 (354)
T ss_dssp HCSSCCEEEECSCTTSHH--HHHHHHH---HTTCEEEEESSSCSSHHHHH
T ss_pred cCCCCCEEEEeCChHHHH--HHHHHHH---HcCCEEEEccCCCCCHHHHH
Confidence 5799999999976654 3222222 2333 455444455555433
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.012 Score=65.41 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=93.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.-++.....+.+..+++.+... .+-+|.|+. |.|+.+.+-... ...+.+...+.. .+ .-..|.|++
T Consensus 104 gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~~s-----l~~~~~i~~~~~--~~-s~~iP~Isv 169 (522)
T 1x0u_A 104 GGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGALS-----LEGYGAVFKMNV--MA-SGVIPQITI 169 (522)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHHH-----HHHHHHHHHHHH--HH-TTTSCEEEE
T ss_pred CccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHHHH-----HHHHHHHHHHHH--Hh-CCCCcEEEE
Confidence 4789999999999999998765 466788875 445555432110 001111111111 12 345999999
Q ss_pred eCCcccchhhHHhhhcCEEEEeCC-c-eEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH-----H--HH
Q 004726 105 VEGLALGGGLELAMGCHARIAAPK-T-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----E--GW 175 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~~-a-~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~-----e--A~ 175 (733)
+.|+|.||+......||++|+.++ + .+++ .|+..... .+|+.++.+ + +.
T Consensus 170 v~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~--------------------aGP~vI~~--~~ge~~~~e~lggae~~~~ 227 (522)
T 1x0u_A 170 MAGPAAGGAVYSPALTDFIIMIKGDAYYMFV--------------------TGPEITKV--VLGEEVSFQDLGGAVVHAT 227 (522)
T ss_dssp ECSEEEGGGGHHHHHSSEEEEECSTTCEEES--------------------SCHHHHHH--TTCCCCCHHHHHBHHHHHH
T ss_pred EcCCCchHHHHHHhcCCeEEEecCCccEEEe--------------------cCHHHHHH--HhCCcCChhhcchHHHHhh
Confidence 999999999999999999999987 7 6665 22222211 567788764 2 23
Q ss_pred HcCCccEEcCc-chHHHHHHHHHHHH
Q 004726 176 KLGLIDAVVTS-EELLKVSRLWALDI 200 (733)
Q Consensus 176 ~~Glv~~vv~~-~~l~~~a~~~a~~~ 200 (733)
+.|++|.++++ .++.+.+.++..-+
T Consensus 228 ~~G~~d~vv~~~~~~~~~~~~ll~~l 253 (522)
T 1x0u_A 228 KSGVVHFMVDSEQEAINLTKRLLSYL 253 (522)
T ss_dssp TTCCCSEEESCHHHHHHHHHHHHHHS
T ss_pred cCceeEEEeCCHHHHHHHHHHHHHhc
Confidence 68999999985 45666666665444
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0021 Score=68.47 Aligned_cols=100 Identities=16% Similarity=0.034 Sum_probs=61.9
Q ss_pred CCCcceEEEEcCCcCcH-HHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC
Q 004726 305 PRGVRKVAVIGGGLMGS-GIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (733)
Q Consensus 305 ~~~~~kI~VIG~G~mG~-~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (733)
+|+..||+|||+|.||. .++..+.+. +++|+ ++|+++++++...+.. .+...++
T Consensus 24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~ 80 (350)
T 3rc1_A 24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF-----------------------GGEPVEG 80 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH-----------------------CSEEEES
T ss_pred CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc-----------------------CCCCcCC
Confidence 34456899999999998 789988887 77876 8899998876543211 1222345
Q ss_pred c-cccC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHh
Q 004726 382 Y-SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVG 432 (733)
Q Consensus 382 ~-~~l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 432 (733)
+ +.++ ++|+|+.|+|..... ++..... ..+. +++-..-+....+..
T Consensus 81 ~~~ll~~~~~D~V~i~tp~~~h~--~~~~~al---~aGk~Vl~EKP~a~~~~ea~ 130 (350)
T 3rc1_A 81 YPALLERDDVDAVYVPLPAVLHA--EWIDRAL---RAGKHVLAEKPLTTDRPQAE 130 (350)
T ss_dssp HHHHHTCTTCSEEEECCCGGGHH--HHHHHHH---HTTCEEEEESSSCSSHHHHH
T ss_pred HHHHhcCCCCCEEEECCCcHHHH--HHHHHHH---HCCCcEEEeCCCCCCHHHHH
Confidence 5 3343 689999999965553 3333322 2333 444434455554433
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.012 Score=65.83 Aligned_cols=135 Identities=15% Similarity=0.038 Sum_probs=90.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh--cCCCcEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIV 102 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~kp~I 102 (733)
.-++.....+.+..+++.+.+. .+-+|.|.. |.|+.+.+-.. .+.. +.+++ .++. .-..|.|
T Consensus 121 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~~--------sl~~-~~~i~-~~~~~~s~~iP~I 184 (548)
T 2bzr_A 121 GGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGVV--------SLGL-YSRIF-RNNILASGVIPQI 184 (548)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTTH--------HHHH-HHHHH-HHHHHTTTTSCEE
T ss_pred cCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHHH--------HHHH-HHHHH-HHHHHhcCCCcEE
Confidence 4799999999999999998865 466788875 44555543211 0111 11223 2222 3349999
Q ss_pred EEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH-----H--H
Q 004726 103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----E--G 174 (733)
Q Consensus 103 aav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~-----e--A 174 (733)
+++.|+|.||+......||++|+.++ +.+++. |+..... .+|+.++.+ + +
T Consensus 185 svv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~~e~lggae~h~ 242 (548)
T 2bzr_A 185 SLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTGEEVTMEELGGAHTHM 242 (548)
T ss_dssp EEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHBHHHHH
T ss_pred EEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHHH--HhCCcCChHhcccHHHHh
Confidence 99999999999988889999999987 877754 3322222 457888864 2 2
Q ss_pred HHcCCccEEcCcc-hHHHHHHHHH
Q 004726 175 WKLGLIDAVVTSE-ELLKVSRLWA 197 (733)
Q Consensus 175 ~~~Glv~~vv~~~-~l~~~a~~~a 197 (733)
.+.|++|.+++++ ++.+.+.++.
T Consensus 243 ~~sG~~d~vv~d~~~~~~~~r~ll 266 (548)
T 2bzr_A 243 AKSGTAHYAASGEQDAFDYVRELL 266 (548)
T ss_dssp HTSSCCSEEESSHHHHHHHHHHHH
T ss_pred hccCceeEEeCCHHHHHHHHHHHH
Confidence 3689999999753 4444444443
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0026 Score=67.14 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=61.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. . .+. .+++ +.+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~-~~~-~~~~~~~l 59 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----------------------Y-GCE-VRTIDAIE 59 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------------------T-TCE-ECCHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----------------------h-CCC-cCCHHHHh
Confidence 5899999999999999999985 77877 799999887654221 0 122 3444 344
Q ss_pred C--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh
Q 004726 386 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 432 (733)
Q Consensus 386 ~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 432 (733)
+ ++|+|+.|+|..... ++.....+. ...+++....+....+..
T Consensus 60 ~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~~~ 104 (331)
T 4hkt_A 60 AAADIDAVVICTPTDTHA--DLIERFARA--GKAIFCEKPIDLDAERVR 104 (331)
T ss_dssp HCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEECSCSCSSHHHHH
T ss_pred cCCCCCEEEEeCCchhHH--HHHHHHHHc--CCcEEEecCCCCCHHHHH
Confidence 4 799999999965543 333332221 122454444455555443
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0018 Score=68.84 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=61.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. .+.....+++ +.+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~ll 60 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------------------LGVEKAYKDPHELI 60 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------------------HTCSEEESSHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------------------hCCCceeCCHHHHh
Confidence 4899999999999999999875 67776 789999887664321 1111234555 344
Q ss_pred C--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHh
Q 004726 386 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVG 432 (733)
Q Consensus 386 ~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 432 (733)
+ ++|+|++|+|..... ++..... ..+. +++....+..+.+..
T Consensus 61 ~~~~~D~V~i~tp~~~h~--~~~~~al---~~gk~v~~EKP~~~~~~e~~ 105 (344)
T 3ezy_A 61 EDPNVDAVLVCSSTNTHS--ELVIACA---KAKKHVFCEKPLSLNLADVD 105 (344)
T ss_dssp HCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEEESCSCSCHHHHH
T ss_pred cCCCCCEEEEcCCCcchH--HHHHHHH---hcCCeEEEECCCCCCHHHHH
Confidence 4 799999999955443 3333322 2333 444444455555433
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.002 Score=65.86 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=35.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (733)
++|.|||+|.||.+++..|+..|. +|++++|+.++++..
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~l 159 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL 159 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 899999999887654
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0036 Score=65.48 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=61.2
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeC--ChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC--c
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y 382 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~--~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~ 382 (733)
||+|+|+ |.+|.+++..|+..|+ +++++|+ ++++++.....+.... . ..+. .-.+..+++ .
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~--~~~~---------~~~i~~~~d~l~ 69 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-A--GTRS---------DANIYVESDENL 69 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-T--TSCC---------CCEEEEEETTCG
T ss_pred EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-H--hcCC---------CeEEEeCCcchH
Confidence 7999999 9999999999998885 7999999 7765443222221110 0 0000 002222333 5
Q ss_pred cccCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 383 SEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 383 ~~l~~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+++++||+||.+.- . +..+.+.+.+.+.++. +.++.
T Consensus 70 ~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vl 119 (313)
T 1hye_A 70 RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIF 119 (313)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEE
T ss_pred HHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEE
Confidence 78999999998872 1 2345556667777777 55444
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0012 Score=67.77 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=36.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|+|+|.||.+++..|++.|.+|++++|++++++...
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~ 159 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELA 159 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5799999999999999999999999999999998876653
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0011 Score=68.24 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=36.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
++|.|+|+|.||.+++..|++.|. +|++++|++++++...+
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~ 168 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAE 168 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 579999999999999999999996 99999999988776543
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0021 Score=68.52 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=35.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|+|+|+|.||..+|+.|...|.+|+++|++++++++.
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~ 212 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA 212 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 479999999999999999999999999999999876653
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0023 Score=68.47 Aligned_cols=97 Identities=18% Similarity=0.096 Sum_probs=60.6
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
+..||+|||+|.||...+..+.+. +++|+ ++|+++++++.+. +. .+...+++ +
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~-------------g~~~~~~~~~ 59 (359)
T 3e18_A 4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QK-------------GLKIYESYEA 59 (359)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TT-------------TCCBCSCHHH
T ss_pred CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hc-------------CCceeCCHHH
Confidence 345899999999999999998876 67876 6799998765321 11 12334555 3
Q ss_pred ccC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHh
Q 004726 384 EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVG 432 (733)
Q Consensus 384 ~l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 432 (733)
.++ ++|+|++|+|..... ++..+.. ..+. +++-...+....+..
T Consensus 60 ll~~~~~D~V~i~tp~~~h~--~~~~~al---~aGkhVl~EKP~a~~~~ea~ 106 (359)
T 3e18_A 60 VLADEKVDAVLIATPNDSHK--ELAISAL---EAGKHVVCEKPVTMTSEDLL 106 (359)
T ss_dssp HHHCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEEESSCCSSHHHHH
T ss_pred HhcCCCCCEEEEcCCcHHHH--HHHHHHH---HCCCCEEeeCCCcCCHHHHH
Confidence 343 799999999965543 3333322 2333 444433445554433
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0025 Score=66.51 Aligned_cols=95 Identities=19% Similarity=0.293 Sum_probs=60.6
Q ss_pred ceEEEEc-CCcCcHHHHHHHHHC-C--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc---ccC
Q 004726 309 RKVAVIG-GGLMGSGIATAHILN-N--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLD 381 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~~-G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~ 381 (733)
+||+||| +|.+|.++|..|+.. + .+++++|+++ .++ +.. + . +.+... .-.+.. +.+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~-G~a-----~-D-l~~~~~--------~~~v~~~~~~~~ 63 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTP-GVA-----V-D-LSHIPT--------AVKIKGFSGEDA 63 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THH-HHH-----H-H-HHTSCS--------SEEEEEECSSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-Cch-hHH-----H-H-hhCCCC--------CceEEEecCCCc
Confidence 3899999 899999999999875 5 4899999987 332 110 0 0 111100 012222 245
Q ss_pred ccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 382 ~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
++++++||+||.+..- +..+.+++.+.+.++++ +++++.
T Consensus 64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vlv 116 (312)
T 3hhp_A 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGI 116 (312)
T ss_dssp HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEE
T ss_pred HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEE
Confidence 6889999999998731 33455566667888875 444443
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0042 Score=65.84 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=49.9
Q ss_pred CcceEEEEcCCcCcHHHHHHHH-H-CCCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 307 GVRKVAVIGGGLMGSGIATAHI-L-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~-~-~G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
++.||+|||+|.||..++..+. + .|++| .++|+++++++...+. .| .....+++
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~----------~g------------~~~~~~~~~ 64 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE----------LG------------VETTYTNYK 64 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT----------TC------------CSEEESCHH
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH----------hC------------CCcccCCHH
Confidence 3468999999999999999998 5 47775 5789999887653210 11 11223444
Q ss_pred cccC--CCCEEEEeccCChH
Q 004726 383 SEFK--DVDMVIEAVIESVP 400 (733)
Q Consensus 383 ~~l~--~aDlVI~avpe~~~ 400 (733)
+.++ ++|+|++|+|....
T Consensus 65 ~~l~~~~~D~V~i~tp~~~h 84 (346)
T 3cea_A 65 DMIDTENIDAIFIVAPTPFH 84 (346)
T ss_dssp HHHTTSCCSEEEECSCGGGH
T ss_pred HHhcCCCCCEEEEeCChHhH
Confidence 3444 69999999995544
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0021 Score=65.79 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=35.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+|.||.+++..|++.|.+|+++||++++++..
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~l 158 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEEL 158 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence 579999999999999999999999999999999887654
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0029 Score=57.80 Aligned_cols=103 Identities=11% Similarity=0.042 Sum_probs=63.9
Q ss_pred ceEEEEcC----CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
++|+|||+ |.||..++..|.+.|++ +|++|+.+... ....+....++++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~e 66 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLLD 66 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGGG
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHHH
Confidence 47999999 89999999999999997 66677653110 0112344445544
Q ss_pred c-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccC-CCCcEEE
Q 004726 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIG 443 (733)
Q Consensus 385 l-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~-~~~~~ig 443 (733)
+ ..+|++|.++| .+...++++++.+.-.+ .++. ++++.. .++.+... ..-+++|
T Consensus 67 l~~~vDlavi~vp--~~~~~~v~~~~~~~gi~-~i~~-~~g~~~-~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 67 LKEPVDILDVFRP--PSALMDHLPEVLALRPG-LVWL-QSGIRH-PEFEKALKEAGIPVVA 122 (140)
T ss_dssp CCSCCSEEEECSC--HHHHTTTHHHHHHHCCS-CEEE-CTTCCC-HHHHHHHHHTTCCEEE
T ss_pred CCCCCCEEEEEeC--HHHHHHHHHHHHHcCCC-EEEE-cCCcCH-HHHHHHHHHcCCEEEc
Confidence 3 56999999999 56667777776554333 4443 333332 34443332 3345554
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0016 Score=68.73 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=64.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
-||+|+|+ |.+|.+++..|+.... ++.++|+++.... + +.+.-.+ ..... .....+..++
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~-~-~Gva~DL----~~~~~------~~~~~~~~~~ 92 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKA-L-AGVEAEL----EDCAF------PLLDKVVVTA 92 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHH-H-HHHHHHH----HHTTC------TTEEEEEEES
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCcccc-c-hhhhhhh----hhcCc------cCCCcEEEcC
Confidence 48999997 9999999999998754 7999999764311 1 1100001 11100 0112233344
Q ss_pred Cc-cccCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 381 DY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 381 ~~-~~l~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
+. +++++||+||.+. |- +..+.+.+.+.+.++++++++|+..+
T Consensus 93 ~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvs 150 (345)
T 4h7p_A 93 DPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVG 150 (345)
T ss_dssp CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeC
Confidence 44 7899999999876 21 34466666677888888888654433
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0023 Score=66.98 Aligned_cols=92 Identities=21% Similarity=0.124 Sum_probs=58.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
.||+|||+|.||..++..+.+. ++++ .++|+++++++...+ .+...+++ +.+
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~-------------------------~~~~~~~~~~~l 65 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP-------------------------GCVIESDWRSVV 65 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT-------------------------TCEEESSTHHHH
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh-------------------------hCcccCCHHHHh
Confidence 5899999999999999999886 6775 489999887543210 02234455 445
Q ss_pred C--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHH
Q 004726 386 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI 430 (733)
Q Consensus 386 ~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~ 430 (733)
+ ++|+|++|+|..... ++..+. +..+. +++....+....+
T Consensus 66 ~~~~~D~V~i~tp~~~h~--~~~~~a---l~~Gk~v~~eKP~~~~~~~ 108 (315)
T 3c1a_A 66 SAPEVEAVIIATPPATHA--EITLAA---IASGKAVLVEKPLTLDLAE 108 (315)
T ss_dssp TCTTCCEEEEESCGGGHH--HHHHHH---HHTTCEEEEESSSCSCHHH
T ss_pred hCCCCCEEEEeCChHHHH--HHHHHH---HHCCCcEEEcCCCcCCHHH
Confidence 3 799999999954432 333332 23343 4444344555543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0056 Score=64.48 Aligned_cols=69 Identities=19% Similarity=0.120 Sum_probs=48.5
Q ss_pred eEEEEcCCcCcHHH-HHHHHHCCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 310 KVAVIGGGLMGSGI-ATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 310 kI~VIG~G~mG~~i-A~~l~~~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
||+|||+|.||..+ +..+.+.|++|+ ++|+++++++...+. .| .....+++ +.++
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~----------~g------------~~~~~~~~~~~l~ 59 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATE----------NG------------IGKSVTSVEELVG 59 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------TT------------CSCCBSCHHHHHT
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHH----------cC------------CCcccCCHHHHhc
Confidence 79999999999998 778877788866 789999886653221 11 11123444 3344
Q ss_pred --CCCEEEEeccCChH
Q 004726 387 --DVDMVIEAVIESVP 400 (733)
Q Consensus 387 --~aDlVI~avpe~~~ 400 (733)
++|+|++|+|....
T Consensus 60 ~~~~D~V~i~tp~~~h 75 (332)
T 2glx_A 60 DPDVDAVYVSTTNELH 75 (332)
T ss_dssp CTTCCEEEECSCGGGH
T ss_pred CCCCCEEEEeCChhHh
Confidence 59999999995443
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0015 Score=68.99 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=59.5
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
+++.||+|||+|.||..++..+.+. +.+|+ ++|+++++++...+ . .+.....+++
T Consensus 3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~-----------~-----------~~~~~~~~~~~ 60 (329)
T 3evn_A 3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFAN-----------K-----------YHLPKAYDKLE 60 (329)
T ss_dssp --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------C-----------CCCSCEESCHH
T ss_pred CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------H-----------cCCCcccCCHH
Confidence 3456899999999999999998875 45655 77999887554311 1 1111234555
Q ss_pred cccC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHh
Q 004726 383 SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVG 432 (733)
Q Consensus 383 ~~l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 432 (733)
+.+. ++|+|++|+|..... ++.... +..+. +++-..-+....+..
T Consensus 61 ~ll~~~~~D~V~i~tp~~~h~--~~~~~a---l~aGk~Vl~EKP~a~~~~e~~ 108 (329)
T 3evn_A 61 DMLADESIDVIYVATINQDHY--KVAKAA---LLAGKHVLVEKPFTLTYDQAN 108 (329)
T ss_dssp HHHTCTTCCEEEECSCGGGHH--HHHHHH---HHTTCEEEEESSCCSSHHHHH
T ss_pred HHhcCCCCCEEEECCCcHHHH--HHHHHH---HHCCCeEEEccCCcCCHHHHH
Confidence 4444 799999999965543 333332 22333 455444455555433
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00029 Score=72.33 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=34.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK 346 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~ 346 (733)
++|.|||+|.||.+++..|++.|. +|++++|++++++.
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~ 156 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN 156 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 479999999999999999999999 99999999887544
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0035 Score=66.88 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=61.8
Q ss_pred CcceEEEEcCCcCcHHHHHHHH-H-CCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhh-ccccccCc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-MLKGVLDY 382 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~-~i~~~~~~ 382 (733)
+..||+|||+|.||...+..+. + .+++|+ ++|+++++++...+. .+ .....+++
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------------------~g~~~~~~~~~ 79 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------------------YAIEAKDYNDY 79 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------------------HTCCCEEESSH
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------------------hCCCCeeeCCH
Confidence 3458999999999999999998 4 477866 799999887664321 11 12334555
Q ss_pred -cccC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHH
Q 004726 383 -SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIV 431 (733)
Q Consensus 383 -~~l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l 431 (733)
+.++ ++|+|++|+|..... ++..... ..+. +++-..-+....+.
T Consensus 80 ~~ll~~~~~D~V~i~tp~~~h~--~~~~~al---~aGk~Vl~EKPla~~~~e~ 127 (357)
T 3ec7_A 80 HDLINDKDVEVVIITASNEAHA--DVAVAAL---NANKYVFCEKPLAVTAADC 127 (357)
T ss_dssp HHHHHCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEEESSSCSSHHHH
T ss_pred HHHhcCCCCCEEEEcCCcHHHH--HHHHHHH---HCCCCEEeecCccCCHHHH
Confidence 3343 589999999955543 3333322 2333 44443434555443
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0035 Score=68.77 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=60.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|.|+|+|.||.++|+.|+..|.+|+++|++++.++.+.. .+ ....+..+.+..+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----------~g-------------~dv~~lee~~~~a 321 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATM-----------EG-------------LQVLTLEDVVSEA 321 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECCGGGTTTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------hC-------------CccCCHHHHHHhc
Confidence 57999999999999999999999999999999987665421 11 1222222567889
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
|+|+++....--+.. +....++++.+|+...
T Consensus 322 DvVi~atG~~~vl~~----e~l~~mk~gaiVvNaG 352 (488)
T 3ond_A 322 DIFVTTTGNKDIIML----DHMKKMKNNAIVCNIG 352 (488)
T ss_dssp SEEEECSSCSCSBCH----HHHTTSCTTEEEEESS
T ss_pred CEEEeCCCChhhhhH----HHHHhcCCCeEEEEcC
Confidence 999988642222222 2344578888876433
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0072 Score=65.70 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=36.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
.+|.|+|.|.+|..+|..|.+.|++|+++|.|++.++.+
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~ 43 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETL 43 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 369999999999999999999999999999999988765
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0065 Score=55.76 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=62.5
Q ss_pred ceEEEEcC----CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
++|+|||+ |.+|..++..|.+.|++ +|++++.. +. ...+....++++
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~~ 73 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVLD 73 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGGG
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHHH
Confidence 47999999 79999999999999997 55666542 10 012333444533
Q ss_pred -cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccC-CCCcEEE
Q 004726 385 -FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIG 443 (733)
Q Consensus 385 -l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~-~~~~~ig 443 (733)
...+|++|.++| .+...+++.++.+.-. ..++.. +++ .-.++.+... ..-+++|
T Consensus 74 l~~~vDlvvi~vp--~~~~~~vv~~~~~~gi-~~i~~~-~g~-~~~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 74 IPDKIEVVDLFVK--PKLTMEYVEQAIKKGA-KVVWFQ-YNT-YNREASKKADEAGLIIVA 129 (144)
T ss_dssp CSSCCSEEEECSC--HHHHHHHHHHHHHHTC-SEEEEC-TTC-CCHHHHHHHHHTTCEEEE
T ss_pred cCCCCCEEEEEeC--HHHHHHHHHHHHHcCC-CEEEEC-CCc-hHHHHHHHHHHcCCEEEc
Confidence 357999999999 5667777777655432 345432 333 3334444332 2334554
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0046 Score=65.54 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=60.6
Q ss_pred ceEEEEcCCcCcHHHHHHHH-H-CCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhh-ccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-MLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~-~i~~~~~~-~ 383 (733)
.||+|||+|.||..++..+. + .+++|+ ++|+++++++...+. .+ .....+++ +
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~----------------------~g~~~~~~~~~~~ 60 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ----------------------YQLNATVYPNDDS 60 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH----------------------TTCCCEEESSHHH
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------------------hCCCCeeeCCHHH
Confidence 48999999999999999998 4 477766 789999887664221 11 12344555 3
Q ss_pred ccC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHH
Q 004726 384 EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIV 431 (733)
Q Consensus 384 ~l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l 431 (733)
.++ ++|+|++|+|..... ++.... +..+. +++-..-+....+.
T Consensus 61 ll~~~~~D~V~i~tp~~~h~--~~~~~a---l~~Gk~vl~EKP~a~~~~e~ 106 (344)
T 3mz0_A 61 LLADENVDAVLVTSWGPAHE--SSVLKA---IKAQKYVFCEKPLATTAEGC 106 (344)
T ss_dssp HHHCTTCCEEEECSCGGGHH--HHHHHH---HHTTCEEEECSCSCSSHHHH
T ss_pred HhcCCCCCEEEECCCchhHH--HHHHHH---HHCCCcEEEcCCCCCCHHHH
Confidence 444 499999999955543 333332 22333 44433334555443
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0023 Score=68.35 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=60.5
Q ss_pred CcceEEEEcCCcCcHH-HHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
+..||+|||+|.||.. ++..+.+. +.+|+ ++|+++++++...+ . .+.....+++
T Consensus 4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~-----------~-----------~~~~~~~~~~~ 61 (359)
T 3m2t_A 4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR-----------F-----------ISDIPVLDNVP 61 (359)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG-----------T-----------SCSCCEESSHH
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------h-----------cCCCcccCCHH
Confidence 3458999999999985 88888776 67876 88999988665311 1 1123345565
Q ss_pred cccC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHh
Q 004726 383 SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVG 432 (733)
Q Consensus 383 ~~l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 432 (733)
+.++ +.|+|++|+| ...-.++..+.. ..+. +++-..-+....+..
T Consensus 62 ~ll~~~~vD~V~i~tp--~~~H~~~~~~al---~aGkhVl~EKPla~~~~e~~ 109 (359)
T 3m2t_A 62 AMLNQVPLDAVVMAGP--PQLHFEMGLLAM---SKGVNVFVEKPPCATLEELE 109 (359)
T ss_dssp HHHHHSCCSEEEECSC--HHHHHHHHHHHH---HTTCEEEECSCSCSSHHHHH
T ss_pred HHhcCCCCCEEEEcCC--cHHHHHHHHHHH---HCCCeEEEECCCcCCHHHHH
Confidence 3343 5699999999 433334433332 2333 444333345544433
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0028 Score=64.03 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=31.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
++|.|||+|.+|+.+|..|++.|. +|+++|.+.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 479999999999999999999997 899999997
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0021 Score=66.22 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=37.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~ 350 (733)
+++.|+|+|.+|.+++..|++.|. +|++++|++++++...+.
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~ 170 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 579999999999999999999998 799999999988765443
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0043 Score=63.38 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=36.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (733)
+++.|+|+|.+|.+++..|++.|. +|++++|++++++...
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la 161 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR 161 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999996 9999999998877654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0021 Score=69.84 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=49.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|+|||+|.||..+++.+...|. +|+++|+++++++...+.+ |. ..+. ..++ +.+.
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~----------g~----------~~~~-~~~l~~~l~ 226 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------GG----------EAVR-FDELVDHLA 226 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------TC----------EECC-GGGHHHHHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC----------ceec-HHhHHHHhc
Confidence 479999999999999999999998 9999999998764332111 10 0011 1122 4457
Q ss_pred CCCEEEEeccCCh
Q 004726 387 DVDMVIEAVIESV 399 (733)
Q Consensus 387 ~aDlVI~avpe~~ 399 (733)
++|+||+|++...
T Consensus 227 ~aDvVi~at~~~~ 239 (404)
T 1gpj_A 227 RSDVVVSATAAPH 239 (404)
T ss_dssp TCSEEEECCSSSS
T ss_pred CCCEEEEccCCCC
Confidence 8999999997543
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0061 Score=63.49 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=49.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
..||+|||+|.||..++..+.+. +++|+ ++|+++++++. .|. .....+++...
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~-----------~~~~~~~l~~~ 63 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQ-----------PFRVVSDIEQL 63 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCT-----------TSCEESSGGGS
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCC-----------CcCCHHHHHhC
Confidence 35899999999999999999874 67887 78999875432 110 01112333333
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
.++|+||+|+| ...-.++... .+..+.-+++
T Consensus 64 ~~~DvViiatp--~~~h~~~~~~---al~aG~~Vi~ 94 (304)
T 3bio_A 64 ESVDVALVCSP--SREVERTALE---ILKKGICTAD 94 (304)
T ss_dssp SSCCEEEECSC--HHHHHHHHHH---HHTTTCEEEE
T ss_pred CCCCEEEECCC--chhhHHHHHH---HHHcCCeEEE
Confidence 78999999999 3333343333 3344554443
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.019 Score=63.85 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=100.9
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
|.-|+|. .-+++++..+.+.++++.+.+. .+-+|.|.-.+. |..|.+-++. ........++ ..+.
T Consensus 329 via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~G-~~~G~~~E~~----------G~~~~~Ak~l-~~~~ 395 (522)
T 1x0u_A 329 IVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTPG-YVPGTDQEYK----------GIIRHGAKML-YAFA 395 (522)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCSHHHHHT----------THHHHHHHHH-HHHH
T ss_pred EEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCCC-CCCchHHHHH----------HHHHHHHHHH-HHHH
Confidence 3334553 2689999999999999988754 567777764432 3333221111 1112233455 5688
Q ss_pred cCCCcEEEEeCCcccchhhHHhhh----cCEEEEeCCceEeCccccCCCCCChhhhhhhccc-cCH----HHH-HHHH--
Q 004726 96 DCKKPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL----SKA-IEMM-- 163 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lala----cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~-~G~----~~a-~~l~-- 163 (733)
....|.|++|-|.|.|||...... +|+++|.+++.+++-. .-|.+..+-+. +-. ... .++.
T Consensus 396 ~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~g-------pegaa~Il~r~~i~~~~d~~~~~~~l~~~ 468 (522)
T 1x0u_A 396 EATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTG-------PEGAVRILYRKEIQQASNPDDVLKQRIAE 468 (522)
T ss_dssp HCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSC-------HHHHHHHHTSSSSSSSSSSSSSSHHHHHH
T ss_pred hCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecC-------HHHHHHHHhhhhhhcccCHHHHHHHHHHH
Confidence 899999999999999998755444 9999999998887522 22222222221 110 000 0111
Q ss_pred HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
+.-..-++..+++.|+||.|+++.++.+......+.+.
T Consensus 469 y~~~~~~~~~~~~~G~iD~II~p~~tR~~L~~~L~~~~ 506 (522)
T 1x0u_A 469 YRKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLK 506 (522)
T ss_dssp HHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHhcCCCcEeECHHHHHHHHHHHHHHHh
Confidence 00112366789999999999999888776665555543
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0052 Score=64.90 Aligned_cols=72 Identities=15% Similarity=0.015 Sum_probs=50.7
Q ss_pred cceEEEEcCCcCcH-HHHHHHHHCCCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 308 VRKVAVIGGGLMGS-GIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~-~iA~~l~~~G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
..||+|||+|.||. .++..+...|++| .++|+++++++...+. .+.....+++ +.
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~~l 61 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL----------------------FPSVPFAASAEQL 61 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH----------------------STTCCBCSCHHHH
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh----------------------cCCCcccCCHHHH
Confidence 34899999999996 6788787788986 5889999876654221 1123344555 33
Q ss_pred cC--CCCEEEEeccCChHH
Q 004726 385 FK--DVDMVIEAVIESVPL 401 (733)
Q Consensus 385 l~--~aDlVI~avpe~~~~ 401 (733)
++ ++|+|++|+|.....
T Consensus 62 l~~~~~D~V~i~tp~~~h~ 80 (336)
T 2p2s_A 62 ITDASIDLIACAVIPCDRA 80 (336)
T ss_dssp HTCTTCCEEEECSCGGGHH
T ss_pred hhCCCCCEEEEeCChhhHH
Confidence 44 699999999965553
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0053 Score=63.36 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=50.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|.|+|+|.||.++|..|++.| +|++++|+.++++...+.+... .... . . -.+..++-.+.+.++
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~----~~~~---~---~---~~~d~~~~~~~~~~~ 194 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEK----LNKK---F---G---EEVKFSGLDVDLDGV 194 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHH----HTCC---H---H---HHEEEECTTCCCTTC
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhh----cccc---c---c---eeEEEeeHHHhhCCC
Confidence 47999999999999999999999 9999999998876654433210 0000 0 0 001111113567889
Q ss_pred CEEEEecc
Q 004726 389 DMVIEAVI 396 (733)
Q Consensus 389 DlVI~avp 396 (733)
|+||.+++
T Consensus 195 DilVn~ag 202 (287)
T 1nvt_A 195 DIIINATP 202 (287)
T ss_dssp CEEEECSC
T ss_pred CEEEECCC
Confidence 99999987
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0036 Score=64.22 Aligned_cols=39 Identities=15% Similarity=0.016 Sum_probs=35.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (733)
+++.|+|+|.+|.+++..|++.|. +|++++|+.++++..
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L 162 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI 162 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 589999999999999999999998 999999999876653
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0045 Score=66.25 Aligned_cols=69 Identities=26% Similarity=0.241 Sum_probs=48.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc--Cc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--DY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~--~~-~~l 385 (733)
+||.|||+|.+|+.+|..|++ .++|++.|++.++++++.+. ...- .+...+ .+ +.+
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~--------~~~~------------~~d~~d~~~l~~~~ 75 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF--------ATPL------------KVDASNFDKLVEVM 75 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT--------SEEE------------ECCTTCHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc--------CCcE------------EEecCCHHHHHHHH
Confidence 379999999999999998865 58999999999887764221 0000 011111 11 346
Q ss_pred CCCCEEEEeccCC
Q 004726 386 KDVDMVIEAVIES 398 (733)
Q Consensus 386 ~~aDlVI~avpe~ 398 (733)
+++|+||.|+|..
T Consensus 76 ~~~DvVi~~~p~~ 88 (365)
T 3abi_A 76 KEFELVIGALPGF 88 (365)
T ss_dssp TTCSEEEECCCGG
T ss_pred hCCCEEEEecCCc
Confidence 8999999999854
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0018 Score=70.18 Aligned_cols=39 Identities=26% Similarity=0.160 Sum_probs=35.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
.+|+|||+|.+|..+++.+...|.+|+++|++++.++.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 489999999999999999999999999999999887664
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.003 Score=67.58 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=37.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|+|+|.+|..+++.+...|.+|+++|+++++++.+.
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~ 207 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE 207 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 6899999999999999999999999999999999877653
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.074 Score=59.15 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.-++.....+.+..+++.+.+. .+-+|.|.-.| |+-+.+-... ...+.+...+.. ......|+|++
T Consensus 111 gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dSg-----GAR~qeg~~~-----l~g~~~~~~~~~---~~s~~iP~Isv 176 (527)
T 1vrg_A 111 GGSLGEMHAKKIVKLLDLALKM-GIPVIGINDSG-----GARIQEGVDA-----LAGYGEIFLRNT---LASGVVPQITV 176 (527)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC-----SBCGGGTHHH-----HHHHHHHHHHHH---HHTTTSCEEEE
T ss_pred CccccHHHHHHHHHHHHHHHHc-CCCEEEEECCC-----CCCccchhHH-----HHHHHHHHHHHH---HhCCCCCEEEE
Confidence 4789999999999999988765 45567776433 3333321110 001111111111 22456999999
Q ss_pred eCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH-----H--HHH
Q 004726 105 VEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----E--GWK 176 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~-----e--A~~ 176 (733)
|.|.|.|||......||++|+.++ +.+++ .|+..... .+|+.++.+ + +.+
T Consensus 177 v~Gp~~GG~a~s~al~D~vi~~~~~a~i~~--------------------aGP~vi~~--~~ge~v~~e~lggae~~~~~ 234 (527)
T 1vrg_A 177 IAGPCAGGAVYSPALTDFIVMVDQTARMFI--------------------TGPNVIKA--VTGEEISQEDLGGAMVHNQK 234 (527)
T ss_dssp EEEEEBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHHH--HHCCCCCHHHHHBHHHHHHT
T ss_pred EeCCCchHHHHHHHcCCeEEEecCceEEEe--------------------cCHHHHHH--HhCCCCCccccccHHHHhhc
Confidence 999999999988889999999987 66443 23222221 457777764 2 226
Q ss_pred cCCccEEcCcc-hHHHHHHHHH
Q 004726 177 LGLIDAVVTSE-ELLKVSRLWA 197 (733)
Q Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a 197 (733)
.|++|.+++++ ++.+.+.++.
T Consensus 235 ~G~vd~vv~d~~~~~~~~~~~L 256 (527)
T 1vrg_A 235 SGNAHFLADNDEKAMSLVRTLL 256 (527)
T ss_dssp SCCCSEEESSHHHHHHHHHHHH
T ss_pred ccceEEEecCHHHHHHHHHHHH
Confidence 89999999853 4545444443
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0032 Score=65.68 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=35.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC---hHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~e~~~~~~~ 349 (733)
+++.|+|+|-+|.+++..|++.|. +|++++|+ .++++...+
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~ 199 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVE 199 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHH
Confidence 579999999999999999999998 89999999 666665433
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.016 Score=61.89 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=59.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC-CCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
..||+|||+|.||..++..+.+. ++++ .++|+++++++...+. .| +. ......+++ +.
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~----------~~-~~--------~~~~~~~~~~~l 66 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NN-YP--------ESTKIHGSYESL 66 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-CC--------TTCEEESSHHHH
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hC-CC--------CCCeeeCCHHHH
Confidence 35899999999999999999875 5666 5889999876553221 01 00 012334455 33
Q ss_pred cC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHH
Q 004726 385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI 430 (733)
Q Consensus 385 l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~ 430 (733)
++ ++|+|++|+|..... ++..+ .+..+. +++-...+....+
T Consensus 67 l~~~~~D~V~i~tp~~~h~--~~~~~---al~aGk~V~~EKP~a~~~~e 110 (362)
T 1ydw_A 67 LEDPEIDALYVPLPTSLHV--EWAIK---AAEKGKHILLEKPVAMNVTE 110 (362)
T ss_dssp HHCTTCCEEEECCCGGGHH--HHHHH---HHTTTCEEEECSSCSSSHHH
T ss_pred hcCCCCCEEEEcCChHHHH--HHHHH---HHHCCCeEEEecCCcCCHHH
Confidence 43 699999999955442 33332 334454 4433223455543
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.01 Score=64.54 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=81.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCC----CHHHHHHH--hhcccccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKL----TQDKANNA--LKMLKGVL 380 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~----~~~~~~~~--~~~i~~~~ 380 (733)
-||||||+|.||..++..+.+. +.+| .++|+++++++.+.+.. +. ....+ +..+.... .+....++
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~---yG---~~~~~~~~~~~~~i~~a~~~g~~~v~~ 97 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTA---YG---DEENAREATTESAMTRAIEAGKIAVTD 97 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHH---HS---SSTTEEECSSHHHHHHHHHTTCEEEES
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh---cC---CccccccccchhhhhhhhccCCceEEC
Confidence 3799999999999999888754 5564 57899999877653321 00 00000 11111111 12345567
Q ss_pred Cc-cccC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCCCCC
Q 004726 381 DY-SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMP 454 (733)
Q Consensus 381 ~~-~~l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~~~~ 454 (733)
|+ +.++ +.|+|++|+|....-..-... .+..+.=|++........ ++.+.......+
T Consensus 98 D~eeLL~d~dIDaVviaTp~p~~H~e~a~~----AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv------------- 160 (446)
T 3upl_A 98 DNDLILSNPLIDVIIDATGIPEVGAETGIA----AIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI------------- 160 (446)
T ss_dssp CHHHHHTCTTCCEEEECSCCHHHHHHHHHH----HHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC-------------
T ss_pred CHHHHhcCCCCCEEEEcCCChHHHHHHHHH----HHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe-------------
Confidence 77 3444 689999999742111222222 223344333211222221 222221111111
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+.......+.....+.++.+.+|..++.++
T Consensus 161 ---l~~~~gdqp~~~~eLv~~a~~~G~~~v~~G 190 (446)
T 3upl_A 161 ---YSLGAGDEPSSCMELIEFVSALGYEVVSAG 190 (446)
T ss_dssp ---EEECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ---eeecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence 112222347778889999999999999996
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0021 Score=67.71 Aligned_cols=95 Identities=19% Similarity=0.150 Sum_probs=62.0
Q ss_pred ceEEEEc-CCcCcHHHHHHHHHCCC--e-----eEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc
Q 004726 309 RKVAVIG-GGLMGSGIATAHILNNI--Y-----VVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~~G~--~-----V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 378 (733)
.||+|+| +|.+|.++|..|+..|. + ++++|+++ +.++.....+ .+.... ....+..
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL--------~~~~~~------~~~~~~~ 69 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMEL--------QDCALP------LLKDVIA 69 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH--------HHTCCT------TEEEEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhh--------Hhhhhc------ccCCEEE
Confidence 4899999 79999999999999886 5 99999975 2332211111 111000 0122333
Q ss_pred ccC-ccccCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCe
Q 004726 379 VLD-YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHC 417 (733)
Q Consensus 379 ~~~-~~~l~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ 417 (733)
+++ ++++++||+||.+. |. +..+.+.+...+.++.+++.
T Consensus 70 ~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~ 123 (333)
T 5mdh_A 70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123 (333)
T ss_dssp ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred cCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 443 47899999999876 21 34566677778888887775
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0034 Score=67.70 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=35.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
.+|+|+|+|.+|..+++.+...|.+|+++|+++++++.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV 211 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 589999999999999999999999999999998876654
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.003 Score=69.53 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=35.6
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
.++|.|+|+|.||..++..|++.|++|+++|+++++++.
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~ 41 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK 41 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence 468999999999999999999999999999999887654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.015 Score=59.40 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=35.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
++||.|.|+|.+|+.++..|++.|++|++.+|+++..+.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 43 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA 43 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence 468999999999999999999999999999999876544
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.012 Score=63.86 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=37.0
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC---CeeEEEeCChHHHHHHHHH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G---~~V~~~d~~~e~~~~~~~~ 350 (733)
|+||+|+|+|.+|..++..|++.| .+|+++|++.+++++..+.
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~ 46 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQS 46 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999998 3999999999988775443
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.022 Score=62.28 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=50.9
Q ss_pred CCcceEEEEcCCcCcH-HHHHHHHHC-CCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 306 RGVRKVAVIGGGLMGS-GIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~-~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
++..||+|||+|.||. .++..+.+. +++| .++|+++++++...+. .| +.. ..+...+++
T Consensus 81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~----------~g-~~~-------~~~~~~~~~ 142 (433)
T 1h6d_A 81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YG-VDP-------RKIYDYSNF 142 (433)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TT-CCG-------GGEECSSSG
T ss_pred CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hC-CCc-------ccccccCCH
Confidence 3445899999999997 899988775 5675 5889999876653221 11 000 012234555
Q ss_pred -cccC--CCCEEEEeccCChH
Q 004726 383 -SEFK--DVDMVIEAVIESVP 400 (733)
Q Consensus 383 -~~l~--~aDlVI~avpe~~~ 400 (733)
+.++ ++|+|++|+|....
T Consensus 143 ~~ll~~~~vD~V~iatp~~~h 163 (433)
T 1h6d_A 143 DKIAKDPKIDAVYIILPNSLH 163 (433)
T ss_dssp GGGGGCTTCCEEEECSCGGGH
T ss_pred HHHhcCCCCCEEEEcCCchhH
Confidence 4444 79999999996544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0082 Score=59.75 Aligned_cols=38 Identities=16% Similarity=-0.042 Sum_probs=34.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+|.+|..+|..|.+.|+ |+++|++++.++.+
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~ 47 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL 47 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH
Confidence 579999999999999999999999 99999999887653
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.011 Score=62.83 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=50.7
Q ss_pred CCcceEEEEcCCcCcHH-HHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 306 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
++|-||||||+|.||.. .+..+.+. +.+|+ ++|++++++++..++ .+.-...+|+
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~d~ 78 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR----------------------FSVPHAFGSY 78 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH----------------------HTCSEEESSH
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------------------cCCCeeeCCH
Confidence 45679999999999975 56666665 67776 789999987765321 1222345566
Q ss_pred c-cc--CCCCEEEEeccCChHH
Q 004726 383 S-EF--KDVDMVIEAVIESVPL 401 (733)
Q Consensus 383 ~-~l--~~aDlVI~avpe~~~~ 401 (733)
+ .+ .+.|+|+.|+|.....
T Consensus 79 ~ell~~~~iDaV~I~tP~~~H~ 100 (350)
T 4had_A 79 EEMLASDVIDAVYIPLPTSQHI 100 (350)
T ss_dssp HHHHHCSSCSEEEECSCGGGHH
T ss_pred HHHhcCCCCCEEEEeCCCchhH
Confidence 3 33 4689999999965553
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.013 Score=62.21 Aligned_cols=105 Identities=14% Similarity=0.149 Sum_probs=62.4
Q ss_pred ceEEEEc-CCcCcHHHHHHHHHCCC-----eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-cC
Q 004726 309 RKVAVIG-GGLMGSGIATAHILNNI-----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD 381 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~~G~-----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~ 381 (733)
.||+||| +|.+|.++|..++..+. +|.++|.+.+..+...+...-. +.++... .+..+..+ .+
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amD----L~h~~~p------~~~~v~i~~~~ 102 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAME----LEDSLYP------LLREVSIGIDP 102 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTCT------TEEEEEEESCH
T ss_pred CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHh----HHhhhhh------hcCCcEEecCC
Confidence 5899999 79999999999999875 3888776544322222111101 1111100 01123333 34
Q ss_pred ccccCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 382 YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 382 ~~~l~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
++++++||+||.+. |- +..+.+.+...+.++..++++++..|
T Consensus 103 y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvs 158 (375)
T 7mdh_A 103 YEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 158 (375)
T ss_dssp HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 68999999999875 21 23444555556777756777665444
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.011 Score=58.06 Aligned_cols=39 Identities=8% Similarity=0.251 Sum_probs=34.1
Q ss_pred cceEEEEcC-CcCcHHHHHHHH-HCCCeeEEEeCChH-HHHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHI-LNNIYVVLKEVNSE-YLLK 346 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~-~~G~~V~~~d~~~e-~~~~ 346 (733)
|++|.|.|+ |.+|..++..|+ +.|++|++.+|+++ +++.
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~ 46 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP 46 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence 456999995 999999999999 89999999999988 6543
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.038 Score=54.43 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=77.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|.|||+|.+|..-+..|+++|.+|++++.+.... +..+.+.+.++ .+...-..+.+.++
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~----------l~~l~~~~~i~---------~i~~~~~~~dL~~a 92 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAE----------INEWEAKGQLR---------VKRKKVGEEDLLNV 92 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHH----------HHHHHHTTSCE---------EECSCCCGGGSSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHH----------HHHHHHcCCcE---------EEECCCCHhHhCCC
Confidence 589999999999999999999999999999764321 11122333221 11111122568899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCC--CCCCeeEEecCCCCCH
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTSA 466 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~--~~~~lveiv~~~~t~~ 466 (733)
|+||.|. ++.++...+.. .++.+..+ |...-+ +. ..|+.|. ..++++-.|.+...+|
T Consensus 93 dLVIaAT-~d~~~N~~I~~----~ak~gi~V--NvvD~p-----------~~---~~f~~Paiv~rg~l~iaIST~G~sP 151 (223)
T 3dfz_A 93 FFIVVAT-NDQAVNKFVKQ----HIKNDQLV--NMASSF-----------SD---GNIQIPAQFSRGRLSLAISTDGASP 151 (223)
T ss_dssp SEEEECC-CCTHHHHHHHH----HSCTTCEE--EC----------------C---CSEECCEEEEETTEEEEEECTTSCH
T ss_pred CEEEECC-CCHHHHHHHHH----HHhCCCEE--EEeCCc-----------cc---CeEEEeeEEEeCCEEEEEECCCCCc
Confidence 9999764 56666555433 34434332 222111 00 1122222 3346666677777899
Q ss_pred HHHHHHHHHHHH
Q 004726 467 QVILDLMTVGKI 478 (733)
Q Consensus 467 e~~~~~~~l~~~ 478 (733)
.....+++-++.
T Consensus 152 ~la~~iR~~ie~ 163 (223)
T 3dfz_A 152 LLTKRIKEDLSS 163 (223)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888887765
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=95.87 E-value=0.017 Score=60.83 Aligned_cols=97 Identities=10% Similarity=0.015 Sum_probs=59.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC---Ce-eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G---~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
.||+|||+|.||...+..+.+.+ ++ |.++|+++++++...+. .+.-...+++ +
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~----------------------~~~~~~~~~~~~ 60 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK----------------------HDIPKAYGSYEE 60 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH----------------------HTCSCEESSHHH
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH----------------------cCCCcccCCHHH
Confidence 48999999999999999987654 34 45789999887664321 1111234555 3
Q ss_pred ccC--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHh
Q 004726 384 EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVG 432 (733)
Q Consensus 384 ~l~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 432 (733)
.++ ++|+|++|+|..... ++..+.. ..+. +++-..-+....+..
T Consensus 61 ll~~~~vD~V~i~tp~~~H~--~~~~~al---~~GkhVl~EKP~a~~~~e~~ 107 (334)
T 3ohs_X 61 LAKDPNVEVAYVGTQHPQHK--AAVMLCL---AAGKAVLCEKPMGVNAAEVR 107 (334)
T ss_dssp HHHCTTCCEEEECCCGGGHH--HHHHHHH---HTTCEEEEESSSSSSHHHHH
T ss_pred HhcCCCCCEEEECCCcHHHH--HHHHHHH---hcCCEEEEECCCCCCHHHHH
Confidence 343 699999999965553 3333322 2333 455444445554433
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.051 Score=53.73 Aligned_cols=38 Identities=18% Similarity=0.065 Sum_probs=34.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
++|.|.|+ |.+|..++..|++.|++|++.+|+++.++.
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~ 60 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE 60 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred CeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence 57999998 999999999999999999999999987654
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.044 Score=58.34 Aligned_cols=97 Identities=7% Similarity=0.098 Sum_probs=59.9
Q ss_pred ceEEEEcCCcCcH-HHHHHHHHCCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGS-GIATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~-~iA~~l~~~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
-||||||+|.+|. .++..+...+.+|+ ++|+++++++...+. .+.....+++ +.+
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~~~~~~~~~~~~ll 84 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV----------------------YADARRIATAEEIL 84 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------------------SSSCCEESCHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH----------------------cCCCcccCCHHHHh
Confidence 4899999999995 57777777889855 889999987664321 1223345565 334
Q ss_pred C--CCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHh
Q 004726 386 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVG 432 (733)
Q Consensus 386 ~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~ 432 (733)
+ +.|+|++|+|.. .-.++..... ..+. +++-.--+....+..
T Consensus 85 ~~~~vD~V~I~tp~~--~H~~~~~~al---~aGkhVl~EKPla~~~~ea~ 129 (361)
T 3u3x_A 85 EDENIGLIVSAAVSS--ERAELAIRAM---QHGKDVLVDKPGMTSFDQLA 129 (361)
T ss_dssp TCTTCCEEEECCCHH--HHHHHHHHHH---HTTCEEEEESCSCSSHHHHH
T ss_pred cCCCCCEEEEeCChH--HHHHHHHHHH---HCCCeEEEeCCCCCCHHHHH
Confidence 3 589999999943 3334433332 2333 454444345554433
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0023 Score=65.39 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=58.4
Q ss_pred CcceEEEEc-CCcCcHHHHHHHHHC-CCeeEE-EeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 307 GVRKVAVIG-GGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 307 ~~~kI~VIG-~G~mG~~iA~~l~~~-G~~V~~-~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
++.||+|+| .|.||..++..+.+. +++++. +|++.+... + .+.+.+. .....+..++++
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~-G-----------~d~gel~-----g~~~gv~v~~dl~ 68 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQL-G-----------QDAGAFL-----GKQTGVALTDDIE 68 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTT-T-----------SBTTTTT-----TCCCSCBCBCCHH
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccc-c-----------ccHHHHh-----CCCCCceecCCHH
Confidence 457999999 799999999988865 677775 688753210 0 0001000 000123345555
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
+.+.++|+||++.+ ++...+...... ..+.-+++.|++++..
T Consensus 69 ~ll~~~DVVIDfT~--p~a~~~~~~~al---~~G~~vVigTTG~s~~ 110 (272)
T 4f3y_A 69 RVCAEADYLIDFTL--PEGTLVHLDAAL---RHDVKLVIGTTGFSEP 110 (272)
T ss_dssp HHHHHCSEEEECSC--HHHHHHHHHHHH---HHTCEEEECCCCCCHH
T ss_pred HHhcCCCEEEEcCC--HHHHHHHHHHHH---HcCCCEEEECCCCCHH
Confidence 44678999999986 554444444333 3344444555555443
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.011 Score=61.44 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=34.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC---hHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~e~~~~~~ 348 (733)
+++.|+|+|-+|.+++..|++.|. +|++++|+ .++++...
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la 192 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFA 192 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHH
Confidence 579999999999999999999998 89999999 66555543
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.1 Score=58.12 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=100.5
Q ss_pred CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCC
Q 004726 21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK 98 (733)
Q Consensus 21 ~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 98 (733)
|+|.. -.++++-.....+.++.+++ ..+-+|.|.-. +.|..|.+-+.. ........++ ..+....
T Consensus 337 ~~~~~~~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDt-pG~~~G~~~E~~----------g~~~~~A~~~-~a~~~~~ 403 (527)
T 1vrg_A 337 NQPSVLAGVLDIDSSDKAARFIRFLDA-FNIPILTFVDT-PGYLPGVAQEHG----------GIIRHGAKLL-YAYSEAT 403 (527)
T ss_dssp ECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHHHCC
T ss_pred EcCcccCCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecC-CCCcCchhhHHh----------HHHHHHHHHH-HHHhcCC
Confidence 45532 67999999999999988864 45666776432 234444332211 1222333555 5678899
Q ss_pred CcEEEEeCCcccchhhHHhhh----cCEEEEeCCceEeCccccCCCCCChhhhhhhcccc-----CHHHHHH-HH--HcC
Q 004726 99 KPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-----GLSKAIE-MM--LLS 166 (733)
Q Consensus 99 kp~Iaav~G~a~GgG~~lala----cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~-----G~~~a~~-l~--ltG 166 (733)
.|+|++|-|.|.|||..-... +|+++|.++++++ .++.-|.+..+-+.- .+...++ +. +.-
T Consensus 404 vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~ 476 (527)
T 1vrg_A 404 VPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQ 476 (527)
T ss_dssp SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHH
Confidence 999999999999887644433 8998888887776 444444444443321 1111111 22 112
Q ss_pred CCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 167 ~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
..-++..+.+.|+||.|+++.++........+.+.
T Consensus 477 ~~~~p~~~~~~g~iD~II~p~~tR~~l~~~L~~l~ 511 (527)
T 1vrg_A 477 QFANPYIAASRGYVDMVIDPRETRKYIMRALEVCE 511 (527)
T ss_dssp HTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred hhCCHHHHHHcCCCCeeeCHHHHHHHHHHHHHHHh
Confidence 23677889999999999999887665555555443
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.01 Score=63.21 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=48.1
Q ss_pred CcceEEEEcCCcCcHH-HHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
++.||+|||+|.||.. .+..+.+. +++|+ ++|++++++.+ ....+...+++
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~~ 58 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------------------DFPDAEVVHELE 58 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------------------HCTTSEEESSTH
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------------------hCCCCceECCHH
Confidence 3458999999999997 66666654 67765 78999865221 01123445566
Q ss_pred cccC--CCCEEEEeccCChHH
Q 004726 383 SEFK--DVDMVIEAVIESVPL 401 (733)
Q Consensus 383 ~~l~--~aDlVI~avpe~~~~ 401 (733)
+.++ ++|+|++|+|.....
T Consensus 59 ~ll~~~~vD~V~i~tp~~~H~ 79 (358)
T 3gdo_A 59 EITNDPAIELVIVTTPSGLHY 79 (358)
T ss_dssp HHHTCTTCCEEEECSCTTTHH
T ss_pred HHhcCCCCCEEEEcCCcHHHH
Confidence 4444 799999999976654
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0071 Score=61.82 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=28.9
Q ss_pred cceEEEEcC-CcCcHHHHHHHHH-CCCeeE-EEeCChH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSE 342 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~e 342 (733)
..||+|+|+ |.||..++..+.+ .|++|+ ++|++++
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~ 42 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS 42 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCch
Confidence 358999998 9999999998774 578887 7788764
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.009 Score=61.20 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=53.6
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+++.|||.|. +|.++|..|++.|.+|+++++....++. .+.+++
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~~ 210 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLRT 210 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhcc
Confidence 5799999876 7999999999999999999985433220 023578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.+++-..-++. ..+++++++++..+
T Consensus 211 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi 240 (300)
T 4a26_A 211 ADIVIAAMGQPGYVKG-------EWIKEGAAVVDVGT 240 (300)
T ss_dssp CSEEEECSCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred CCEEEECCCCCCCCcH-------HhcCCCcEEEEEec
Confidence 9999999984222222 34688988876443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.018 Score=63.56 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=36.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
+||-|+|+|.+|..+|..|...|++|+++|.|++.++++.
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~ 43 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQ 43 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 4799999999999999999999999999999999987753
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0077 Score=66.51 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=36.0
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHC-CCeeEEEeCChHHHHHH
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~ 347 (733)
++++|.|+|+|.+|++++..|++. |++|+++||++++++..
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l 63 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL 63 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence 357899999999999999999998 78999999999876653
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.012 Score=62.84 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=47.8
Q ss_pred CcceEEEEcCCcCcHH-HHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 307 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
++.||+|||+|.||.. .+..+.+. +++|+ ++|+++++++.. .......+++
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-------------------------~~~~~~~~~~~ 60 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRD-------------------------LPDVTVIASPE 60 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHH-------------------------CTTSEEESCHH
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-------------------------CCCCcEECCHH
Confidence 3458999999999997 66666665 77875 889998764310 1123345565
Q ss_pred cccC--CCCEEEEeccCChHH
Q 004726 383 SEFK--DVDMVIEAVIESVPL 401 (733)
Q Consensus 383 ~~l~--~aDlVI~avpe~~~~ 401 (733)
+.++ ++|+|++|+|.....
T Consensus 61 ~ll~~~~~D~V~i~tp~~~H~ 81 (364)
T 3e82_A 61 AAVQHPDVDLVVIASPNATHA 81 (364)
T ss_dssp HHHTCTTCSEEEECSCGGGHH
T ss_pred HHhcCCCCCEEEEeCChHHHH
Confidence 3444 799999999965553
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0084 Score=62.87 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=56.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
.||+|||+|.||..++..+.+. +.++ .++|++++. +. . . .+..++++ +.+
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~------------~------------~-gv~~~~d~~~ll 56 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT------------K------------T-PVFDVADVDKHA 56 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS------------S------------S-CEEEGGGGGGTT
T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh------------c------------C-CCceeCCHHHHh
Confidence 4799999999999999999877 5665 588988654 10 0 0 12334455 334
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHH
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIV 431 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l 431 (733)
.++|+||+|+|..... +.+...+..+. ++++...+..+.++
T Consensus 57 ~~~DvViiatp~~~h~-----~~~~~al~aG~~Vv~ekp~~~~~~~~ 98 (320)
T 1f06_A 57 DDVDVLFLCMGSATDI-----PEQAPKFAQFACTVDTYDNHRDIPRH 98 (320)
T ss_dssp TTCSEEEECSCTTTHH-----HHHHHHHTTTSEEECCCCCGGGHHHH
T ss_pred cCCCEEEEcCCcHHHH-----HHHHHHHHCCCEEEECCCCcCCHHHH
Confidence 7899999999865432 22223334454 44433334445444
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0064 Score=61.49 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=52.9
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+++.|||.| .+|.++|..|.+.|.+|++++++...++ +.+++
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~-------------------------------------~~~~~ 193 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG-------------------------------------SMTRS 193 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHH
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------------------------Hhhcc
Confidence 479999997 5899999999999999999987533222 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.+++-..-++. ..+++++++++..+
T Consensus 194 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi 223 (276)
T 3ngx_A 194 SKIVVVAVGRPGFLNR-------EMVTPGSVVIDVGI 223 (276)
T ss_dssp SSEEEECSSCTTCBCG-------GGCCTTCEEEECCC
T ss_pred CCEEEECCCCCccccH-------hhccCCcEEEEecc
Confidence 9999999974222222 34688888876443
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.011 Score=64.39 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=49.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHC---------CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc
Q 004726 310 KVAVIGGGLMGSGIATAHILN---------NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 379 (733)
||||||+|.||...+..+.+. +.+|+ ++|++++++++..+. .+.....
T Consensus 28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~----------------------~~~~~~y 85 (412)
T 4gqa_A 28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAK----------------------LGAEKAY 85 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHH----------------------HTCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHH----------------------cCCCeEE
Confidence 799999999999988888764 34555 779999987765332 1222344
Q ss_pred cCc-ccc--CCCCEEEEeccCChHH
Q 004726 380 LDY-SEF--KDVDMVIEAVIESVPL 401 (733)
Q Consensus 380 ~~~-~~l--~~aDlVI~avpe~~~~ 401 (733)
+|+ +.+ .+.|+|+.|+|.....
T Consensus 86 ~d~~~ll~~~~vD~V~I~tp~~~H~ 110 (412)
T 4gqa_A 86 GDWRELVNDPQVDVVDITSPNHLHY 110 (412)
T ss_dssp SSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred CCHHHHhcCCCCCEEEECCCcHHHH
Confidence 565 334 4689999999965554
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0048 Score=60.65 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=33.8
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
||.|.|+ |.+|+.++..|++.|++|++++|+++.++.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 39 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD 39 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence 6999998 999999999999999999999999887553
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.02 Score=62.88 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=51.6
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHC-CCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc----
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---- 380 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~---- 380 (733)
+..||+|||+|.||...+..+.+. |++| .++|+++++++...+.+. +.|. ......+
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~~ 81 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGND 81 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSSTT
T ss_pred CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCCC
Confidence 345899999999999999988875 6776 488999998776543211 1110 0122233
Q ss_pred Cc-cccC--CCCEEEEeccCChH
Q 004726 381 DY-SEFK--DVDMVIEAVIESVP 400 (733)
Q Consensus 381 ~~-~~l~--~aDlVI~avpe~~~ 400 (733)
++ +.++ ++|+|++|+|....
T Consensus 82 ~~~~ll~~~~vD~V~i~tp~~~h 104 (444)
T 2ixa_A 82 DYKNMLKDKNIDAVFVSSPWEWH 104 (444)
T ss_dssp THHHHTTCTTCCEEEECCCGGGH
T ss_pred CHHHHhcCCCCCEEEEcCCcHHH
Confidence 55 3444 68999999996554
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.036 Score=55.83 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999997 789998764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.021 Score=55.67 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=33.6
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
||.|+|+ |.+|+.++..|++.|++|++++|+++.++.
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 39 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ 39 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence 6999996 999999999999999999999999877553
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.014 Score=59.67 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=53.5
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||.|. +|..+|..|...|.+|++++++...+. +.+++
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 208 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK 208 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHH-------------------------------------HHhcc
Confidence 5899999995 799999999999999999985533221 35688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.+++-.--++. ..++++++|++...
T Consensus 209 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi 238 (301)
T 1a4i_A 209 GDILVVATGQPEMVKG-------EWIKPGAIVIDCGI 238 (301)
T ss_dssp CSEEEECCCCTTCBCG-------GGSCTTCEEEECCC
T ss_pred CCEEEECCCCcccCCH-------HHcCCCcEEEEccC
Confidence 9999999974222222 23678888876544
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.039 Score=60.48 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=49.8
Q ss_pred cceEEEEcC----CcCcHHHHHHHHHC--CCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 308 VRKVAVIGG----GLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 308 ~~kI~VIG~----G~mG~~iA~~l~~~--G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
..||+|||+ |.||...+..|.+. +++| .++|+++++++...+. .|. ..+...+
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~----------~~~~~~~ 79 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQR----------LKL----------SNATAFP 79 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TTC----------TTCEEES
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------CcceeeC
Confidence 358999999 99999999999886 6776 5889999887654221 010 0112345
Q ss_pred Cc-cccC--CCCEEEEeccCCh
Q 004726 381 DY-SEFK--DVDMVIEAVIESV 399 (733)
Q Consensus 381 ~~-~~l~--~aDlVI~avpe~~ 399 (733)
++ +.++ ++|+|++|+|...
T Consensus 80 ~~~~ll~~~~vD~V~i~tp~~~ 101 (438)
T 3btv_A 80 TLESFASSSTIDMIVIAIQVAS 101 (438)
T ss_dssp SHHHHHHCSSCSEEEECSCHHH
T ss_pred CHHHHhcCCCCCEEEEeCCcHH
Confidence 55 3343 6999999999443
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.031 Score=58.68 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=32.3
Q ss_pred CcceEEEEcCCcCcHH-HHHHHHHCCCeeEEEeCChH
Q 004726 307 GVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~-iA~~l~~~G~~V~~~d~~~e 342 (733)
.++||.|||.|.+|.+ +|..|++.|++|+++|.++.
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~ 39 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY 39 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 3579999999999996 99999999999999998753
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0086 Score=58.94 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=33.8
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (733)
|++|.|.|+ |.+|+.++..|++.|++|++.+|+++..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 41 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI 41 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence 578999996 9999999999999999999999998754
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.028 Score=60.54 Aligned_cols=69 Identities=14% Similarity=0.025 Sum_probs=49.4
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGGG-LMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.||+|||+| .||..++..+.+. +++|+ ++|+++++++...+.. .+...+++ +.
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~~~el 59 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY-----------------------GIPVFATLAEM 59 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH-----------------------TCCEESSHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-----------------------CCCeECCHHHH
Confidence 479999999 9999999998875 56665 7899998876543210 12334555 33
Q ss_pred cC--CCCEEEEeccCChH
Q 004726 385 FK--DVDMVIEAVIESVP 400 (733)
Q Consensus 385 l~--~aDlVI~avpe~~~ 400 (733)
++ ++|+|++|+|....
T Consensus 60 l~~~~vD~V~i~tp~~~H 77 (387)
T 3moi_A 60 MQHVQMDAVYIASPHQFH 77 (387)
T ss_dssp HHHSCCSEEEECSCGGGH
T ss_pred HcCCCCCEEEEcCCcHHH
Confidence 43 59999999996544
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.014 Score=62.25 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=48.1
Q ss_pred CCcceEEEEcCCcCcHH-HHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 306 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
+++-||+|||+|.||.. .+..+.+. +++|+ ++|++++++.+ ..+.+...+++
T Consensus 3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~ 57 (362)
T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVRSF 57 (362)
T ss_dssp CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEESCS
T ss_pred CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceECCH
Confidence 34568999999999997 67777665 77775 78998765211 01123445666
Q ss_pred -cccC--CCCEEEEeccCChHH
Q 004726 383 -SEFK--DVDMVIEAVIESVPL 401 (733)
Q Consensus 383 -~~l~--~aDlVI~avpe~~~~ 401 (733)
+.++ ++|+|++|+|.....
T Consensus 58 ~~ll~~~~vD~V~i~tp~~~H~ 79 (362)
T 3fhl_A 58 KELTEDPEIDLIVVNTPDNTHY 79 (362)
T ss_dssp HHHHTCTTCCEEEECSCGGGHH
T ss_pred HHHhcCCCCCEEEEeCChHHHH
Confidence 4444 499999999965543
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.15 Score=50.95 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=78.3
Q ss_pred ccccccC-ccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcc---cCCC-CcEEEEecCCC
Q 004726 375 MLKGVLD-YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TSSQ-DRIIGAHFFSP 449 (733)
Q Consensus 375 ~i~~~~~-~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~~~-~~~ig~h~~~p 449 (733)
.+..++| .++++++|++|.-.|..- ....+.+++.+++++++|| +||-|+++..+... +.+. ..+..+||-.-
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~-~t~~Iakkii~~lpEgAII-~nTCTipp~~ly~~le~l~R~DvgIsS~HPaaV 205 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGN-KQPDIIKKFADAIPEGAIV-THACTIPTTKFAKIFKDLGREDLNITSYHPGCV 205 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCT-THHHHHHHHGGGSCTTCEE-EECSSSCHHHHHHHHHHTTCTTSEEEECBCSSC
T ss_pred CcEeecchHHHhcCCCEEEEecCCCC-CcHHHHHHHHhhCcCCCEE-ecccCCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 3444444 489999999999999533 2347788999999999987 46777777655443 3332 45777887554
Q ss_pred CCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 450 ~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
|....- ........++|.++++.+|.+..|+.++++.
T Consensus 206 Pgt~Gq-~~~g~~yAtEEqIeklveLaksa~k~ay~vP 242 (358)
T 2b0j_A 206 PEMKGQ-VYIAEGYASEEAVNKLYEIGKIARGKAFKMP 242 (358)
T ss_dssp TTTCCC-EEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred CCCCCc-cccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence 433222 2334445689999999999999999999883
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.031 Score=57.53 Aligned_cols=41 Identities=20% Similarity=0.116 Sum_probs=36.3
Q ss_pred ceEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|+| +|.+|.+++..|++.|.+|++++|++++++...+
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 4789999 8999999999999999999999999887766544
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.018 Score=58.48 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=53.2
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+++.|||.|. +|.++|..|++.|.+|++.++....++ +.+++
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~-------------------------------------~~~~~ 203 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ 203 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhhc
Confidence 5799999876 699999999999999999987543222 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.+++-..-++. ..++++++|++..+
T Consensus 204 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi 233 (285)
T 3p2o_A 204 ADLIIVAAGCVNLLRS-------DMVKEGVIVVDVGI 233 (285)
T ss_dssp CSEEEECSSCTTCBCG-------GGSCTTEEEEECCC
T ss_pred CCEEEECCCCCCcCCH-------HHcCCCeEEEEecc
Confidence 9999999973222222 34688888876443
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.075 Score=55.98 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=59.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCC-CHHHH-HHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKA-NNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~-~~~~~-~~~~~~i~~~~~~-~ 383 (733)
.||||+|+|.+|..+++.+... +++|+ +.|.+++......+. +...-.|.. ..... .-.-+.+....+. +
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~-----dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~ 77 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVE-----KGYKLFVAIPDNERVKLFEDAGIPVEGTILD 77 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHH-----TTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-----cCCccccccCCCceeecccCCeEEECCchHH
Confidence 5899999999999999999876 57766 446665554433210 000011222 11211 1111123333333 4
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
.+.++|+|++|.|..... +... ..+++.++.++++.+.
T Consensus 78 ~~~~vDiV~eatg~~~s~--~~a~--~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 78 IIEDADIVVDGAPKKIGK--QNLE--NIYKPHKVKAILQGGE 115 (343)
T ss_dssp TGGGCSEEEECCCTTHHH--HHHH--HTTTTTTCEEEECTTS
T ss_pred hccCCCEEEECCCccccH--HHHH--HHHHHCCCEEEECCCc
Confidence 457999999999854432 2211 3566777766665443
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.018 Score=59.80 Aligned_cols=91 Identities=18% Similarity=0.062 Sum_probs=57.7
Q ss_pred ceEEEEcCCcC-cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-----c--c
Q 004726 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-----V--L 380 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-----~--~ 380 (733)
++|.|||.|.| |..+|..|+..|.+|+++|++..++.. +...-. . ..... + .
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~--------------ra~~la----~--~~~~~t~~~~t~~~ 237 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT--------------RGESLK----L--NKHHVEDLGEYSED 237 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE--------------SCCCSS----C--CCCEEEEEEECCHH
T ss_pred CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh--------------HHHHHh----h--hcccccccccccHh
Confidence 58999999976 999999999999999999998432110 000000 0 00111 1 2
Q ss_pred Cc-cccCCCCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 381 DY-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 381 ~~-~~l~~aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
++ +.+++||+||.|++-.-- +.. ..+++++++++.++.-
T Consensus 238 ~L~e~l~~ADIVIsAtg~p~~vI~~-------e~vk~GavVIDVgi~r 278 (320)
T 1edz_A 238 LLKKCSLDSDVVITGVPSENYKFPT-------EYIKEGAVCINFACTK 278 (320)
T ss_dssp HHHHHHHHCSEEEECCCCTTCCBCT-------TTSCTTEEEEECSSSC
T ss_pred HHHHHhccCCEEEECCCCCcceeCH-------HHcCCCeEEEEcCCCc
Confidence 33 567899999999973221 222 2357888887766543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0089 Score=59.48 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCCcceEEEEcC-CcCcHHHHHHHHHCC-CeeEEEeCChHHHH
Q 004726 305 PRGVRKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYLL 345 (733)
Q Consensus 305 ~~~~~kI~VIG~-G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~ 345 (733)
++.|++|.|.|+ |.+|..++..|++.| ++|++++|+++.++
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~ 62 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIH 62 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhc
Confidence 455788999995 999999999999999 89999999987643
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.17 Score=56.26 Aligned_cols=162 Identities=15% Similarity=0.073 Sum_probs=101.4
Q ss_pred eCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcC
Q 004726 20 LINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC 97 (733)
Q Consensus 20 l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 97 (733)
=|+|.. -.++++-.+...+.++.+++ ..+-+|.|.-. +.|..|.+-++. ...+...+++ ..+.+.
T Consensus 332 an~~~~~~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDt-pGf~~G~~~E~~----------Gi~~~~A~~l-~a~a~~ 398 (523)
T 1on3_A 332 ANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV-PGFLPGVQQEYG----------GIIRHGAKML-YAYSEA 398 (523)
T ss_dssp EECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHHHC
T ss_pred EecCCccCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeC-CCcCcchHHHHh----------hHHHHHHHHH-HHHhcC
Confidence 355542 57999999999999988864 35666766433 335555443221 1223344555 568889
Q ss_pred CCcEEEEeCCcccchhhHHhhh----cCEEEEeCCceEeCccccCCCCCChhhhhhhcccc-----CHHHHHH-HHH--c
Q 004726 98 KKPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-----GLSKAIE-MML--L 165 (733)
Q Consensus 98 ~kp~Iaav~G~a~GgG~~lala----cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~-----G~~~a~~-l~l--t 165 (733)
..|+|+.|-|.+.|||..-... +|+++|.++++++ .++.-|.+..+-+.- -....++ +.- .
T Consensus 399 ~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~ 471 (523)
T 1on3_A 399 TVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQ 471 (523)
T ss_dssp CSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHH
Confidence 9999999999999888754444 8888887777766 444444444443321 1111111 221 1
Q ss_pred CCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
-..-++..+.+.|+||.|+++.++........+.+.
T Consensus 472 ~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~ 507 (523)
T 1on3_A 472 NAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYA 507 (523)
T ss_dssp HHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGG
T ss_pred HhhCCHHHHHhcCCCCEeeCHHHHHHHHHHHHHHHh
Confidence 112567889999999999999887665555554443
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.018 Score=58.52 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=52.2
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+++.|||.|. +|.++|..|...|.+|++.++....++ +.+++
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 204 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK 204 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------Hhccc
Confidence 5799999876 799999999999999999986432221 34688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.+++-..-++. ..+++++++++..
T Consensus 205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvg 233 (285)
T 3l07_A 205 ADILIVAVGKPNFITA-------DMVKEGAVVIDVG 233 (285)
T ss_dssp CSEEEECCCCTTCBCG-------GGSCTTCEEEECC
T ss_pred CCEEEECCCCCCCCCH-------HHcCCCcEEEEec
Confidence 9999999973222222 3468888877644
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.024 Score=56.42 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=35.9
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
.++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 45 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQEL 45 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 356777776 889999999999999999999999988776544
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.057 Score=56.63 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=30.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCCh
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~ 341 (733)
+||.|+|+ |.+|+.++..|+..|+ +|+++|+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~ 45 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ 45 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence 47999997 9999999999999996 899999975
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.012 Score=59.95 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=52.5
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||.|. .|..+|..|+..|.+|+++++....+. +.+++
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 202 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN 202 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999996 599999999999999999986653332 34567
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.+++..--++. ..++++++|++..
T Consensus 203 ADIVI~Avg~p~lI~~-------~~vk~GavVIDVg 231 (288)
T 1b0a_A 203 ADLLIVAVGKPGFIPG-------DWIKEGAIVIDVG 231 (288)
T ss_dssp CSEEEECSCCTTCBCT-------TTSCTTCEEEECC
T ss_pred CCEEEECCCCcCcCCH-------HHcCCCcEEEEcc
Confidence 9999999973221222 2357888887644
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0063 Score=59.76 Aligned_cols=78 Identities=22% Similarity=0.229 Sum_probs=46.4
Q ss_pred ceEEEEcCCcCcHHHHHH--HHHCCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSGIATA--HILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~--l~~~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.+|+|||+|.+|..++.. +...|++++ ++|.++++..+.. .| . .+...+++ +.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i------------~g----------v-~V~~~~dl~el 142 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEV------------GG----------V-PVYNLDDLEQH 142 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEE------------TT----------E-EEEEGGGHHHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHh------------cC----------C-eeechhhHHHH
Confidence 469999999999999994 445578765 7799987643210 00 0 11223344 34
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEK 411 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~ 411 (733)
+++.|.||+|+| ....+++...+.+
T Consensus 143 i~~~D~ViIAvP--s~~~~ei~~~l~~ 167 (215)
T 2vt3_A 143 VKDESVAILTVP--AVAAQSITDRLVA 167 (215)
T ss_dssp CSSCCEEEECSC--HHHHHHHHHHHHH
T ss_pred HHhCCEEEEecC--chhHHHHHHHHHH
Confidence 444599999999 4444566665543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.017 Score=59.05 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=35.1
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
||++| |+ +-+|.++|..|++.|.+|++.|++++.+++..+.
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~ 72 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAE 72 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 67777 44 7799999999999999999999999988876543
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.033 Score=58.80 Aligned_cols=71 Identities=11% Similarity=-0.066 Sum_probs=50.4
Q ss_pred cceEEEEcCC-cCcHHHHHHHHHC--CCee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 308 VRKVAVIGGG-LMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 308 ~~kI~VIG~G-~mG~~iA~~l~~~--G~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
.-||+|||+| .||...+..+.+. +.+| .++|+++++++...+. .+.....+++
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~ 75 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYE 75 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHH
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH----------------------hCCCcccCCHH
Confidence 3489999999 8999999999876 4666 5889999887664321 1122345555
Q ss_pred ccc--CCCCEEEEeccCChH
Q 004726 383 SEF--KDVDMVIEAVIESVP 400 (733)
Q Consensus 383 ~~l--~~aDlVI~avpe~~~ 400 (733)
+.+ .++|+|++|+|....
T Consensus 76 ~ll~~~~vD~V~i~tp~~~H 95 (340)
T 1zh8_A 76 ELLESGLVDAVDLTLPVELN 95 (340)
T ss_dssp HHHHSSCCSEEEECCCGGGH
T ss_pred HHhcCCCCCEEEEeCCchHH
Confidence 334 368999999995544
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.36 Score=54.07 Aligned_cols=160 Identities=13% Similarity=0.033 Sum_probs=90.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.-++++...+.+..+++.+.+. .+-+|.|.-.|. +.+.+-.+... ....+.+...+. ..+.....|+|++
T Consensus 119 gGS~g~~~~~Ki~Ra~e~A~~~-~lPvI~l~dSgG-----Arl~~qe~~~~--~l~~~g~if~~~--~~ls~~~iP~Isv 188 (588)
T 3gf3_A 119 AGAWVPGQAENLIRCSDAAKMM-HLPLIYLLNCSG-----VEFPNQDKVYP--NRRGGGTPFFRN--SELNQLGIPVIVG 188 (588)
T ss_dssp GGCBCTTHHHHHHHHHHHHHHH-TCCEEEEECCCC-----BCGGGHHHHSS--STTSTTHHHHHH--HHHHHTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cCccccccccc--chhhHHHHHHHH--HHHhcCCCCEEEE
Confidence 4788888999999999988765 456777765443 33321111100 011122222222 2355678999999
Q ss_pred eCCcccchhhHHhhhcCEEEEeCCceEeCcccc--CCCCCChhhhhhhccc---cCHHHHHHHHHcCCCCCHHHHH--Hc
Q 004726 105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELT--LGVIPGFGGTQRLPRL---VGLSKAIEMMLLSKSITSEEGW--KL 177 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~--~Gl~P~~g~~~~l~r~---~G~~~a~~l~ltG~~i~a~eA~--~~ 177 (733)
|.|.|.|||...++++|++++.+++.+++.... -|+-|.+ . ..+.- +......+-..+.+.+...+.. ..
T Consensus 189 v~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g--~-~~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~~~s 265 (588)
T 3gf3_A 189 IYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG--Y-IDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDET 265 (588)
T ss_dssp ECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTCCCTTBHHHHTTTS
T ss_pred EeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc--c-ccccchhhhhhhhccccccChhhccchhhhcccc
Confidence 999999998877888899999999988874332 1211110 0 01110 0001111111356666666666 58
Q ss_pred CCccEEcCcch-HHHHHHHHH
Q 004726 178 GLIDAVVTSEE-LLKVSRLWA 197 (733)
Q Consensus 178 Glv~~vv~~~~-l~~~a~~~a 197 (733)
|++|.++++++ ..+.++++.
T Consensus 266 Gv~d~~a~de~~al~~~r~~l 286 (588)
T 3gf3_A 266 GFFREVYQNDLGVIDGIKKYI 286 (588)
T ss_dssp CCSCEEESSHHHHHHHHHHHH
T ss_pred ccceEEeCCHHHHHHHHHHHH
Confidence 99999997653 344444443
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.096 Score=58.26 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=32.3
Q ss_pred CCCcceEEEEcCCcCcHH-HHHHHHHCCCeeEEEeCChH
Q 004726 305 PRGVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 305 ~~~~~kI~VIG~G~mG~~-iA~~l~~~G~~V~~~d~~~e 342 (733)
+..+++|.|||.|..|.+ +|..|.+.|++|+++|..+.
T Consensus 19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~ 57 (494)
T 4hv4_A 19 MRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN 57 (494)
T ss_dssp ---CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred hccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence 345789999999999996 99999999999999998754
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.031 Score=60.39 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=50.8
Q ss_pred CcceEEEEcCCc---CcHHHHHHHHHCC-CeeE--EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 307 GVRKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 307 ~~~kI~VIG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
+.-||+|||+|. ||...+..+...+ ++|+ ++|+++++++...+. -| +. .....+
T Consensus 11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g-~~---------~~~~~~ 70 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ----------LG-VD---------SERCYA 70 (398)
T ss_dssp SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH----------TT-CC---------GGGBCS
T ss_pred CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH----------hC-CC---------cceeeC
Confidence 345899999999 9999998887765 6776 579999987664321 11 00 013345
Q ss_pred Cc-cccC-------CCCEEEEeccCChHH
Q 004726 381 DY-SEFK-------DVDMVIEAVIESVPL 401 (733)
Q Consensus 381 ~~-~~l~-------~aDlVI~avpe~~~~ 401 (733)
++ +.++ +.|+|+.|+|.....
T Consensus 71 ~~~~ll~~~~~~~~~vD~V~i~tp~~~H~ 99 (398)
T 3dty_A 71 DYLSMFEQEARRADGIQAVSIATPNGTHY 99 (398)
T ss_dssp SHHHHHHHHTTCTTCCSEEEEESCGGGHH
T ss_pred CHHHHHhcccccCCCCCEEEECCCcHHHH
Confidence 55 3333 499999999966553
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.12 Score=58.14 Aligned_cols=157 Identities=11% Similarity=0.121 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-.++++-.....+.++.+++ .++-+|.|.-. +.|..|.+-++ .........++ ..+..+..|+|+.|
T Consensus 385 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt-pGf~~G~~~E~----------~Gi~~~gA~~~-~a~a~a~vP~itvI 451 (587)
T 1pix_A 385 GKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TGIDVGNDAEK----------AELLGLGQSLI-YSIQTSHIPQFEIT 451 (587)
T ss_dssp TEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHHH----------TTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred CCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC-CCCCCcHHHHH----------HHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 57999999999999987764 45677777543 34655554221 12233444666 67899999999999
Q ss_pred CCcccchhhHHhhh-----c--CEEEEeCCceEeCccccCCCCCChhhhhhhccc-cCH---------HHH---HHHH--
Q 004726 106 EGLALGGGLELAMG-----C--HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL---------SKA---IEMM-- 163 (733)
Q Consensus 106 ~G~a~GgG~~lala-----c--D~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~-~G~---------~~a---~~l~-- 163 (733)
-|.+.|||. ++++ + |+++|.++++++ .++.-|.+..+-+. .-. ..+ .++.
T Consensus 452 ~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 523 (587)
T 1pix_A 452 LRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA 523 (587)
T ss_dssp CSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cCCCccHHH-HHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHH
Confidence 999998874 4554 4 998888888777 44434444333222 110 000 1111
Q ss_pred HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccC
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~ 204 (733)
+. +..++..|.+.|+||.|+++.+.........+.+...+
T Consensus 524 y~-~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~ 563 (587)
T 1pix_A 524 FY-TKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP 563 (587)
T ss_dssp HH-HTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred HH-HhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCC
Confidence 11 14789999999999999999887666655555554443
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.027 Score=56.85 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=52.7
Q ss_pred ceEEEE--cCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHH--hHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRG--LVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~--~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
.|+++| |.+-+|.++|..|++.|.+|++.|++++.+++..+.+.+.-.+ .+....-++++.+.....+. +.
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~~ 83 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLD-----AE 83 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH-----HT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH-----HH
Confidence 377888 5588999999999999999999999999888776554321000 01122233444444333322 33
Q ss_pred cCCCCEEEEec
Q 004726 385 FKDVDMVIEAV 395 (733)
Q Consensus 385 l~~aDlVI~av 395 (733)
+...|++|.+.
T Consensus 84 ~G~iDiLVNNA 94 (255)
T 4g81_D 84 GIHVDILINNA 94 (255)
T ss_dssp TCCCCEEEECC
T ss_pred CCCCcEEEECC
Confidence 55677777765
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.037 Score=60.19 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=49.1
Q ss_pred ceEEEEcCCc---CcHHHHHHHHHCC-CeeE--EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
-||+|||+|. ||...+..+...+ ++|+ ++|++++++++..++. | + ......+++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~----------g-~---------~~~~~~~~~ 97 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGREL----------G-L---------DPSRVYSDF 97 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHH----------T-C---------CGGGBCSCH
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHc----------C-C---------CcccccCCH
Confidence 4899999999 9999888887765 6765 6799999877643321 1 0 001234555
Q ss_pred -cccC-------CCCEEEEeccCChHH
Q 004726 383 -SEFK-------DVDMVIEAVIESVPL 401 (733)
Q Consensus 383 -~~l~-------~aDlVI~avpe~~~~ 401 (733)
+.++ +.|+|++|+|.....
T Consensus 98 ~~ll~~~~~~~~~vD~V~I~tp~~~H~ 124 (417)
T 3v5n_A 98 KEMAIREAKLKNGIEAVAIVTPNHVHY 124 (417)
T ss_dssp HHHHHHHHHCTTCCSEEEECSCTTSHH
T ss_pred HHHHhcccccCCCCcEEEECCCcHHHH
Confidence 3333 489999999976653
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.07 Score=59.12 Aligned_cols=73 Identities=22% Similarity=0.149 Sum_probs=50.3
Q ss_pred CcceEEEEcC----CcCcHHHHHHHHHC--CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc
Q 004726 307 GVRKVAVIGG----GLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (733)
Q Consensus 307 ~~~kI~VIG~----G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 379 (733)
+.-||+|||+ |.||...+..|.+. +++|+ ++|+++++++...+. .| + ..+...
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~----------~g-~---------~~~~~~ 97 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQ-L---------KHATGF 97 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TT-C---------TTCEEE
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cC-C---------Ccceee
Confidence 3458999999 99999999999886 67765 889999887664321 01 0 011234
Q ss_pred cCc-ccc--CCCCEEEEeccCCh
Q 004726 380 LDY-SEF--KDVDMVIEAVIESV 399 (733)
Q Consensus 380 ~~~-~~l--~~aDlVI~avpe~~ 399 (733)
+++ +.+ .++|+|++|+|...
T Consensus 98 ~d~~ell~~~~vD~V~I~tp~~~ 120 (479)
T 2nvw_A 98 DSLESFAQYKDIDMIVVSVKVPE 120 (479)
T ss_dssp SCHHHHHHCTTCSEEEECSCHHH
T ss_pred CCHHHHhcCCCCCEEEEcCCcHH
Confidence 555 334 37999999999443
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.2 Score=55.81 Aligned_cols=160 Identities=15% Similarity=0.130 Sum_probs=98.5
Q ss_pred eCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcC
Q 004726 20 LINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC 97 (733)
Q Consensus 20 l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 97 (733)
=|+|.. -.++++-.+...+.++.+++. .+-+|.|--. +.|..|.+-++. ........++ ..+...
T Consensus 353 an~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~Gf~~G~~~E~~----------Gi~~~ga~~l-~a~~~~ 419 (548)
T 2bzr_A 353 ANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEYN----------GIIRRGAKLL-YAYGEA 419 (548)
T ss_dssp EECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHHHC
T ss_pred EECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-cCCCCChHHHHh----------hHHHHHHHHH-HHHhCC
Confidence 345532 689999999999999888654 5666766432 235555443221 1222333555 568889
Q ss_pred CCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeCccccCCCCCChhhhhhhccc-cCH--------HHHHH-HH
Q 004726 98 KKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL--------SKAIE-MM 163 (733)
Q Consensus 98 ~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~-~G~--------~~a~~-l~ 163 (733)
..|+|++|-|.|.|||..... .+|+++|.++++++ .++.-|.+..+-+. +-. ...++ +.
T Consensus 420 ~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~-------Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~ 492 (548)
T 2bzr_A 420 TVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA-------VMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQ 492 (548)
T ss_dssp CSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTCCC----------CHHHHHHHH
T ss_pred CCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEE-------ecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHH
Confidence 999999999999988875443 48999888888776 44334444444332 111 11111 21
Q ss_pred H--cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHH
Q 004726 164 L--LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD 199 (733)
Q Consensus 164 l--tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 199 (733)
- .-..-++..+.+.|+||.|+++.+.........+.
T Consensus 493 ~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~ 530 (548)
T 2bzr_A 493 QEYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRL 530 (548)
T ss_dssp HHHHHHHSBSHHHHHTTSSSEECCGGGHHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHhcCCCceeeCHHHHHHHHHHHHHH
Confidence 1 11123557799999999999988776554444433
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.021 Score=58.03 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=52.2
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+++.|||.|. .|.++|..|++.|.+|++..+....++ +.+++
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------------------------~~~~~ 204 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------------------------DHVSR 204 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHT
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------------------------HHhcc
Confidence 4799999865 799999999999999999986432221 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.+++-..-++. ..++++++|++..+
T Consensus 205 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvgi 234 (286)
T 4a5o_A 205 ADLVVVAAGKPGLVKG-------EWIKEGAIVIDVGI 234 (286)
T ss_dssp CSEEEECCCCTTCBCG-------GGSCTTCEEEECCS
T ss_pred CCEEEECCCCCCCCCH-------HHcCCCeEEEEecc
Confidence 9999999973222222 34688888776443
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.024 Score=57.50 Aligned_cols=71 Identities=23% Similarity=0.231 Sum_probs=52.3
Q ss_pred ceEEEEcCCcC-cHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 309 RKVAVIGGGLM-GSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
+++.|||.|.| |..+|..|.+. |.+|++.+++.+.+. +.+
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-------------------------------------~~~ 201 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-------------------------------------ALT 201 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-------------------------------------HHH
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-------------------------------------HHH
Confidence 58999999976 99999999999 899999986543222 346
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
++||+||.+++-.--++. ..+++++++++..
T Consensus 202 ~~ADIVI~Avg~p~~I~~-------~~vk~GavVIDVg 232 (281)
T 2c2x_A 202 RQADIVVAAVGVAHLLTA-------DMVRPGAAVIDVG 232 (281)
T ss_dssp TTCSEEEECSCCTTCBCG-------GGSCTTCEEEECC
T ss_pred hhCCEEEECCCCCcccCH-------HHcCCCcEEEEcc
Confidence 789999999973221222 2357888877543
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.031 Score=59.26 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=47.8
Q ss_pred ceEEEEcCCcCcHH-HHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
-||+|||+|.||.. .+..+.+. +++|+ ++|++++++++ + .......+++ +.
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~------------~~~~~~~~~~~~l 62 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------D------------WPAIPVVSDPQML 62 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------T------------CSSCCEESCHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------h------------CCCCceECCHHHH
Confidence 48999999999997 67777665 67775 88999876431 0 1123345555 33
Q ss_pred cC--CCCEEEEeccCChHH
Q 004726 385 FK--DVDMVIEAVIESVPL 401 (733)
Q Consensus 385 l~--~aDlVI~avpe~~~~ 401 (733)
+. +.|+|++|+|.....
T Consensus 63 l~~~~vD~V~i~tp~~~H~ 81 (352)
T 3kux_A 63 FNDPSIDLIVIPTPNDTHF 81 (352)
T ss_dssp HHCSSCCEEEECSCTTTHH
T ss_pred hcCCCCCEEEEeCChHHHH
Confidence 43 599999999976654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.034 Score=56.03 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=35.9
Q ss_pred eEEEE-c-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|+++| | .+-||.++|..|++.|.+|+++|++++.+++..+.+
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i 51 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQEL 51 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 66666 4 478999999999999999999999999988776554
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.18 Score=51.67 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=61.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-cCccc--c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSE--F 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--l 385 (733)
.+|..||+|..|.+........|.+|+.+|++++.++.+.+.+++. |. .++.+. .|... -
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------gl----------~~v~~v~gDa~~l~d 186 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL-------GV----------DGVNVITGDETVIDG 186 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH-------TC----------CSEEEEESCGGGGGG
T ss_pred CEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc-------CC----------CCeEEEECchhhCCC
Confidence 5899999999765433322235889999999999999987654321 11 122221 11111 2
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
...|+|+.+.. ..-+..+++++.+.++|+..++..
T Consensus 187 ~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 187 LEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp CCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence 46799997654 344668899999999987766543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.063 Score=53.04 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=36.9
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 46 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHEL 46 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 356777776 78999999999999999999999999887765443
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.053 Score=57.90 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=47.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.||+|||+| +|.--+..+.+. +++++ ++|+++++.++..+. . .+...+++ +.
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~----------------------~-gv~~~~~~~~l 63 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA----------------------F-GIPLYTSPEQI 63 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH----------------------T-TCCEESSGGGC
T ss_pred CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH----------------------h-CCCEECCHHHH
Confidence 489999999 798878777664 57766 779999887664221 1 23445566 55
Q ss_pred cCCCCEEEEeccCCh
Q 004726 385 FKDVDMVIEAVIESV 399 (733)
Q Consensus 385 l~~aDlVI~avpe~~ 399 (733)
+++.|+|+.++|...
T Consensus 64 ~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 64 TGMPDIACIVVRSTV 78 (372)
T ss_dssp CSCCSEEEECCC--C
T ss_pred hcCCCEEEEECCCcc
Confidence 788999999998654
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.28 Score=54.39 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=98.0
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
|.=|+|.. -.++++-.+...+.++.+++. ++-+|.|.-.+ .|-.|.+-++ ....+...+++ .++.
T Consensus 342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDtp-Gf~~G~~~E~----------~Gi~~~gAk~l-~a~a 408 (531)
T 3n6r_B 342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDVP-GFLPGTSQEY----------GGVIKHGAKLL-YAYG 408 (531)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-SBCCSHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCCC-CCCCCHHHHH----------hhHHHHHHHHH-HHHH
Confidence 33456643 689999999999998877654 56677775332 3444443221 11233344566 5788
Q ss_pred cCCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeCccccCCCCCChhhhhhhcc-ccC---HHHHHHHHHcCC
Q 004726 96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR-LVG---LSKAIEMMLLSK 167 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r-~~G---~~~a~~l~ltG~ 167 (733)
.+..|+|+.|-|.+.|||..-.. .+|+++|.++++++ .++.-|.+..+-+ .+- ....+.--+.-+
T Consensus 409 ~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~-------Vm~pegaa~Il~r~~~~~~~~~~~~~~~y~~~ 481 (531)
T 3n6r_B 409 EATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVA-------VMGAKGATEIIHRGDLGDPEKIAQHTADYEER 481 (531)
T ss_dssp HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHCCTTTTSTTHHHHHHHHHHHH
T ss_pred hCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEe-------cCCHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 99999999999999988874433 28999888887776 3333343333322 121 111111111112
Q ss_pred CCCHHHHHHcCCccEEcCcchHHHHHHHH
Q 004726 168 SITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (733)
Q Consensus 168 ~i~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (733)
.-++-.|.+.|+||.|+++.+........
T Consensus 482 ~~~p~~aa~~~~vD~vIdP~~TR~~l~~~ 510 (531)
T 3n6r_B 482 FANPFVASERGFVDEVIQPRSTRKRVARA 510 (531)
T ss_dssp HSSSHHHHHHTSSSEECCGGGHHHHHHHH
T ss_pred hcCHHHHHhcCccCcccCHHHHHHHHHHH
Confidence 24566788999999999998876544433
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.066 Score=55.70 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=28.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHH--CCCee-EEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHIL--NNIYV-VLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~--~G~~V-~~~d~~~e~ 343 (733)
.||+|||+|.||..++..+.+ .+.++ .++|+++++
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~ 42 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS 42 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence 489999999999999999865 35554 577999776
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.35 Score=53.63 Aligned_cols=163 Identities=15% Similarity=0.205 Sum_probs=101.7
Q ss_pred EEEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 17 IITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 17 ~i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
-|.=|+|.. -.++++-.+...+.++.+++. ++-+|.|.-.+ .|-.|.+-++ ....+...+++ .++
T Consensus 335 gvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp-Gf~~G~~~E~----------~gi~~~~Ak~l-~a~ 401 (530)
T 3iav_A 335 GIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP-GFLPGVDQEH----------DGIIRRGAKLI-FAY 401 (530)
T ss_dssp EEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHH----------TTHHHHHHHHH-HHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC-CCCccHHHHH----------hhHHHHHHHHH-HHH
Confidence 344456643 689999999999999877754 46677775333 2666654321 12333444566 578
Q ss_pred hcCCCcEEEEeCCcccchhhHHhhh-----cCEEEEeCCceEeCccccCCCCCChhhhhhhcc-ccCH------HHHHHH
Q 004726 95 EDCKKPIVAAVEGLALGGGLELAMG-----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR-LVGL------SKAIEM 162 (733)
Q Consensus 95 ~~~~kp~Iaav~G~a~GgG~~lala-----cD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r-~~G~------~~a~~l 162 (733)
.....|+|+.|-|.+.|||. ++++ +|+++|.++++++. ++.-|.+..+-+ .+-. ..-.++
T Consensus 402 a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~~~~~~~ 473 (530)
T 3iav_A 402 AEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRARL 473 (530)
T ss_dssp HHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCHHHHHHH
T ss_pred HhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHHHHHHHH
Confidence 89999999999999998766 4444 79998888887763 333343333322 1110 111111
Q ss_pred H--HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHH
Q 004726 163 M--LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI 200 (733)
Q Consensus 163 ~--ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~ 200 (733)
. +.-+.-++-.|.+.|+||.|+++.+.........+.+
T Consensus 474 ~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~~~l~~~ 513 (530)
T 3iav_A 474 IQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQL 513 (530)
T ss_dssp HHHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHH
Confidence 1 1112246778889999999999988766544444333
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.042 Score=56.63 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=31.5
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
+++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 457999997 9999999999999999999999986
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.075 Score=53.58 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=35.2
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 50 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARS 50 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 45667776 8999999999999999999999999877665443
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.074 Score=53.33 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=35.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 56 (252)
T 3f1l_A 13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI 56 (252)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 35666666 88999999999999999999999999887765544
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.055 Score=56.20 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=31.5
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
+++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 467999996 9999999999999999999999986
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.042 Score=54.99 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=34.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 52 (254)
T 2wsb_A 12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAA 52 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46777776 99999999999999999999999988766543
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.054 Score=47.96 Aligned_cols=81 Identities=9% Similarity=-0.017 Sum_probs=58.2
Q ss_pred cceEEEEcC----CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcc
Q 004726 308 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (733)
Q Consensus 308 ~~kI~VIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (733)
.++|+|||+ +..|..+...|.+.|++|+-++...+.+ .......+++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~ 54 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----------------------------LGKTIINERP 54 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----------------------------TTEECBCSCC
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----------------------------CCeeccCChH
Confidence 368999998 5679999999999999999988764321 1234455566
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
++.+.|+++.++| .+....+++++.+.=. ..++.
T Consensus 55 dlp~vDlavi~~p--~~~v~~~v~e~~~~g~-k~v~~ 88 (122)
T 3ff4_A 55 VIEGVDTVTLYIN--PQNQLSEYNYILSLKP-KRVIF 88 (122)
T ss_dssp CCTTCCEEEECSC--HHHHGGGHHHHHHHCC-SEEEE
T ss_pred HCCCCCEEEEEeC--HHHHHHHHHHHHhcCC-CEEEE
Confidence 6655999999999 7777777777665432 34443
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.071 Score=53.70 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=34.7
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAAS 49 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45777776 899999999999999999999999987766543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.13 Score=49.99 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=32.1
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (733)
||.|.|+ |.+|..++..|++.|++|++.+|+++.+
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~ 37 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV 37 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence 7999984 9999999999999999999999998754
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.14 Score=56.32 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=32.2
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
-+||.|||+|..|.+.|..|++.|++|+++|.++.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~ 43 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF 43 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 46899999999999999999999999999999653
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.13 Score=58.72 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=55.6
Q ss_pred CCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCC--CHHH-
Q 004726 97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--TSEE- 173 (733)
Q Consensus 97 ~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i--~a~e- 173 (733)
...|+|++|.|.|.|||..+...||++|+.+++.+.+ -|+...+. .+|+.+ +.++
T Consensus 245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~ifl--------------------tGP~vIk~--~tGeeV~~s~eeL 302 (758)
T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIIL--------------------TGAPAINK--MLGREVYTSNLQL 302 (758)
T ss_dssp TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEES--------------------SCHHHHHH--HHTSCCCSCTHHH
T ss_pred cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEE--------------------eCHHHHHH--HhCCccccCchhc
Confidence 4689999999999999999999999999998864332 12222211 256665 4443
Q ss_pred -----HHHcCCccEEcCcchHHHHHHHHHHHHHc
Q 004726 174 -----GWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (733)
Q Consensus 174 -----A~~~Glv~~vv~~~~l~~~a~~~a~~~a~ 202 (733)
-...|++|.+++.++ .+.+.++++..
T Consensus 303 GGA~vh~~sGvad~va~dd~---eal~~ir~lLs 333 (758)
T 3k8x_A 303 GGTQIMYNNGVSHLTAVDDL---AGVEKIVEWMS 333 (758)
T ss_dssp HSHHHHTTTTSSSEEESSHH---HHHHHHHHHHT
T ss_pred chhhHHHhcCCeeEEecCHH---HHHHHHHHHHh
Confidence 236899999997553 44455555544
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.056 Score=55.54 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
+||.|.|+ |.+|+.++..|.+.||+|++..|+++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 37999988 99999999999999999999999764
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.017 Score=61.21 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=45.5
Q ss_pred ceEEEEcCCcCcHHHHHH-H-HH-CCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATA-H-IL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~-l-~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
.||+|||+|.||..+... + .. .+++|+ ++|+++++.+... ....+...+++ +
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 59 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAP-----------------------IYSHIHFTSDLDE 59 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSG-----------------------GGTTCEEESCTHH
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHH-----------------------hcCCCceECCHHH
Confidence 489999999999974433 3 32 367877 8899987642210 01223445666 4
Q ss_pred ccC--CCCEEEEeccCChHH
Q 004726 384 EFK--DVDMVIEAVIESVPL 401 (733)
Q Consensus 384 ~l~--~aDlVI~avpe~~~~ 401 (733)
.++ ++|+|++|+|.....
T Consensus 60 ll~~~~~D~V~i~tp~~~h~ 79 (345)
T 3f4l_A 60 VLNDPDVKLVVVCTHADSHF 79 (345)
T ss_dssp HHTCTTEEEEEECSCGGGHH
T ss_pred HhcCCCCCEEEEcCChHHHH
Confidence 444 489999999965543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.064 Score=54.89 Aligned_cols=42 Identities=29% Similarity=0.286 Sum_probs=34.5
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 35 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~ 77 (281)
T 4dry_A 35 IALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEI 77 (281)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 4555565 88999999999999999999999998877765443
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.048 Score=54.99 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=34.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.|++++.++...+
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAA 50 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45667776 899999999999999999999999988776543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.083 Score=53.52 Aligned_cols=42 Identities=29% Similarity=0.259 Sum_probs=34.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 22 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 64 (267)
T 1vl8_A 22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQK 64 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45667766 8999999999999999999999999877665443
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.26 Score=51.26 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=34.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|+.++..|++.|++|++.+++.+..+..
T Consensus 12 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 51 (342)
T 1y1p_A 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL 51 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence 57999988 9999999999999999999999998776543
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.074 Score=55.82 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=60.2
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHC-CCeeEEEeCCh---HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc--
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-- 380 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~---e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-- 380 (733)
|.||+|+|+ |.+|..+...|.+. .++++.+..+. ..-+.. . .....+ .+.. .+.+..
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~-~---~~~p~~--~~~~----------~~~v~~~~ 67 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI-S---DLHPQL--KGIV----------ELPLQPMS 67 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH-H---HHCGGG--TTTC----------CCBEEEES
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch-H---HhCccc--cCcc----------ceeEeccC
Confidence 478999995 99999999999884 56887765443 211111 0 000000 0100 122222
Q ss_pred Ccccc-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH
Q 004726 381 DYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 381 ~~~~l-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
+.+.+ +++|+||+|+| ...-+++..++ +..++.++++++...+
T Consensus 68 ~~~~~~~~~Dvvf~a~p--~~~s~~~~~~~---~~~g~~vIDlSa~fR~ 111 (337)
T 3dr3_A 68 DISEFSPGVDVVFLATA--HEVSHDLAPQF---LEAGCVVFDLSGAFRV 111 (337)
T ss_dssp SGGGTCTTCSEEEECSC--HHHHHHHHHHH---HHTTCEEEECSSTTSS
T ss_pred CHHHHhcCCCEEEECCC--hHHHHHHHHHH---HHCCCEEEEcCCcccc
Confidence 34445 89999999999 55545555544 3467888888887644
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.16 Score=52.01 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=30.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.+|.|||+|..|+.+|..|+++|. +++++|.+.
T Consensus 37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 489999999999999999999997 899999876
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.043 Score=57.00 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=31.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
++|.|+|+ |.+|+.++..|++.|++|++.+|+++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~ 46 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS 46 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence 57999996 99999999999999999999999875
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.045 Score=57.64 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=31.6
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
.++|.|.|+ |.+|+.++..|++.|++|++++++..
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 368999996 99999999999999999999999654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.04 Score=54.48 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=33.2
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQAL 45 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 35667765 8999999999999999999999998876654
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.057 Score=53.93 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=33.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 45 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA 45 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45777776 8999999999999999999999998876654
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.04 Score=56.14 Aligned_cols=42 Identities=10% Similarity=0.241 Sum_probs=34.4
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 28 ~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l 70 (271)
T 4ibo_A 28 TALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEF 70 (271)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 3444455 89999999999999999999999999887765543
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.14 Score=53.75 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=28.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLL 345 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~ 345 (733)
.||+|+|+|.||..+++.|.++ +++|+ +.|++++...
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~ 40 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA 40 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHH
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHH
Confidence 4899999999999999999874 56765 4577655443
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.067 Score=54.44 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=34.0
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~ 63 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAG 63 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45556665 899999999999999999999999987766543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.091 Score=54.83 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=36.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l 52 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL 52 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 46777776 89999999999999999999999999888765543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.057 Score=54.18 Aligned_cols=43 Identities=23% Similarity=0.174 Sum_probs=35.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+++.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 8 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 51 (250)
T 3nyw_A 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEI 51 (250)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 34566666 89999999999999999999999999887765544
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.055 Score=54.86 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=34.9
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l 48 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEI 48 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 4555565 88999999999999999999999999887765443
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.046 Score=55.29 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=35.4
Q ss_pred ceEEEEcC-C-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ | -+|..+|..|++.|++|++.+++.+.++...+
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 65 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRD 65 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence 46777798 7 59999999999999999999999988776544
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.065 Score=55.18 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.4
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
+++|.|+|+ |.+|+.++..|++.|++|++.+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 468999997 9999999999999999999999984
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.1 Score=54.96 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=31.3
Q ss_pred CcceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 307 ~~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
..++|.|+|+ |.+|+.++..|++.|++|++++|++
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3468999998 9999999999999999999999976
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.033 Score=55.13 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=30.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
.|+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 49999999999999999999999999999864
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.073 Score=53.38 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=34.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 55 (260)
T 3awd_A 14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVE 55 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46778876 999999999999999999999999887665433
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.095 Score=52.97 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=35.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
++|.|.|+ |-+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 9 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 52 (265)
T 3lf2_A 9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESAL 52 (265)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 35666665 88999999999999999999999999887765544
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.052 Score=54.79 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=33.5
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 47 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM 47 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45777776 8999999999999999999999998876654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.074 Score=53.81 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=34.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 56 (267)
T 1iy8_A 14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA 56 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45667765 8999999999999999999999999887665443
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.071 Score=53.30 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=34.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
+++.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGD 49 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45667766 899999999999999999999999988766543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.085 Score=52.77 Aligned_cols=43 Identities=28% Similarity=0.274 Sum_probs=36.4
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~ 53 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI 53 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 46677776 89999999999999999999999999887765443
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.061 Score=54.34 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=33.9
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus 12 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 53 (262)
T 3pk0_A 12 SVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVAD 53 (262)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4545555 8999999999999999999999999887765443
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.043 Score=55.47 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=31.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~ 345 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.+.
T Consensus 28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~ 65 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEHASV 65 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 45666665 88999999999999999999999987653
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.069 Score=54.38 Aligned_cols=41 Identities=22% Similarity=0.196 Sum_probs=34.7
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 74 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA 74 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHH
Confidence 46777766 899999999999999999999999987765443
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.098 Score=51.93 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=34.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus 8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (248)
T 2pnf_A 8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAE 49 (248)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 45666666 899999999999999999999999887765543
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.082 Score=52.91 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=33.2
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
+|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T 3asu_A 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_dssp EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4555565 899999999999999999999999987765433
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.085 Score=53.52 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=34.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~ 72 (272)
T 1yb1_A 32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETA 72 (272)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHH
Confidence 56778876 89999999999999999999999988766543
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.071 Score=59.68 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=32.5
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
++||.|.|+ |.+|+.++..|++.|++|+++++++..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~ 183 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK 183 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 458999995 999999999999999999999998764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.085 Score=53.31 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=35.2
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 54 (264)
T 3ucx_A 12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ 54 (264)
T ss_dssp CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH
Confidence 35666666 7899999999999999999999999887776543
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.084 Score=53.02 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=34.2
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 44 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS 44 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35667765 899999999999999999999999987765543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.085 Score=53.76 Aligned_cols=42 Identities=21% Similarity=0.133 Sum_probs=34.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 65 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE 65 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45666665 8999999999999999999999999877665443
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.058 Score=55.10 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=35.4
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 54 (281)
T 3svt_A 12 RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQE 54 (281)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45666665 8999999999999999999999999887776543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.46 E-value=0.055 Score=54.97 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=33.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 10 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 49 (270)
T 1yde_A 10 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL 49 (270)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45677766 8999999999999999999999998876553
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.054 Score=56.60 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=30.5
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeE-EEeCChHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVV-LKEVNSEY 343 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~e~ 343 (733)
|.||+|||+ |.||...+..+.+.+.+++ ++|+++++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~ 40 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV 40 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence 468999999 7899999999999888654 77888764
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.13 Score=52.96 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=36.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l 70 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI 70 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46777776 89999999999999999999999998877654433
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.067 Score=55.69 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=30.6
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeE-EEeCChHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVV-LKEVNSEY 343 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~e~ 343 (733)
|.||+|||+ |.||...+..+...+.+|+ ++|+++++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~ 40 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNV 40 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence 468999999 7899999999999888754 78998875
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.14 Score=53.91 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=32.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
++|+|+|.|.+|...|+.+...|.+|+++|+++++
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~ 210 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER 210 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence 58999999999999999999999999999999764
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.081 Score=56.61 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=45.3
Q ss_pred eEEEEcCCcCcHHHHHHHHH--------CCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 310 KVAVIGGGLMGSGIATAHIL--------NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~--------~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
||||||+|.||..-+..+.. .+.+|+ ++|++++++++..+. .+.-...+
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~ 84 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE----------------------FGFEKATA 84 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH----------------------HTCSEEES
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH----------------------hCCCeecC
Confidence 79999999999876665533 245654 789999887765332 12223455
Q ss_pred Ccc-cc--CCCCEEEEeccCChHH
Q 004726 381 DYS-EF--KDVDMVIEAVIESVPL 401 (733)
Q Consensus 381 ~~~-~l--~~aDlVI~avpe~~~~ 401 (733)
|++ .+ .+.|+|+.|+|.....
T Consensus 85 d~~ell~~~~iDaV~IatP~~~H~ 108 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTPNQFHA 108 (393)
T ss_dssp CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred CHHHHhcCCCCcEEEECCChHHHH
Confidence 663 34 4689999999966554
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.11 Score=52.77 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=35.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
++|.|.|+ |-+|.++|..|++.|++|++.+++.+.++...+.+
T Consensus 28 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 71 (277)
T 4fc7_A 28 KVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKL 71 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 34556666 78999999999999999999999998877665443
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.1 Score=52.96 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=34.4
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|+++| |+ |-+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~ 72 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAF 72 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45555 55 88999999999999999999999998877665443
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.081 Score=54.11 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=55.5
Q ss_pred ceEEEEc-CCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIG-GGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.||+|+| +|.||..++..+.+. +++++ ++|++..... +.+ ...+...+ ...+..++++ +.
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~-G~d-----~gel~G~~----------~~gv~v~~dl~~l 85 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFV-DKD-----ASILIGSD----------FLGVRITDDPESA 85 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTT-TSB-----GGGGTTCS----------CCSCBCBSCHHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-ccc-----hHHhhccC----------cCCceeeCCHHHH
Confidence 4899999 899999999998754 67766 5587643210 000 00000000 0124455666 45
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
+.++|+||++.+ ++.....+.. .+..+.-+++.|++++
T Consensus 86 l~~aDVvIDFT~--p~a~~~~~~~---~l~~Gv~vViGTTG~~ 123 (288)
T 3ijp_A 86 FSNTEGILDFSQ--PQASVLYANY---AAQKSLIHIIGTTGFS 123 (288)
T ss_dssp TTSCSEEEECSC--HHHHHHHHHH---HHHHTCEEEECCCCCC
T ss_pred hcCCCEEEEcCC--HHHHHHHHHH---HHHcCCCEEEECCCCC
Confidence 789999999886 5543333333 3334444545555544
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.27 Score=49.15 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=31.5
Q ss_pred ceEEEE-c-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 309 ~kI~VI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
.|+.|| | ++-+|.++|..|++.|.+|++.|++++.++.
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~ 41 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSAD 41 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 354555 5 4789999999999999999999999887654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.13 Score=51.65 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=34.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 10 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (260)
T 2ae2_A 10 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLT 51 (260)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777776 899999999999999999999999987766543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.062 Score=54.83 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=34.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus 33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 75 (276)
T 3r1i_A 33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE 75 (276)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 35666665 8899999999999999999999999887765443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.093 Score=54.13 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=31.2
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
+++|.|+|+ |.+|+.++..|++.|++|++.+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 38 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 467999996 9999999999999999999999983
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.057 Score=56.61 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=43.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC---------Cee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN---------IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G---------~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 378 (733)
-||+|||+|.||+.++..+.+.. .+| .++|++.++.+ + +. ....
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~----------------~-~~---------~~~~ 57 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR----------------A-IP---------QELL 57 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC----------------S-SC---------GGGE
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh----------------c-cC---------cccc
Confidence 47999999999999999998763 455 46687754311 1 11 1123
Q ss_pred ccCc-cccCCCCEEEEeccCC
Q 004726 379 VLDY-SEFKDVDMVIEAVIES 398 (733)
Q Consensus 379 ~~~~-~~l~~aDlVI~avpe~ 398 (733)
++|+ +.+ +.|+|++|+|..
T Consensus 58 ~~d~~~ll-~iDvVve~t~~~ 77 (332)
T 2ejw_A 58 RAEPFDLL-EADLVVEAMGGV 77 (332)
T ss_dssp ESSCCCCT-TCSEEEECCCCS
T ss_pred cCCHHHHh-CCCEEEECCCCc
Confidence 5566 445 999999999855
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.25 E-value=0.074 Score=54.86 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=33.3
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
+|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 28 ~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~ 68 (297)
T 1xhl_A 28 SVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQ 68 (297)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4555555 899999999999999999999999988766543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.23 E-value=0.094 Score=52.21 Aligned_cols=41 Identities=20% Similarity=0.043 Sum_probs=34.5
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFEN 47 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35666666 899999999999999999999999988776544
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.14 Score=53.81 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=49.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHH--HHHHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD--KANNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~--~~~~~~~~i~~~~~~-~ 383 (733)
-||||+|+|.||..++..+.+. +.+|+ +.|++++.+....+.. ..--.+.+... .... ..+....++ +
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~-----g~~~~~~~~~~v~~~~~--~~~~v~~d~~~ 75 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKEL-----GIPVYAASEEFIPRFEK--EGFEVAGTLND 75 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHT-----TCCEEESSGGGHHHHHH--HTCCCSCBHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhc-----CccccccccccceeccC--CceEEcCcHHH
Confidence 4899999999999999999876 45654 5688776655432210 00000000000 0000 122333444 3
Q ss_pred ccCCCCEEEEeccCChH
Q 004726 384 EFKDVDMVIEAVIESVP 400 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~ 400 (733)
.+.++|+|++|.|....
T Consensus 76 l~~~vDvV~~aTp~~~h 92 (334)
T 2czc_A 76 LLEKVDIIVDATPGGIG 92 (334)
T ss_dssp HHTTCSEEEECCSTTHH
T ss_pred hccCCCEEEECCCcccc
Confidence 45789999999996654
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.088 Score=52.63 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=34.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |-+|.++|..|++.|++|++.+++++.++...+
T Consensus 7 k~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (247)
T 3rwb_A 7 KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAA 48 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45667776 889999999999999999999999988776543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.075 Score=54.16 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=34.5
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 30 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~ 71 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTAT 71 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45677776 899999999999999999999999987765433
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.084 Score=53.44 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=35.0
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus 22 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 64 (266)
T 4egf_A 22 RALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRAL 64 (266)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4555565 89999999999999999999999999887765544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 733 | ||||
| d1mj3a_ | 260 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat | 3e-40 | |
| d1wdka4 | 310 | c.14.1.3 (A:1-310) Fatty oxidation complex alpha s | 2e-36 | |
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 3e-33 | |
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 1e-29 | |
| d1wdka2 | 95 | a.100.1.3 (A:621-715) Fatty oxidation complex alph | 5e-21 | |
| d1wdka1 | 124 | a.100.1.3 (A:497-620) Fatty oxidation complex alph | 1e-20 | |
| d1uiya_ | 253 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The | 6e-20 | |
| d1dcia_ | 275 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 1e-16 | |
| d1hzda_ | 266 | c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T | 3e-15 | |
| d1q52a_ | 297 | c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter | 3e-14 | |
| d1nzya_ | 269 | c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps | 8e-13 | |
| d2f6qa1 | 245 | c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C | 2e-12 | |
| d1pjha_ | 266 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 1e-11 | |
| d1f0ya1 | 99 | a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl | 1e-11 | |
| d1f0ya1 | 99 | a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl | 0.001 | |
| d1ef8a_ | 261 | c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc | 6e-10 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 1e-09 | |
| d1wz8a1 | 263 | c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT | 3e-08 | |
| d1sg4a1 | 249 | c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d | 9e-08 | |
| d2fw2a1 | 258 | c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum | 3e-06 | |
| d1szoa_ | 249 | c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus | 7e-06 | |
| d2a7ka1 | 230 | c.14.1.3 (A:1-230) Carbapenem biosynthes protein C | 2e-05 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 146 bits (370), Expect = 3e-40
Identities = 69/173 (39%), Positives = 86/173 (49%), Gaps = 5/173 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
N V +I L P NAL ++ L E V AIVLTG F+ G DI
Sbjct: 14 NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
Q S + I KKP++AAV G ALGGG ELAM C A K Q
Sbjct: 74 QNRTFQDCYSGK----FLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
G PE+ LG IPG GGTQRL R VG S A+EM+L I++++ + GL+ +
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 182
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 137 bits (344), Expect = 2e-36
Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 6/301 (1%)
Query: 6 VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
+T+ G+ + VN + L+ + + VK ++++ F
Sbjct: 8 ITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIV 67
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
G DI F + D L+ + + ED P VAA+ G+ALGGGLE+ +
Sbjct: 68 GADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADF 127
Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
R+ A ++GLPE+ LG+ PGFGGT RLPRL+G+ A+E + K +E+ K+ +DA
Sbjct: 128 RVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDA 187
Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA---KKTAP 239
VVT+++L + + + + L+ +++ + + P
Sbjct: 188 VVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGP 247
Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
N P + I++ G + EA F +L S L+ +F + K V
Sbjct: 248 NYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVY 307
Query: 300 D 300
D
Sbjct: 308 D 308
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 124 bits (311), Expect = 3e-33
Identities = 60/184 (32%), Positives = 109/184 (59%)
Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
+ V++ AV+G G+MG GIA +++K++N + +G+ + G V +G++T
Sbjct: 2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61
Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
K L ++ L Y +F +VD+V+EAV+E+ +KQ + +E+E ILA+NTST
Sbjct: 62 PAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
I ++++ + + +G HFF+P H+MPL+E++R E++S + + K + K P+V
Sbjct: 122 ISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181
Query: 486 VGNC 489
V +C
Sbjct: 182 VNDC 185
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (285), Expect = 1e-29
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 6/188 (3%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL--- 364
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63
Query: 365 --TQDKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
+ L + D + D+V+EA++E++ +K ++F L+K H I A+
Sbjct: 64 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
NTS++ + + T+ QDR G HFF+P VM L+E+++T TS + L+ K + K
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 183
Query: 482 VPVVVGNC 489
PV +
Sbjct: 184 HPVSCKDT 191
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 86.0 bits (213), Expect = 5e-21
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN 677
VT+++I+ ++ P+ E+ R LE+GIV A++ D V G+ FP +RGG + + D++G
Sbjct: 2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVA 61
Query: 678 YVYTSLKKWSQLYGNFFKPSRFLEERATKG 707
++++ G + P+ L E A G
Sbjct: 62 EFVALADQYAE-LGALYHPTAKLREMAKNG 90
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 86.4 bits (213), Expect = 1e-20
Identities = 50/124 (40%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEF 550
GF VNR FPY LVS GVD RID + FG P+GP L+D+ G
Sbjct: 1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60
Query: 551 DKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTYEKGSKPKP----DPSVL----PII 600
+ FPDR +D L ++ R G+ NGKG Y YE K K D SVL PI+
Sbjct: 61 AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIV 120
Query: 601 EECR 604
E R
Sbjct: 121 YEQR 124
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Score = 87.8 bits (216), Expect = 6e-20
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 5/229 (2%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
V +E G+ VA++ L +P N L+ + L ++ + V+A+VLTG G FS G
Sbjct: 2 VQVEKGH--VAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59
Query: 65 FDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
D+ ++V G + + + + KP VAAV G A+ GG LA+ C
Sbjct: 60 ADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
+ + +LG E + L R VG A +++L + + + E LGL++ +
Sbjct: 120 VMDEEARLGYTE-VKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178
Query: 184 VTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232
+ L+ ++ A ++A +R + +LA L
Sbjct: 179 APPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAAL 227
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 78.6 bits (192), Expect = 1e-16
Identities = 46/242 (19%), Positives = 96/242 (39%), Gaps = 15/242 (6%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
V + L P NA+ L + F++ + D +A+V++G G F+ G D+
Sbjct: 11 QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDM 70
Query: 71 ---------QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
V + +IE C KP++AA+ G +GGG++L C
Sbjct: 71 ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE-MMLLSKSITSEEGWKLGLI 180
R + E+ +G+ G QRLP+++G + + ++ + ++E GL+
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQAKK 236
V ++++ + + + P + + S+ E+ + + + +
Sbjct: 191 SRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ 250
Query: 237 TA 238
T
Sbjct: 251 TQ 252
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.0 bits (180), Expect = 3e-15
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 2/211 (0%)
Query: 8 MEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
+E N G+ ++ + N+L+ ++ L + S V+ I++
Sbjct: 9 LEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGA 68
Query: 67 INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
+ + +V + V+N I + P +AA++GLALGGGLELA+ C R+AA
Sbjct: 69 DLKERAKMSSSEVGPFVSK-IRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAA 127
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
++GL E L +IPG GGTQRLPR +G+S A E++ ++ + +E +GLI V+
Sbjct: 128 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 187
Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRTDKL 217
+ + ALD+A P R KL
Sbjct: 188 NQEGDAAYRKALDLAREFLPQGPVAMRVAKL 218
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 71.7 bits (174), Expect = 3e-14
Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 18/183 (9%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+D + P V NA V L + A DV ++LTGNG G
Sbjct: 27 DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 86
Query: 71 QKVHGAGDVSLMPDVSVEL----------------VVNLIEDCKKPIVAAVEGLALGGGL 114
S S + V LI K ++ V G A GGG
Sbjct: 87 GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 146
Query: 115 ELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
L + C +A+ + + +G G G+ L R VG A E+ L ++ T+E+
Sbjct: 147 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 206
Query: 174 GWK 176
+
Sbjct: 207 MHQ 209
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Score = 67.1 bits (162), Expect = 8e-13
Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 5/230 (2%)
Query: 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
+ V DGVA IT+ P NAL++ + + D A D V A+++TG F G
Sbjct: 5 IGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG 63
Query: 65 FDINVFQKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
F + G V ++ +++ I K+P++AA+ G+A GGGL +++
Sbjct: 64 FYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASD 123
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
I A + T+G+ + L R+VG+ +A+E+ML ++++ EE GL+
Sbjct: 124 MAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVS 183
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
V +E +V+ A ++AA G + E +
Sbjct: 184 RVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEI 233
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.5 bits (158), Expect = 2e-12
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
Query: 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
DG+ I P NA+ + + + A S+DD VLTGNG +S G D+ F
Sbjct: 10 EDGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNF 68
Query: 71 QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ G + +V L V D KP++A V G A+G + L A A+ +
Sbjct: 69 TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR 128
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
P LG P + P+++ +KA EM++ K +T+ E GL+ V
Sbjct: 129 ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 188
Query: 189 LLKVSRLWALDIAAR 203
K A
Sbjct: 189 FQKEVWTRLKAFAKL 203
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.9 bits (154), Expect = 1e-11
Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 22/243 (9%)
Query: 5 RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
+++ + II LINP NAL L + E A DV ++ +G FS
Sbjct: 6 KISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 64
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGL 114
G D K G + S + V + K ++ + G A+G
Sbjct: 65 GADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA 124
Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS-KSITSEE 173
L C + L + GGT L + L+ K +
Sbjct: 125 ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI 184
Query: 174 GWKLGLIDAVVTSEELL--KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
+ G I + ++ + ++ L+ S +++LK
Sbjct: 185 MCENGFISKNFNMPSSNAEAFNAKVLEELREK----VKGLYLP----SCLGMKKLLKSNH 236
Query: 232 LQA 234
+ A
Sbjct: 237 IDA 239
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 1e-11
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFG--LPIGPFQLLDLAGYGVAAATSK 548
GF VNR PY A L G G P+GPF+LLD G
Sbjct: 1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60
Query: 549 EFDKAFPD--RSFQSPLVDLLLKSGRNGKANGKGLYTYE 585
+ + + SP ++ L+ + GK G+G Y Y+
Sbjct: 61 GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 99
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 623 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 682
IV +L P + E+ R+ E G D+D A LG +P G D VG +
Sbjct: 3 IVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFI 58
Query: 683 LKKWSQLYGN--FFKPSRFLEERATKG 707
+ W ++ +PS L + +
Sbjct: 59 VDGWHEMDAENPLHQPSPSLNKLVAEN 85
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Score = 58.3 bits (139), Expect = 6e-10
Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 4/235 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M+ V + + VA+I NAL+ + L + +R +++ I+L G
Sbjct: 1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
++ + G D D ++ I+ KPI++ VEG GG E+ M
Sbjct: 59 SKVFSAGHDIHELPSGGRDPLSYDDPLRQITRM-IQKFPKPIISMVEGSVWGGAFEMIMS 117
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
IAA + + + LGV G L R G E++ + IT++ +G+
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGI 177
Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234
++ VV EEL + A I+ + I + ++ + + R+Q
Sbjct: 178 LNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQG 232
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 56.9 bits (137), Expect = 1e-09
Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 31/226 (13%)
Query: 286 FFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHIL--------NNIYVVLK 337
F +K +I L G L+ ++ VV+
Sbjct: 22 FMRACEVAKEVGKPEIAL----THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVID 77
Query: 338 EVNSEYLLKGIKT-----IEANVRGLV-TRGKLTQDKANNALKMLKG-------VLDYSE 384
E + + +++ + I +R +V + K + ++ D E
Sbjct: 78 EFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDRE 137
Query: 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQD-R 440
+ D+VI + + + I + A P I+ + + + +D
Sbjct: 138 AVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN 196
Query: 441 IIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
I H + + I + V L +GKI + +
Sbjct: 197 ITSYHPGCVPEMKGQVYIAEGYASEEAVNK-LYEIGKIARGKAFKM 241
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Score = 53.3 bits (126), Expect = 3e-08
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
P + GV IT +NA+ + GL + + + + V+A++L G GG FS
Sbjct: 9 PGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSA 68
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
G + +++ + + L +V + +P+VAAVE +A+G GL LA+
Sbjct: 69 GGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAAD 126
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Score = 51.8 bits (122), Expect = 9e-08
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 5 RVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
RV +E GVA++ NPPVN+L++ + L E+ + + ++LT +
Sbjct: 3 RVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGV 60
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (110), Expect = 3e-06
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD--IN 68
DG I L NAL ++ + + A + DD K ++ + G F G D
Sbjct: 10 DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 68
Query: 69 VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
V + SL +++ VN KKPIV +V G A+G G + C A K
Sbjct: 69 VRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 128
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163
P T G P + P+++G + A EM+
Sbjct: 129 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEML 163
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Score = 45.9 bits (107), Expect = 7e-06
Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 13/213 (6%)
Query: 1 MAAP---------RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVK 50
+A P + +E + GV ++T+ L F + + K
Sbjct: 1 LATPFQEYSQKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENK 59
Query: 51 AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
V+ G S +I+ G + ++N + + P++AAV G
Sbjct: 60 --VVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT 117
Query: 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170
M A T P G++PG G P ++G ++ +L + +
Sbjct: 118 NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELD 177
Query: 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
+ G ++ V++ +ELL + A IA +
Sbjct: 178 ARTALDYGAVNEVLSEQELLPRAWELARGIAEK 210
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVK 50
+ E +D V +ITL +P N + + +KD A + D V+
Sbjct: 1 MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVR 46
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 100.0 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 100.0 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 100.0 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 100.0 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 100.0 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 100.0 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 100.0 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 100.0 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 100.0 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 100.0 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 100.0 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 100.0 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 100.0 | |
| d1wdka1 | 124 | Fatty oxidation complex alpha subunit, C-terminal | 99.92 | |
| d1f0ya1 | 99 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.92 | |
| d1wdka2 | 95 | Fatty oxidation complex alpha subunit, C-terminal | 99.91 | |
| d1f0ya1 | 99 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.88 | |
| d1wdka1 | 124 | Fatty oxidation complex alpha subunit, C-terminal | 99.81 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.74 | |
| d1wdka2 | 95 | Fatty oxidation complex alpha subunit, C-terminal | 99.71 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.69 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.58 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.57 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.57 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.54 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.5 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.49 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.25 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.23 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.15 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.13 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.07 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.06 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.01 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.0 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 98.82 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.58 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.57 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.55 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.53 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.5 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.48 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.43 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.41 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.39 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.38 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.37 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.27 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.23 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.21 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.2 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.16 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.05 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.99 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.94 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.92 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.83 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.8 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.77 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.77 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 97.76 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.72 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.65 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.64 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 97.63 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.62 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 97.6 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.6 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.6 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.56 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.55 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.52 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.47 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.43 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.41 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 97.4 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.36 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 97.3 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.25 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.24 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.12 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.11 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.01 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.01 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.96 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.89 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 96.85 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.84 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.84 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.77 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.74 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.72 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.65 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.61 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.56 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 96.51 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.5 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.44 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 96.38 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.37 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.36 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.34 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.27 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.24 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.23 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 96.18 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.14 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.14 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.09 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.07 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.06 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.91 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.9 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.86 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 95.85 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.79 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.76 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 95.66 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 95.66 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 95.61 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.6 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.59 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.51 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.51 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.31 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.31 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.29 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.29 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.26 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 95.25 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.23 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.23 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.18 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.17 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.17 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.16 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.16 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.06 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.04 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.03 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.03 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.99 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.98 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 94.97 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.92 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.92 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 94.86 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 94.82 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.74 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.64 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 94.63 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.63 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.62 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.59 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.58 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.53 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.52 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.51 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.47 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.43 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 94.41 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.4 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 94.39 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.35 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 94.33 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.28 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.19 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.16 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.14 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 94.13 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.12 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 94.07 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.0 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.95 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 93.9 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.88 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.81 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.78 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 93.77 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 93.76 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.73 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.7 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.69 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 93.65 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 93.64 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.63 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 93.58 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.52 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 93.51 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 93.51 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.45 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 93.45 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 93.44 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 93.44 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.03 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 93.02 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 93.01 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.92 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 92.78 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.74 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 92.7 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.69 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 92.58 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.54 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 92.48 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 92.46 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.44 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 92.41 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.37 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 92.35 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 92.34 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.31 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.22 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.2 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 92.17 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 92.04 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 91.98 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 91.84 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 91.82 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 91.69 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.67 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 91.66 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 91.65 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 91.64 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 91.6 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 91.44 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 91.25 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.11 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 91.05 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 91.0 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 90.99 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 90.96 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 90.74 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.69 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 90.66 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 90.61 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 90.44 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.44 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 90.37 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.31 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.21 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 90.03 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 90.0 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 89.71 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 89.67 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 89.64 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.61 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 89.6 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 89.3 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 89.2 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.1 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.99 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 88.97 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 88.85 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 88.54 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 88.4 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 88.28 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 88.18 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 88.08 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 88.07 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 88.02 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 87.98 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 87.9 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 87.79 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 87.75 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 87.69 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 87.59 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 87.58 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 87.13 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 86.77 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 86.76 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 86.32 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 86.28 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 86.15 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 85.86 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 85.59 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 85.17 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 85.12 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 85.07 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 84.86 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 84.8 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 84.78 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 84.78 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 84.68 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 84.26 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 84.26 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 84.24 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 84.16 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 84.12 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 83.59 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 83.29 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 83.05 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 82.93 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 82.86 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 82.61 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 82.53 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 82.41 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 82.31 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 82.15 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 82.0 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 81.76 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 81.68 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 81.58 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 81.53 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 81.25 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 80.57 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 80.47 |
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=7e-53 Score=444.09 Aligned_cols=298 Identities=26% Similarity=0.373 Sum_probs=253.6
Q ss_pred CCC--CcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC
Q 004726 1 MAA--PRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA 76 (733)
Q Consensus 1 m~~--~~v~~~~~~~~i~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~ 76 (733)
|.| +.++++..++||++|+|| +|+ .|+||.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++......
T Consensus 1 M~~~~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~ 80 (310)
T d1wdka4 1 MIYEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKL 80 (310)
T ss_dssp CCEECSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTS
T ss_pred CCcCCceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccc
Confidence 665 589998867899999998 674 7999999999999999999999999999999999999999999998764433
Q ss_pred Cccc--ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhcccc
Q 004726 77 GDVS--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154 (733)
Q Consensus 77 ~~~~--~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~ 154 (733)
.+.. ......++++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus 81 ~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~i 159 (310)
T d1wdka4 81 PDAELIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLI 159 (310)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHH-HHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhh
Confidence 3211 1112244566 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCc--HHHHHHHHHHHH
Q 004726 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL--SEAREVLKLARL 232 (733)
Q Consensus 155 G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 232 (733)
|..++++|+++|++++|+||+++||||+|||++++.+.+.++|+++++.+.++............. ......+...+.
T Consensus 160 G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (310)
T d1wdka4 160 GVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKG 239 (310)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhh
Confidence 999999999999999999999999999999999999999999999998876543322221111111 111223333333
Q ss_pred -HHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCC
Q 004726 233 -QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299 (733)
Q Consensus 233 -~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~ 299 (733)
..++++++|||+.+++++|+++...+++++|+.|++.|.+++.|++++++|++|++||..+|.++.+
T Consensus 240 ~~~~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~a~~~ 307 (310)
T d1wdka4 240 FVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVY 307 (310)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCC
Confidence 3558899999999999999999999999999999999999999999999999999999998876543
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.9e-50 Score=415.55 Aligned_cols=254 Identities=33% Similarity=0.429 Sum_probs=228.8
Q ss_pred CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 2 ~~~~v~~~~~--~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
+|++|.+++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.......
T Consensus 2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 80 (260)
T d1mj3a_ 2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD- 80 (260)
T ss_dssp CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH-
T ss_pred CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhh-
Confidence 4889999983 3589999999995 79999999999999999999999999999999999999999999886532211
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
.......+++ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+
T Consensus 81 --~~~~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~ 157 (260)
T d1mj3a_ 81 --CYSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL 157 (260)
T ss_dssp --HHHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred --hhHHHHHHHH-HHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHH
Confidence 1111222344 5688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++|||++|++.+++.+.+.+++.+++..++.++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~------------------------------ 207 (260)
T d1mj3a_ 158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIV------------------------------ 207 (260)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHH------------------------------
T ss_pred HHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhHHH------------------------------
Confidence 99999999999999999999999999999999999999999999887543
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus 208 ------~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f~ 258 (260)
T d1mj3a_ 208 ------AMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFK 258 (260)
T ss_dssp ------HHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred ------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence 356788999999999999999999999999999999999999999999864
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-49 Score=409.18 Aligned_cols=252 Identities=20% Similarity=0.296 Sum_probs=225.9
Q ss_pred CCcEEEEEecCcEEEEEeC-CC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc--
Q 004726 3 APRVTMEVGNDGVAIITLI-NP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-- 78 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~-~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-- 78 (733)
|++|.++. +++|++|++| || +.|++|.+|+++|.++++.+++| ++++|||||.|++||+|+|++++........
T Consensus 1 y~~i~v~~-~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~ 78 (258)
T d2fw2a1 1 YRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNT 78 (258)
T ss_dssp CCSEEEEE-ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHH
T ss_pred CceEEEEE-ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccc
Confidence 78899999 8899999997 67 47999999999999999999987 5799999999999999999999865322111
Q ss_pred -ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 79 -~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
...+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..
T Consensus 79 ~~~~~~~~~~~~~-~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~ 157 (258)
T d2fw2a1 79 ASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA 157 (258)
T ss_dssp HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred hhhHHHHHHHHHH-HhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcc
Confidence 112334455666 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
++++|+++|++++|++|+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~---------------------------- 209 (258)
T d2fw2a1 158 SANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLE---------------------------- 209 (258)
T ss_dssp HHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred ccchhhccCcccccccccccccccccccccccccccchhhhhhhhhhHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhc
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~ 293 (733)
.+|+.++.....+++++++.|.+.+..++.|+|++|++++|+|||+|+
T Consensus 210 --------~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~ 257 (258)
T d2fw2a1 210 --------ECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE 257 (258)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCC
T ss_pred --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence 456777777777899999999999999999999999999999999986
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=100.00 E-value=1.9e-49 Score=410.79 Aligned_cols=257 Identities=23% Similarity=0.311 Sum_probs=231.3
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc---
Q 004726 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--- 78 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~--- 78 (733)
|++|.+++ +|||++|||||| +.|++|.+|+.+|.++++.+++|+++++|||||.|++||+|+|++++........
T Consensus 2 y~~i~~~i-~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (269)
T d1nzya_ 2 YEAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD 80 (269)
T ss_dssp CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred CCceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence 68999999 799999999999 6899999999999999999999999999999999999999999998854221110
Q ss_pred -ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 79 -~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
........+.++ .++.++||||||+|||+|+|||++|+++|||||++++++|++||.++|+.|++|+++++++++|..
T Consensus 81 ~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~ 159 (269)
T d1nzya_ 81 HFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR 159 (269)
T ss_dssp HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChh
Confidence 111112233555 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
+|+++++||++++|+||+++||||+|+|++++.+++.++|+++++.|+.+++
T Consensus 160 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 211 (269)
T d1nzya_ 160 RAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV---------------------------- 211 (269)
T ss_dssp HHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred hhhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhhHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998765432
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|+.++.+...+++++++.|.+.+..++.+++++|+|++|++||+|++.+.
T Consensus 212 --------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~~ 263 (269)
T d1nzya_ 212 --------MAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV 263 (269)
T ss_dssp --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred --------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCCC
Confidence 5678888888999999999999999999999999999999999999998664
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-49 Score=405.54 Aligned_cols=255 Identities=21% Similarity=0.280 Sum_probs=221.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCcccCCCCchhhhhccCCC
Q 004726 1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~--g~~F~aG~Dl~~~~~~~~~~ 77 (733)
|||++|.++. +++|++|||||| +.|+||.+|+++|.+++++++ ++++++|||+|. |++||+|+|++++......
T Consensus 1 M~~~~i~~~~-~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~- 77 (261)
T d1ef8a_ 1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRD- 77 (261)
T ss_dssp CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----C-
T ss_pred CCCCEEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCcc-
Confidence 9999999999 899999999999 579999999999999999997 457999999986 5799999999998663322
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
...+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|..
T Consensus 78 -~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~ 155 (261)
T d1ef8a_ 78 -PLSYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH 155 (261)
T ss_dssp -TTCTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred -ccccccchhhhH-HHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcc
Confidence 223344556777 779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
++++++++|+.++|+||+++||||+|+|++++.+++.++|++++..+|.+++
T Consensus 156 ~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~---------------------------- 207 (261)
T d1ef8a_ 156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA---------------------------- 207 (261)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred ccccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCchHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 238 APNMPQHQACLDVIEEGIVHGG--YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~--~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|+.++....... ...++.+...+..++.|+|++|++++|++||+|+++.
T Consensus 208 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f~G 260 (261)
T d1ef8a_ 208 --------VIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVG 260 (261)
T ss_dssp --------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCC
T ss_pred --------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCcCCC
Confidence 34566665554433 4556666777889999999999999999999998643
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.7e-49 Score=407.76 Aligned_cols=253 Identities=23% Similarity=0.250 Sum_probs=225.0
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC-Cccc
Q 004726 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~~ 80 (733)
|+.+.++.+++||++||| || +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... ....
T Consensus 8 ~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 86 (263)
T d1wz8a1 8 YPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALL 86 (263)
T ss_dssp CTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHH
T ss_pred CCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccc
Confidence 788999987789999999 66 68999999999999999999999999999999999999999999998654222 1122
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..+|+
T Consensus 87 ~~~~~~~~~~-~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~ 165 (263)
T d1wz8a1 87 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK 165 (263)
T ss_dssp HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred cchhhhhHHH-HHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3333455666 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||+|+|++++++++.++|+++++.||.+++
T Consensus 166 ~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~------------------------------- 214 (263)
T d1wz8a1 166 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALH------------------------------- 214 (263)
T ss_dssp HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred hhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875443
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++....... +.++.|.+.+..++.|+|++|++++|++||+|++
T Consensus 215 -----~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f 262 (263)
T d1wz8a1 215 -----HTKHALNHWYRSFL-PHFELSLALEFLGFSGKELEEGLKALKEKRPPEF 262 (263)
T ss_dssp -----HHHHHHHHHHHTTH-HHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred -----HHHHHHHHHHhChH-HHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCCC
Confidence 45666766665444 5688999999999999999999999999999875
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=6.3e-48 Score=401.12 Aligned_cols=258 Identities=19% Similarity=0.310 Sum_probs=226.2
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
+|+++.++..+++|++||||||+ .|+||.+|+++|.++++.+++|+++|+|||||.|++||+|+|+.++..........
T Consensus 1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~ 80 (275)
T d1dcia_ 1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD 80 (275)
T ss_dssp CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccc
Confidence 58999987657899999999994 79999999999999999999999999999999999999999999886543322111
Q ss_pred c----------cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhh
Q 004726 81 L----------MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRL 150 (733)
Q Consensus 81 ~----------~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l 150 (733)
. .....+.++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~ 159 (275)
T d1dcia_ 81 DVARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL 159 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred cccchhhhhccchhhhHHHH-HHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc
Confidence 1 111233455 56899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHH-HHHHHHcCCCCCHHHHHHcCCccEEcCcch-HHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHH
Q 004726 151 PRLVGLSK-AIEMMLLSKSITSEEGWKLGLIDAVVTSEE-LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228 (733)
Q Consensus 151 ~r~~G~~~-a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~-l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (733)
++++|... +.+++++|++++|+||+++||||+|+|+++ +.+++.++++++++.+|.+++
T Consensus 160 ~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~------------------- 220 (275)
T d1dcia_ 160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ------------------- 220 (275)
T ss_dssp GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHH-------------------
T ss_pred ccccccccccccccccccccchhhhccCCCceeeeehhhhhhhcccccccccccccHHHHH-------------------
Confidence 99999555 568999999999999999999999998655 678889999999998875433
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|+.++.+...+++++++.|...+..++.|+|++|++++|+|||+|++..
T Consensus 221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~~~ 271 (275)
T d1dcia_ 221 -----------------GSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSIT 271 (275)
T ss_dssp -----------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCC
T ss_pred -----------------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCC
Confidence 457778888889999999999999999999999999999999999998743
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.3e-48 Score=395.38 Aligned_cols=247 Identities=23% Similarity=0.328 Sum_probs=220.0
Q ss_pred EEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc--ccccchh
Q 004726 9 EVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--VSLMPDV 85 (733)
Q Consensus 9 ~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~--~~~~~~~ 85 (733)
++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|+|++++........ .......
T Consensus 3 ~ie~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~ 82 (253)
T d1uiya_ 3 QVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLS 82 (253)
T ss_dssp EEECSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred EEeeCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhh
Confidence 3434679999999995 699999999999999999999999999999999999999999998876433221 1112223
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHc
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~lt 165 (733)
...++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++| +|++++|++++|..+|++|++|
T Consensus 83 ~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~-~~~~~~l~~~~g~~~a~~l~l~ 160 (253)
T d1uiya_ 83 LMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLLT 160 (253)
T ss_dssp HHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC-HHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhhh-hHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccc-ccchhhhhcccCHHHHHHHhhc
Confidence 34455 568999999999999999999999999999999999999999999999887 5668899999999999999999
Q ss_pred CCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHH
Q 004726 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (733)
|++++|+||+++||||+|+|++++.+.+.++++++++.++.++ .
T Consensus 161 g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~------------------------------------~ 204 (253)
T d1uiya_ 161 GRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSL------------------------------------R 204 (253)
T ss_dssp CCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHH------------------------------------H
T ss_pred CcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHHH------------------------------------H
Confidence 9999999999999999999999999999999999999886543 2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhc
Q 004726 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (733)
Q Consensus 246 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~ 293 (733)
.+|+.+++....++++++..|.+.+..++.|+|++|++++|++||+|+
T Consensus 205 ~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~ 252 (253)
T d1uiya_ 205 LTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR 252 (253)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence 567889999999999999999999999999999999999999999886
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-48 Score=398.93 Aligned_cols=249 Identities=26% Similarity=0.398 Sum_probs=217.2
Q ss_pred EEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccCCCCchhhhhccCCCcccccchhH
Q 004726 9 EVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSLMPDVS 86 (733)
Q Consensus 9 ~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (733)
+.+++||++||||||+ .|+||.+|+++|.++++.++.|+++++|||||.|+ +||+|.|++.+...... ....+....
T Consensus 10 ~~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~-~~~~~~~~~ 88 (266)
T d1hzda_ 10 EEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS-EVGPFVSKI 88 (266)
T ss_dssp CGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHH-HHHHHHHHH
T ss_pred EEecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccch-hhhhhhhHH
Confidence 3345789999999995 69999999999999999999999999999999885 79999999988654321 122333445
Q ss_pred HHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcC
Q 004726 87 VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS 166 (733)
Q Consensus 87 ~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG 166 (733)
.+++ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|++|++||
T Consensus 89 ~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg 167 (266)
T d1hzda_ 89 RAVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSA 167 (266)
T ss_dssp HHHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHH-HHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccC
Confidence 5666 679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCccEEcCcchHHHHHHHH----HHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 167 KSITSEEGWKLGLIDAVVTSEELLKVSRLW----ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 167 ~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~----a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
++++|++|+++||||+|||++++.+++.+. +++++..||.+
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a----------------------------------- 212 (266)
T d1hzda_ 168 RVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVA----------------------------------- 212 (266)
T ss_dssp CEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHH-----------------------------------
T ss_pred CccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCChHH-----------------------------------
Confidence 999999999999999999987765555544 45555555533
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+.+|++++.+...+++++++.|...+..++.|+|++|++++|++||+|+++
T Consensus 213 -~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~ 264 (266)
T d1hzda_ 213 -MRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK 264 (266)
T ss_dssp -HHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence 3356788889999999999999999999999999999999999999999864
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-46 Score=380.13 Aligned_cols=240 Identities=23% Similarity=0.285 Sum_probs=211.6
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc---
Q 004726 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--- 78 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~--- 78 (733)
|++|.+++ +++|++|||||| +.|++|.+|+.+|.+++++++.|+.+ +||++|.|++||+|+|++++........
T Consensus 2 ~~~i~~~~-~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (245)
T d2f6qa1 2 FETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK 79 (245)
T ss_dssp CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHH
T ss_pred cceEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhcccccccccc
Confidence 68899999 789999999999 68999999999999999999999876 8999999999999999999866432211
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
........++++ ++|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+
T Consensus 80 ~~~~~~~~~~~~-~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~ 158 (245)
T d2f6qa1 80 AKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAK 158 (245)
T ss_dssp HHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHH
T ss_pred cchhhhHHHHHH-hhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccch
Confidence 111222234555 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++++++|++++|+||+++||||+|+|++++++++.++|+++++.||.+++
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 209 (245)
T d2f6qa1 159 ATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR----------------------------- 209 (245)
T ss_dssp HHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH-----------------------------
T ss_pred hhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHH
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG 281 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~ 281 (733)
.+|++++.....++++.++.|.+.+..++.|+|+++
T Consensus 210 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n 245 (245)
T d2f6qa1 210 -------ISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN 245 (245)
T ss_dssp -------HHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred -------HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence 467888888888899999999999999999999974
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=9.7e-46 Score=388.32 Aligned_cols=257 Identities=24% Similarity=0.277 Sum_probs=209.2
Q ss_pred CCCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CcccCCCCchhhhh
Q 004726 2 AAPRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQK 72 (733)
Q Consensus 2 ~~~~v~~~~~-~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-------~~F~aG~Dl~~~~~ 72 (733)
++..|+++.+ ++||++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.| +.||+|.|++....
T Consensus 16 ~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~ 95 (297)
T d1q52a_ 16 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR 95 (297)
T ss_dssp TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred CCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence 4567888874 6899999999995 6999999999999999999999999999999974 46777788876543
Q ss_pred ccCCC------c----ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCC
Q 004726 73 VHGAG------D----VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVI 141 (733)
Q Consensus 73 ~~~~~------~----~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~ 141 (733)
..... . ..........++ ..|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~ 174 (297)
T d1q52a_ 96 SGYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSF 174 (297)
T ss_dssp ----------------------CHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCC
T ss_pred cccccccccccchhhhHHHHHHHHHHHH-HHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccc
Confidence 21110 0 111112234555 6789999999999999999999999999999999865 5799999999999
Q ss_pred CChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcH
Q 004726 142 PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLS 221 (733)
Q Consensus 142 P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 221 (733)
|+++++++|+|++|..+|+++++||++++|+||+++||||+|+|++++++.+.++++++++.++.+++
T Consensus 175 p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~------------ 242 (297)
T d1q52a_ 175 DGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQR------------ 242 (297)
T ss_dssp CCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------
T ss_pred cccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 222 EAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.. ...+.+....|.+.+..++.|+|++|++++|++||+|++.|
T Consensus 243 ------------------------~~K~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~~ 292 (297)
T d1q52a_ 243 ------------------------MLKFAFNLL-DDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP 292 (297)
T ss_dssp ------------------------HHHHHHHHT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred ------------------------HHHHHHHHh-hcChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence 334555443 33455556678888899999999999999999999998755
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=6.2e-45 Score=371.76 Aligned_cols=243 Identities=21% Similarity=0.288 Sum_probs=214.3
Q ss_pred CcEEEEEe-cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-cccCCCCchhhhhccCCCcccc
Q 004726 4 PRVTMEVG-NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 4 ~~v~~~~~-~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
+.+.++.+ ++||++||||||+.|+||.+|+++|.++++.+++|+++++|||+|.|+ +||+|+|++++..... .....
T Consensus 2 ~~ilve~~~~~gIa~itln~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~-~~~~~ 80 (249)
T d1sg4a1 2 QRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSP-AHYAG 80 (249)
T ss_dssp CSEEEEEETTTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCH-HHHHH
T ss_pred CcEEEEEECCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEeccccccccccccc-ccccc
Confidence 45777774 578999999999999999999999999999999999999999999886 6999999998865321 12233
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceE--eCccccCCCCCChhhhhhhccccCHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL--GLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f--~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
+....++++ .++.++||||||+|||+|+|||++|+++|||||++++++| ++||+++|++|++|++++|++++|+.++
T Consensus 81 ~~~~~~~~~-~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 159 (249)
T d1sg4a1 81 YWKAVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA 159 (249)
T ss_dssp HHHHHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred cchhhHHHH-HhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccc
Confidence 334455666 6799999999999999999999999999999999999976 7899999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++++++|++++|++|+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 160 ~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 209 (249)
T d1sg4a1 160 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQ------------------------------ 209 (249)
T ss_dssp HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred cccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVH 284 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~ 284 (733)
..|+.++......+.+.++.|.+.+...+.+++.+++++
T Consensus 210 ------~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le 248 (249)
T d1sg4a1 210 ------LTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ 248 (249)
T ss_dssp ------HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 345667777777788889999999999999999999874
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=100.00 E-value=4.1e-44 Score=361.19 Aligned_cols=201 Identities=27% Similarity=0.383 Sum_probs=179.7
Q ss_pred EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCcccccch
Q 004726 7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 7 ~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
.++.++|+|++|||||| +.|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++.......+...+..
T Consensus 2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (230)
T d2a7ka1 2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWID 81 (230)
T ss_dssp EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHH
T ss_pred EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchh
Confidence 35555889999999999 57999999999999999999999999999999876 78999999999876543333334444
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
...+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+ .+|++++|..+++++++
T Consensus 82 ~~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l 159 (230)
T d2a7ka1 82 RVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIY 159 (230)
T ss_dssp HHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHH
T ss_pred hhhhhh-hcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-ccccccccccccccccc
Confidence 556666 6799999999999999999999999999999999999999999999999998775 57999999999999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhh
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~ 209 (733)
+|++++|+||+++||||+|+|++++.+++.++|+++++.|+.+++
T Consensus 160 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~ 204 (230)
T d2a7ka1 160 QCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI 204 (230)
T ss_dssp HCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred ccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999998875443
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-42 Score=356.80 Aligned_cols=186 Identities=24% Similarity=0.280 Sum_probs=162.7
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc-
Q 004726 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV- 79 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~- 79 (733)
.++.|+++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+||+++.........
T Consensus 3 ~~e~i~~~~-~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~ 81 (266)
T d1pjha_ 3 QNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNK 81 (266)
T ss_dssp CBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------C
T ss_pred CCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhcccccccc
Confidence 467899999 8999999999995 7999999999999999999999999999999999999999999998754322111
Q ss_pred ---------cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeCccccCCCCCChhhhhh
Q 004726 80 ---------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQR 149 (733)
Q Consensus 80 ---------~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~P~~g~~~~ 149 (733)
..+......++ ..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~ 160 (266)
T d1pjha_ 82 YPSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVS 160 (266)
T ss_dssp CSSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHH
T ss_pred ccchhhHHHHHHHHHHHHHH-HHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccc
Confidence 11222333455 57899999999999999999999999999999997 56789999999999999999999
Q ss_pred hccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchH
Q 004726 150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189 (733)
Q Consensus 150 l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l 189 (733)
|+|++|..+|++|++||++++|+||+++||||+|+++++.
T Consensus 161 l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~ 200 (266)
T d1pjha_ 161 LPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSS 200 (266)
T ss_dssp HHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTT
T ss_pred cccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhh
Confidence 9999999999999999999999999999999999976543
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=2.4e-42 Score=352.31 Aligned_cols=205 Identities=20% Similarity=0.291 Sum_probs=184.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|.|++|++++ +++|++||||||+ .|++|.+|+.+|.++++++++|+++|+|||+|.|++||+|+|++++..... ...
T Consensus 10 ~~y~~i~~~~-~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~-~~~ 87 (249)
T d1szoa_ 10 QKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTP-HDW 87 (249)
T ss_dssp TSCTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSH-HHH
T ss_pred CCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhcccc-cch
Confidence 4688999999 7899999999996 699999999999999999999999999999999999999999998854321 223
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEe-CccccCCCCCChhhhhhhccccCHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG-LPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~-~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
..+....++++ +.+.++||||||+|||+|. ||++|+++||+||++++++|. +||+++|++|++|++++|+|++|..+
T Consensus 88 ~~~~~~~~~l~-~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~ 165 (249)
T d1szoa_ 88 DEIIFEGQRLL-NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNR 165 (249)
T ss_dssp HHHHHHHHHHH-HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHH
T ss_pred hhhhhhhhhhh-hhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccCccc
Confidence 33334455666 6799999999999999885 577999999999999999995 79999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhh
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~ 209 (733)
+++|++||++++|+||+++||||+|+|++++.+++.++|+++++.|+.+++
T Consensus 166 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 216 (249)
T d1szoa_ 166 GRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR 216 (249)
T ss_dssp HHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred eeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999886554
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=8.1e-38 Score=303.88 Aligned_cols=185 Identities=32% Similarity=0.626 Sum_probs=180.9
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
++|+||+|||+|+||++||..++++|++|++||++++.++++.+++.+.+.+.+..+.+++...+..++++..+++++++
T Consensus 2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (186)
T d1wdka3 2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF 81 (186)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~ 465 (733)
.+||+||||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||+|++.+++|||++++.|+
T Consensus 82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~ 161 (186)
T d1wdka3 82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS 161 (186)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCC
Q 004726 466 AQVILDLMTVGKIIKKVPVVVGNCT 490 (733)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v~d~p 490 (733)
+++++.+..|++.+|+.|++++|.|
T Consensus 162 ~~~~~~~~~~~~~lgk~pv~v~d~P 186 (186)
T d1wdka3 162 DLAVATTVAYAKKMGKNPIVVNDCP 186 (186)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccC
Confidence 9999999999999999999999987
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-37 Score=302.99 Aligned_cols=185 Identities=33% Similarity=0.521 Sum_probs=175.5
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCC-----HHHHHHHhhcccccc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-----QDKANNALKMLKGVL 380 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-----~~~~~~~~~~i~~~~ 380 (733)
+.|+||+|||+|+||++||..++++|++|++||++++.++++.+++++.+..+++++... .+..+..++++..++
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 81 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 81 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence 458999999999999999999999999999999999999999999999999999988874 345566778899888
Q ss_pred Cc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe
Q 004726 381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 459 (733)
Q Consensus 381 ~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv 459 (733)
++ +++++||+||||+||++++|+++|+++++.+++++|++||||++++++++..+.+|+||+|+|||||++.+|+|||+
T Consensus 82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv 161 (192)
T d1f0ya2 82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI 161 (192)
T ss_dssp CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEc
Confidence 87 67999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT 490 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~p 490 (733)
+++.|++++++.+.+|++.+|+.||+++|.|
T Consensus 162 ~g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P 192 (192)
T d1f0ya2 162 KTPMTSQKTFESLVDFSKALGKHPVSCKDTP 192 (192)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence 9999999999999999999999999999987
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.92 E-value=4.2e-26 Score=204.32 Aligned_cols=101 Identities=42% Similarity=0.727 Sum_probs=89.8
Q ss_pred CcchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC--CCCcHHHHHHH
Q 004726 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLL 568 (733)
Q Consensus 491 Gfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v 568 (733)
|||+||++.++++||++++++|++|++||+++..+|+|+|||+++|.+|||++.++.+.+++.++++ ..+++++++||
T Consensus 1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~mv 80 (124)
T d1wdka1 1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALY 80 (124)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHHHH
Confidence 8999999999999999999999999999999988999999999999999999999999999988764 34778999999
Q ss_pred HcCCCCcccCccccccCCCCCCC
Q 004726 569 KSGRNGKANGKGLYTYEKGSKPK 591 (733)
Q Consensus 569 ~~g~~G~k~g~Gfy~y~~~~~~~ 591 (733)
++|++|+|||+|||+|+++++..
T Consensus 81 ~~g~lG~Ktg~GFY~y~~~~~~~ 103 (124)
T d1wdka1 81 EAKRLGQKNGKGFYAYEADKKGK 103 (124)
T ss_dssp HTTCCBTTTTBSSSEEC------
T ss_pred HcCCccccCCcEeeEcCCCCCCC
Confidence 99999999999999998654433
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.3e-25 Score=191.41 Aligned_cols=95 Identities=33% Similarity=0.562 Sum_probs=89.5
Q ss_pred CcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC--CCCcHHHHH
Q 004726 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDL 566 (733)
Q Consensus 491 Gfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~ 566 (733)
|||+||++.++++||++++++|+ +|++||.++ .++|+|+|||+++|.+|||++.++++.+.+.++++ ..|++++++
T Consensus 1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~ 80 (99)
T d1f0ya1 1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK 80 (99)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence 89999999999999999999997 999999999 78999999999999999999999999999887663 348899999
Q ss_pred HHHcCCCCcccCccccccC
Q 004726 567 LLKSGRNGKANGKGLYTYE 585 (733)
Q Consensus 567 ~v~~g~~G~k~g~Gfy~y~ 585 (733)
|+++|++|+|||+|||+|+
T Consensus 81 mv~~g~lG~ksg~GfY~Y~ 99 (99)
T d1f0ya1 81 LVAENKFGKKTGEGFYKYK 99 (99)
T ss_dssp HHHTTCCBTTTTBSSSBCC
T ss_pred HHHcCCCcccCCCcccccC
Confidence 9999999999999999994
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.91 E-value=5.7e-25 Score=186.34 Aligned_cols=92 Identities=30% Similarity=0.609 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCC
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS 697 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~ 697 (733)
+++++|+||++++++|||++|++|||+.+++|||.++++|+|||+|+||||+++|.+|+++++++++.+. .++++|+|+
T Consensus 2 ~~d~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~ 80 (95)
T d1wdka2 2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPT 80 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCC
Confidence 6789999999999999999999999998999999999999999999999999999999999999999885 589999999
Q ss_pred HHHHHHHHCCCCc
Q 004726 698 RFLEERATKGIPL 710 (733)
Q Consensus 698 ~~l~~~~~~g~~g 710 (733)
++|++|+++|+.|
T Consensus 81 ~~L~~~~~~g~~F 93 (95)
T d1wdka2 81 AKLREMAKNGQSF 93 (95)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHhCcCC
Confidence 9999999988733
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6e-23 Score=176.99 Aligned_cols=95 Identities=24% Similarity=0.339 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC--CCCCCH
Q 004726 621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSR 698 (733)
Q Consensus 621 ~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~--~~~p~~ 698 (733)
+||+||++.+++|||++|++||++ +|++||.+++.++|||+ |||+++|.+|+|+++++++.+.+..++ +++|++
T Consensus 1 GFi~NRil~~~~~ea~~ll~eG~a-~~~~iD~~~~~~~G~p~---Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~ 76 (99)
T d1f0ya1 1 GFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSP 76 (99)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCH
T ss_pred CeehHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcccCCCC---chHHHHHhhcHHHHHHHHHHHHHhcccccccCCCH
Confidence 478999999999999999999998 89999999999999999 999999999999999999999888764 789999
Q ss_pred HHHHHHHCCCCc--cccceeecC
Q 004726 699 FLEERATKGIPL--VRIIFHRFS 719 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y~ 719 (733)
+|++|+++|++| +|+|||+|.
T Consensus 77 ~l~~mv~~g~lG~ksg~GfY~Y~ 99 (99)
T d1f0ya1 77 SLNKLVAENKFGKKTGEGFYKYK 99 (99)
T ss_dssp HHHHHHHTTCCBTTTTBSSSBCC
T ss_pred HHHHHHHcCCCcccCCCcccccC
Confidence 999999999999 899999995
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.81 E-value=2.1e-20 Score=166.95 Aligned_cols=95 Identities=13% Similarity=0.125 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC--CCCCCH
Q 004726 621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSR 698 (733)
Q Consensus 621 ~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~--~~~p~~ 698 (733)
+||+||++.++++||+++++||+. |++||.++. ++|||+ |||+++|.+|+|+++++++.+.+.+++ .+.|++
T Consensus 1 GFi~NRi~~~~~~ea~~ll~eG~~--~~~ID~a~~-~~G~p~---Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~ 74 (124)
T d1wdka1 1 GFLVNRVLFPYFGGFAKLVSAGVD--FVRIDKVME-KFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRS 74 (124)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHH-HHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCC
T ss_pred CchHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHh-hccCCC---CHHHHHHhcchHHHHHHHHHHHHhcCcccccCcch
Confidence 578999999999999999999974 999999975 899999 999999999999999999999888764 577888
Q ss_pred HHHHHHHCCCCc--cccceeecCCC
Q 004726 699 FLEERATKGIPL--VRIIFHRFSNI 721 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y~~~ 721 (733)
++++|+++|++| +|+|||+|++.
T Consensus 75 ~l~~mv~~g~lG~Ktg~GFY~y~~~ 99 (124)
T d1wdka1 75 AIDALYEAKRLGQKNGKGFYAYEAD 99 (124)
T ss_dssp HHHHHHHTTCCBTTTTBSSSEEC--
T ss_pred HHHHHHHcCCccccCCcEeeEcCCC
Confidence 999999999999 89999999854
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.74 E-value=9.8e-18 Score=158.45 Aligned_cols=153 Identities=17% Similarity=0.177 Sum_probs=118.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||+|||+|.||++||+.|.++|++|++||++++.++++.+ .+.++ ...++.+.+++|
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~~~~ 58 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLVD-----------EAGQDLSLLQTA 58 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGGTTC
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-----------hhccc-----------eeeeeccccccc
Confidence 37999999999999999999999999999999998877532 22211 234556889999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCC------------CCee
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV------------MPLL 456 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~------------~~lv 456 (733)
|+||+|+| +....++++++.+.++++++|++.+|. .............++++.|++.++.. ...+
T Consensus 59 DiIilavp--~~~~~~vl~~l~~~l~~~~iv~~~~s~-~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~ 135 (165)
T d2f1ka2 59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDVASV-KTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY 135 (165)
T ss_dssp SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEECCSC-CHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred ccccccCc--Hhhhhhhhhhhhhhcccccceeecccc-chHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeE
Confidence 99999999 778889999999999999998765544 33322222222347899999765532 2345
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (733)
-+++...++++.++.+.++++.+|.++++|
T Consensus 136 il~~~~~~~~~~~~~v~~l~~~lG~~v~~c 165 (165)
T d2f1ka2 136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165 (165)
T ss_dssp EEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence 577888899999999999999999998764
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.71 E-value=7.1e-18 Score=142.27 Aligned_cols=82 Identities=15% Similarity=0.324 Sum_probs=75.9
Q ss_pred chhhhhHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 004726 493 AVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDL 566 (733)
Q Consensus 493 i~nRl~~~~~~Ea~~l~~~Gv--~~~dID~a~-~~~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l~~ 566 (733)
|+||++.+++|||++++++|+ +++|||.++ .++|||+ |||+++|.+|+|.++++++.+. ++++++.|+++|++
T Consensus 7 IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~~~L~~ 85 (95)
T d1wdka2 7 IINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPTAKLRE 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCCHHHHH
Confidence 889999999999999999996 899999999 9999999 9999999999999999999874 57888889999999
Q ss_pred HHHcCCCCcccCcccc
Q 004726 567 LLKSGRNGKANGKGLY 582 (733)
Q Consensus 567 ~v~~g~~G~k~g~Gfy 582 (733)
|+++ |+|||
T Consensus 86 ~~~~-------g~~Fy 94 (95)
T d1wdka2 86 MAKN-------GQSFF 94 (95)
T ss_dssp HHHT-------TCCSC
T ss_pred HHHh-------CcCCC
Confidence 9855 46999
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.69 E-value=1.1e-16 Score=151.95 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=117.2
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc--c
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~ 383 (733)
|+||+|||+|.||++||..|.++|+ +|++||++++.++.+.+ .+.++ ...++. .
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~ 58 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID-----------EGTTSIAKV 58 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGG
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-----------hhcch-----------hhhhhhhhh
Confidence 5789999999999999999999996 78999999999887633 22221 112222 3
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhcccCCCCcEEEEecCCCCC----------
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAH---------- 451 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~~~~~ig~h~~~p~~---------- 451 (733)
...++|+||.|+| ++...+++.++.+++++++++++.+|+... ..+... .+.+|++.||.....
T Consensus 59 ~~~~~dlIila~p--~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~--~~~~~i~~hPm~G~e~sG~~~a~~~ 134 (171)
T d2g5ca2 59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENI--LGKRFVGGHPIAGTEKSGVEYSLDN 134 (171)
T ss_dssp GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHH--HGGGEECEEEECCCSCCSGGGCCSS
T ss_pred hccccccccccCC--chhhhhhhhhhhccccccccccccccccHHHHHHHHHh--hcccccccccccccccccHHHHHHH
Confidence 3468999999999 888889999999999999999887775443 233332 245899999964331
Q ss_pred --CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004726 452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (733)
Q Consensus 452 --~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (733)
.+..+-++++..++++.++.+++|++.+|.+++.+
T Consensus 135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~M 171 (171)
T d2g5ca2 135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYM 171 (171)
T ss_dssp TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 23445688898999999999999999999988754
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.58 E-value=1.2e-15 Score=143.20 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=105.9
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 388 (733)
||||||+|.||.+||.+|+++||+|++||+++++++...+ .+ ....++. +.+++|
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~-----------~~-------------~~~~~~~~e~~~~~ 57 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQC 57 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHHC
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH-----------hh-------------hhhcccHHHHHhCC
Confidence 7999999999999999999999999999999998776532 11 2233444 678999
Q ss_pred CEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCHHH---HhcccC-CCCcEEEEecCCCC---CCCCeeEEe
Q 004726 389 DMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~-~~~~~ig~h~~~p~---~~~~lveiv 459 (733)
|+||.|||++.+++..++ ..+...++++++|++.++ ..+.. +++.+. ...+|+.......+ ..+.+.-++
T Consensus 58 d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT-~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~ 136 (161)
T d1vpda2 58 DVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSS-IAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV 136 (161)
T ss_dssp SEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred CeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCC-CCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEE
Confidence 999999997777766655 347888899998876444 44432 333332 23344444332111 122334344
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
.| +++.+++++++++.+|++++++|
T Consensus 137 gG---~~~~~~~~~~il~~~~~~i~~~G 161 (161)
T d1vpda2 137 GG---DKAIFDKYYDLMKAMAGSVVHTG 161 (161)
T ss_dssp ES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cC---CHHHHHHHHHHHHHhcCceEECC
Confidence 44 68999999999999999988875
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.57 E-value=1e-14 Score=135.35 Aligned_cols=148 Identities=12% Similarity=0.065 Sum_probs=120.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+||+|||+|.||.+|+..|.++| ++|.++|+++++++...+. ..+...++.+.+.+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~-----------------------~~~~~~~~~~~v~~ 57 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE-----------------------LGVETSATLPELHS 57 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH-----------------------TCCEEESSCCCCCT
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh-----------------------cccccccccccccc
Confidence 37999999999999999998887 8999999999987764321 13455667778899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-cCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSA 466 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~~~~t~~ 466 (733)
||+||.||+ ++...++++++ .+.+.+++|..++.+++.+.+.+....+++..+|+.|......+..+ .+...++
T Consensus 58 ~Div~lavk--P~~~~~v~~~l---~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~ 132 (152)
T d1yqga2 58 DDVLILAVK--PQDMEAACKNI---RTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE 132 (152)
T ss_dssp TSEEEECSC--HHHHHHHHTTC---CCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred cceEEEecC--HHHHHHhHHHH---hhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence 999999997 66555555544 34577888999999999999988777789999999999888776654 5666789
Q ss_pred HHHHHHHHHHHHcCCeeE
Q 004726 467 QVILDLMTVGKIIKKVPV 484 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v 484 (733)
+..+.+.+++..+|+...
T Consensus 133 ~~~~~v~~l~~~~G~~~~ 150 (152)
T d1yqga2 133 TDRRIADRIMKSVGLTVW 150 (152)
T ss_dssp HHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHhCCCEEE
Confidence 999999999999997543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.57 E-value=4.7e-15 Score=137.66 Aligned_cols=142 Identities=15% Similarity=0.100 Sum_probs=109.2
Q ss_pred CCCCCCcceEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 302 GLKPRGVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 302 ~~~~~~~~kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
.++...|+||+||| +|.||++||..|.++||+|++||++++....
T Consensus 3 ~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~---------------------------------- 48 (152)
T d2pv7a2 3 KTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE---------------------------------- 48 (152)
T ss_dssp CCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH----------------------------------
T ss_pred cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc----------------------------------
Confidence 34566789999999 8999999999999999999999998764322
Q ss_pred CccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhcccCCCCcEEEEecCCCCCCC----C
Q 004726 381 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAHVM----P 454 (733)
Q Consensus 381 ~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~~~~~ig~h~~~p~~~~----~ 454 (733)
+.++++|+++.++| ......++.++.+.+++++++++.+|+.+. ..+.+. .+.+|++.||...+... .
T Consensus 49 --~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g~ 122 (152)
T d2pv7a2 49 --SILANADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQ 122 (152)
T ss_dssp --HHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTC
T ss_pred --hhhhhccccccccc--hhhheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCCc
Confidence 23568999999999 667778889999999999999876654322 223232 35689999997766443 3
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~ 485 (733)
.+.++++. +++.++++.++++.+|.+++.
T Consensus 123 ~~v~~~g~--~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 123 VVVRCDGR--FPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp EEEEEEEE--CGGGTHHHHHHHHHTTCEEEE
T ss_pred EEEEecCC--CHHHHHHHHHHHHHhCCEEEe
Confidence 34444443 677899999999999998875
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.54 E-value=1.6e-14 Score=133.76 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=115.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.+|+..|.++|++|+++++++++.+...+. . .+..+.+. +.+++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~----------------------~-g~~~~~~~~~~~~~ 57 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------------------L-ALPYAMSHQDLIDQ 57 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------------------H-TCCBCSSHHHHHHT
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccc----------------------c-ceeeechhhhhhhc
Confidence 379999999999999999999999999999999887654221 0 23334444 66889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-EecCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTERTSA 466 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~~~~t~~ 466 (733)
||+||.||+ ++...++ .+.++++.+|+|.++++.++.+.+.+....+++.++|+.|........ +..+..+++
T Consensus 58 ~dvIilavk--p~~~~~v----l~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~ 131 (152)
T d2ahra2 58 VDLVILGIK--PQLFETV----LKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ 131 (152)
T ss_dssp CSEEEECSC--GGGHHHH----HTTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred cceeeeecc--hHhHHHH----hhhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence 999999997 5544444 445677888889999999999998887777899999987776654444 556777899
Q ss_pred HHHHHHHHHHHHcCCe
Q 004726 467 QVILDLMTVGKIIKKV 482 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~ 482 (733)
+..+.++++++.+|+.
T Consensus 132 ~~~~~v~~l~~~~G~~ 147 (152)
T d2ahra2 132 ELQARVRDLTDSFGST 147 (152)
T ss_dssp HHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHhCCCE
Confidence 9999999999999974
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=1.1e-15 Score=150.56 Aligned_cols=203 Identities=14% Similarity=0.110 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCc--CcHHHHH------HHHHCCCeeEEEeCChHHH-HHH
Q 004726 277 DTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL--MGSGIAT------AHILNNIYVVLKEVNSEYL-LKG 347 (733)
Q Consensus 277 ~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kI~VIG~G~--mG~~iA~------~l~~~G~~V~~~d~~~e~~-~~~ 347 (733)
.+++.++..|..-....+..+.+. ....+++.++|+|+ ||.+|++ +|++.|+.|++.|.+++.. +.+
T Consensus 13 ~~~a~gi~~f~~~~~~~~~~~~~~----~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~ 88 (242)
T d2b0ja2 13 THAAAGITNFMRACEVAKEVGKPE----IALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAH 88 (242)
T ss_dssp HHHHHSSCCCHHHHHHHHHHTCGG----GGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHH
T ss_pred chhhhccHHHHHHHhhhccCCCCc----cceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHH
Confidence 455667777766544444333322 12245688999997 9999988 7899999999999998764 333
Q ss_pred HH--------HHHHHHHHhHhcCCCCHHH----HHHHhhccccccCc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCC
Q 004726 348 IK--------TIEANVRGLVTRGKLTQDK----ANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACP 414 (733)
Q Consensus 348 ~~--------~i~~~l~~~~~~g~~~~~~----~~~~~~~i~~~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~ 414 (733)
.. .++..+.+..+....++.. .......+.+++|. +++++||+||+|+|+. +.+.++++++.+.++
T Consensus 89 ~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~ 167 (242)
T d2b0ja2 89 LSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIP 167 (242)
T ss_dssp HTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSC
T ss_pred hcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCC
Confidence 22 2223333333333211110 00001235556666 8899999999999955 667888999999999
Q ss_pred CCeEEEecCCCCCHH---HHhcccC-CCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004726 415 PHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (733)
Q Consensus 415 ~~~ii~s~tS~~~~~---~l~~~~~-~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (733)
+++||++ +||+++. ++.+.+. ...++++.||+++|.......++.+ .++++.++++.++++.+|+.++++
T Consensus 168 ~g~Iiid-~STi~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 168 EGAIVTH-ACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp TTCEEEE-CSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCcEEEe-cCCCcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence 9999865 4444444 3444444 3568999999998877666655544 579999999999999999998876
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.49 E-value=5.6e-14 Score=131.65 Aligned_cols=152 Identities=15% Similarity=0.142 Sum_probs=104.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
|+||+|||+|.||++||.+|+++||+|.+||+++++.+...+ .+ .....+..+.+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~-----------~~------------~~~~~~~~e~~~~ 57 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------AG------------ASAARSARDAVQG 57 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------TT------------CEECSSHHHHHTS
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh-----------hh------------ccccchhhhhccc
Confidence 578999999999999999999999999999999988776422 11 1222222267899
Q ss_pred CCEEEEeccCChHHHHHHHH---HHHHhCCCCeEEEecCCCCCHHH---HhcccC-CCCcEEEEecCCCC---CCCCeeE
Q 004726 388 VDMVIEAVIESVPLKQKIFS---ELEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFSPA---HVMPLLE 457 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~---~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~-~~~~~ig~h~~~p~---~~~~lve 457 (733)
+|+|+.|||.+.... .++. .+...+.++.+|++ +|+..++. +.+.+. ...+|+..+....| ..+.+.-
T Consensus 58 ~diii~~v~~~~~~~-~v~~~~~~~~~~l~~g~iiid-~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~ 135 (162)
T d3cuma2 58 ADVVISMLPASQHVE-GLYLDDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF 135 (162)
T ss_dssp CSEEEECCSCHHHHH-HHHHSTTCHHHHSCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred cCeeeecccchhhHH-HHHhccccccccCCCCCEEEE-CCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence 999999999665554 4443 36777888888864 44544443 333332 33355544332222 2333444
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
++.| +++++++++++++.+|+.++++|
T Consensus 136 ~~gG---~~~~~~~~~~il~~~~~~v~~~G 162 (162)
T d3cuma2 136 MVGG---DAEALEKARPLFEAMGRNIFHAG 162 (162)
T ss_dssp EEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EecC---CHHHHHHHHHHHHHHcCccEECc
Confidence 4454 78999999999999999988875
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.25 E-value=4.7e-13 Score=127.07 Aligned_cols=155 Identities=10% Similarity=-0.008 Sum_probs=98.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
.+|+|||+|.||.+||.+|+++||+|++|||++++++...+ .+.... .. .......+. +.+.+
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~~----~~-~~a~~~~~~~~~~~~ 66 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKGT----KV-LGAHSLEEMVSKLKK 66 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTTS----SC-EECSSHHHHHHHBCS
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------hccccc----cc-cchhhhhhhhhhhcc
Confidence 47999999999999999999999999999999999876532 111000 00 000011112 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEEecCCCC---CCCCeeEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRT 461 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~-~~~~~ig~h~~~p~---~~~~lveiv~~ 461 (733)
+|.+|.++|....+. +++..+...++++++++..+++.+.. ++++.+. ...+++.......+ ..+. .-++.|
T Consensus 67 ~~~ii~~~~~~~~v~-~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG 144 (176)
T d2pgda2 67 PRRIILLVKAGQAVD-NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGG 144 (176)
T ss_dssp SCEEEECSCTTHHHH-HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEE
T ss_pred cceEEEecCchHHHH-HHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCC
Confidence 999999999765554 46788888999999887544433332 2222222 23344443221111 1111 223333
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeE
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPV 484 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v 484 (733)
+++++++++++++.+++++.
T Consensus 145 ---~~~~~~~~~~il~~~~~kv~ 164 (176)
T d2pgda2 145 ---NKEAWPHIKAIFQGIAAKVG 164 (176)
T ss_dssp ---CTTTHHHHHHHHHHHSCBCT
T ss_pred ---CHHHHHHHHHHHHHHhcccC
Confidence 67889999999999998753
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=2.9e-12 Score=118.59 Aligned_cols=143 Identities=8% Similarity=-0.070 Sum_probs=91.4
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCE
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (733)
|+|||+|.||.+|+..|.+.++.+.+|+|+++++++..+. + .....+..+.++++|+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~-----------~------------~~~~~~~~~~~~~~Di 58 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEV-----------Y------------GGKAATLEKHPELNGV 58 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHH-----------T------------CCCCCSSCCCCC---C
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhc-----------c------------cccccchhhhhccCcE
Confidence 7999999999999999877555567999999998775331 1 1223444478899999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCC-------eeEEecCCC
Q 004726 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-------LLEIVRTER 463 (733)
Q Consensus 391 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-------lveiv~~~~ 463 (733)
||.|||++ ...+++.++ ..++.++++.+++.+...+.. ....+.||..++.... .+-+..+
T Consensus 59 Vil~v~d~--~i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 126 (153)
T d2i76a2 59 VFVIVPDR--YIKTVANHL---NLGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGLE-- 126 (153)
T ss_dssp EEECSCTT--THHHHHTTT---CCSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEEC--
T ss_pred EEEeccch--hhhHHHhhh---cccceeeeecccchhhhhhhh-----hccccceeeeecccccchhhhccCcEEEEe--
Confidence 99999954 334454443 246788877666677654432 2345778755432111 1111112
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
.+++.++.++++++.+|.+++++.+
T Consensus 127 gd~~~~~~~~~l~~~lG~~~~~i~~ 151 (153)
T d2i76a2 127 GDERGLPIVKKIAEEISGKYFVIPS 151 (153)
T ss_dssp CCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred CCHHHHHHHHHHHHHHCCcEEEeCC
Confidence 3678899999999999999998854
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.15 E-value=3e-11 Score=111.95 Aligned_cols=144 Identities=13% Similarity=0.113 Sum_probs=99.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||.+||.+|+++|+.| +|+++.++.+...+. ........+.+.++|
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ 56 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEE------------------------FGSEAVPLERVAEAR 56 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHH------------------------HCCEECCGGGGGGCS
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHH------------------------cCCccccccccccee
Confidence 7999999999999999999999866 677777765543221 011233346778899
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH---HhcccCCCCcEEEEecCCCCC--------CCCeeEE
Q 004726 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGAHFFSPAH--------VMPLLEI 458 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~~~ig~h~~~p~~--------~~~lvei 458 (733)
++|.++|.+.++. .....+.....++.+++. +||..++. +++.+.. + +.+|.+.|- .+.+.-+
T Consensus 57 ~~i~~~~~~~~v~-~~~~~l~~~~~~~~~iid-~sT~~p~~~~~~~~~~~~--~--gi~~ldapVsGg~~~A~~G~L~~~ 130 (156)
T d2cvza2 57 VIFTCLPTTREVY-EVAEALYPYLREGTYWVD-ATSGEPEASRRLAERLRE--K--GVTYLDAPVSGGTSGAEAGTLTVM 130 (156)
T ss_dssp EEEECCSSHHHHH-HHHHHHTTTCCTTEEEEE-CSCCCHHHHHHHHHHHHT--T--TEEEEECCEESHHHHHHHTCEEEE
T ss_pred EEEecccchhhhh-hhhccccccccccccccc-cccCCHHHHHHHHHHHHH--c--CCeEEeccccCchhhhccCCEEEE
Confidence 9999999766554 445778888888888764 55555543 3333322 1 455554442 2334545
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
+.| ++++++++++++ .++++++++++
T Consensus 131 vgG---~~~~~~~~~p~L-~~~~~v~~~GP 156 (156)
T d2cvza2 131 LGG---PEEAVERVRPFL-AYAKKVVHVGP 156 (156)
T ss_dssp EES---CHHHHHHHGGGC-TTEEEEEEEES
T ss_pred EeC---CHHHHHHHHHHH-HhcCcCEEeCc
Confidence 555 799999999999 58999998864
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.13 E-value=1.5e-11 Score=113.52 Aligned_cols=145 Identities=13% Similarity=0.055 Sum_probs=91.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 388 (733)
||+|||+|.||.+||..|+++|++|+++|++++...+.... .+....+. +.+++|
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~------------------------~~~~~~~~~e~~~~~ 57 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR------------------------TVGVTETSEEDVYSC 57 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH------------------------HHTCEECCHHHHHTS
T ss_pred EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh------------------------cccccccHHHHHhhc
Confidence 79999999999999999999999999999887765543210 01112223 678999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC---HHHHhcccCCCCcEEEEecCCCCCC--CCeeEEecCCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID---LNIVGEKTSSQDRIIGAHFFSPAHV--MPLLEIVRTER 463 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---~~~l~~~~~~~~~~ig~h~~~p~~~--~~lveiv~~~~ 463 (733)
|+||.|||.+.. .++..++.... +.++++ .|+.. ...+++.+.. .+++....+.++.. ....-++.|+
T Consensus 58 diIi~~v~~~~~--~~~~~~~~~~~--~~~~id-~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G~- 130 (152)
T d1i36a2 58 PVVISAVTPGVA--LGAARRAGRHV--RGIYVD-INNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASGR- 130 (152)
T ss_dssp SEEEECSCGGGH--HHHHHHHHTTC--CSEEEE-CSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEEST-
T ss_pred CeEEEEecCchH--HHHHHhhcccC--Cceeec-cCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEECC-
Confidence 999999995543 34455555544 334443 33333 3355555433 35666665544321 1112245555
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVGNCT 490 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~d~p 490 (733)
+.+.++ .++.+|..+.++++.|
T Consensus 131 -~~~~~~----~l~~~g~~i~~~G~~P 152 (152)
T d1i36a2 131 -DAEEFM----KLNRYGLNIEVRGREP 152 (152)
T ss_dssp -THHHHH----GGGGGTCEEEECSSST
T ss_pred -CHHHHH----HHHHcCCeeeEcCCCC
Confidence 344443 3678899988888766
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.07 E-value=1.1e-09 Score=105.58 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=96.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH--------HHHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
+||+|||+|.+|.++|.+|+++|++|++||.|++.++...+. +...+... ...+++..++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~------------~~~~~~~~~~ 68 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG------------RQTGRLSGTT 68 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHH------------HHTTCEEEES
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhh------------hcccccccCC
Confidence 379999999999999999999999999999999988764311 01111111 1223566677
Q ss_pred Cc-cccCCCCEEEEeccCC--------hHHHHHHHHHHHH---hCCCCeEEEecCCCCCHHHHhcc--------cC--CC
Q 004726 381 DY-SEFKDVDMVIEAVIES--------VPLKQKIFSELEK---ACPPHCILATNTSTIDLNIVGEK--------TS--SQ 438 (733)
Q Consensus 381 ~~-~~l~~aDlVI~avpe~--------~~~k~~v~~~l~~---~~~~~~ii~s~tS~~~~~~l~~~--------~~--~~ 438 (733)
+. +++.+||+++.|||.+ ......+.+.+.. ...++.+|+. .||+++...... .. ..
T Consensus 69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii-~STv~pGtt~~~~~~~l~~~~~~~~~ 147 (202)
T d1mv8a2 69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAG 147 (202)
T ss_dssp CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBT
T ss_pred CHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceee-ccccCCcchhhhhhhhhhcccccccc
Confidence 76 6689999999999863 3334444444443 3446666654 444443322211 11 11
Q ss_pred CcE-EEEecCCCCCCCCe----------eEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 004726 439 DRI-IGAHFFSPAHVMPL----------LEIVRTERTSAQVILDLMTVGKIIKKVPVV 485 (733)
Q Consensus 439 ~~~-ig~h~~~p~~~~~l----------veiv~~~~t~~e~~~~~~~l~~~lG~~~v~ 485 (733)
..| +.. +|-...+. .-|+.+ .+++..+.++++++.+....+.
T Consensus 148 ~~~~~~~---~PE~~~~G~a~~d~~~~~~iViG~--~~~~~~~~~~~ly~~i~~~ii~ 200 (202)
T d1mv8a2 148 VDFGVGT---NPEFLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPIIR 200 (202)
T ss_dssp TTBEEEE---CCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEEE
T ss_pred ccccchh---hhhhhcccchhhhhcCCCeEEEEe--CCHHHHHHHHHHHHhcCCCeEe
Confidence 112 222 22222110 014444 3789999999999998876554
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.06 E-value=1.7e-10 Score=109.16 Aligned_cols=153 Identities=13% Similarity=0.057 Sum_probs=99.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC----cccc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD----YSEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~----~~~l 385 (733)
||||||+|.||.+||.+|+++||+|++||+++++.+...+ .+...... .......+ ...+
T Consensus 3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~-----------~~~~~~~~-----~~~~~~~~~~~~~~~~ 66 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMK-----------ANASAPFA-----GNLKAFETMEAFAASL 66 (178)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HTTTSTTG-----GGEEECSCHHHHHHHB
T ss_pred EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cCCccccc-----cchhhhhhhhHHHHhc
Confidence 7999999999999999999999999999999999877533 12111000 00111111 1346
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHhccc-CCCCcEEEEecCCCCC---CCCeeEE
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKT-SSQDRIIGAHFFSPAH---VMPLLEI 458 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~-~~~~~~ig~h~~~p~~---~~~lvei 458 (733)
..++.++++++....+. .++..+...+.++++++..+ +..+. .+.+.+ ...-.++.......+. .+ ..-+
T Consensus 67 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iii~~s-t~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g-~~~m 143 (178)
T d1pgja2 67 KKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTG-NAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKG-PAFF 143 (178)
T ss_dssp CSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECC-CCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHC-CEEE
T ss_pred ccceEEEEeecCcchhh-hhhhhhhhhccccceecccC-ccchhHHHHHHHHHhhcceeEecccccCCcchhcCC-cEEE
Confidence 77888999988655554 45577778888888876544 44433 333333 2334566554433221 11 1224
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKVPV 484 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v 484 (733)
+.| +++++++++++++.+++++.
T Consensus 144 vgG---~~~~~~~v~pil~~~~~~~~ 166 (178)
T d1pgja2 144 PGG---TLSVWEEIRPIVEAAAAKAD 166 (178)
T ss_dssp EEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred eeC---CHHHHHHHHHHHHHHhcccc
Confidence 444 78999999999999998876
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.01 E-value=1.2e-10 Score=110.67 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=73.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHh-cCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~-~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
+||+|||+|.||.++|..|+++||+|++||++++.++...+.- .... ..... ........+++. +.++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~e~~~ 71 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG-----AIIAEGPGLA-----GTAHPDLLTSDIGLAVK 71 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT-----SEEEESSSCC-----EEECCSEEESCHHHHHT
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-----CCchhhhhhh-----hhhhhhhhhhhhHhHhc
Confidence 5899999999999999999999999999999999877653210 0000 00000 000112234444 6789
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+||+||.|+| ......+++++.++++++++|+.
T Consensus 72 ~aD~iii~v~--~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 72 DADVILIVVP--AIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp TCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred CCCEEEEEEc--hhHHHHHHHHhhhccCCCCEEEE
Confidence 9999999999 55567899999999999997764
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.00 E-value=8.2e-11 Score=112.29 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=79.6
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCc-c
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~ 383 (733)
+.|+||+|||+|.||.++|..|+++|++|++|+++++.++...+. ..+.. +... .....+.+++++ +
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~--------~~n~~yl~~~---~l~~~i~~t~~l~~ 73 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK--------RENVLFLKGV---QLASNITFTSDVEK 73 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH--------TBCTTTSTTC---BCCTTEEEESCHHH
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc--------cccccccccc---ccccccccchhhhh
Confidence 457899999999999999999999999999999999987764321 11110 1100 112457778887 6
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHh-----CCCCeEEEecCCCCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-----CPPHCILATNTSTID 427 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~-----~~~~~ii~s~tS~~~ 427 (733)
++++||+||.||| .+..+.+++++.+. .+++.++++.+.++.
T Consensus 74 a~~~ad~iiiavP--s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie 120 (189)
T d1n1ea2 74 AYNGAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE 120 (189)
T ss_dssp HHTTCSCEEECSC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred ccCCCCEEEEcCc--HHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCc
Confidence 6899999999999 88888888887543 345666666666553
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.82 E-value=1.1e-09 Score=103.74 Aligned_cols=100 Identities=15% Similarity=0.058 Sum_probs=70.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
+||+|||+|.||.++|..|+++|++|++|.|+. +.++...+ ......... ......+..+++. +++
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~--------~~~~~~~~~---~~~~~~i~~~~~~~~~~ 69 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA--------GREHPRLGV---KLNGVEIFWPEQLEKCL 69 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT--------TCCBTTTTB---CCCSEEEECGGGHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhh--------hhhhhhhcc---hhccccccccccHHHHH
Confidence 489999999999999999999999999998853 33333211 111110000 0001234556666 678
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+++|+||.||| ....+.+++++.+++++..++..
T Consensus 70 ~~ad~Ii~avp--s~~~~~~~~~l~~~l~~~~ii~~ 103 (180)
T d1txga2 70 ENAEVVLLGVS--TDGVLPVMSRILPYLKDQYIVLI 103 (180)
T ss_dssp TTCSEEEECSC--GGGHHHHHHHHTTTCCSCEEEEC
T ss_pred hccchhhcccc--hhhhHHHHHhhccccccceeccc
Confidence 99999999999 88889999999999988776653
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.58 E-value=3.3e-08 Score=89.45 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=76.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|.++|..|+..|. +|+++|+++++++.-...+... ....+ .....+.++++++
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a---~~~~~-----------~~~~~~~d~~~~~ 71 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA---QAFTA-----------PKKIYSGEYSDCK 71 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG---GGGSC-----------CCEEEECCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc---ccccC-----------CceEeeccHHHhc
Confidence 589999999999999999999884 8999999998755322111110 01111 1234466888999
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE-ecCCCCCHHHHhcccCC-CCcEEEE
Q 004726 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA-TNTSTIDLNIVGEKTSS-QDRIIGA 444 (733)
Q Consensus 387 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~-s~tS~~~~~~l~~~~~~-~~~~ig~ 444 (733)
+||+||.+... +..+.+++..++.++++...++. ||........+.+.... +.|++|+
T Consensus 72 ~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p~~rViG~ 145 (146)
T d1ez4a1 72 DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS 145 (146)
T ss_dssp TCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence 99999998731 24466677777888775554332 32221111223333333 4577764
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.57 E-value=3.4e-08 Score=89.76 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=68.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|.++|..++..|+ +++++|++++.++.-...+... ....+ ......+.++++++
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~---~~~~~----------~~~~~~~~d~~~l~ 73 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG---KVFAP----------KPVDIWHGDYDDCR 73 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH---TTSSS----------SCCEEEECCGGGTT
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhC---ccccC----------CCeEEEECCHHHhc
Confidence 589999999999999999999886 8999999998865432222110 00000 01223356779999
Q ss_pred CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEE
Q 004726 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 387 ~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii 419 (733)
+||+||.+.. .+.++.+++.+++.++++...++
T Consensus 74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~i 120 (148)
T d1ldna1 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFL 120 (148)
T ss_dssp TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEE
Confidence 9999998873 14567777788888887655433
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.55 E-value=6.2e-08 Score=87.43 Aligned_cols=120 Identities=19% Similarity=0.240 Sum_probs=77.4
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.+|.++|..++..|. +++++|++++.++.....+...... ......+..+++++++++
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~------------~~~~~~i~~~~~~~~~~d 69 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPV------------GLFDTKVTGSNDYADTAN 69 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHH------------HTCCCEEEEESCGGGGTT
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccch------------hcccceEEecCCHHHhcC
Confidence 79999999999999999999984 9999999998766432222111000 001123445677889999
Q ss_pred CCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc----ccC-CCCcEEEE
Q 004726 388 VDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE----KTS-SQDRIIGA 444 (733)
Q Consensus 388 aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~----~~~-~~~~~ig~ 444 (733)
||+||.+. |. +..+.+++.+.+.++++. ++++.. |-|+..+.. ... .+.|++|+
T Consensus 70 advvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~-aivivv--tNPvd~~~~~~~~~sg~p~~rviG~ 142 (142)
T d1guza1 70 SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKN-PIIIVV--SNPLDIMTHVAWVRSGLPKERVIGM 142 (142)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSS-CEEEEC--CSSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred CeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCC-eEEEEe--cCChHHHHHHHHHHhCCChHhEeeC
Confidence 99999996 21 344566777788888754 454332 234443332 222 34577774
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.53 E-value=1.5e-07 Score=84.59 Aligned_cols=121 Identities=16% Similarity=0.295 Sum_probs=77.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|.++|..++..|. +++++|++++.++.-.-.+...... .+ ....+..+.++++++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~---~~---------~~~~i~~~~d~~~~~ 68 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG---ID---------KYPKIVGGADYSLLK 68 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHT---TT---------CCCEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccc---cC---------CCCccccCCCHHHhc
Confidence 389999999999999999998885 7999999998865422222211110 00 012355567889999
Q ss_pred CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHH----hcccC-CCCcEEEE
Q 004726 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTS-SQDRIIGA 444 (733)
Q Consensus 387 ~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l----~~~~~-~~~~~ig~ 444 (733)
+||+||.+.. .+..+.+++..++.++.+ +++++..|. |+..+ .+... .+.|++|+
T Consensus 69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p-~aivivvtN--PvD~~t~~~~k~sg~p~~rViG~ 142 (142)
T d1ojua1 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTN--PMDVMTYIMWKESGKPRNEVFGM 142 (142)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSS--SHHHHHHHHHHHSCCCTTSEEEC
T ss_pred cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCC-CcEEEEecC--ChHHHHHHHHHHHCCChhcEecC
Confidence 9999998873 133455556666777764 555554333 33322 22333 35677774
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=1.3e-08 Score=94.46 Aligned_cols=104 Identities=12% Similarity=-0.055 Sum_probs=72.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||+|||+|.||+.+|..|+++|++|++++|+++..+.. ...+.-. ........+++.+.+.++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~~~ 64 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETDG-----SIFNESLTANDPDFLATS 64 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTTS-----CEEEEEEEESCHHHHHTC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh-----------ccccCCc-----cccccccccchhhhhccc
Confidence 489999999999999999999999999999998653321 0001000 000111223334667899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI 430 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~ 430 (733)
|+||.+++ ..-...+++.+.+.+.++++|++...++...+
T Consensus 65 D~iii~vk--a~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~ 104 (167)
T d1ks9a2 65 DLLLVTLK--AWQVSDAVKSLASTLPVTTPILLIHNGMGTIE 104 (167)
T ss_dssp SEEEECSC--GGGHHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred ceEEEeec--ccchHHHHHhhccccCcccEEeeccCcccHHH
Confidence 99999998 45556778889999998888877666654443
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.48 E-value=1.4e-07 Score=84.87 Aligned_cols=120 Identities=25% Similarity=0.326 Sum_probs=78.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.||+|||+|.+|+++|..++..|. +++++|++++.++.-...+... ..-.+ ...+..++++++++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a---~~~~~----------~~~i~~~~~~~~~~ 68 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG---SSFYP----------TVSIDGSDDPEICR 68 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHT---GGGST----------TCEEEEESCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhc---cccCC----------CceeecCCCHHHhh
Confidence 489999999999999999999987 8999999998764322212111 00000 02344566788899
Q ss_pred CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh----cccC-CCCcEEEE
Q 004726 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----EKTS-SQDRIIGA 444 (733)
Q Consensus 387 ~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~-~~~~~ig~ 444 (733)
+||+||.+.- .+.++.+++..++.++.+...++ ..| -|+..+. +... .+.|++|+
T Consensus 69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~i-vvt--NPvDvmt~~~~~~sg~p~~rViG~ 142 (143)
T d1llda1 69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM-LIT--NPVDIATHVAQKLTGLPENQIFGS 142 (143)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEE-ECC--SSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEE-EeC--CchHHHHHHHHHHHCCChhhccCC
Confidence 9999999872 25567777778888887655433 222 3333222 2233 35677774
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.43 E-value=2e-07 Score=83.88 Aligned_cols=100 Identities=14% Similarity=0.226 Sum_probs=68.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+||+|||+|.+|.++|..++..+. +++++|++++.++.....+.... ........+..+.+++++++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~------------~~~~~~~~i~~~~d~~~~~~ 69 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEAS------------PIEGFDVRVTGTNNYADTAN 69 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTH------------HHHTCCCCEEEESCGGGGTT
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccc------------cccCCCCEEEecCcHHHhcC
Confidence 589999999999999999998886 99999999987654322221110 00111123555778899999
Q ss_pred CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 388 aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+|+||.+... +..+.+++..++.++++.. +++.
T Consensus 70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~a-iviv 116 (142)
T d1uxja1 70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNA-VIIM 116 (142)
T ss_dssp CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTC-EEEE
T ss_pred CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCc-eEEE
Confidence 9999999831 2345566667787776554 4443
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.41 E-value=4.6e-07 Score=81.67 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=66.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|+++|..++..|. +++++|+++++++.....+.... ...+ ......+.++++++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~---~~~~----------~~~~~~~~d~~~l~ 68 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM---ANLE----------AHGNIVINDWAALA 68 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---GGSS----------SCCEEEESCGGGGT
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc---cccC----------CccceeccCHHHhc
Confidence 699999999999999999998875 89999999987654322222110 0111 01122356778999
Q ss_pred CCCEEEEeccC------------------ChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 387 DVDMVIEAVIE------------------SVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 387 ~aDlVI~avpe------------------~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
+||+||.+... +..+.+++.+.+.++++ +++++..
T Consensus 69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p-~aivivv 121 (146)
T d1hyha1 69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVI 121 (146)
T ss_dssp TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEEC
T ss_pred cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCC-CeEEEEe
Confidence 99999988531 23445566666777664 5555433
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.39 E-value=3.7e-07 Score=83.38 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=68.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|+++|..++..|+ +++++|++++.++.-...+.. .....+ ...+....++++++
T Consensus 21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h---~~~~~~----------~~~~~~~~d~~~~~ 87 (160)
T d1i0za1 21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQH---GSLFLQ----------TPKIVADKDYSVTA 87 (160)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHH---TGGGCC----------CSEEEECSSGGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhc---cccccC----------CCeEEeccchhhcc
Confidence 599999999999999999999997 899999998876532222211 000001 01233456778999
Q ss_pred CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEE
Q 004726 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 387 ~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii 419 (733)
+||+||.+.- .+..+.+++..++.+..++..++
T Consensus 88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiii 134 (160)
T d1i0za1 88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIII 134 (160)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 9999998772 14456667777888876555443
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.38 E-value=2.8e-07 Score=82.68 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=66.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.||+|||+|.+|.++|..++..+. +++++|++++.++.....+.... .-.. .....+.++++++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~---~~~~-----------~~~~~~~~~~~~~ 66 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT---PFTR-----------RANIYAGDYADLK 66 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---GGSC-----------CCEEEECCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccc---cccc-----------cccccCCcHHHhc
Confidence 389999999999999999998875 89999999987664322221110 0001 1122345678899
Q ss_pred CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEE
Q 004726 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 387 ~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii 419 (733)
+||+||.+.- .+..+.+++.+.+.++++...++
T Consensus 67 ~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivi 113 (140)
T d1a5za1 67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVI 113 (140)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEE
Confidence 9999999872 14456667777888887654433
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.37 E-value=2.9e-07 Score=83.96 Aligned_cols=102 Identities=22% Similarity=0.300 Sum_probs=68.2
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
++-+||+|||+|.+|.++|..++..++ +++++|++++.++.....+...... .... ..+..++++ +
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~-~~~~-----------~~~~~~~~~~~ 72 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSV-VDTN-----------VSVRAEYSYEA 72 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHH-TTCC-----------CCEEEECSHHH
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccc-cCCe-----------eEEeccCchhh
Confidence 345799999999999999999988886 8999999998766543333221110 0100 123334454 5
Q ss_pred ccCCCCEEEEeccC-------------------ChHHHHHHHHHHHHhCCCCeEE
Q 004726 384 EFKDVDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 384 ~l~~aDlVI~avpe-------------------~~~~k~~v~~~l~~~~~~~~ii 419 (733)
++++||+||.+... +..+.+++.+++.+++++..++
T Consensus 73 ~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aivi 127 (154)
T d1pzga1 73 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127 (154)
T ss_dssp HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred hhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEE
Confidence 78999999998721 2336677777888887655443
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.27 E-value=7.3e-07 Score=84.89 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=68.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH----HHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
+||+|||+|.+|.++|..++ .|++|++||.+++.++...+.. +..++.+.+.. ...+..+++. .
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~----------~~~~~~~~~~~~ 69 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK----------QLSIKATLDSKA 69 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS----------CCCEEEESCHHH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhh----------hhhhhccchhhh
Confidence 37999999999999998876 6999999999999887753211 11111111111 1123333333 5
Q ss_pred ccCCCCEEEEeccCC---------hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc
Q 004726 384 EFKDVDMVIEAVIES---------VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE 433 (733)
Q Consensus 384 ~l~~aDlVI~avpe~---------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~ 433 (733)
...++|+++.|+|.+ ........+.+... .++.+++. .|+.++....+
T Consensus 70 ~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii-~Stv~pgt~~~ 126 (196)
T d1dlja2 70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLII-KSTIPIGFITE 126 (196)
T ss_dssp HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEE-CSCCCTTHHHH
T ss_pred hhhccccccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEe-eeecCceeeee
Confidence 578999999999853 33334444555544 44555543 55555554443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.23 E-value=2.4e-07 Score=83.21 Aligned_cols=118 Identities=21% Similarity=0.311 Sum_probs=70.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhc-cccccCcccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM-LKGVLDYSEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~l 385 (733)
+||+|||+|.+|.++|..++..|. +++++|++++.++.-... +.+... .... ...+.+++++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D--------l~~~~~-------~~~~~~~~~~~~~~~ 66 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD--------INHGLP-------FMGQMSLYAGDYSDV 66 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH--------HTTSCC-------CTTCEEEC--CGGGG
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee--------eccCcc-------cCCCeeEeeCcHHHh
Confidence 489999999999999999999986 899999999865432111 111100 0011 1224467889
Q ss_pred CCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHH----hcccC-CCCcEEEE
Q 004726 386 KDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTS-SQDRIIGA 444 (733)
Q Consensus 386 ~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l----~~~~~-~~~~~ig~ 444 (733)
++||+||.+.. .+..+.+++.+++.++.++. +++..| -|+..+ .+... .+.|++|+
T Consensus 67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~a-i~ivvt--NPvdv~t~~~~k~sg~p~~rViG~ 141 (142)
T d1y6ja1 67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG-VILVVS--NPVDIITYMIQKWSGLPVGKVIGS 141 (142)
T ss_dssp TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSC-EEEECS--SSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCc-eEEEec--ChHHHHHHHHHHHHCCCccceecC
Confidence 99999999852 13445666667788877655 443322 233322 22333 34577774
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.21 E-value=1.3e-06 Score=78.48 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=65.4
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHH--HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
||+|||+ |.+|.++|..++..|. +++++|++++. ++.....+... ......-. .-.+..+.++++
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~---~~~~~~~~-------~~~~~~~~d~~~ 71 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDA---LAGTRSDA-------NIYVESDENLRI 71 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHH---HTTSCCCC-------EEEEEETTCGGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhc---ccccccCC-------ccccCCcchHHH
Confidence 7999996 9999999999999995 99999998643 22111111111 00001000 001223446789
Q ss_pred cCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 385 FKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 385 l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
+++||+||.+.. .+..+.+++..++.++++ +.+++ . |-|+.
T Consensus 72 l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iiv-V--tNPvD 126 (145)
T d1hyea1 72 IDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV-I--TNPVD 126 (145)
T ss_dssp GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE-C--SSSHH
T ss_pred hccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEE-E--cCchH
Confidence 999999999862 144456666777888875 45543 2 34554
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.20 E-value=3.7e-06 Score=75.90 Aligned_cols=121 Identities=19% Similarity=0.312 Sum_probs=75.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
.||+|||+|..|+++|..++..+. +++++|++++.++.....+.... .. . .....+..+.+++++++
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~-~~-~----------~~~~~v~~~~~~~~~~~ 71 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTN-VM-A----------YSNCKVSGSNTYDDLAG 71 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHH-HH-H----------TCCCCEEEECCGGGGTT
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhc-cc-c----------CCCcEEEecccccccCC
Confidence 489999999999999998888875 89999999987654332222110 00 0 00112334556789999
Q ss_pred CCEEEEeccC-------------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc----ccC-CCCcEEE
Q 004726 388 VDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE----KTS-SQDRIIG 443 (733)
Q Consensus 388 aDlVI~avpe-------------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~----~~~-~~~~~ig 443 (733)
||+||.+.-. +..+.+++..++.++++ +++++..| -|+..+.. ... .+.|++|
T Consensus 72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvt--NPvD~~t~~~~~~sg~p~~rViG 148 (150)
T d1t2da1 72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVT--NPVDVMVQLLHQHSGVPKNKIIG 148 (150)
T ss_dssp CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECS--SSHHHHHHHHHHHHCCCGGGEEE
T ss_pred CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEec--CchHHHHHHHHHHHCCCchheec
Confidence 9999998731 22255566667777765 45554333 33333222 222 3467776
Q ss_pred E
Q 004726 444 A 444 (733)
Q Consensus 444 ~ 444 (733)
+
T Consensus 149 ~ 149 (150)
T d1t2da1 149 L 149 (150)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.16 E-value=9e-07 Score=80.71 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=66.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.||+|||+|.+|.++|..++..|+ +++++|++++.++.-...+... ....+ ...+..+.++++++
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~---~~~~~----------~~~~~~~~d~~~~~ 86 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG---SLFLS----------TPKIVFGKDYNVSA 86 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT---TTTCS----------CCEEEEESSGGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc---chhcC----------CCeEEeccchhhhc
Confidence 589999999999999999999986 8999999988765432222110 00001 01233456788999
Q ss_pred CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 387 ~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+||+||.+.. .+..+.+++..++.+..+. .+++.
T Consensus 87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~-~iviv 134 (159)
T d2ldxa1 87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPD-CKIIV 134 (159)
T ss_dssp TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTT-CEEEE
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCC-eEEEE
Confidence 9999998872 1344555555567776654 44443
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.99 E-value=1.5e-05 Score=73.51 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=50.5
Q ss_pred ceEEEEcCCcCcHHHHH--HHHHC----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIAT--AHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~--~l~~~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|..|...+. .++.. +.+++++|+++++++.....+.+.....-.. -++..++|.
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~------------~~i~~~td~ 70 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGAD------------LKFEKTMNL 70 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCC------------CEEEEESCH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCC------------eEEEEeCCh
Confidence 38999999999976543 34432 4699999999998876544333332221111 245556666
Q ss_pred -cccCCCCEEEEec
Q 004726 383 -SEFKDVDMVIEAV 395 (733)
Q Consensus 383 -~~l~~aDlVI~av 395 (733)
+++++||+||.++
T Consensus 71 ~eaL~dad~Vv~~~ 84 (171)
T d1obba1 71 DDVIIDADFVINTA 84 (171)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhcccCCCeEeeec
Confidence 7899999999875
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.94 E-value=1.8e-06 Score=80.73 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=77.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|..+..-|.+|++||+++... ......++ +.+++
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~------------------------------~~~~~~~l~ell~~ 92 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG------------------------------PWRFTNSLEEALRE 92 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS------------------------------SSCCBSCSHHHHTT
T ss_pred ceEEEeccccccccceeeeecccccccccccccccc------------------------------ceeeeechhhhhhc
Confidence 589999999999999999999999999999875310 11123344 67899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccC-CCCcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS-SQDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~-~~~~~ig~h~~ 447 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |+| + +.-..+.+.+. .+..-.+...+
T Consensus 93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailI-N~~RG~ivd~~aL~~aL~~~~i~~aalDV~ 155 (181)
T d1qp8a1 93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFV-NVGRAEVLDRDGVLRILKERPQFIFASDVW 155 (181)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEE-ECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred cchhhcccccccccccccccceeeeccccceEE-eccccccccchhhhhhcccCcEEEEEEecC
Confidence 999999999877765555466777889999886 454 2 44445555543 23344455543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.92 E-value=1.2e-05 Score=71.93 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=63.7
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
||+|||+ |.+|.++|..++..|. +++++|+++.+.+. .+ ..+.... ......+...+++++++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a-~D---------l~~~~~~----~~~~~~~~~~~~~~~~~ 67 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA-AD---------LSHIETR----ATVKGYLGPEQLPDCLK 67 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH-HH---------HTTSSSS----CEEEEEESGGGHHHHHT
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh-HH---------Hhhhhhh----cCCCeEEcCCChHHHhC
Confidence 8999995 9999999999999986 79999998754322 11 1111000 00001122233347799
Q ss_pred CCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 387 ~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+||+||.+.. .+..+.+++.+++.++.+ +++++..|.
T Consensus 68 ~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiivvtN 118 (144)
T d1mlda1 68 GCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISN 118 (144)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSS
T ss_pred CCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-CeEEEEecC
Confidence 9999998763 245566777778888865 455544343
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.83 E-value=5.4e-05 Score=69.24 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=49.0
Q ss_pred ceEEEEcCCcCcHHHHH-HHHH-C----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIAT-AHIL-N----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~-~l~~-~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|..|.+.+. .++. . +-+|+++|+++++++.....++...... + ....+..++|.
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~d~ 71 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK---A---------PDIEFAATTDP 71 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH---C---------TTSEEEEESCH
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHh---C---------CCcceEecCCh
Confidence 48999999999877442 3332 2 2389999999999775433332221111 1 01245556665
Q ss_pred -cccCCCCEEEEec
Q 004726 383 -SEFKDVDMVIEAV 395 (733)
Q Consensus 383 -~~l~~aDlVI~av 395 (733)
+++++||+||.++
T Consensus 72 ~eal~~AD~Vvita 85 (167)
T d1u8xx1 72 EEAFTDVDFVMAHI 85 (167)
T ss_dssp HHHHSSCSEEEECC
T ss_pred hhccCCCCEEEECC
Confidence 7899999999997
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.80 E-value=9.6e-06 Score=76.15 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=38.8
Q ss_pred ceEEEE-cCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVI-GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VI-G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+||+|| |+|.||.+||..|+++|++|++|+|++++++...+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i 44 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY 44 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 379999 7899999999999999999999999999988776554
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.77 E-value=6.7e-06 Score=77.72 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=75.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+..-|.+|..||+........ .... ..++ +.+++
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~--------------------------~~~~-~~~l~~~l~~ 96 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEK--------------------------KGYY-VDSLDDLYKQ 96 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH--------------------------TTCB-CSCHHHHHHH
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCccccccccc--------------------------ceee-eccccccccc
Confidence 589999999999999999999999999999875432110 0111 2334 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC-CCCcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS-SQDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~-~~~~~ig~h~~ 447 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |+|- +.-..+.+.+. ..-.-.++.-|
T Consensus 97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~~~i~~a~lDV~ 159 (197)
T d1j4aa1 97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIV-NVSRGPLVDTDAVIRGLDSGKIFGYAMDVY 159 (197)
T ss_dssp CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred cccccccCCccccccccccHHHHhhhCCccEEE-ecCchhhhhhHHHHHHHhcccchheeeecc
Confidence 999999999777755544456667789998875 5653 33445545443 22233444444
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.77 E-value=4.3e-05 Score=67.87 Aligned_cols=97 Identities=20% Similarity=0.254 Sum_probs=61.9
Q ss_pred ceEEEEc-CCcCcHHHHHHHHHCCC--eeEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccc-cccCc
Q 004726 309 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDY 382 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~~G~--~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~ 382 (733)
.||+||| +|.+|.++|..++..|. +++++|++. +.++.-.-.+... .. ...... .+.++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~----~~-----------~~~~~~i~~~~~ 65 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG----IA-----------YDSNTRVRQGGY 65 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH----HT-----------TTCCCEEEECCG
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhc----cc-----------ccCCceEeeCCH
Confidence 4899999 69999999999999987 899999853 2222111111111 00 001111 24567
Q ss_pred cccCCCCEEEEecc-----C---------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 383 SEFKDVDMVIEAVI-----E---------SVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 383 ~~l~~aDlVI~avp-----e---------~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+++++||+||.+.- . +..+.+++..++.++.+. .+++.
T Consensus 66 ~~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~-~i~iv 117 (142)
T d1o6za1 66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDD-YISLT 117 (142)
T ss_dssp GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSC-CEEEE
T ss_pred HHhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCC-ceEEE
Confidence 88999999998862 1 345666666777777654 44443
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=4.7e-05 Score=70.72 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=92.6
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 18 ITLINPPVNALAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~d---~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
|.|+.| ++.++..++...+..++.+ +++.+. |.+. |+|+.. +..++ ..+
T Consensus 16 i~l~g~----I~~~~~~~~i~~l~~l~~~~~~~~I~l~-InS~------GG~v~~----------------gl~i~-d~i 67 (179)
T d2cbya1 16 IFLGSE----VNDEIANRLCAQILLLAAEDASKDISLY-INSP------GGSISA----------------GMAIY-DTM 67 (179)
T ss_dssp EEECSC----BCHHHHHHHHHHHHHHHHHCSSSCEEEE-EEEC------CBCHHH----------------HHHHH-HHH
T ss_pred EEECCE----ECHHHHHHHHHHHHHHhccCCCCeEEEE-eeCC------CCCHHH----------------HHHHH-HHH
Confidence 445554 7888888888877555432 334333 3433 333321 12455 568
Q ss_pred hcCCCcEEEEeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhhhh------------------hccc-
Q 004726 95 EDCKKPIVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR------------------LPRL- 153 (733)
Q Consensus 95 ~~~~kp~Iaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~~~------------------l~r~- 153 (733)
..++.||...+.|.|.+.|.-+++++| .|++.++++|-+-+...|.. |...- +.+.
T Consensus 68 ~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~---G~~~~i~~~~~~l~~~~~~i~~i~a~~t 144 (179)
T d2cbya1 68 VLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVT---GSAADIAIQAEQFAVIKKEMFRLNAEFT 144 (179)
T ss_dssp HHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccceeeehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999 89999999999887765542 22110 1111
Q ss_pred -cCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 154 -VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 154 -~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
.....-.+++-....++|+||+++||||+|+..
T Consensus 145 g~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~ 178 (179)
T d2cbya1 145 GQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 178 (179)
T ss_dssp CCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred CCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence 133344556667888999999999999999864
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.72 E-value=3.8e-05 Score=67.64 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=61.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC--c--cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y--SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~--~~ 384 (733)
|++.|+|+|.+|..+|..|.+.|++|+++|.|++.++++.+ .+.. ...+ ..++. + ..
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-----------~~~~------~~~g--d~~~~~~l~~a~ 61 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-----------YATH------AVIA--NATEENELLSLG 61 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-----------TCSE------EEEC--CTTCTTHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-----------hCCc------ceee--ecccchhhhccC
Confidence 46899999999999999999999999999999999877521 1110 0000 01111 1 23
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+.+||.||.+++++..... +...+.+..+...|++-
T Consensus 62 i~~a~~vi~~~~~~~~~~~-~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 62 IRNFEYVIVAIGANIQAST-LTTLLLKELDIPNIWVK 97 (134)
T ss_dssp GGGCSEEEECCCSCHHHHH-HHHHHHHHTTCSEEEEE
T ss_pred CccccEEEEEcCchHHhHH-HHHHHHHHcCCCcEEee
Confidence 6889999999997765422 23334445555556553
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.65 E-value=0.00018 Score=63.08 Aligned_cols=97 Identities=22% Similarity=0.200 Sum_probs=60.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||.|+|+|.+|..+|..|.+.|++|+++|.|++.++++.+.. ...+=.|-.+..+... ...++++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l~----------~~~i~~a 66 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLE----------DAGIEDA 66 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHH----------HTTTTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----hhhhccCcccchhhhh----------hcChhhh
Confidence 3799999999999999999999999999999999988753210 0000011111000000 0336889
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
|.++.+.+++.. . .+...+.+...+..+++.
T Consensus 67 ~~vv~~t~~d~~-N-~~~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 67 DMYIAVTGKEEV-N-LMSSLLAKSYGINKTIAR 97 (132)
T ss_dssp SEEEECCSCHHH-H-HHHHHHHHHTTCCCEEEE
T ss_pred hhhcccCCcHHH-H-HHHHHHHHHcCCceEEEE
Confidence 999988775432 2 233444455556666654
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.64 E-value=0.00011 Score=67.57 Aligned_cols=122 Identities=18% Similarity=0.242 Sum_probs=67.5
Q ss_pred ceEEEEcCCcCcHH--HHHHHHHC----CCeeEEEeCChHHHHH-HHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC
Q 004726 309 RKVAVIGGGLMGSG--IATAHILN----NIYVVLKEVNSEYLLK-GIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (733)
Q Consensus 309 ~kI~VIG~G~mG~~--iA~~l~~~----G~~V~~~d~~~e~~~~-~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (733)
.||+|||+|..|.+ ++..++.. +-+++++|++++..+. +.+... ......-.. .-.+..++|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~---~~~~~~~~~--------~~~~~~~td 70 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA---KRMVEKAGV--------PIEIHLTLD 70 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHH---HHHHHHTTC--------CCEEEEESC
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHH---HHHHHhcCC--------CceeeecCC
Confidence 38999999988754 33344432 2389999999865221 111111 111111000 013445566
Q ss_pred c-cccCCCCEEEEeccC----------------------------------ChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 382 Y-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 382 ~-~~l~~aDlVI~avpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
. +++++||+||.++.- +..+.+++.+++.+++ |++++... |-
T Consensus 71 ~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~v--tN 147 (169)
T d1s6ya1 71 RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINF--TN 147 (169)
T ss_dssp HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC--SS
T ss_pred chhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEe--CC
Confidence 5 778999999999841 2334567778888887 55555433 33
Q ss_pred CHHHHh---cccCCCCcEEEE
Q 004726 427 DLNIVG---EKTSSQDRIIGA 444 (733)
Q Consensus 427 ~~~~l~---~~~~~~~~~ig~ 444 (733)
|+..+. .....+.|++|+
T Consensus 148 Pvdv~t~~~~k~~p~~kviGl 168 (169)
T d1s6ya1 148 PAGMVTEAVLRYTKQEKVVGL 168 (169)
T ss_dssp SHHHHHHHHHHHCCCCCEEEC
T ss_pred hHHHHHHHHHHHCCCCCEEee
Confidence 433222 222234577764
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.63 E-value=0.00014 Score=68.14 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~---~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
.++.++...+...+..++.++ ++. +.|.+.| +|+.. +..++ ..+..++.||..
T Consensus 32 ~I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~G------G~v~~----------------glai~-d~i~~~~~~v~t 87 (192)
T d1y7oa1 32 PVEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPG------GSVSA----------------GLAIV-DTMNFIKADVQT 87 (192)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECC------BCHHH----------------HHHHH-HHHHHSSSCEEE
T ss_pred EEchHHHHHHHHHHHHhhhhcccCcee-eeecCCC------CCHHH----------------HHHHH-HHHHhcCcceEE
Confidence 378888888888887665322 343 3335544 33221 22555 668889999999
Q ss_pred EeCCcccchhhHHhhh--cCEEEEeCCceEeCccccCCCCCChhhhh------hh-----------ccc--cCHHHHHHH
Q 004726 104 AVEGLALGGGLELAMG--CHARIAAPKTQLGLPELTLGVIPGFGGTQ------RL-----------PRL--VGLSKAIEM 162 (733)
Q Consensus 104 av~G~a~GgG~~lala--cD~ria~~~a~f~~pe~~~Gl~P~~g~~~------~l-----------~r~--~G~~~a~~l 162 (733)
.+.|.|.+.|.-++++ ||.|++.++++|-+-....|..-...... .+ ... .......+.
T Consensus 88 ~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~ 167 (192)
T d1y7oa1 88 IVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD 167 (192)
T ss_dssp EEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred EeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 9999999999888775 67999999999999888766532111110 01 111 123444556
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCc
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
+-....++|+||+++||||+|+..
T Consensus 168 ~~rd~~lsa~EAleyGliD~Ii~~ 191 (192)
T d1y7oa1 168 AERDNWMSAQETLEYGFIDEIMAN 191 (192)
T ss_dssp HHSCCCBCHHHHHHHTSCSEECCC
T ss_pred hcCCceecHHHHHHcCCCcEEecC
Confidence 667788999999999999999853
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.62 E-value=1.1e-05 Score=76.02 Aligned_cols=102 Identities=17% Similarity=0.075 Sum_probs=71.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||+|.+|..+|+.+..-|.+|..||+....-... . ..+...+++ +.++.
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------------------~-~~~~~~~~l~~ll~~ 104 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------------------A-LGLQRVSTLQDLLFH 104 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------------------H-HTCEECSSHHHHHHH
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccchh------------------------h-hccccccchhhcccc
Confidence 589999999999999999999999999999865431110 0 112234455 56799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 436 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |+|- +.-..+.+.+.
T Consensus 105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~ 155 (193)
T d1mx3a1 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLV-NTARGGLVDEKALAQALK 155 (193)
T ss_dssp CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEeecccccchhhhhHHHHhccCCCCeEE-ecCCceEEcHHHHHHHHH
Confidence 999999999766655544456667889999885 5652 33445555443
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=4.4e-05 Score=71.22 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=94.2
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 18 ITLINPPVNALAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~---~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
|.|+.| ++.++...+...+..++.++ .+. |.|.+. |+|+.. ...++ ..|
T Consensus 19 I~l~g~----I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~------GG~v~~----------------g~~i~-d~i 70 (183)
T d1yg6a1 19 IFLTGQ----VEDHMANLIVAQMLFLEAENPEKDIY-LYINSP------GGVITA----------------GMSIY-DTM 70 (183)
T ss_dssp EEEESS----BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEEC------CBCHHH----------------HHHHH-HHH
T ss_pred EEECCE----ECHHHHHHHHHHHHHhhhhccCCceE-EEEeCC------CccHHH----------------HHHHH-HHH
Confidence 445554 78888989888888776433 333 333443 334321 22555 678
Q ss_pred hcCCCcEEEEeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhhhhh------------------ccc-
Q 004726 95 EDCKKPIVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRL- 153 (733)
Q Consensus 95 ~~~~kp~Iaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~~~l------------------~r~- 153 (733)
..++.|+...+.|.|.+.|.-+.++|| .|++.++++|-+-+...|.. |-..-+ .+.
T Consensus 71 ~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~t 147 (183)
T d1yg6a1 71 QFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHT 147 (183)
T ss_dssp HHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999998 79999999998877765532 221111 111
Q ss_pred -cCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 154 -VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 154 -~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
.......+++-.-..++|+||+++|+||+|+..
T Consensus 148 g~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~ 181 (183)
T d1yg6a1 148 GQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH 181 (183)
T ss_dssp CCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred CcCHHHHHHHhccCccccHHHHHHcCCCcEEecc
Confidence 122334444445566799999999999999864
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=1e-05 Score=72.42 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=61.3
Q ss_pred ceEEEEc-CCcCcHHHHHHHHH-C--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIG-GGLMGSGIATAHIL-N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~-~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
.||+||| +|.+|.++|..|+. . +.++.++|+++.....+.+ ..+.... .....+..++++++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~D---------l~h~~~~-----~~~~~~~~~~~~~~ 66 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVD---------LSHIPTA-----VKIKGFSGEDATPA 66 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHH---------HHTSCSS-----CEEEEECSSCCHHH
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHH---------HHCCccc-----cCCcEEEcCCCccc
Confidence 3899999 59999999998864 3 4699999997643222211 1111000 00012233456688
Q ss_pred cCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEE
Q 004726 385 FKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 385 l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii 419 (733)
++++|+||.+.- .+..+.+++.+++.++.++..++
T Consensus 67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivi 115 (145)
T d2cmda1 67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIG 115 (145)
T ss_dssp HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 999999998872 14556677777888887665433
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.60 E-value=2.7e-05 Score=71.97 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=36.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|||+|.||..+|..|++.|++|+++||+.++++..
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l 41 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL 41 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHH
Confidence 689999999999999999999999999999999987764
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.56 E-value=0.00012 Score=66.71 Aligned_cols=72 Identities=19% Similarity=0.123 Sum_probs=47.6
Q ss_pred eEEEEcCCcCcHHHHHHHHH--C----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC-c
Q 004726 310 KVAVIGGGLMGSGIATAHIL--N----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-Y 382 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~--~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~ 382 (733)
||+|||+|..|.+++..... . +.+++++|+++++++...+... ...... ..+..+++ +
T Consensus 2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~----~~~~~~-----------~~~~~t~~~~ 66 (162)
T d1up7a1 2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVK----RLVKDR-----------FKVLISDTFE 66 (162)
T ss_dssp EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHH----HHHTTS-----------SEEEECSSHH
T ss_pred EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHH----hhhccC-----------ceEEEecCcc
Confidence 79999999999888854332 1 3589999999998765432111 111111 12333444 4
Q ss_pred cccCCCCEEEEecc
Q 004726 383 SEFKDVDMVIEAVI 396 (733)
Q Consensus 383 ~~l~~aDlVI~avp 396 (733)
+++++||+||.+.-
T Consensus 67 ~~l~~aDvVVita~ 80 (162)
T d1up7a1 67 GAVVDAKYVIFQFR 80 (162)
T ss_dssp HHHTTCSEEEECCC
T ss_pred cccCCCCEEEEecc
Confidence 88999999999874
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=5.8e-05 Score=68.07 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=67.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|+|.|.+|.++|+.+...|.+|+++|++|-..-++ .+.......-.+++..+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A------------------------~~dG~~v~~~~~a~~~a 80 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQA------------------------AMEGYEVTTMDEACQEG 80 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH------------------------HHTTCEECCHHHHTTTC
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHh------------------------hcCceEeeehhhhhhhc
Confidence 579999999999999999999999999999999553222 11223333333678899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhc
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGE 433 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~ 433 (733)
|+||.+....-.+..+ -.+.+++++|++..++. +.+..+.+
T Consensus 81 divvtaTGn~~vI~~e----h~~~MKdgaIL~N~Ghfd~EId~~~L~~ 124 (163)
T d1li4a1 81 NIFVTTTGCIDIILGR----HFEQMKDDAIVCNIGHFDVEIDVKWLNE 124 (163)
T ss_dssp SEEEECSSCSCSBCHH----HHTTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred cEEEecCCCccchhHH----HHHhccCCeEEEEeccccceecHHHHhh
Confidence 9999887643333333 33467899998754442 44444543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.52 E-value=4.2e-05 Score=71.73 Aligned_cols=114 Identities=12% Similarity=0.055 Sum_probs=77.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+..-|.+|..||+.......... .......++ +.++.
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------~~~~~~~~l~~ll~~ 103 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS------------------------YQATFHDSLDSLLSV 103 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH------------------------HTCEECSSHHHHHHH
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhhc------------------------ccccccCCHHHHHhh
Confidence 68999999999999999999999999999986543221100 112223344 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC-CCCcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS-SQDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~-~~~~~ig~h~~ 447 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |+|- +.-..+.+.+. ..-...++..|
T Consensus 104 sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~g~i~~a~lDV~ 166 (191)
T d1gdha1 104 SQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV-NTARGDLVDNELVVAALEAGRLAYAGFDVF 166 (191)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred CCeEEecCCCCchHhheecHHHhhCcCCccEEE-ecCCccchhhHHHHHHHHcCCceEEEEECC
Confidence 999999999877765555456777899999885 6663 33345555443 22233455543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.47 E-value=2.6e-05 Score=73.20 Aligned_cols=103 Identities=13% Similarity=0.017 Sum_probs=73.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+..-|.+|..||+....-.... . ..+....++ +.+++
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------------------~-~~~~~~~~l~~~l~~ 100 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------------------E-LNLTWHATREDMYPV 100 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------------------H-HTCEECSSHHHHGGG
T ss_pred cceeeccccccchhhhhhhhccCceEEEEeeccccccccc-----------------------c-ccccccCCHHHHHHh
Confidence 5899999999999999999999999999998643211110 0 112223444 67899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 436 (733)
||+|+.++|-+.+.+.-+=++..+.++++++++ |+|- +....+.+.+.
T Consensus 101 sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~ivd~~aL~~aL~ 151 (188)
T d2naca1 101 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIV-NTARGKLCDRDAVARALE 151 (188)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred ccchhhcccccccchhhhHHHHHHhCCCCCEEE-ecCchhhhhHHHHHHHHh
Confidence 999999999777665555566777889999875 5653 44455655554
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.43 E-value=8.3e-05 Score=67.53 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=62.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|.|||+|.||..++..|...|+ +|++++|+.++++...+.+ + ......+++ +.+.
T Consensus 25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~-----------~~~~~~~~~~~~l~ 83 (159)
T d1gpja2 25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------G-----------GEAVRFDELVDHLA 83 (159)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------T-----------CEECCGGGHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------h-----------cccccchhHHHHhc
Confidence 589999999999999999999998 6999999998876543211 1 011111222 5678
Q ss_pred CCCEEEEeccCC-hHHHHHHHHHHHHhCC--CCeEEEec
Q 004726 387 DVDMVIEAVIES-VPLKQKIFSELEKACP--PHCILATN 422 (733)
Q Consensus 387 ~aDlVI~avpe~-~~~k~~v~~~l~~~~~--~~~ii~s~ 422 (733)
++|+||.|++.+ +-+.++.++...+.-+ ...++++-
T Consensus 84 ~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDl 122 (159)
T d1gpja2 84 RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDI 122 (159)
T ss_dssp TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred cCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence 999999999633 2344555555444332 23355553
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.41 E-value=1.6e-05 Score=75.34 Aligned_cols=99 Identities=17% Similarity=0.071 Sum_probs=70.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|..+..-|.+|++||+....... ..... .++ +.++.
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---------------------------~~~~~-~~l~~l~~~ 97 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---------------------------PDFDY-VSLEDLFKQ 97 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---------------------------TTCEE-CCHHHHHHH
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhhh---------------------------cchhH-HHHHHHHHh
Confidence 58999999999999999999999999999986532100 01111 233 55789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 436 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |++- +.-.++.+.+.
T Consensus 98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~vvde~aL~~aL~ 148 (199)
T d1dxya1 98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVI-NTARPNLIDTQAMLSNLK 148 (199)
T ss_dssp CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred cccceeeecccccccccccHHHhhccCCceEEE-ecccHhhhhhHHHHHHHh
Confidence 999999999877765544456667789999875 5653 33445555543
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=97.40 E-value=0.00036 Score=65.10 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=94.1
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcC--CCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 18 ITLINPPVNALAIPIVAGLKDKFEEATSR--DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~d--~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
|.|+.| ++.++..++...+..+++. +++... |.+. |+|+.. +..++ ..+.
T Consensus 21 i~l~g~----Id~~~~~~~i~~l~~l~~~~~~~I~l~-INS~------GG~v~~----------------g~ai~-d~i~ 72 (190)
T d2f6ia1 21 IYLTDE----INKKTADELISQLLYLDNINHNDIKIY-INSP------GGSINE----------------GLAIL-DIFN 72 (190)
T ss_dssp EEECSC----BCHHHHHHHHHHHHHHHHHCCSCEEEE-EEEC------CBCHHH----------------HHHHH-HHHH
T ss_pred EEECCe----eCHHHHHHHHHHHHHHhccCCCCeEEE-EeCc------hhhhhH----------------HHHHH-HHHH
Confidence 345554 7888888888888777543 334333 3333 333321 22455 6688
Q ss_pred cCCCcEEEEeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhhhh------------------hccccC
Q 004726 96 DCKKPIVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR------------------LPRLVG 155 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~~~------------------l~r~~G 155 (733)
.++.|+...+.|.|.+.|.-++++++ .|++.++++|-+.....|.. |...- +.+.-|
T Consensus 73 ~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i~a~~tg 149 (190)
T d2f6ia1 73 YIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHYLSSFTN 149 (190)
T ss_dssp HSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred hhCCceEEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999988 69999999999988877653 22221 111112
Q ss_pred --HHHHHHHHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 156 --LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 156 --~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
.....+.+-.-..++|+||+++||||+|+..
T Consensus 150 ~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~ 182 (190)
T d2f6ia1 150 QTVETIEKDSDRDYYMNALEAKQYGIIDEVIET 182 (190)
T ss_dssp CCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred CCHHHHHHhccCCeeecHHHHHHcCCCcEEccc
Confidence 2233344455667899999999999999853
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.36 E-value=4.4e-05 Score=71.27 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=76.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+..-|.+|+.||+......... ..+.. .++ +.+++
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-------------------------~~~~~-~~l~ell~~ 98 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-------------------------LGIEL-LSLDDLLAR 98 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-------------------------HTCEE-CCHHHHHHH
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-------------------------cCcee-ccHHHHHhh
Confidence 6899999999999999999999999999998765422210 01222 233 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccCCC-CcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSSQ-DRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~~-~~~ig~h~~ 447 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |+|- +.-..+.+.+... -...++..|
T Consensus 99 sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lI-N~sRG~iVde~aL~~aL~~~~i~~a~lDV~ 161 (184)
T d1ygya1 99 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIV-NAARGGLVDEAALADAITGGHVRAAGLDVF 161 (184)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHHTSSEEEEEESSC
T ss_pred CCEEEEcCCCCchhhhhhhHHHHhhhCCCceEE-EecchhhhhhHHHHHHHhcCcEeEEEEeCC
Confidence 999999999777765544456777889999875 5652 4444555555432 233445544
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.30 E-value=0.00042 Score=64.74 Aligned_cols=132 Identities=14% Similarity=0.212 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d---~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
-++.++...+...+..++.. .++...+ .+.|+ |+. ....++ +.+..++.||..
T Consensus 34 ~I~~~~~~~~i~~l~~l~~~~~~~~I~l~I-nS~GG------~v~----------------~g~~i~-d~i~~~~~~V~t 89 (193)
T d1tg6a1 34 PIDDSVASLVIAQLLFLQSESNKKPIHMYI-NSPGG------VVT----------------AGLAIY-DTMQYILNPICT 89 (193)
T ss_dssp SBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCB------CHH----------------HHHHHH-HHHHHSCSCEEE
T ss_pred EEchHHHHHHHHHHHHhcccCCCcEEEEEe-ecCcc------cHH----------------HHHHHH-HHHHhhcCceEE
Confidence 47888888888777766532 3344333 44443 221 122455 678889999999
Q ss_pred EeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhhhhh------------------ccc--cCHHHHHH
Q 004726 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRL--VGLSKAIE 161 (733)
Q Consensus 104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~~~l------------------~r~--~G~~~a~~ 161 (733)
.+.|.|.+.|.-+.+++| .|++.++|+|-+-....|.. |-..-+ ... .......+
T Consensus 90 v~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~---G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~ 166 (193)
T d1tg6a1 90 WCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR---GQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIES 166 (193)
T ss_dssp EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred EEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999 59999999999988876642 221111 111 12233344
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcC
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
++-.-..++|+||+++||||+|+.
T Consensus 167 ~~~rD~~lta~EAl~yGliD~Ii~ 190 (193)
T d1tg6a1 167 AMERDRYMSPMEAQEFGILDKVLV 190 (193)
T ss_dssp HHSSCEEECHHHHHHHTSCSEECS
T ss_pred HhccCccCCHHHHHHcCCCCEEcc
Confidence 444556689999999999999984
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.25 E-value=0.00028 Score=63.45 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=69.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH-HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||-|.-|.+-|++|..+|.+|++--|... ..+++. + ......+-.++++.
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~-----------~-------------~Gf~v~~~~eA~~~ 72 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------A-------------HGLKVADVKTAVAA 72 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------H-------------TTCEEECHHHHHHT
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh-----------h-------------hccccccHHHHhhh
Confidence 5899999999999999999999999998777543 233321 1 22333333478899
Q ss_pred CCEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~ 428 (733)
+|+|...+| -+.-.++++ ++.+.++++..+. -+.++.+
T Consensus 73 aDiim~L~P--D~~q~~vy~~~I~p~lk~g~~L~-FaHGfnI 111 (182)
T d1np3a2 73 ADVVMILTP--DEFQGRLYKEEIEPNLKKGATLA-FAHGFSI 111 (182)
T ss_dssp CSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEE-ESCCHHH
T ss_pred cCeeeeecc--hHHHHHHHHHhhhhhcCCCcEEE-EeccceE
Confidence 999999999 555668885 6999999998875 3444444
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=3.3e-05 Score=72.48 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=75.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+...|.+|+.||+....... ......++ +.++.
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~----------------------------~~~~~~~l~ell~~ 96 (188)
T d1sc6a1 45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG----------------------------NATQVQHLSDLLNM 96 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCT----------------------------TCEECSCHHHHHHH
T ss_pred eEEEEeecccchhhhhhhcccccceEeeccccccchhh----------------------------hhhhhhhHHHHHhh
Confidence 68999999999999999999999999999986532100 11112233 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccC-CCCcEEEEec
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS-SQDRIIGAHF 446 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~-~~~~~ig~h~ 446 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |+| + +.-.++.+.+. ......++..
T Consensus 97 sDii~i~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~lvde~aL~~aL~~~~~~~a~lDV 158 (188)
T d1sc6a1 97 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLI-NASRGTVVDIPALADALASKHLAGAAIDV 158 (188)
T ss_dssp CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEE-ECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred ccceeecccCCcchhhhccHHHHhhCCCCCEEE-EcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence 999999999877766555567777889999885 555 2 44455555543 2333344443
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.12 E-value=0.00047 Score=64.26 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=65.5
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCC------CeeEEEeCC-hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNN------IYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G------~~V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 379 (733)
.++||+|||-|.-|.+-|.+|..+| ..|++-=+. ....+++. +.|.-. ......
T Consensus 43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~-----------~dGf~v--------~~~~v~ 103 (226)
T d1qmga2 43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR-----------AAGFSE--------ENGTLG 103 (226)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCG--------GGTCEE
T ss_pred CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH-----------HcCCcc--------CCCccc
Confidence 3579999999999999999999965 456544332 22333332 222100 000111
Q ss_pred cCccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH
Q 004726 380 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 380 ~~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
+-.++++.+|+|...+| -+.-.++|+++.++++++..+.- +-++.+
T Consensus 104 ~v~EAv~~ADiVmiLlP--De~Q~~vy~~I~p~Lk~G~~L~F-aHGFnI 149 (226)
T d1qmga2 104 DMWETISGSDLVLLLIS--DSAQADNYEKVFSHMKPNSILGL-SHGFLL 149 (226)
T ss_dssp EHHHHHHTCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEE-SSSHHH
T ss_pred CHHHHHhhCCEEEEecc--hHHHHHHHHHHHHhcCCCceeee-cchhhh
Confidence 22267899999999999 55556788999999999998753 334444
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.11 E-value=0.00029 Score=63.04 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=64.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+++.|+|-|..|.++|+.+...|..|+++++||-.+-++ .++..+..+-.++++.+
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a 79 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG 79 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence 579999999999999999999999999999999653222 22334433334789999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
|++|.+....-.+..+ -...+++++|++...
T Consensus 80 Di~vTaTGn~~vI~~~----h~~~MKdgaIl~N~G 110 (163)
T d1v8ba1 80 DFFITCTGNVDVIKLE----HLLKMKNNAVVGNIG 110 (163)
T ss_dssp SEEEECCSSSSSBCHH----HHTTCCTTCEEEECS
T ss_pred cEEEEcCCCCccccHH----HHHHhhCCeEEEecc
Confidence 9999998754433333 334578999986443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.01 E-value=0.00019 Score=64.74 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=60.5
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCC--hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~--~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 378 (733)
.||+|||+ |.+|..+|..|+..++ ...+++.+ .+.++..... ...... .....+..
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~------~~~~~~~~ 70 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME--------LEDCAF------PLLAGLEA 70 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH--------HHTTTC------TTEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh--------hhcccc------cccccccc
Confidence 38999997 9999999999998763 23344443 3333221110 111100 00112333
Q ss_pred cc-CccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 379 VL-DYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 379 ~~-~~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
++ +++++++||+||.+.- .+..+.+++...+.++++++++++..|
T Consensus 71 ~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 33 3478999999998872 134566667777888888888665433
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.0018 Score=64.55 Aligned_cols=137 Identities=14% Similarity=0.012 Sum_probs=96.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-+++++-.+.-...++.++.- .+-+|-|--.++ |-.|.+-++. -......+.+ ..+..+.+|+|++|
T Consensus 130 G~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtpG-~~~g~~~E~~----------g~~~~~a~~~-~~~~~~~vP~i~vv 196 (316)
T d2f9ya1 130 GMPAPEGYRKALRLMQMAERF-KMPIITFIDTPG-AYPGVGAEER----------GQSEAIARNL-REMSRLGVPVVCTV 196 (316)
T ss_dssp GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESC-SCCSHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred ccccHHHHHHHHHHHHHHHHc-CcceEEEEecCc-ccCCcccccc----------cHHHHHHHHH-HHHHhCCCceEEEE
Confidence 357888888888888887754 455666643333 3333322221 1222333455 56889999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|-+.|||......+|.+++.++|.++. +.|.++.+.++...--...|.+. ..+++++.+++|+||+|+|
T Consensus 197 ~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeII~ 266 (316)
T d2f9ya1 197 IGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP 266 (316)
T ss_dssp EEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred EhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhccc
Confidence 9999999998888999999999999983 35666666666544333334333 3479999999999999995
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.96 E-value=0.00037 Score=62.78 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=60.9
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (733)
||+|||+ |.+|.++|..|++.+. +++++|.++..... . .+ +......... ....+...++
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~-~-~l----~~~~~~~~~~------~~~~~~~~~~ 72 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVL-D-GV----LMELQDCALP------LLKDVIATDK 72 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHH-H-HH----HHHHHHTCCT------TEEEEEEESC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhh-h-hh----hhhhcccccc------cccccccCcc
Confidence 8999996 9999999999987653 57888876543221 1 11 1001111000 0112333333
Q ss_pred -ccccCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCeEE
Q 004726 382 -YSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 382 -~~~l~~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ii 419 (733)
+++++++|+||.+.. . +..+.+++..++.++++.+.++
T Consensus 73 ~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~i 125 (154)
T d5mdha1 73 EEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKV 125 (154)
T ss_dssp HHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred cccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEE
Confidence 478999999998872 1 2456677777888888887644
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.89 E-value=0.0011 Score=60.80 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=64.5
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 379 (733)
.-||+|+|+ |.+|.+++..|++... .+.++|++...-. .+.+.-. ...... .....+..+
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~--l~g~~md----l~d~a~------~~~~~~~~~ 91 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQA--LEGVAME----LEDSLY------PLLREVSIG 91 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHH--HHHHHHH----HHTTTC------TTEEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccch--hcchhhh----hccccc------ccccCcccc
Confidence 358999996 9999999999998642 5677777664311 1111100 111100 011233334
Q ss_pred cC-ccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 380 LD-YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 380 ~~-~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
++ +++++++|+||.... .+..+.+++.+.+.++++++++|+..+
T Consensus 92 ~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 92 IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 44 588999999998772 134566677778899998888665433
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=96.85 E-value=0.0041 Score=61.37 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=93.6
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
|.-|.+. --++++...+.+..+++.+... .+-+|.|.-. .|+.+.+-.... .........+.+ + ..+.
T Consensus 108 v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~-~lP~I~l~ds-----~Ga~~~~~~e~~--~~~~~~g~~~~~-~-a~ls 177 (287)
T d1pixa2 108 VVASDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLNC-----SGVKFDEQEKVY--PNRRGGGTPFFR-N-AELN 177 (287)
T ss_dssp EEEECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEECC-----CEECGGGHHHHS--SSTTSTTHHHHH-H-HHHH
T ss_pred EEEeccccccccchhhHHHHHHHHHHhhhhc-CCCEEEEecC-----CcccCCcchhhc--cchhhHHHHHHH-H-HHHh
Confidence 3334553 4688888889888888888755 3556766542 334443211110 001112222212 2 2356
Q ss_pred cCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCc--cccCCCCCChhhhhhhccccCHHHHHHH-HHcCCCCC--
Q 004726 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP--ELTLGVIPGFGGTQRLPRLVGLSKAIEM-MLLSKSIT-- 170 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~p--e~~~Gl~P~~g~~~~l~r~~G~~~a~~l-~ltG~~i~-- 170 (733)
...+|+|++|.|.|.|||...+++||++++.+++.+.+. .+--+..+..+ +....+.++ ..+|+.++
T Consensus 178 ~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~--------~~~~~~~ei~~~~ge~~~~e 249 (287)
T d1pixa2 178 QLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGH--------VDLEYANEIADMVDRTGKTE 249 (287)
T ss_dssp HTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSS--------CCHHHHHHHHHHHHTTCCCC
T ss_pred hcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhh--------hhhhhHHHHHhhhccccccc
Confidence 678999999999999999888888888888898888763 22222222211 122222222 13444444
Q ss_pred ---HHH--HHHcCCccEEcCcchHHHHHHHHHHHHHc
Q 004726 171 ---SEE--GWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (733)
Q Consensus 171 ---a~e--A~~~Glv~~vv~~~~l~~~a~~~a~~~a~ 202 (733)
..+ +..-|++|.+++.+ +++.+.++++..
T Consensus 250 eLGGa~~H~~~sG~~d~v~~~e---~~ai~~~r~~ls 283 (287)
T d1pixa2 250 PPGAVDIHYTETGFMREVYASE---EGVLEGIKKYVG 283 (287)
T ss_dssp CSSBHHHHTTTSCCSCEEESSH---HHHHHHHHHHHH
T ss_pred ccccHHHhhhhcccceeecCCH---HHHHHHHHHHHh
Confidence 333 34569999999664 345555555543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.00037 Score=65.77 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=36.1
Q ss_pred CCcceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHH
Q 004726 306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (733)
Q Consensus 306 ~~~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~ 345 (733)
|.|+||.|+|+ |.+|+.++..|+++|++|++++|+++++.
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~ 41 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP 41 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence 45789999995 99999999999999999999999988643
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.84 E-value=0.00078 Score=60.62 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=63.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
.||.|||+|.-|..-+....+.|..|+++|.+++++++..+. +...++.-..+.+.. .+.+++|
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~----~~~~~~~~~~~~~~l------------~~~~~~a 96 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL----FGSRVELLYSNSAEI------------ETAVAEA 96 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----HGGGSEEEECCHHHH------------HHHHHTC
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh----hcccceeehhhhhhH------------HHhhccC
Confidence 589999999999999999999999999999999998765332 111111111111100 1567899
Q ss_pred CEEEEecc--C---ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 389 DMVIEAVI--E---SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 389 DlVI~avp--e---~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
|+||-++- . +.-+. ++..+.++++.+|++.+
T Consensus 97 DivI~aalipG~~aP~lIt----~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 97 DLLIGAVLVPGRRAPILVP----ASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp SEEEECCCCTTSSCCCCBC----HHHHTTSCTTCEEEETT
T ss_pred cEEEEeeecCCcccCeeec----HHHHhhcCCCcEEEEee
Confidence 99999982 1 11122 34556688999887633
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=96.77 E-value=0.013 Score=56.59 Aligned_cols=148 Identities=11% Similarity=0.087 Sum_probs=90.8
Q ss_pred EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004726 16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (733)
Q Consensus 16 ~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (733)
..|.-+.+. --+++....+.+..+++.+.... +-+|.+.. |.|+.+.+-... ...+.... ... .
T Consensus 88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~d-----sgG~r~~e~~~~-----l~~~~~~~-~~~--~ 153 (251)
T d1vrga1 88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGIND-----SGGARIQEGVDA-----LAGYGEIF-LRN--T 153 (251)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHH-HHH--H
T ss_pred EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCccccccccc-----cccchHHH-HHH--H
Confidence 334444553 47888888899999888887553 45666653 234444321110 00111111 111 2
Q ss_pred HhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH
Q 004726 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (733)
Q Consensus 94 i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~ 172 (733)
...-..|+|+++.|+|.||+......||++|+.++ +.+.+. |+.. .+ ..+|+.++.+
T Consensus 154 ~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~a--------------------Gp~v-v~-~~~ge~~~~e 211 (251)
T d1vrga1 154 LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNV-IK-AVTGEEISQE 211 (251)
T ss_dssp HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHH-HH-HHHCCCCCHH
T ss_pred HHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEEec--------------------Cchh-hh-hhcCCcCChH
Confidence 33567999999999999999999999999998854 333211 1111 11 2567889988
Q ss_pred HH-------HHcCCccEEcCcchHHHHHHHHHHHHHc
Q 004726 173 EG-------WKLGLIDAVVTSEELLKVSRLWALDIAA 202 (733)
Q Consensus 173 eA-------~~~Glv~~vv~~~~l~~~a~~~a~~~a~ 202 (733)
+. ...|++|.+++.+ +.+.+.++++..
T Consensus 212 elGga~~h~~~sG~~D~v~~de---~~a~~~ir~lLs 245 (251)
T d1vrga1 212 DLGGAMVHNQKSGNAHFLADND---EKAMSLVRTLLS 245 (251)
T ss_dssp HHHBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHT
T ss_pred HccchhhhhhccccceEEECCH---HHHHHHHHHHHH
Confidence 75 4679999999754 344555555543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.74 E-value=0.002 Score=52.59 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=33.0
Q ss_pred CCcceEEEEcCCcCc-HHHHHHHHHCCCeeEEEeCChH
Q 004726 306 RGVRKVAVIGGGLMG-SGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG-~~iA~~l~~~G~~V~~~d~~~e 342 (733)
..+++|-|||.|-+| +++|+.|.+.|++|+++|....
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~ 43 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG 43 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 457899999999999 7789999999999999998753
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.72 E-value=0.0018 Score=58.81 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=35.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (733)
++|.|||+|-++.+++..|.+.|. +|++++|+.++.+..
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L 57 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL 57 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence 579999999999999999999997 799999999987664
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.65 E-value=0.0011 Score=60.56 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=51.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l~~ 387 (733)
++|.|+|+|-++.+++..|.+.+.+|++++|+.++++...+.+. ..+ .+.. ..+...+.+
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~~ 79 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQAVSMDSIPLQT 79 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEEEGGGCCCSC
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hcc------------ccchhhhccccccc
Confidence 57999999999999999999988899999999988776543221 111 1111 112234678
Q ss_pred CCEEEEeccC
Q 004726 388 VDMVIEAVIE 397 (733)
Q Consensus 388 aDlVI~avpe 397 (733)
+|+||.|+|-
T Consensus 80 ~diiIN~tp~ 89 (171)
T d1p77a1 80 YDLVINATSA 89 (171)
T ss_dssp CSEEEECCCC
T ss_pred cceeeecccc
Confidence 9999999983
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0014 Score=59.77 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=36.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|+|+|-.+++++..|.+.|.+|++++|+.++.+...
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~ 58 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA 58 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence 5799999999999999999999999999999999877653
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.56 E-value=0.034 Score=53.73 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=87.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
--+++....+.+..+++.+... .+-.|.|.-.| |+.+.+-... ...+.. ..... ....-.+|+|++
T Consensus 101 gGS~g~~~~~K~~r~~e~A~~~-~lPlI~l~dsg-----Garm~e~~~~-----~~~~~~-~~~~~--~~~s~~vP~I~v 166 (258)
T d1xnya1 101 GGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG-----GARIQEGVAS-----LGAYGE-IFRRN--THASGVIPQISL 166 (258)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SBCGGGTHHH-----HHHHHH-HHHHH--HHTTTTSCEEEE
T ss_pred cCccchhhHHHHHHHHHHHHHc-CCceEEEecCC-----CcccCccccc-----ccchhH-HHHHH--HHHcCCCCEEEE
Confidence 4788999999999999888765 35677776433 3333321110 001111 11111 123346999999
Q ss_pred eCCcccchhhHHhhhcCEEEEeC-CceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHH-------HH
Q 004726 105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK 176 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA-------~~ 176 (733)
+.|+|.||+......||++|+.+ .+.+++. |+.... ..+|+.++.+|+ ..
T Consensus 167 v~G~~~gG~a~~~~~~~~vim~~~~a~i~~a--------------------GP~vv~--~~~ge~i~~eelgga~~h~~~ 224 (258)
T d1xnya1 167 VVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK--TVTGEDVGFEELGGARTHNST 224 (258)
T ss_dssp ECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH--HHHCCCCCHHHHHBHHHHHHT
T ss_pred EcCCcChhHHHHHHhccchhhcccceEEEec--------------------CHHHHH--HHhcCccChHHhccHHHHHhc
Confidence 99999999999999999988875 4555431 111111 356888888875 45
Q ss_pred cCCccEEcCcchHHHHHHHHHHHHHc
Q 004726 177 LGLIDAVVTSEELLKVSRLWALDIAA 202 (733)
Q Consensus 177 ~Glv~~vv~~~~l~~~a~~~a~~~a~ 202 (733)
-|++|.+++++ +.+.+.++++..
T Consensus 225 sG~~d~v~~de---~ea~~~~r~~Ls 247 (258)
T d1xnya1 225 SGVAHHMAGDE---KDAVEYVKQLLS 247 (258)
T ss_dssp SSCCSEEESSH---HHHHHHHHHHHH
T ss_pred CCeeEEEeCCH---HHHHHHHHHHHH
Confidence 69999999643 344455554433
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=96.51 E-value=0.019 Score=55.40 Aligned_cols=139 Identities=15% Similarity=0.092 Sum_probs=87.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
--+++....+.+..+.+.+.... +-+|.+.- |.|+.+.+-... ...+...... + ..+. -..|+|++
T Consensus 102 GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~-----sgG~r~~eg~~~-----l~~~~~~~~~-~-~~ls-~~vP~i~v 167 (253)
T d1on3a1 102 GGSAGETQSTKVVETMEQALLTG-TPFLFFYD-----SGGARIQEGIDS-----LSGYGKMFFA-N-VKLS-GVVPQIAI 167 (253)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHHHH-H-HHHT-TTSCEEEE
T ss_pred cccceecccchhhhhHHHHhhcC-CCeEEEEe-----cCCCccccccee-----ccccceehHH-H-HHHh-ccceEEEE
Confidence 47899999999999999887654 45666642 233333321110 0011111111 1 1233 35899999
Q ss_pred eCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHH-------HHHc
Q 004726 105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE-------GWKL 177 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~e-------A~~~ 177 (733)
+.|+|.||+.....+||++|+.+++.+++.- +.... ..+|+.++.+| +...
T Consensus 168 v~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aG--------------------P~vVe--~~~ge~~~~eelGga~~h~~~s 225 (253)
T d1on3a1 168 IAGPCAGGASYSPALTDFIIMTKKAHMFITG--------------------PQVIK--SVTGEDVTADELGGAEAHMAIS 225 (253)
T ss_dssp EEEEEESGGGHHHHHSSEEEEETTCEEESSC--------------------HHHHH--HHHCCCCCHHHHHSHHHHHHTT
T ss_pred EecCcccceeeccchhhheeccccceEEecC--------------------cchhh--hhhCCcCChHhccCHHHhhhcc
Confidence 9999999999999999999999987776421 11111 13467777653 3457
Q ss_pred CCccEEcCcchHHHHHHHHHHHHHc
Q 004726 178 GLIDAVVTSEELLKVSRLWALDIAA 202 (733)
Q Consensus 178 Glv~~vv~~~~l~~~a~~~a~~~a~ 202 (733)
|.||.|++.++ .+.++++++..
T Consensus 226 G~iD~v~~~e~---~a~~~~r~lls 247 (253)
T d1on3a1 226 GNIHFVAEDDD---AAELIAKKLLS 247 (253)
T ss_dssp CCCSEEESSHH---HHHHHHHHHHH
T ss_pred ccceEEECCHH---HHHHHHHHHHH
Confidence 99999997754 35566655543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.50 E-value=0.0071 Score=54.59 Aligned_cols=69 Identities=23% Similarity=0.197 Sum_probs=46.8
Q ss_pred eEEEEcCCcCcHH-HHHHHHHC-CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc-
Q 004726 310 KVAVIGGGLMGSG-IATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 385 (733)
Q Consensus 310 kI~VIG~G~mG~~-iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l- 385 (733)
||||||+|.||.. ....+.+. +.+++++|+++++++...+. .+.....+++ +.+
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~ll~ 60 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------------------YRVSATCTDYRDVLQ 60 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------------------TTCCCCCSSTTGGGG
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh----------------------cccccccccHHHhcc
Confidence 7999999999976 45666555 56888999999887765321 1112223444 333
Q ss_pred CCCCEEEEeccCChH
Q 004726 386 KDVDMVIEAVIESVP 400 (733)
Q Consensus 386 ~~aDlVI~avpe~~~ 400 (733)
.+.|+|+.|+|....
T Consensus 61 ~~iD~V~I~tp~~~H 75 (167)
T d1xeaa1 61 YGVDAVMIHAATDVH 75 (167)
T ss_dssp GCCSEEEECSCGGGH
T ss_pred cccceeccccccccc
Confidence 368999999995444
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.44 E-value=0.015 Score=56.18 Aligned_cols=139 Identities=15% Similarity=0.073 Sum_probs=86.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.-+++....+.+..+.+.+..+. +-+|.+.- |+|+.+.+-... ...+.. ..... .......|+|++
T Consensus 102 gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~d-----sgGar~~eg~~~-----~~~~~~-~~~~~--~~~~~~vP~I~~ 167 (258)
T d2a7sa1 102 GGSLGEVYGEKIVKVQELAIKTG-RPLIGIND-----GAGARIQEGVVS-----LGLYSR-IFRNN--ILASGVIPQISL 167 (258)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSBCGGGCTHH-----HHHHHH-HHHHH--HHHTTTSCEEEE
T ss_pred CCccchhhhhHHHHHHHHHHhcC-CceEEEec-----cCCccccccccc-----ccchhh-HHHHH--HHHcCCCCEEEE
Confidence 47889999999999999887654 55666653 233333321100 000111 11111 234567999999
Q ss_pred eCCcccchhhHHhhhcCEEEEeC-CceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHH-------HH
Q 004726 105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WK 176 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~-~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA-------~~ 176 (733)
+.|+|.||+......||++|+.+ .+.+++ -|+...+ ..+|+.++++|. .+
T Consensus 168 v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~--------------------aGP~vV~--~~~ge~~~~eeLGga~~h~~~ 225 (258)
T d2a7sa1 168 IMGAAAGGHVYSPALTDFVIMVDQTSQMFI--------------------TGPDVIK--TVTGEEVTMEELGGAHTHMAK 225 (258)
T ss_dssp ECSCCBSGGGHHHHHSSEEEEEBTTBBCBS--------------------SCHHHHH--HHHCCCCCHHHHHBHHHHHHT
T ss_pred EecCcccHHHHHHHhccceEeecCceEEEc--------------------cChhHHH--HhcCCccChhhccCHhHhhhh
Confidence 99999999999999999999874 444432 1222222 247888888754 56
Q ss_pred cCCccEEcCcchHHHHHHHHHHHHHc
Q 004726 177 LGLIDAVVTSEELLKVSRLWALDIAA 202 (733)
Q Consensus 177 ~Glv~~vv~~~~l~~~a~~~a~~~a~ 202 (733)
.|++|.+++.+ +.+.+.++++..
T Consensus 226 sG~~D~v~~de---~~a~~~~r~~Ls 248 (258)
T d2a7sa1 226 SGTAHYAASGE---QDAFDYVRELLS 248 (258)
T ss_dssp SCCCSEEESSH---HHHHHHHHHHHH
T ss_pred ccccceEeCCH---HHHHHHHHHHHH
Confidence 79999999743 334444444443
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.012 Score=57.27 Aligned_cols=143 Identities=19% Similarity=0.206 Sum_probs=87.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
--+++....+.+..+++.+.+. .+-.|.++- |.|+.+.+-... ...+.... ..+ ..+.....|+|++
T Consensus 109 gGS~g~~~~~Ki~~a~e~A~~~-~lPlI~~~~-----sgG~r~~e~~~s-----l~~~~~~~-~~~-~~~~~~~vP~I~v 175 (263)
T d2f9yb1 109 GGSMGSVVGARFVRAVEQALED-NCPLICFSA-----SGGARMQEALMS-----LMQMAKTS-AAL-AKMQERGLPYISV 175 (263)
T ss_dssp TTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEE-----ESSBCGGGTHHH-----HHHHHHHH-HHH-HHHHHTTCCEEEE
T ss_pred ccccccchhhHHhHHHHHHHHc-CCCeEEEec-----CCCcccccccch-----hhcchhHH-HHH-HHHHhCCCceEEE
Confidence 4888999999999999988765 345666653 333444321110 00111111 112 2356678999999
Q ss_pred eCCcccchhh-HHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCC-----CHHHHHHcC
Q 004726 105 VEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI-----TSEEGWKLG 178 (733)
Q Consensus 105 v~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i-----~a~eA~~~G 178 (733)
+.|+|.||+. .+++++|++++.+.+.+++.- +... + ..+|+.+ +++-..+.|
T Consensus 176 ~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aG--------------------P~vv-e-~~~ge~~~e~~g~a~~~~~~G 233 (263)
T d2f9yb1 176 LTDPTMGGVSASFAMLGDLNIAEPKALIGFAG--------------------PRVI-E-QTVREKLPPGFQRSEFLIEKG 233 (263)
T ss_dssp EEEEEEHHHHTTGGGCCSEEEECTTCBEESSC--------------------HHHH-H-HHHTSCCCTTTTBHHHHGGGT
T ss_pred ecCCcchHHHhhhhhcCceEeeecceeeeccC--------------------HHHH-h-hhcCCcCChhhccHHHHHhCC
Confidence 9999999986 578888888888887776421 1111 1 1334444 444456789
Q ss_pred CccEEcCcchHHHHHHHHHHHHHc
Q 004726 179 LIDAVVTSEELLKVSRLWALDIAA 202 (733)
Q Consensus 179 lv~~vv~~~~l~~~a~~~a~~~a~ 202 (733)
+||.++++++..+...++.+-|..
T Consensus 234 ~iD~vv~~ee~~~~l~~~l~~L~~ 257 (263)
T d2f9yb1 234 AIDMIVRRPEMRLKLASILAKLMN 257 (263)
T ss_dssp CCSEECCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEECCHHHHHHHHHHHHHHhh
Confidence 999999877655444444444433
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.37 E-value=0.0019 Score=60.06 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=38.2
Q ss_pred ceEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHH
Q 004726 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~ 352 (733)
++|.|.| .|.+|..+|..|++.|.+|++.+|++++++...+.+.
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~ 68 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN 68 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence 5788888 5999999999999999999999999999887765543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.36 E-value=0.0059 Score=52.56 Aligned_cols=79 Identities=24% Similarity=0.238 Sum_probs=55.9
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|+|+ |.||..++..+.+.|++++.. |.+ ..+.+.+
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~----------------------------------------~~~~~~~ 41 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN----------------------------------------GVEELDS 41 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT----------------------------------------EEEECSC
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC----------------------------------------cHHHhcc
Confidence 7999996 999999999999999987643 322 1145678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE 433 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~ 433 (733)
+|+||+-.. ++...+.++...+ .+..+++.|++++-+++..
T Consensus 42 ~DVvIDFS~--p~~~~~~l~~~~~---~~~p~ViGTTG~~~~~~~~ 82 (128)
T d1vm6a3 42 PDVVIDFSS--PEALPKTVDLCKK---YRAGLVLGTTALKEEHLQM 82 (128)
T ss_dssp CSEEEECSC--GGGHHHHHHHHHH---HTCEEEECCCSCCHHHHHH
T ss_pred CCEEEEecC--HHHHHHHHHHHHh---cCCCEEEEcCCCCHHHHHH
Confidence 999999876 5555555554433 3455667888887665443
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.34 E-value=0.0059 Score=51.32 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=54.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc---Ccccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~l 385 (733)
++|.|||+|.+|..-|+.|++.|.+|++++.....-.. .+.+.+ ++.... +.+.+
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~------------~i~~~~~~~~~~dl 70 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEG------------MLTLVEGPFDETLL 70 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTT------------SCEEEESSCCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcC------------CceeeccCCCHHHh
Confidence 58999999999999999999999999999876643211 112222 222221 22568
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHH
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELE 410 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~ 410 (733)
.++++|+.+. ++..+...+++...
T Consensus 71 ~~~~lv~~at-~d~~~n~~i~~~a~ 94 (113)
T d1pjqa1 71 DSCWLAIAAT-DDDTVNQRVSDAAE 94 (113)
T ss_dssp TTCSEEEECC-SCHHHHHHHHHHHH
T ss_pred CCCcEEeecC-CCHHHHHHHHHHHH
Confidence 8999999875 46666666665443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.27 E-value=0.0071 Score=54.67 Aligned_cols=40 Identities=25% Similarity=0.205 Sum_probs=36.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~ 67 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK 67 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence 3799999999999999999999999999999999988764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.24 E-value=0.0092 Score=47.70 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=45.9
Q ss_pred ceEEEEcCCcCcH-HHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGS-GIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~-~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+||-|||.|-+|- ++|+.|.+.|++|.+.|+.+...-+ .+.+.|. .+....+.+.+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~----------~L~~~Gi-----------~i~~gh~~~~i~~ 60 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA----------YLRKLGI-----------PIFVPHSADNWYD 60 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH----------HHHHTTC-----------CEESSCCTTSCCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH----------HHHHCCC-----------eEEeeecccccCC
Confidence 3799999999987 7899999999999999998643222 1233331 1222334466788
Q ss_pred CCEEEEe
Q 004726 388 VDMVIEA 394 (733)
Q Consensus 388 aDlVI~a 394 (733)
+|+||.+
T Consensus 61 ~d~vV~S 67 (89)
T d1j6ua1 61 PDLVIKT 67 (89)
T ss_dssp CSEEEEC
T ss_pred CCEEEEe
Confidence 9999865
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.23 E-value=0.0025 Score=58.50 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=50.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|.|||+|-++++++..|.+.| +|++++|+.++++...+.+...+.... . ..+....-.....++
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~ 84 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF-------G------EEVKFSGLDVDLDGV 84 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH-------H------HHEEEECTTCCCTTC
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhh-------h------hhhhhhhhhhccchh
Confidence 57999999999999999998777 999999999998876554432211000 0 011111112456788
Q ss_pred CEEEEecc
Q 004726 389 DMVIEAVI 396 (733)
Q Consensus 389 DlVI~avp 396 (733)
|+||.|.|
T Consensus 85 dliIn~tp 92 (177)
T d1nvta1 85 DIIINATP 92 (177)
T ss_dssp CEEEECSC
T ss_pred hhhccCCc
Confidence 99999887
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0076 Score=54.23 Aligned_cols=69 Identities=10% Similarity=-0.023 Sum_probs=46.4
Q ss_pred eEEEEcCCcCcHH-HHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 310 KVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
||||||+|.||.. ....+... +++++ ++|+++++++...+.. .+...++. +.+
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~ 59 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW-----------------------RIPYADSLSSLA 59 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH-----------------------TCCBCSSHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc-----------------------cccccccchhhh
Confidence 7999999999986 45556554 66755 7899988766543211 12234444 345
Q ss_pred CCCCEEEEeccCChHH
Q 004726 386 KDVDMVIEAVIESVPL 401 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~ 401 (733)
++.|+|+.|+|.+...
T Consensus 60 ~~~D~V~I~tp~~~h~ 75 (164)
T d1tlta1 60 ASCDAVFVHSSTASHF 75 (164)
T ss_dssp TTCSEEEECSCTTHHH
T ss_pred hhcccccccccchhcc
Confidence 7899999999955443
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.14 E-value=0.011 Score=55.09 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=36.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|+|.|.|.+|..+|..|.+.|.+|+++|.+++.+...
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~ 66 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA 66 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence 479999999999999999999999999999999887654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0012 Score=53.66 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=31.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
+||+|+|+|..|.++|+.|.+.|.+|+++|.++.
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 5799999999999999999999999999998654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.09 E-value=0.0028 Score=61.83 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=37.0
Q ss_pred ceEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|||++| |+ +-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i 45 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI 45 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 578777 55 67999999999999999999999999988776554
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.07 E-value=0.002 Score=62.06 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=32.1
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
.-+||.|||+|.+|.+.|..|+++|++|+++|++.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34689999999999999999999999999999863
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.06 E-value=0.0054 Score=56.36 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=48.9
Q ss_pred eEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc-c-
Q 004726 310 KVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F- 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l- 385 (733)
||||||+|.||...+..+... +++|+ ++|+++++++...+. .+ +. ......++++. +
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~----------~~-~~--------~~~~~~~~~~~ll~ 63 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NN-YP--------ESTKIHGSYESLLE 63 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-CC--------TTCEEESSHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhc----------cc-cc--------cceeecCcHHHhhh
Confidence 799999999999999988876 66777 679999876654221 11 00 11233445532 2
Q ss_pred -CCCCEEEEeccCChHH
Q 004726 386 -KDVDMVIEAVIESVPL 401 (733)
Q Consensus 386 -~~aDlVI~avpe~~~~ 401 (733)
.+.|+|+.|.|.....
T Consensus 64 ~~~iD~v~I~tp~~~h~ 80 (184)
T d1ydwa1 64 DPEIDALYVPLPTSLHV 80 (184)
T ss_dssp CTTCCEEEECCCGGGHH
T ss_pred ccccceeeecccchhhc
Confidence 5689999999855443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.91 E-value=0.037 Score=50.30 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=35.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~ 70 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 70 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence 479999999999999999999997 7999999999988763
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.004 Score=57.28 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=36.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
++|.|||+|-+|.+++..|.+.|. ++++++|+++.++++.+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~ 60 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 60 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence 589999999999999999999987 79999999988877644
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.86 E-value=0.0042 Score=60.56 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=37.1
Q ss_pred eEEEE-c-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHH
Q 004726 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352 (733)
Q Consensus 310 kI~VI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~ 352 (733)
||++| | .+-||.++|..|++.|++|++.|++++.+++..+.++
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~ 47 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR 47 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 68877 4 4789999999999999999999999999888766553
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0026 Score=56.26 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=58.5
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHC-CC---eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
|+||||||+ |..|.-+.+.|+.+ .+ +++.+..+...-.. ...+ ..........+.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~------------~~~~--------~~~~~~~~~~~~ 60 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA------------PSFG--------GTTGTLQDAFDL 60 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC------------CGGG--------TCCCBCEETTCH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc------------cccc--------CCceeeecccch
Confidence 579999999 99999999877665 33 56666655322100 0000 000001111222
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
+.++++|++|.|+| .++-+++..++.+ ...++++++++|...+.
T Consensus 61 ~~~~~~DivF~a~~--~~~s~~~~~~~~~-~g~~~~VID~Ss~fR~~ 104 (146)
T d1t4ba1 61 EALKALDIIVTCQG--GDYTNEIYPKLRE-SGWQGYWIDAASSLRMK 104 (146)
T ss_dssp HHHHTCSEEEECSC--HHHHHHHHHHHHH-TTCCCEEEECSSTTTTC
T ss_pred hhhhcCcEEEEecC--chHHHHhhHHHHh-cCCCeecccCCcccccC
Confidence 45789999999998 5555565555543 23446788988876553
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.79 E-value=0.0064 Score=54.37 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=53.7
Q ss_pred eEEEEcCCcCcHH-HHHHHHHCC-CeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCC-HHHHHHHhhccccccCcccc
Q 004726 310 KVAVIGGGLMGSG-IATAHILNN-IYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~-iA~~l~~~G-~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l 385 (733)
||||||+|.+|.. +...+.+.. .+++ +.+++++....... .+.|.-. ....+..+ +....
T Consensus 6 rvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a---------~~~~i~~~~~~~d~l~-------~~~~~ 69 (157)
T d1nvmb1 6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA---------QRMGVTTTYAGVEGLI-------KLPEF 69 (157)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH---------HHTTCCEESSHHHHHH-------HSGGG
T ss_pred EEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh---------hhcCCcccccceeeee-------ecccc
Confidence 7999999999986 456655443 4665 45787653221100 1111100 00000000 01234
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
.+.|+|+.|+|.......... ....+.++.++++++.
T Consensus 70 ~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~a 106 (157)
T d1nvmb1 70 ADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTPA 106 (157)
T ss_dssp GGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECSTT
T ss_pred cccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEcccc
Confidence 679999999985555444332 2335788888898874
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.76 E-value=0.0027 Score=63.52 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=31.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
+||+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999865
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=95.66 E-value=0.027 Score=53.24 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=46.7
Q ss_pred eEEEEcCCcCcHH-HHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 310 KVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
||||||+|.||.. +...+... +.+|+ ++|+++++++...+.. + +.. ..+...+|+ +.+
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~----------~-i~~-------~~~~~~~d~~ell 96 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY----------G-VDP-------RKIYDYSNFDKIA 96 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT----------T-CCG-------GGEECSSSGGGGG
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhh----------c-ccc-------ccccccCchhhhc
Confidence 7999999999975 55555544 66776 8899999877653211 1 110 112234455 334
Q ss_pred --CCCCEEEEeccCChH
Q 004726 386 --KDVDMVIEAVIESVP 400 (733)
Q Consensus 386 --~~aDlVI~avpe~~~ 400 (733)
.+.|+|++|+|....
T Consensus 97 ~~~~iD~V~I~tp~~~H 113 (221)
T d1h6da1 97 KDPKIDAVYIILPNSLH 113 (221)
T ss_dssp GCTTCCEEEECSCGGGH
T ss_pred ccccceeeeeccchhhh
Confidence 368999999995544
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.61 E-value=0.065 Score=51.97 Aligned_cols=159 Identities=15% Similarity=0.180 Sum_probs=101.5
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
|.-|+|.. ..++++-.+...+.++.++.. ++-.|.|.-. +.|..|-+-+.. .......+++ .++.
T Consensus 74 vian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pGf~~G~~~E~~----------g~~~~ga~~~-~a~a 140 (271)
T d2a7sa2 74 IVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEYN----------GIIRRGAKLL-YAYG 140 (271)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHH----------CHHHHHHHHH-HHHH
T ss_pred EEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hhhhhhccHHHh----------hHHHHHHHHH-HHHH
Confidence 33456643 689999999999999988764 5777877543 346666544321 1234455666 6799
Q ss_pred cCCCcEEEEeCCcccchhhHHh----hhcCEEEEeCCceEeCccccCCCCCChhhhhhh-ccccCHH----------H-H
Q 004726 96 DCKKPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRL-PRLVGLS----------K-A 159 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~la----lacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l-~r~~G~~----------~-a 159 (733)
.+..|.|+.|-|.++|+|.... +.+|+++|.++++++.- +.-++...+ .+.+... + .
T Consensus 141 ~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igvM-------gpegaa~v~~~~~l~~~~~~~~~~~~~~~~ 213 (271)
T d2a7sa2 141 EATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVM-------GASGAVGFVYRQQLAEAAANGEDIDKLRLR 213 (271)
T ss_dssp HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTTTTTTGGGTSSCCTTSSTTH
T ss_pred hCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEeec-------CHHHHHHHHHHHhhhhhhhcccchHHHHHH
Confidence 9999999999999999875432 34799988888877752 222322222 2212110 0 1
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHH
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (733)
......-+.-++-.+.+.|++|.|+++.+..+.....
T Consensus 214 ~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~ 250 (271)
T d2a7sa2 214 LQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTA 250 (271)
T ss_dssp HHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHH
Confidence 1111233445778888999999999998875544433
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.024 Score=50.08 Aligned_cols=99 Identities=6% Similarity=-0.035 Sum_probs=58.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhH--hcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV--TRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~--~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.+|-|+|.|.+|..++..|.+.|++|+++|.+++......+.. ....+ -.|-.+..+.-. ...+.
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~---~~~~~~vi~Gd~~d~~~L~----------~a~i~ 70 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR---LGDNADVIPGDSNDSSVLK----------KAGID 70 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH---HCTTCEEEESCTTSHHHHH----------HHTTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHh---hcCCcEEEEccCcchHHHH----------Hhccc
Confidence 3689999999999999999999999999999988654432211 00000 011111110000 03467
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+||.||.+.+++...... ...+....+.-.+++-
T Consensus 71 ~a~~vi~~~~~d~~n~~~-~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 71 RCRAILALSDNDADNAFV-VLSAKDMSSDVKTVLA 104 (153)
T ss_dssp TCSEEEECSSCHHHHHHH-HHHHHHHTSSSCEEEE
T ss_pred cCCEEEEccccHHHHHHH-HHHHHHhCCCCceEEE
Confidence 899999998865543322 2233344444345554
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.59 E-value=0.013 Score=53.24 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=36.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
.||.|||+|..|..-+.....-|..|+++|++++++++..
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~ 69 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE 69 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence 4899999999999999999999999999999999887753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.05 Score=48.86 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=36.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~ 68 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 68 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence 379999999999999999999998 7999999999988763
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.51 E-value=0.0087 Score=57.98 Aligned_cols=81 Identities=23% Similarity=0.274 Sum_probs=51.1
Q ss_pred eEE-EEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHH---hHhcCCCCHHHHHHHhhccccccCccc
Q 004726 310 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRG---LVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 310 kI~-VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~---~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
|++ |.|+ +-||.++|..|++.|++|++.|++++.+++..+.+.+.... .+....-++++.+.....+. +.
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~~ 80 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK-----EK 80 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH-----HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHH-----HH
Confidence 455 4455 77999999999999999999999999988776554332211 01223334444444333221 33
Q ss_pred cCCCCEEEEec
Q 004726 385 FKDVDMVIEAV 395 (733)
Q Consensus 385 l~~aDlVI~av 395 (733)
+...|++|.+.
T Consensus 81 ~g~iDiLVnnA 91 (251)
T d1vl8a_ 81 FGKLDTVVNAA 91 (251)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 45667777665
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.31 E-value=0.0045 Score=59.86 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=32.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
.+||+|||+|.-|...|..|+++|++|+++|++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46899999999999999999999999999998754
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0088 Score=57.69 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=35.1
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|+++| |+ +-||..+|..|++.|.+|+++|+++++++...+.+
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~ 51 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC 51 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45555 66 66999999999999999999999999988765543
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.29 E-value=0.036 Score=50.46 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=45.3
Q ss_pred eEEEEcCCcCcHH-HHHHHHHCC--CeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSG-IATAHILNN--IYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~-iA~~l~~~G--~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
||||||+|.||.. ....+.+.+ ++|+ ++|+++++++...+. .+.....+++ +.
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~----------------------~~~~~~~~~~~el 62 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYEEL 62 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc----------------------ccccceeeeeecc
Confidence 7999999999987 466776643 4665 789999887654321 1222234455 33
Q ss_pred c--CCCCEEEEeccCChH
Q 004726 385 F--KDVDMVIEAVIESVP 400 (733)
Q Consensus 385 l--~~aDlVI~avpe~~~ 400 (733)
+ .+.|+|+.|+|.+..
T Consensus 63 l~~~~id~v~I~tp~~~h 80 (181)
T d1zh8a1 63 LESGLVDAVDLTLPVELN 80 (181)
T ss_dssp HHSSCCSEEEECCCGGGH
T ss_pred ccccccceeecccccccc
Confidence 3 468999999984443
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.29 E-value=0.0038 Score=52.88 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=32.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
++|.|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i 57 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI 57 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence 58999999999999999999999999999987753
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0083 Score=58.34 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=36.4
Q ss_pred eEEEE-c-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHH
Q 004726 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352 (733)
Q Consensus 310 kI~VI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~ 352 (733)
|+++| | .+-+|.++|..|++.|++|++.++++++++++.+.+.
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~ 55 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK 55 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 56655 4 4889999999999999999999999999888766543
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=95.25 E-value=0.13 Score=49.54 Aligned_cols=166 Identities=12% Similarity=0.103 Sum_probs=104.2
Q ss_pred CcEEEEEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 13 DGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 13 ~~i~~i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
+...-+.-|+|.. .+++++-.+...+.++.++.. ++-.|.|.-. +.|-.|.+-+. ....+...+++
T Consensus 66 G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E~----------~g~~~~ga~~~ 133 (264)
T d1vrga2 66 GKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEH----------GGIIRHGAKLL 133 (264)
T ss_dssp TEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH
T ss_pred CceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHHH----------HhHHHHHHHHH
Confidence 3333344467653 779999999999999888765 5677777543 34666554332 12334455667
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHh----hhcCEEEEeCCceEeCccccCCCCCChhhhhhhccc-c---C-H-HHHH
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V---G-L-SKAI 160 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~la----lacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~-~---G-~-~~a~ 160 (733)
.++..+..|.|+.|-|.++|+|..-. +.+|++++.+++.++. +..-+++..+-+. + . . ..-.
T Consensus 134 -~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~~~~ 205 (264)
T d1vrga2 134 -YAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEETRR 205 (264)
T ss_dssp -HHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHHH
T ss_pred -HHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHHHHH
Confidence 67999999999999999999876332 2589998888877764 3323333322221 1 0 0 0001
Q ss_pred HH--HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHH
Q 004726 161 EM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL 198 (733)
Q Consensus 161 ~l--~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~ 198 (733)
++ .+.-+.-++-.+.+.|++|.|+++.+.........+
T Consensus 206 ~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le 245 (264)
T d1vrga2 206 KLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALE 245 (264)
T ss_dssp HHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHH
Confidence 11 111122368888999999999999887665554443
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0058 Score=55.92 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=32.7
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
-+||+|||+|.-|..-|..|++.||+|+++|.+++
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 47899999999999999999999999999999764
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.23 E-value=0.0079 Score=58.76 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=37.2
Q ss_pred ceEEEE--cCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
.||++| |.+-+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l 49 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI 49 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 367877 5589999999999999999999999999988876554
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.18 E-value=0.0058 Score=59.30 Aligned_cols=43 Identities=21% Similarity=0.154 Sum_probs=36.5
Q ss_pred ceEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
.||++| |+ +-||.++|..|++.|++|+++|++++.++...+.+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l 54 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI 54 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 467776 55 78999999999999999999999999988765544
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.0095 Score=59.25 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=35.9
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~ 352 (733)
|++|| |+ +-||.++|..|++.|++|++.++++++++.+.+.+.
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~ 57 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQ 57 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 55555 55 779999999999999999999999999888765543
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.17 E-value=0.0042 Score=56.46 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=44.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 310 KVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
||+|||+|.||...+..+.+. +++++ ++|++++.... .......+. +...
T Consensus 5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 57 (170)
T d1f06a1 5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHAD 57 (170)
T ss_dssp EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTTT
T ss_pred eEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhcc
Confidence 799999999999999988875 56655 67877653211 112223333 4567
Q ss_pred CCCEEEEeccCChH
Q 004726 387 DVDMVIEAVIESVP 400 (733)
Q Consensus 387 ~aDlVI~avpe~~~ 400 (733)
++|+|++|.|....
T Consensus 58 ~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 58 DVDVLFLCMGSATD 71 (170)
T ss_dssp TCSEEEECSCTTTH
T ss_pred ccceEEEeCCCccc
Confidence 89999999996543
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.16 E-value=0.013 Score=58.98 Aligned_cols=89 Identities=16% Similarity=0.056 Sum_probs=57.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-C-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
++++|||+|.++...+..+... . .+|.+|++++++.+...+++. ..+ .....+..+++.
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~-------~~~------------~~~~~~~~~a~~ 186 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------DRG------------ISASVQPAEEAS 186 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH-------HTT------------CCEEECCHHHHT
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH-------hcC------------Cccccchhhhhc
Confidence 4699999999999999888753 3 389999999998877644321 111 111123336678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
+||+|+.|.+....+.. .+.+++++.|...
T Consensus 187 ~aDiV~taT~s~~P~~~------~~~l~~G~hv~~i 216 (320)
T d1omoa_ 187 RCDVLVTTTPSRKPVVK------AEWVEEGTHINAI 216 (320)
T ss_dssp SSSEEEECCCCSSCCBC------GGGCCTTCEEEEC
T ss_pred cccEEEEeccCcccccc------hhhcCCCCeEeec
Confidence 89999988874333211 1345666655443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.0033 Score=53.83 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=32.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
+++.|||+|.+|.-+|..|++.|.+|+++++++.-
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~ 58 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI 58 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence 68999999999999999999999999999987643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.06 E-value=0.013 Score=57.03 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=35.2
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|++|| |+ +-||.++|..|++.|++|++.|++++.++...+.+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~ 48 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV 48 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45555 55 67999999999999999999999999988765544
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.0042 Score=52.57 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=31.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
+||.|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence 5899999999999999999999999999999764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.0099 Score=57.27 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=34.9
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
|++|| |+ +-||.++|..|++.|++|++.|++++.++...+.
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~ 47 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDY 47 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 56666 54 7899999999999999999999999988776543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.03 E-value=0.0059 Score=56.22 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=31.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e 342 (733)
+||+|||+|..|...|..|++.|+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 589999999999999999999998 5999998764
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.99 E-value=0.0054 Score=59.84 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=30.1
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
.|.|||+|.+|.++|..|+++|++|+++|+++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 39999999999999999999999999999864
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.98 E-value=0.004 Score=52.79 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=31.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
+||.|||+|.+|.-+|..|++.|.+|+++++.+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence 5899999999999999999999999999998653
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=94.97 E-value=0.017 Score=57.12 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=36.5
Q ss_pred eEEEE--cCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|++|| |+|.+|.++|..|++.|++|++.|++.++++...+.+
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l 69 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI 69 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 66666 5699999999999999999999999999988776554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.92 E-value=0.0088 Score=58.28 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=35.1
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|+++| |+ +-||.++|..|++.|++|++.|++++.+++..+.+
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 49 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV 49 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45555 66 67999999999999999999999999988776544
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.92 E-value=0.012 Score=53.47 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=35.1
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (733)
+|.|+|+|.+|...++.+...|. +|++.|+++++++.+.
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~ 69 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK 69 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred EEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence 69999999999999999998997 7999999999988763
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.01 Score=57.58 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=36.8
Q ss_pred eEEEE--cCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHH
Q 004726 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352 (733)
Q Consensus 310 kI~VI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~ 352 (733)
|+++| |.+-+|.++|..|++.|++|++.+++++.+++..+.++
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~ 56 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ 56 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 67777 55889999999999999999999999999888766543
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.82 E-value=0.13 Score=49.51 Aligned_cols=161 Identities=15% Similarity=0.186 Sum_probs=101.1
Q ss_pred EeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhc
Q 004726 19 TLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED 96 (733)
Q Consensus 19 ~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (733)
.-|+|. ..+++++-.+...+.++.++.. ++-.|.|.-. +.|-.|.+-+. ....+...+++ .++.+
T Consensus 70 ia~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~-pGf~~G~~~E~----------~g~~~~ga~~~-~a~a~ 136 (263)
T d1xnya2 70 VANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PGFLPGVDQEH----------DGIIRRGAKLI-FAYAE 136 (263)
T ss_dssp EEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHHH
T ss_pred EecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc-cccccchhHHH----------HhHHHHHHHHH-HHHHc
Confidence 345663 3799999999999999888765 4667777543 33666554332 12334455666 67999
Q ss_pred CCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC----------HHHHHHH
Q 004726 97 CKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG----------LSKAIEM 162 (733)
Q Consensus 97 ~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G----------~~~a~~l 162 (733)
+..|.|+.|-|.++|||..... ..|+++|.+++.++. ++.-++...+-+.-. .....+.
T Consensus 137 ~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~pe~aa~il~~~~~~~a~~~~~~~~~~~~~~ 209 (263)
T d1xnya2 137 ATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRARLIQE 209 (263)
T ss_dssp CCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHSCCTTCSSSHHHHHHH
T ss_pred cCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 9999999999999998765433 368998888887775 333333333322100 0000010
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHH
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI 200 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~ 200 (733)
. .-...++-.+...|++|.|+++.+.........+.+
T Consensus 210 ~-~~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~l 246 (263)
T d1xnya2 210 Y-EDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQL 246 (263)
T ss_dssp H-HHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHHH
T ss_pred H-HHHhcCHHHHHHcccCCcccCHHHHHHHHHHHHHHH
Confidence 0 111235677888999999999998866555544443
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.74 E-value=0.022 Score=51.73 Aligned_cols=84 Identities=19% Similarity=0.154 Sum_probs=46.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC-CCeeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHH-HhhccccccCc-c
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN-ALKMLKGVLDY-S 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~-G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~-~~~~i~~~~~~-~ 383 (733)
|-||||.|.|.||+.+++.+... .++|+.+ |.++........ ......+ ...+.... .-..+....+. +
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~i~v~g~~~~ 73 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH------RRGIRIY-VPQQSIKKFEESGIPVAGTVED 73 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH------HTTCCEE-CCGGGHHHHHTTTCCCCCCHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhc------ccCccee-ccCccceeccccceecCCchhh
Confidence 45899999999999999999976 4677765 565543222111 0000000 11111111 11123323333 3
Q ss_pred ccCCCCEEEEeccCC
Q 004726 384 EFKDVDMVIEAVIES 398 (733)
Q Consensus 384 ~l~~aDlVI~avpe~ 398 (733)
...++|+||||.|-.
T Consensus 74 ~~~~vDiViecTG~f 88 (178)
T d1b7go1 74 LIKTSDIVVDTTPNG 88 (178)
T ss_dssp HHHHCSEEEECCSTT
T ss_pred hhhcCCEEEECCCCc
Confidence 457899999999943
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.64 E-value=0.0087 Score=60.04 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=32.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
.+||+|||+|.-|.+.|..|++.|++|+++|.+..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 47999999999999999999999999999998753
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.01 Score=57.39 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=32.9
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
|+++| |+ +-||.++|..|++.|++|++.|++++.++...
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~ 47 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALE 47 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 45555 55 88999999999999999999999998877653
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.0064 Score=47.13 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
|++|+|||.|-.|.-++....+-|++|+++|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 57999999999999999999999999999998754
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.62 E-value=0.012 Score=50.05 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=32.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
++|+|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~ 65 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 65 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence 58999999999999999999999999999987643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.59 E-value=0.015 Score=56.91 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=35.5
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|+++| |+ +-||.++|..|++.|++|++.|++++.+++..+.+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i 48 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI 48 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55666 44 77999999999999999999999999988876554
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.58 E-value=0.01 Score=58.06 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=34.6
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
|+++| |+ +-+|.++|..|++.|++|++.|++++.+++..+.
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~ 49 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNN 49 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 56655 54 7799999999999999999999999988876544
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.031 Score=46.55 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=32.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
.||+|||.|..|.-+|....+-|++|+++|.+++.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 58999999999999999999999999999998763
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.041 Score=49.31 Aligned_cols=39 Identities=21% Similarity=0.064 Sum_probs=34.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
.+|.|+|+|.+|...++.+...|.+|++.|.++++.+.+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a 70 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA 70 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence 479999999999999998888999999999999987664
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.51 E-value=0.016 Score=56.75 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=35.7
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|+++| |+ +-||.++|..|++.|++|++.|++++.+++..+.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l 49 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII 49 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 56666 54 88999999999999999999999999988876544
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.47 E-value=0.015 Score=56.42 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=51.0
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHh---HhcCCCCHHHHHHHhhccccccCccc
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL---VTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~---~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
|+++| |+ +-+|.++|..|++.|++|++.+++++.+++..+.+.+..... +....-++++.+.....+. +.
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~-----~~ 84 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID-----AD 84 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH-----HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH-----HH
Confidence 66655 55 679999999999999999999999988877665543322111 1222333444444333222 33
Q ss_pred cCCCCEEEEec
Q 004726 385 FKDVDMVIEAV 395 (733)
Q Consensus 385 l~~aDlVI~av 395 (733)
+...|++|.+.
T Consensus 85 ~g~iDilVnnA 95 (260)
T d1h5qa_ 85 LGPISGLIANA 95 (260)
T ss_dssp SCSEEEEEECC
T ss_pred hCCCcEecccc
Confidence 45667777655
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.016 Score=56.17 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=35.3
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|+++| |+ +-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l 47 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL 47 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55555 55 77999999999999999999999999988765543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=94.41 E-value=0.013 Score=56.79 Aligned_cols=40 Identities=33% Similarity=0.305 Sum_probs=34.5
Q ss_pred eEEEE-c-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
|+++| | .+-||.++|..|++.|++|++.+++++.++.+.+
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 48 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK 48 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 66766 4 5789999999999999999999999998877654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.0073 Score=51.72 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=31.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
++|.|||+|.+|.-+|..|++.|.+|+++++++.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 5899999999999999999999999999999754
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=94.39 E-value=0.12 Score=49.75 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=102.6
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
|.=|+|. ..+++++-.+...+.++.++.. ++-.|.|.-. +.|..|-+-+. ....+...+++ .++.
T Consensus 71 vian~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E~----------~g~i~~ga~~~-~a~a 137 (264)
T d1on3a2 71 IVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEY----------GGIIRHGAKML-YAYS 137 (264)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred EEeccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHHHH----------HHHHHHHHHHH-HHHH
Confidence 3346664 4889999999999988888764 5777777543 34666655332 12334455677 6799
Q ss_pred cCCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeCccccCCCCCChhhhhhhccc-c---CHHHH--HHHH--
Q 004726 96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V---GLSKA--IEMM-- 163 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~-~---G~~~a--~~l~-- 163 (733)
++.+|.|+.|-|.++|+|..-.. .+|++++.+++.++ .++.-|+...+-+. + ....+ .+.+
T Consensus 138 ~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e 210 (264)
T d1on3a2 138 EATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEE 210 (264)
T ss_dssp HCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHH
T ss_pred cCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhhhhHHHHHH
Confidence 99999999999999998754333 46777777766665 44444444333221 1 00000 1111
Q ss_pred HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
..-+.-++-.|.+.|+||.|+++.+.........+.+.
T Consensus 211 ~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~~ 248 (264)
T d1on3a2 211 YQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYA 248 (264)
T ss_dssp HHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGG
T ss_pred HHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHHh
Confidence 11122357788889999999999887665544444433
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.35 E-value=0.01 Score=58.07 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=31.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
|||+|||+|.-|.+-|..|+++|++|+++|.++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 689999999999999999999999999999764
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=94.33 E-value=0.0083 Score=50.90 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=31.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
++|.|||+|.+|.-+|..|++.|.+|+++.+++.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence 6899999999999999999999999999998754
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.28 E-value=0.016 Score=49.20 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=33.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~ 345 (733)
++|.|||+|.+|.-+|..|++.|.+|+++++++.-+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~ 67 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS 67 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeecccccc
Confidence 5799999999999999999999999999999876543
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.19 E-value=0.012 Score=59.46 Aligned_cols=36 Identities=33% Similarity=0.376 Sum_probs=32.0
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChH
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSE 342 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e 342 (733)
.|+||+|||+|.-|...|..|++.| ++|++++++.+
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 5789999999999999999998876 59999999753
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.16 E-value=0.007 Score=50.98 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=32.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
+++.|||+|..|.-+|..|++.|++|+++++.+.-
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i 56 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI 56 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence 58999999999999999999999999999997643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.14 E-value=0.0096 Score=58.54 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=32.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
+|.|||+|.-|..+|..|++.|++|+++|++++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 7999999999999999999999999999998754
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.13 E-value=0.015 Score=56.31 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=34.5
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
|+++| |+ +-||.++|..|++.|++|++.|++++.++...+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAE 48 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 55555 55 8899999999999999999999999988776543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.12 E-value=0.014 Score=56.60 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=32.2
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++.|.|+ +-||.++|..|++.|++|++.|++++.+++.
T Consensus 7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~ 45 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT 45 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4455566 6799999999999999999999999887764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=94.07 E-value=0.034 Score=53.86 Aligned_cols=42 Identities=31% Similarity=0.299 Sum_probs=33.2
Q ss_pred eEEEE--cCCcCcHHHHHHHHHCCCeeEEEeCC-hHHHHHHHHHH
Q 004726 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI--G~G~mG~~iA~~l~~~G~~V~~~d~~-~e~~~~~~~~i 351 (733)
|+++| |.+-||.++|..|++.|++|++.+++ ++.+++..+.+
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~ 49 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGL 49 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHH
Confidence 67777 44779999999999999999999997 45566654443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.00 E-value=0.11 Score=50.13 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=35.1
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|++|| |+ +-||.++|..|++.|++|++.|++++.+++..+.+
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 52 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW 52 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55555 55 67999999999999999999999999988775543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.95 E-value=0.016 Score=49.15 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=31.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
++|.|||+|.+|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 4799999999999999999999999999998764
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.90 E-value=0.099 Score=45.18 Aligned_cols=86 Identities=13% Similarity=0.041 Sum_probs=61.5
Q ss_pred ceEEEEcC----CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
++|+|||+ +..|..++..|.+.||+|+.++...+.+ ....+..++++
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----------------------------~G~~~~~sl~d 70 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----------------------------LGRKCYPSVLD 70 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----------------------------CCCcccccccc
Confidence 58999997 5689999999999999999888754321 12344555555
Q ss_pred c-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 385 l-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
+ ...|+|+.++| ++...++++++.+.- ...++ ...++..
T Consensus 71 lp~~iD~v~i~vp--~~~~~~~~~e~~~~g-~k~v~-~~~G~~~ 110 (139)
T d2d59a1 71 IPDKIEVVDLFVK--PKLTMEYVEQAIKKG-AKVVW-FQYNTYN 110 (139)
T ss_dssp CSSCCSEEEECSC--HHHHHHHHHHHHHHT-CSEEE-ECTTCCC
T ss_pred cCccceEEEEEeC--HHHHHHHHHHHHHhC-CCEEE-EeccccC
Confidence 4 46899999999 888888888877653 33444 3444444
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.88 E-value=0.016 Score=49.22 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=30.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (733)
++++|||+|.+|.-+|..|.+.|.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 47999999999999999999999999999876
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.81 E-value=0.008 Score=51.32 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=32.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (733)
+++.|||+|.+|.-+|..|.+.|.+|+++++++.-+
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l 61 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV 61 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 589999999999999999999999999999976543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.78 E-value=0.013 Score=57.14 Aligned_cols=32 Identities=34% Similarity=0.466 Sum_probs=30.4
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
+|+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 69999999999999999999999999999864
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=93.77 E-value=0.071 Score=51.27 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=33.4
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
|+++| |+ +-||.++|..|++.|++|++.|++++.+++..
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~ 47 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA 47 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 56666 54 77999999999999999999999998877653
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.76 E-value=0.07 Score=45.91 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=51.8
Q ss_pred eEEEEcC-CcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 310 KVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
||+|+|+ |.||..++..+.+. +++++ .+|+.... .. ....
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~~------------------------------------~~~~ 43 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-SL------------------------------------LTDG 43 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-HH------------------------------------HHTT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-hh------------------------------------hccc
Confidence 7999995 99999999887664 66755 44543210 00 0124
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE 433 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~ 433 (733)
++|+||+... ++...+.++.. +..+..+++.|++++..++..
T Consensus 44 ~~DvvIDFS~--p~~~~~~~~~~---~~~~~~~ViGTTG~~~~~~~~ 85 (135)
T d1yl7a1 44 NTEVVIDFTH--PDVVMGNLEFL---IDNGIHAVVGTTGFTAERFQQ 85 (135)
T ss_dssp TCSEEEECCC--TTTHHHHHHHH---HHTTCEEEECCCCCCHHHHHH
T ss_pred cCCEEEEccc--HHHHHHHHHHH---HhcCCCEEEeccccchhHHHH
Confidence 6899999875 44444444433 334666777888888665443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.73 E-value=0.19 Score=48.26 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=34.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
|+|-|.|+ +-||.++|..|++.|++|++.+++++.++.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~ 48 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE 48 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 34566665 889999999999999999999999998887654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.70 E-value=0.02 Score=49.38 Aligned_cols=37 Identities=32% Similarity=0.534 Sum_probs=33.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~ 345 (733)
++|.|||+|.+|.-+|..|++.|.+|+++++.+.-+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~ 72 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE 72 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc
Confidence 5899999999999999999999999999999766443
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=93.69 E-value=0.03 Score=50.50 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=27.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC-CeeEEE-eCChH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLK-EVNSE 342 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~-d~~~e 342 (733)
|.||||-|.|.||+.+.+.+...+ .+|+.+ |+++.
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~ 37 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD 37 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence 579999999999999999988775 566644 55543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=93.65 E-value=0.089 Score=52.75 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=34.5
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|+.++..|+++|++|++..|+.+..+..
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~ 51 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL 51 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence 68999977 9999999999999999999999998775543
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=93.64 E-value=0.036 Score=55.64 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=49.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|.++..-+..+.. .++ +|.+||+++++.++..+++. +...+ .+..+++. +++
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~-------~~~g~----------~v~~~~s~~eav 191 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK-------EYSGL----------TIRRASSVAEAV 191 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT-------TCTTC----------EEEECSSHHHHH
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh-------hccCC----------CceecCCHHHHH
Confidence 479999999999988887754 344 89999999998877644321 11000 23345555 678
Q ss_pred CCCCEEEEecc
Q 004726 386 KDVDMVIEAVI 396 (733)
Q Consensus 386 ~~aDlVI~avp 396 (733)
++||+|+.|.+
T Consensus 192 ~~ADIi~t~Ta 202 (340)
T d1x7da_ 192 KGVDIITTVTA 202 (340)
T ss_dssp TTCSEEEECCC
T ss_pred hcCCceeeccc
Confidence 89999988774
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.63 E-value=0.016 Score=49.01 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=32.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
++|+|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~ 57 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL 57 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence 58999999999999999999999999999997654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.58 E-value=0.14 Score=48.89 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=33.1
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
|+++| |+ +-||.++|..|++.|++|++.|++++.++...
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 47 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA 47 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 55655 65 77999999999999999999999998877653
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=0.021 Score=56.51 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=31.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
-.||+|||+|.-|.+-|..|+++|++|++++.+.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3589999999999999999999999999999764
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.043 Score=52.56 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=33.8
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
+|-|.|+ +-||.++|+.|++.|++|++.|++++.++...+
T Consensus 9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 4555566 789999999999999999999999998877644
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.13 Score=49.72 Aligned_cols=40 Identities=28% Similarity=0.217 Sum_probs=33.6
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++-|.|+ +-||.++|..|++.|++|++.+|+++.+++..+
T Consensus 16 ~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 16 KVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3444466 669999999999999999999999999887644
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.45 E-value=0.035 Score=50.15 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=33.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCe-eEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...++.+...|.. |++.|+++++++.++
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~ 70 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 70 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence 4799999999999999999888875 567799999888764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.45 E-value=0.035 Score=53.15 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=33.4
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
|+++| |+ +-+|.++|+.|++.|++|++.|++++.++...+
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE 47 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45555 65 679999999999999999999999988877543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.44 E-value=0.052 Score=46.40 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=57.2
Q ss_pred ceEEEEcC----CcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcc
Q 004726 309 RKVAVIGG----GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (733)
Q Consensus 309 ~kI~VIG~----G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (733)
++|+|||+ |.+|..+.+.|.+.| ++|+.++...+.+ ..+....+++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----------------------------~G~~~y~sl~ 59 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----------------------------QGVKAYKSVK 59 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----------------------------TTEECBSSTT
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----------------------------CCeEeecchh
Confidence 58999997 788888999987766 6888888765321 2344455665
Q ss_pred cc-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEE
Q 004726 384 EF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 384 ~l-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii 419 (733)
++ ...|+++.++| .+...++++++.+.=-+..++
T Consensus 60 dlp~~vDlvvi~vp--~~~~~~~~~~~~~~g~~~~vi 94 (129)
T d2csua1 60 DIPDEIDLAIIVVP--KRFVKDTLIQCGEKGVKGVVI 94 (129)
T ss_dssp SCSSCCSEEEECSC--HHHHHHHHHHHHHHTCCEEEE
T ss_pred hcCCCCceEEEecC--hHHhHHHHHHHHHcCCCEEEE
Confidence 55 45899999999 777778888876654343444
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.44 E-value=0.062 Score=44.99 Aligned_cols=73 Identities=25% Similarity=0.280 Sum_probs=54.4
Q ss_pred ceEEEEcC----CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
++|+|||+ +..|..+...|.+.||+|+.++.+.+.+ ..+....++++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~ 52 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE 52 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence 68999996 6779999999999999998887654321 12444455555
Q ss_pred c-CCCCEEEEeccCChHHHHHHHHHHHHh
Q 004726 385 F-KDVDMVIEAVIESVPLKQKIFSELEKA 412 (733)
Q Consensus 385 l-~~aDlVI~avpe~~~~k~~v~~~l~~~ 412 (733)
+ ...|+++.++| .+...+++++..+.
T Consensus 53 lp~~~D~vvi~vp--~~~~~~~l~~~~~~ 79 (116)
T d1y81a1 53 LPKDVDVIVFVVP--PKVGLQVAKEAVEA 79 (116)
T ss_dssp SCTTCCEEEECSC--HHHHHHHHHHHHHT
T ss_pred ccccceEEEEEeC--HHHHHHHHHHHHhc
Confidence 5 45699999999 77777888876554
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.03 E-value=0.022 Score=56.19 Aligned_cols=32 Identities=16% Similarity=0.491 Sum_probs=29.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
+|.|||+|.+|.++|..|++.|. +|+++|+++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 69999999999999999999996 799999874
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.02 E-value=0.022 Score=54.05 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=29.7
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
+|+|||+|.-|.+.|..|+++|+ +|+++|.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 69999999999999999999996 799999864
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=93.01 E-value=0.078 Score=46.29 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=56.8
Q ss_pred eEEEEcC-CcCcHHHHHHHHHC-CC---eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 310 KVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
||||||+ |..|.-+.+.|.++ .| ++..+..+... .+ ....+. ....+....+.+.
T Consensus 2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk-----------~~~~~~--------~~~~~~~~~~~~~ 61 (147)
T d1mb4a1 2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VP-----------APNFGK--------DAGMLHDAFDIES 61 (147)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SB-----------CCCSSS--------CCCBCEETTCHHH
T ss_pred EEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-cc-----------ccccCC--------cceeeecccchhh
Confidence 7999998 99999999877764 33 45544443211 00 000000 0001111123355
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
++++|+||.|+| ..+.+++..++.+. ...++|++++|...+.
T Consensus 62 ~~~~DvvF~alp--~~~s~~~~~~l~~~-g~~~~VIDlSsdfR~~ 103 (147)
T d1mb4a1 62 LKQLDAVITCQG--GSYTEKVYPALRQA-GWKGYWIDAASTLRMD 103 (147)
T ss_dssp HTTCSEEEECSC--HHHHHHHHHHHHHT-TCCSEEEESSSTTTTC
T ss_pred hccccEEEEecC--chHHHHHhHHHHHc-CCceEEEeCCcccccc
Confidence 789999999999 55556666665443 3345788988876543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.92 E-value=0.056 Score=48.18 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=35.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+|.+|...++.+...|.+|++.|+++++++.+
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a 67 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA 67 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh
Confidence 379999999999999999999999999999999998765
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=92.78 E-value=0.051 Score=52.61 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=31.9
Q ss_pred eEEEE--cCCcCcHHHHHHHHHCCCeeEEEeCChH-HHHHHHH
Q 004726 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIK 349 (733)
Q Consensus 310 kI~VI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~ 349 (733)
|++|| |.+-||.++|..|++.|++|++.+++.+ .++...+
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~ 50 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLE 50 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH
Confidence 66766 4588999999999999999999999864 4554433
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.74 E-value=0.018 Score=49.13 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=32.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
+++.|||+|.+|.-+|..|.+.|.+|+++++.+.-
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i 61 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL 61 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence 58999999999999999999999999999987643
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.024 Score=56.22 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=31.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
|..|.|||+|.-|.++|..|++.|++|+++|.+..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 45799999999999999999999999999998753
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=0.06 Score=48.19 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=54.6
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-+ ..|.++|..|++.|..|+.++.....+. +.+++
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~ 82 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK 82 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence 579999995 5799999999999999999997654322 23578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
+|+||.++...--++ ...+++++++++...+
T Consensus 83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvgi~ 113 (170)
T d1a4ia1 83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGIN 113 (170)
T ss_dssp CSEEEECCCCTTCBC-------GGGSCTTCEEEECCCB
T ss_pred ccchhhccccccccc-------cccccCCCeEeccCcc
Confidence 999999997332222 2467899988875443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.58 E-value=0.066 Score=51.71 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=35.4
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
|+++| |+ +-||.++|..|++.|++|++.+++++.+++..+.+
T Consensus 9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~ 52 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW 52 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 56666 54 77999999999999999999999999988776544
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.54 E-value=0.03 Score=54.50 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=29.3
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
|.|||+|.+|.+.|..|+++|++|+++|+..
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 8999999999999999999999999999853
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.041 Score=52.71 Aligned_cols=40 Identities=25% Similarity=0.154 Sum_probs=34.0
Q ss_pred eEEEE-c-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
||+|| | ++.||.++|..|++.|++|++.|++++.++...+
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 67766 4 4789999999999999999999999988776544
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.46 E-value=0.0079 Score=57.19 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=25.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEE
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLK 337 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~ 337 (733)
||+|||+|.+|.+.|..|+++|++|+++
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~ 29 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQP 29 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEE
Confidence 7999999999999999999999875443
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.039 Score=49.11 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=52.1
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-+. +|.++|..|.+.|.+|++++.....+. +.+++
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~-------------------------------------~~~~~ 80 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN 80 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred ceEEEEeccccccHHHHHHHHHhhccccccccccchhH-------------------------------------HHHhh
Confidence 5799999965 899999999999999999987554322 23467
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.|+.-.--++ ...+++++++++..
T Consensus 81 ADivI~a~G~p~~i~-------~~~vk~g~vvIDvG 109 (166)
T d1b0aa1 81 ADLLIVAVGKPGFIP-------GDWIKEGAIVIDVG 109 (166)
T ss_dssp CSEEEECSCCTTCBC-------TTTSCTTCEEEECC
T ss_pred hhHhhhhccCccccc-------ccccCCCcEEEecC
Confidence 999999996222222 23578888887643
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.41 E-value=0.077 Score=50.61 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=33.2
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++-|.|+ +-+|.++|..|++.|++|++.+++++.+++..+
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 47 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3445566 679999999999999999999999988776544
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.37 E-value=0.029 Score=50.80 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=35.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...++.+...|. .|++.|+++++++.++
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~ 70 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 70 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence 479999999999999999999997 6889999999887763
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=92.35 E-value=0.15 Score=47.96 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=36.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|+|-|.|.+|..+|+.|.+.|..|++.|.++..++..
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~ 78 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA 78 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHH
Confidence 479999999999999999999999999999999887664
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=92.34 E-value=0.052 Score=52.08 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=30.4
Q ss_pred eEEEE-c-CCcCcHHHHHHHHHCCCeeEEEeCChHHHH
Q 004726 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (733)
Q Consensus 310 kI~VI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~ 345 (733)
|+++| | .+-||.++|+.|++.|++|++.|++++..+
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~ 43 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE 43 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 45555 5 588999999999999999999999987654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.31 E-value=0.04 Score=49.40 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=35.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~ 68 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM 68 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence 4799999999999988888888999999999999887753
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.22 E-value=0.28 Score=44.00 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=36.4
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
+|.|+|+|.+|...++.+...|. +|+++|+++++++.+++
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence 69999999999999999999995 89999999999988754
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.20 E-value=0.058 Score=51.03 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=33.1
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
.-++|.|||+|.-|...|..|++.|++|+++|.+++
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 447899999999999999999999999999998764
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.17 E-value=0.076 Score=49.53 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=31.2
Q ss_pred CcceEEEEcC-CcCcHHHHHHHHHCCCeeEE--EeCChHHHH
Q 004726 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVL--KEVNSEYLL 345 (733)
Q Consensus 307 ~~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~--~d~~~e~~~ 345 (733)
.|++|.|.|+ |.+|+.++..|++.|++|++ ..|++++..
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~ 43 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE 43 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence 3678999985 99999999999999987555 456776543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=92.04 E-value=0.033 Score=53.51 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=28.9
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
|+++| |+ +-||.++|..|++.|++|++.|++++.
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~ 41 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP 41 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence 56666 55 779999999999999999999998753
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.18 Score=48.72 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=36.5
Q ss_pred ceEEEE--cCCcCcHHHHHHHHHC-CCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVI--GGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VI--G~G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i 351 (733)
++|+|| |.+-+|..+|+.|++. |..|++.+|++++++.+.+.+
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l 48 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL 48 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence 479988 5688999999999975 899999999999988876543
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=91.84 E-value=0.043 Score=48.97 Aligned_cols=104 Identities=16% Similarity=0.077 Sum_probs=60.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
-||+|+|+ |.||+.++..+.+. +++++ ++|+.....-. ...|.+... ....+..++++ +.
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g------------~d~~~~~~~----~~~~~~~~~~~~~~ 68 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELAGA----GKTGVTVQSSLDAV 68 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSSSS----SCCSCCEESCSTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhcc------------chhhhhhcc----ccCCceeeccHHHH
Confidence 47999996 99999999988775 66765 44543221000 000100000 00123334455 45
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE 433 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~ 433 (733)
+..+|+||+... ++...+.++.. ...+..+++.|+++...++..
T Consensus 69 ~~~~DViIDFs~--p~~~~~~~~~a---~~~~~~~ViGTTG~~~~~~~~ 112 (162)
T d1diha1 69 KDDFDVFIDFTR--PEGTLNHLAFC---RQHGKGMVIGTTGFDEAGKQA 112 (162)
T ss_dssp TTSCSEEEECSC--HHHHHHHHHHH---HHTTCEEEECCCCCCHHHHHH
T ss_pred hcccceEEEecc--HHHHHHHHHHH---HhccceeEEecCCCcHHHHHH
Confidence 688999999876 66555554433 334566777888887665443
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=91.82 E-value=0.27 Score=47.57 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=32.4
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
|+++| |+ +-||.++|..|++.|++|++.|++++++++.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~ 45 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAEL 45 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 45555 55 8999999999999999999999999887664
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.69 E-value=0.044 Score=51.33 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=29.8
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 8999999999999999999999999999975
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.67 E-value=0.1 Score=46.83 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=35.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|-+|...++.++..|. .|++.|+++++.+.+.
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~ 70 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 70 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH
Confidence 369999999999999999999885 8999999999988753
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.66 E-value=0.071 Score=46.49 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=57.5
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC---eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccCcc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYS 383 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 383 (733)
.||||||+ |..|.-+.+.|.+.+| ++..+..+...-+. +... ...+.. ..+.+
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~------------i~~~----------~~~~~~~~~~~~ 60 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR------------MGFA----------ESSLRVGDVDSF 60 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE------------EEET----------TEEEECEEGGGC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcc------------eeec----------cccchhccchhh
Confidence 37999998 9999999999987665 56655443321110 0000 001111 11225
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
.+.++|+++.|+| ...-.++..++ ...+++|++++|....
T Consensus 61 ~~~~~d~vf~a~p--~~~s~~~~~~~---~~~g~~VID~Ss~fR~ 100 (144)
T d2hjsa1 61 DFSSVGLAFFAAA--AEVSRAHAERA---RAAGCSVIDLSGALEP 100 (144)
T ss_dssp CGGGCSEEEECSC--HHHHHHHHHHH---HHTTCEEEETTCTTTT
T ss_pred hhccceEEEecCC--cchhhhhcccc---ccCCceEEeechhhcc
Confidence 6789999999998 55545555444 3467888888887653
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=91.65 E-value=0.25 Score=46.61 Aligned_cols=39 Identities=21% Similarity=0.094 Sum_probs=28.4
Q ss_pred ceEEEEcCCcCcHHHHH----HHHH--CCCeeE-EEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIAT----AHIL--NNIYVV-LKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~----~l~~--~G~~V~-~~d~~~e~~~~~ 347 (733)
-||||||+|.+|+-++. .+.+ .+++|+ ++|+++++++..
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~ 62 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQT 62 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHH
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHH
Confidence 48999999998765544 3443 356776 789999887765
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.60 E-value=0.041 Score=51.82 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=30.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e 342 (733)
.||+|||+|.-|.+-|..|+++ |++|+++|..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 3899999999999999999775 789999998864
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.44 E-value=0.05 Score=52.37 Aligned_cols=33 Identities=33% Similarity=0.364 Sum_probs=30.6
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e 342 (733)
+|.|||+|.-|...|..|+++|+ +|++++++++
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 79999999999999999999995 8999999764
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=91.25 E-value=1.1 Score=43.46 Aligned_cols=159 Identities=10% Similarity=0.093 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-+|+++-.+...+.++.++.. ++-+|.|.-. ..|-.|-+-+. ....+...+++ .++.++.+|.|++|
T Consensus 97 G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pGf~~g~~~E~----------~g~~r~ga~~~-~a~~~~~VP~isvi 163 (299)
T d1pixa3 97 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAEK----------AELLGLGQSLI-YSIQTSHIPQFEIT 163 (299)
T ss_dssp TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHHH----------TTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred CccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CCcccchHHHh----------hhHHHHHHHHH-HHHHhhcceeEEEE
Confidence 568899999999999888765 4667777533 33666644321 12334455666 67899999999999
Q ss_pred CCcccchhhHHhh----hcCEEEEeCCceEeCccccCCCCCChhhhhhhc-cccCHH------------HHHHHHH-cCC
Q 004726 106 EGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP-RLVGLS------------KAIEMML-LSK 167 (733)
Q Consensus 106 ~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~-r~~G~~------------~a~~l~l-tG~ 167 (733)
=|.|+|||..... ..|++++ +..|..++|.+++-++...+- +.+... +-.++.- .-+
T Consensus 164 ~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~ 238 (299)
T d1pixa3 164 LRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYT 238 (299)
T ss_dssp CSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred ecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999998854333 2343331 123444455555444444332 211100 0011110 012
Q ss_pred CCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHc
Q 004726 168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (733)
Q Consensus 168 ~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~ 202 (733)
.-++-.+.+.|+||.|+++.+.........+.+..
T Consensus 239 ~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le~~~~ 273 (299)
T d1pixa3 239 KSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQ 273 (299)
T ss_dssp TTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHhCCcCeeECHHHHHHHHHHHHHHHHh
Confidence 35778889999999999998877666555554443
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.11 E-value=0.26 Score=44.11 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=27.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeE-EEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVV-LKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~-~~d~~~e~ 343 (733)
.||||.|.|.||+.+.+.+.... .+|+ +.|.++..
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~ 39 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF 39 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence 38999999999999999988754 5665 45666544
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.05 E-value=0.13 Score=49.48 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=37.0
Q ss_pred ceEEEE-cC-CcCcHHHHHHHHH---CCCeeEEEeCChHHHHHHHHHHH
Q 004726 309 RKVAVI-GG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIE 352 (733)
Q Consensus 309 ~kI~VI-G~-G~mG~~iA~~l~~---~G~~V~~~d~~~e~~~~~~~~i~ 352 (733)
.||+|| |+ +-+|.++|..|++ .|++|++.+|+++.++...+.+.
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~ 54 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG 54 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence 489998 55 6799999999986 69999999999999888766553
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=91.00 E-value=0.42 Score=45.12 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=34.2
Q ss_pred ceEEEE-cC-CcCcHHHHHHHHHCCCe-------eEEEeCChHHHHHHHH
Q 004726 309 RKVAVI-GG-GLMGSGIATAHILNNIY-------VVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VI-G~-G~mG~~iA~~l~~~G~~-------V~~~d~~~e~~~~~~~ 349 (733)
|+|.+| |+ +-||.++|..|++.|++ |++++++++.+++..+
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~ 50 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISL 50 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHH
Confidence 466655 66 67999999999999987 9999999998887644
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.99 E-value=0.1 Score=45.76 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=30.6
Q ss_pred eEEEE--cCCcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 310 kI~VI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
.|.|+ |.|.||..+|..|++.|.+|+++++.+.-+..
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~ 79 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM 79 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 44454 99999999999999999999999988654433
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=90.96 E-value=0.14 Score=48.74 Aligned_cols=42 Identities=19% Similarity=0.102 Sum_probs=32.5
Q ss_pred eEEEE--cCCcCcHHHHHHHHHCCCeeEEEe-CChHHHHHHHHHH
Q 004726 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VI--G~G~mG~~iA~~l~~~G~~V~~~d-~~~e~~~~~~~~i 351 (733)
+|++| |.+-||.++|..|++.|++|++.+ ++++.++...+.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~ 46 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI 46 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence 36666 458899999999999999999865 5677776655544
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=90.74 E-value=0.33 Score=46.35 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=30.9
Q ss_pred ceEEEEcC-Cc--CcHHHHHHHHHCCCeeEEEeCChHHHH
Q 004726 309 RKVAVIGG-GL--MGSGIATAHILNNIYVVLKEVNSEYLL 345 (733)
Q Consensus 309 ~kI~VIG~-G~--mG~~iA~~l~~~G~~V~~~d~~~e~~~ 345 (733)
|+|.|.|+ |. ||.++|+.|++.|.+|++.+++.+++.
T Consensus 7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~ 46 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI 46 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence 35666685 55 999999999999999999999987653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.69 E-value=1.2 Score=39.07 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=34.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+ |.+|...++.+...| .+|++.++++++++.++
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~ 70 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK 70 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence 47999995 999999998888888 49999999999887753
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=90.66 E-value=0.44 Score=44.99 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=31.9
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++-|.|+ +.+|.++|+.|++.|++|++.+++.+.+++.
T Consensus 7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 45 (241)
T d2a4ka1 7 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA 45 (241)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 3445566 6699999999999999999999999887654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=0.077 Score=50.72 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=32.7
Q ss_pred eEEEE--cCCcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 310 kI~VI--G~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
|+++| |.+.+|.+||+.|++.|++|++.|+++++++.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~ 45 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE 45 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 67777 56999999999999999999999999987665
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=90.44 E-value=0.18 Score=43.21 Aligned_cols=82 Identities=12% Similarity=0.004 Sum_probs=58.7
Q ss_pred ceEEEEcC----CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~----G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
++|+|||+ +..|..+...|.+.|++++.+..++... .........++.+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~---------------------------~i~g~~~~~~l~~ 66 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE---------------------------ELFGEEAVASLLD 66 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS---------------------------EETTEECBSSGGG
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc---------------------------eeeceecccchhh
Confidence 47999998 7889999999999999999999875320 0112344455555
Q ss_pred c-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 385 l-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+ ...|+|+.++| ++...+++++..+.- ..+++.
T Consensus 67 i~~~iD~v~v~~p--~~~v~~~v~~~~~~g-~k~i~~ 100 (136)
T d1iuka_ 67 LKEPVDILDVFRP--PSALMDHLPEVLALR-PGLVWL 100 (136)
T ss_dssp CCSCCSEEEECSC--HHHHTTTHHHHHHHC-CSCEEE
T ss_pred ccCCCceEEEecc--HHHHHHHHHHHHhhC-CCeEEE
Confidence 5 45799999998 777777888766553 344543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.44 E-value=0.19 Score=44.42 Aligned_cols=39 Identities=23% Similarity=0.170 Sum_probs=35.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+|.+|...++.+...|.+|++.+.++++++.+
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~ 67 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA 67 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence 479999999999999999999999999999999988765
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=90.37 E-value=0.42 Score=40.19 Aligned_cols=37 Identities=14% Similarity=-0.029 Sum_probs=31.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
+.|-|+|.|.+|..++..| .|++|+++|.+++..+..
T Consensus 1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~ 37 (129)
T d2fy8a1 1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKV 37 (129)
T ss_dssp CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHH
T ss_pred CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHH
Confidence 3588999999999999998 477899999999987654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.31 E-value=0.25 Score=44.01 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=33.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...++.+...|. .|++.|+++++++.++
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak 70 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 70 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence 369999999998888888888885 6888899999877653
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.21 E-value=0.17 Score=45.13 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=34.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...+..++..|. .|++.|+++++++.+.
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~ 70 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 70 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence 479999999999999999888876 7999999999988763
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=90.03 E-value=0.096 Score=50.66 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=32.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
+||.|+|+ |.+|+.++..|.+.|++|++++|+...
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 68999997 999999999999999999999997654
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.073 Score=52.85 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=29.4
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
|+|||+|.-|.+.|..|+++|++|+++|.+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 7899999999999999999999999999764
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=89.71 E-value=0.55 Score=44.93 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=29.1
Q ss_pred ceEEEEcC-C--cCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGG-G--LMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~-G--~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
|++-|.|+ | -||.++|+.|++.|++|++.+++++.
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~ 43 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL 43 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 34666676 5 49999999999999999999999653
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=89.67 E-value=0.15 Score=45.92 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=56.3
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHC-CCeeEEEeC-Ch-HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEV-NS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~-G~~V~~~d~-~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
|.||+|||+ |..|.-+.+.|.++ .+++..... +. ...-+ .+......+ .+... .......+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk---~~~~~~~~~--~~~~~--------~~~~~~~~~~ 67 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGK---LISDLHPQL--KGIVD--------LPLQPMSDVR 67 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTC---BHHHHCGGG--TTTCC--------CBEEEESCGG
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccc---ccccccccc--ccccc--------cccccchhhh
Confidence 569999997 99999999999997 567654432 11 11000 000000000 00000 001111122
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
....++|+|+.|+| .....++...+ ...++.++++++.....
T Consensus 68 ~~~~~~dvvf~alp--~~~s~~~~~~~---~~~~~~vIDlSadfRl~ 109 (179)
T d2g17a1 68 DFSADVDVVFLATA--HEVSHDLAPQF---LQAGCVVFDLSGAFRVN 109 (179)
T ss_dssp GTCTTCCEEEECSC--HHHHHHHHHHH---HHTTCEEEECSSTTSSS
T ss_pred hhhcccceeecccc--chhHHHHhhhh---hhcCceeeccccccccc
Confidence 34578999999999 44444544443 34677777877765443
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.64 E-value=0.1 Score=51.52 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=54.5
Q ss_pred CCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCC--C----
Q 004726 97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--T---- 170 (733)
Q Consensus 97 ~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i--~---- 170 (733)
-..|+|++|.|.|+|+|..++..||++|+.+++.+.+. |+. +.+. .+|+.+ |
T Consensus 239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt--------------------Gp~-~l~~-~lG~eVy~s~~eL 296 (333)
T d1uyra1 239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT--------------------GAP-AINK-MLGREVYTSNLQL 296 (333)
T ss_dssp HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS--------------------CHH-HHHH-HSSSCCCSCTHHH
T ss_pred CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee--------------------CHH-HHHH-hcCccccCChhHh
Confidence 56999999999999999999999999999988765532 211 1121 234444 3
Q ss_pred --HHHHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 171 --SEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 171 --a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
++-..+-|++|.+++.| .++.+.+.++.
T Consensus 297 GG~~i~~~nGv~h~~a~dd---~eai~~i~~~L 326 (333)
T d1uyra1 297 GGTQIMYNNGVSHLTAVDD---LAGVEKIVEWM 326 (333)
T ss_dssp HSHHHHHHHTSSSEEESSH---HHHHHHHHHHH
T ss_pred CCHhHHhhCCCceEEeCCH---HHHHHHHHHHH
Confidence 33335689999999754 33444444443
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.61 E-value=0.61 Score=44.70 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=30.4
Q ss_pred eEEEE-c-CCcCcHHHHHHHHHCCCeeEEEeCCh-HHHHHH
Q 004726 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNS-EYLLKG 347 (733)
Q Consensus 310 kI~VI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~-e~~~~~ 347 (733)
|+++| | .+-+|.+||..|++.|++|++.+++. +.++..
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~ 59 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV 59 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence 66666 5 58999999999999999999999874 444443
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.60 E-value=0.34 Score=42.07 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=29.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV 339 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~ 339 (733)
++|.|||+|.+|..-|..|+++|.+|+++..
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 5899999999999999999999999999954
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.30 E-value=0.054 Score=51.57 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=29.9
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~ 345 (733)
|+++| |+ +-||.++|..|++.|++|++.+++++..+
T Consensus 8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~ 45 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK 45 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence 45555 55 67999999999999999999999876544
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.20 E-value=0.063 Score=50.46 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=30.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-------eeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-------YVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-------~V~~~d~~~e 342 (733)
.||+|||+|.-|.+-|..|+++|| +|++||.++.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 389999999999999999999984 7999999764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.10 E-value=0.097 Score=46.53 Aligned_cols=33 Identities=42% Similarity=0.483 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~ 341 (733)
+||.|||+|..|..+|..|.+.|. +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 589999999999999999999875 789999876
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.99 E-value=0.14 Score=49.88 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=31.0
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
+||.|+|+ |.+|+.++..|++.|++|++.+|++.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 57999996 99999999999999999999998754
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=88.97 E-value=0.1 Score=49.33 Aligned_cols=32 Identities=31% Similarity=0.355 Sum_probs=30.2
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus 5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 89999999999999999999999999998764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=88.85 E-value=0.65 Score=44.12 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=61.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c--cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S--EF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~--~l 385 (733)
++|.=+|+|. | .++..+++.|.+|+.+|+|++.++.+.+.++. .+ ++ .++. ..+. + .-
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~-------n~-~~--------~~~~-~~d~~~~~~~ 182 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKR-------NG-VR--------PRFL-EGSLEAALPF 182 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH-------TT-CC--------CEEE-ESCHHHHGGG
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHH-------cC-Cc--------eeEE-eccccccccc
Confidence 3688899998 4 35566788899999999999999988654321 12 11 0111 1111 1 12
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
...|+|+-.+. ......+++++.+.++|+-.++
T Consensus 183 ~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li 215 (254)
T d2nxca1 183 GPFDLLVANLY--AELHAALAPRYREALVPGGRAL 215 (254)
T ss_dssp CCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence 46899987765 6667788888888888876554
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=88.54 E-value=1.1 Score=42.45 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=30.3
Q ss_pred eEEEEcC-C--cCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 310 KVAVIGG-G--LMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 310 kI~VIG~-G--~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++-|.|+ | -+|.++|+.|++.|++|++.+++++..+.+
T Consensus 10 ~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~ 50 (256)
T d1ulua_ 10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEA 50 (256)
T ss_dssp EEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHH
Confidence 4556676 4 499999999999999999999987655443
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=88.40 E-value=0.66 Score=43.85 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=29.4
Q ss_pred eEEEEcC-C--cCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 310 KVAVIGG-G--LMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 310 kI~VIG~-G--~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
+|-|.|+ | -+|.++|..|++.|++|++.+++++..+.+
T Consensus 7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4555565 4 367999999999999999999997655443
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.28 E-value=0.068 Score=44.69 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=29.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHH---CCCeeEEEeCChHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSEYL 344 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~---~G~~V~~~d~~~e~~ 344 (733)
++|+|||+|.+|.-+|..+.+ .|.+|+++++.+.-+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL 59 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL 59 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence 589999999999999976654 456899999876543
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.18 E-value=0.36 Score=47.30 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=28.3
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
|+++| |+ +-||.++|..|++.|++|++.|++.+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 67777 54 77999999999999999999988654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=88.08 E-value=0.18 Score=45.23 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=35.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~ 69 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 69 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence 479999999999999999998886 7999999999988764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=88.07 E-value=0.22 Score=46.88 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=31.6
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
++-|.|+ +-||.++|..|++.|++|++.|++++.+++
T Consensus 6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR 43 (234)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence 4556666 779999999999999999999999887654
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=88.02 E-value=0.071 Score=44.51 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=29.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHH---CCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~---~G~~V~~~d~~~e~ 343 (733)
++|+|||+|..|.-+|..+.+ .|.+|+++++.+.-
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i 56 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence 589999999999999987654 48899999987643
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=87.98 E-value=0.13 Score=49.08 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.||.|||+|.+|+.+|..|++.|. +++++|.|.
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 379999999999999999999998 899999653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=87.90 E-value=0.18 Score=45.44 Aligned_cols=40 Identities=15% Similarity=-0.071 Sum_probs=34.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
.+|-.||+|. | ..+..|++.|++|+++|++++.++.+.++
T Consensus 22 ~rvLd~GCG~-G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~ 61 (201)
T d1pjza_ 22 ARVLVPLCGK-S-QDMSWLSGQGYHVVGAELSEAAVERYFTE 61 (201)
T ss_dssp CEEEETTTCC-S-HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred CEEEEecCcC-C-HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence 4799999999 4 47778899999999999999999988654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=87.79 E-value=0.11 Score=51.82 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=30.1
Q ss_pred ceEEEEcCCcCcHHHHHHHH-----HCCCeeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHI-----LNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~-----~~G~~V~~~d~~~e 342 (733)
--|.|||+|..|..+|..|+ ++|++|+++|+++.
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 35999999999999999996 57999999998753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=87.75 E-value=1.2 Score=39.26 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=33.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...++.+...| ..|++.|+++++++.++
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~ 74 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE 74 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence 36999999999999888887767 47888999999877653
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=87.69 E-value=0.16 Score=50.00 Aligned_cols=34 Identities=21% Similarity=0.110 Sum_probs=31.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
-.|+|||+|.-|..+|..|.+.|++|+++|.+++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 3699999999999999999999999999998764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=87.59 E-value=0.13 Score=51.56 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=32.7
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (733)
++|.|+|+ |.+|+.++..|++.||+|++..|++++.
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 57999986 9999999999999999999999987654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.58 E-value=0.81 Score=43.44 Aligned_cols=40 Identities=28% Similarity=0.243 Sum_probs=30.9
Q ss_pred eEEEE--cCCcCcHHHHHHHHHCCCeeEEE-eCChHHHHHHHH
Q 004726 310 KVAVI--GGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VI--G~G~mG~~iA~~l~~~G~~V~~~-d~~~e~~~~~~~ 349 (733)
|+++| |.+-+|.++|..|++.|++|++. +++++.+++..+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~ 49 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVA 49 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHH
Confidence 56666 45779999999999999999985 566666666544
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=87.13 E-value=0.15 Score=48.51 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=27.7
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
||.|| |+ +-||.++|+.|++.|++|++.|++++
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 45544 65 77999999999999999999999764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.77 E-value=0.2 Score=50.26 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=30.7
Q ss_pred CCCcceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 305 PRGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 305 ~~~~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
.+.| ||.|.|+ |.+|+.++..|.+.|++|+++|+..
T Consensus 13 ~~nM-KILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 13 SENL-KISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp TSCC-EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCC-EEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 3344 6999976 9999999999999999999998753
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=86.76 E-value=0.13 Score=46.36 Aligned_cols=98 Identities=11% Similarity=0.142 Sum_probs=55.5
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
|.||+|||+ |..|.-+.+.|.++- +++..+-.+...-+. +......+... ..+. ..+. +.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~----i~~~~p~~~~~------------~~~~-~~~~~~~ 63 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKK----LEEIFPSTLEN------------SILS-EFDPEKV 63 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSB----HHHHCGGGCCC------------CBCB-CCCHHHH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCc----ccccCchhhcc------------cccc-ccCHhHh
Confidence 468999998 999999999998864 466655333221111 11100000000 0111 1122 23
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
.+++|+|+.|+|..... ++. ... .++.|+++++...+.
T Consensus 64 ~~~~dvvf~a~p~~~s~--~~~----~~~-~~~~VIDlSadfRl~ 101 (176)
T d1vkna1 64 SKNCDVLFTALPAGASY--DLV----REL-KGVKIIDLGADFRFD 101 (176)
T ss_dssp HHHCSEEEECCSTTHHH--HHH----TTC-CSCEEEESSSTTTCS
T ss_pred ccccceEEEccccHHHH--HHH----Hhh-ccceEEecCcccccc
Confidence 46799999999965543 222 222 567788888876654
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.32 E-value=0.43 Score=45.33 Aligned_cols=34 Identities=35% Similarity=0.353 Sum_probs=29.1
Q ss_pred EEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHH
Q 004726 311 VAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (733)
Q Consensus 311 I~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (733)
|+|| |+ +-+|.++|..|+++|++|++.+++.+..
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 5666 44 6799999999999999999999987654
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=86.28 E-value=0.19 Score=48.00 Aligned_cols=36 Identities=14% Similarity=-0.109 Sum_probs=30.5
Q ss_pred EEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 312 AVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 312 ~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
-|-|+ +-+|.++|..|++.|++|++.|++.+.++..
T Consensus 4 lVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~ 40 (252)
T d1zmta1 4 IVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL 40 (252)
T ss_dssp EESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 34465 6699999999999999999999998877654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=86.15 E-value=0.41 Score=43.60 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=33.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~ 348 (733)
.+|.|+|+|.+|...++.+...|. .|++.|.++++++.+.
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~ 67 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK 67 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence 379999999999888887777776 7999999999988764
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=85.86 E-value=0.49 Score=42.63 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=24.7
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCC-CeeEEEeC
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNN-IYVVLKEV 339 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G-~~V~~~d~ 339 (733)
-||+|||+ |..|.-+.+.|.++- +++..+..
T Consensus 6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S 38 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTA 38 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCceEEEEec
Confidence 37999998 999999999998863 46665543
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.59 E-value=0.19 Score=45.68 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=30.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (733)
-++|.|||+|.-|.+-|..+++.|.+|+++|..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~ 37 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW 37 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence 468999999999999999999999999999854
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=85.17 E-value=0.21 Score=47.47 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=32.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
..|.|||+|.-|...|..++++|++|+++|.++..
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 35999999999999999999999999999998754
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.12 E-value=0.61 Score=41.37 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=28.5
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~ 340 (733)
++|.|||-+ ..|.++|..|++.|..|+..+.+
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~ 62 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN 62 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence 589999976 55999999999999999999875
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.07 E-value=0.76 Score=46.75 Aligned_cols=109 Identities=12% Similarity=0.051 Sum_probs=60.7
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC-c--ccc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-Y--SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~--~~l 385 (733)
+|.=||+|. |.......+..|. +|+++|.++..++.+.+..+..-......+.-... . .......+... . +.+
T Consensus 219 ~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~-~-~~~~~~~f~~~~~~d~~~ 295 (406)
T d1u2za_ 219 TFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN-V-EFSLKKSFVDNNRVAELI 295 (406)
T ss_dssp EEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC-E-EEEESSCSTTCHHHHHHG
T ss_pred EEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc-c-eeeeeechhhcccccccc
Confidence 577789998 5554444455565 79999999999998876654432222111100000 0 00000000111 1 346
Q ss_pred CCCCEEEEec-cCChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 386 KDVDMVIEAV-IESVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 386 ~~aDlVI~av-pe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
..||+|+..- .-..++ ...+.++...+++|+.|++.
T Consensus 296 ~~adVV~inn~~f~~~l-~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 296 PQCDVILVNNFLFDEDL-NKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp GGCSEEEECCTTCCHHH-HHHHHHHHTTCCTTCEEEES
T ss_pred ccceEEEEecccCchHH-HHHHHHHHHhcCCCcEEEEe
Confidence 7889888642 223443 45567888899999977653
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.86 E-value=0.22 Score=43.80 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=27.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
.||.|||+|..|.-+|..|++ +.+|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 389999999999999998864 78999998753
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=84.80 E-value=0.18 Score=47.34 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=29.2
Q ss_pred eEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 310 kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
|+++| |+ +-||.++|..|++.|++|++.|++++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 45666 54 889999999999999999999998764
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=84.78 E-value=0.19 Score=48.20 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=29.7
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
||.|.|+ |.+|+.++..|.+.|++|+..|+++
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 6999997 9999999999999999999999864
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=84.78 E-value=0.22 Score=44.42 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=33.7
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|....+.+...|.+|+..+.++++.+.+
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~ 68 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP 68 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccc
Confidence 46899896 9999998888888999999999999887765
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=84.68 E-value=0.21 Score=44.50 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=30.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
++|.|||+|..|.-+|..|.+.|.+|+++.+.++
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~ 37 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA 37 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence 5799999999999999999999999888776653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.26 E-value=0.35 Score=45.14 Aligned_cols=39 Identities=13% Similarity=-0.170 Sum_probs=34.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
.+|-.+|+|. +..+..|++.|++|+++|.+++.++.+.+
T Consensus 47 ~rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~~ 85 (229)
T d2bzga1 47 LRVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFFT 85 (229)
T ss_dssp CEEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 3799999999 46688899999999999999999887754
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=84.26 E-value=0.29 Score=48.73 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=32.4
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (733)
+||-|.|+ |.+|+.++..|++.|++|+++|++....
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~ 45 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV 45 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 68999986 9999999999999999999999987543
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.24 E-value=2.5 Score=42.15 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe-
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV- 105 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav- 105 (733)
.+.++-...-.+++..+.+.-++-+|+|.-. +.|+.|-+-. .....+.+..++ .++.++..|+|..|
T Consensus 109 v~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~-pGF~~G~~~E----------~~gilr~GA~iv-~A~~~~~vP~i~vI~ 176 (404)
T d1uyra2 109 VWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRDM----------FNEVLKYGSFIV-DALVDYKQPIIIYIP 176 (404)
T ss_dssp CBCHHHHHHHHHHHHHHHTTSCCCEEECCCC-CCBCC----------------CTHHHHHHHHH-HHHHTCCSCEEEEEC
T ss_pred ccCchHHHHHHHHHHHhhhccccceEEeecC-CcccCcHHHH----------HHHHHHHHHHHH-HHHHhcCCCEEEEEe
Confidence 5677788888888877765556777777543 5588776532 223445565667 67999999999999
Q ss_pred -CCcccchhhHHhh---h-cCE-EEEeCCceEeCccccCCCCCChhhhhhh
Q 004726 106 -EGLALGGGLELAM---G-CHA-RIAAPKTQLGLPELTLGVIPGFGGTQRL 150 (733)
Q Consensus 106 -~G~a~GgG~~lal---a-cD~-ria~~~a~f~~pe~~~Gl~P~~g~~~~l 150 (733)
.|.+.||...+.- . .++ ++|-++++ .|.++.-|+....
T Consensus 177 ~~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~-------~gVm~pEGav~I~ 220 (404)
T d1uyra2 177 PTGELRGGSWVVVDPTINADQMEMYADVNAR-------AGVLEPQGMVGIK 220 (404)
T ss_dssp TTCEEEHHHHHTTCGGGGTTTEEEEEETTCE-------EESSCHHHHHHHH
T ss_pred CCcccchhhhhcccCccCCccceEEECCccc-------cccCChhhhhhhe
Confidence 5666665443331 1 222 34445554 5566656655444
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=84.16 E-value=1 Score=42.55 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=28.6
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
.|-|.|+ +-+|.++|..|++.|.+|++.+++.+..+.
T Consensus 7 ~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~ 44 (254)
T d1sbya1 7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTA 44 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHH
Confidence 3445565 679999999999999999888776665443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.12 E-value=0.44 Score=41.61 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=55.0
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC---eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccc-cccCccc
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYSE 384 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~ 384 (733)
||||||+ |..|.-+.+.|.++.+ ++..+..+... .+ .+... ..... .......
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~-G~-----------~~~~~----------~~~~~~~~~~~~~ 60 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA-GK-----------SLKFK----------DQDITIEETTETA 60 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGT-TC-----------EEEET----------TEEEEEEECCTTT
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccc-cc-----------ccccc----------CCcccccccchhh
Confidence 7999999 9999999999988865 34444332211 00 00000 00011 1112255
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
..++|+++.+.| .....+...+ ....++.|+++++.....
T Consensus 61 ~~~~d~~f~~~~--~~~s~~~~~~---~~~~~~~VIDlSsdfR~~ 100 (154)
T d2gz1a1 61 FEGVDIALFSAG--SSTSAKYAPY---AVKAGVVVVDNTSYFRQN 100 (154)
T ss_dssp TTTCSEEEECSC--HHHHHHHHHH---HHHTTCEEEECSSTTTTC
T ss_pred hhhhhhhhhccC--ccchhhHHhh---hccccceehhcChhhhcc
Confidence 788999999998 4433343333 334688888988876543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=83.59 E-value=2.3 Score=39.43 Aligned_cols=92 Identities=18% Similarity=0.113 Sum_probs=59.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccC---ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD---YSE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~---~~~ 384 (733)
++|-=||+|+ | .++..|++.|.+|+++|.+++.++.+.+... +.+. ++.+ ..+ ++.
T Consensus 43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~-------~~~~-----------~i~~~~~d~~~l~~ 102 (251)
T d1wzna1 43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAK-------ERNL-----------KIEFLQGDVLEIAF 102 (251)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HTTC-----------CCEEEESCGGGCCC
T ss_pred CEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccc-------cccc-----------cchheehhhhhccc
Confidence 4799999998 4 4566788999999999999999888765432 1110 1111 111 111
Q ss_pred cCCCCEEEEec----cCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 385 FKDVDMVIEAV----IESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 385 l~~aDlVI~av----pe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
-...|+|+..- .-+..-.+.+++++.+.++|+-+++
T Consensus 103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li 142 (251)
T d1wzna1 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142 (251)
T ss_dssp CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence 13568877542 1123445678899999999887554
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=83.29 E-value=0.27 Score=44.32 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=30.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
-++|.|||.|..|.+-|..+++.|.+|+++++..
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 4689999999999999999999999999998653
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=83.05 E-value=0.86 Score=42.90 Aligned_cols=30 Identities=23% Similarity=0.104 Sum_probs=27.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEe
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKE 338 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d 338 (733)
++|+|-|.|.+|...|+.|.+.|..|+.++
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs 61 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS 61 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence 479999999999999999999999988655
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.93 E-value=0.37 Score=47.24 Aligned_cols=31 Identities=19% Similarity=0.524 Sum_probs=28.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeC
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV 339 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~ 339 (733)
+||.|.|+ |.+|+.++..|++.|++|+++|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 58999987 99999999999999999999986
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=82.86 E-value=0.29 Score=46.00 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=30.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
.||-|.|+ +-||.++|+.|++.|++|++.|++++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 47878877 89999999999999999999999865
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=82.61 E-value=2 Score=38.48 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=57.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccCc---ccc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY---SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~---~~l 385 (733)
+|-=||+|. | ..+..|++.|++|+++|.+++.++.+.+... ..+ + ..+.+ ..+. ..-
T Consensus 33 rvLDiGcG~-G-~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~-------~~~-~---------~~~~~~~~d~~~~~~~ 93 (198)
T d2i6ga1 33 RTLDLGCGN-G-RNSLYLAANGYDVTAWDKNPASMANLERIKA-------AEG-L---------DNLQTDLVDLNTLTFD 93 (198)
T ss_dssp EEEEETCTT-S-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HTT-C---------TTEEEEECCTTTCCCC
T ss_pred cEEEECCCC-C-HHHHHHHHHhhhhccccCcHHHHHHHHHHhh-------hcc-c---------cchhhhheeccccccc
Confidence 689999994 4 4677889999999999999999988755332 111 1 11221 1121 111
Q ss_pred CCCCEEEEecc-C--ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 386 KDVDMVIEAVI-E--SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 386 ~~aDlVI~avp-e--~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
..-|+|+.... + +..-...+++++...++++-+++
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 131 (198)
T d2i6ga1 94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNL 131 (198)
T ss_dssp CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 33588775331 1 13445678889988888876544
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=82.53 E-value=0.33 Score=44.02 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=28.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~ 341 (733)
+||.|||+|..|..+|..|.+. +.+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 3799999999999999999886 45899998764
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.41 E-value=0.38 Score=47.74 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=28.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeC
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV 339 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~ 339 (733)
+||.|.|+ |.+|+.++..|++.|++|+++|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 58999977 99999999999999999999984
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=82.31 E-value=0.4 Score=47.51 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=28.2
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeC
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEV 339 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~ 339 (733)
||.|+|+ |.+|+.++..|++.|++|+++|+
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 6999977 99999999999999999999986
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.15 E-value=1.4 Score=37.13 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=56.4
Q ss_pred ceEEEEcCC----------cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHh--hcc
Q 004726 309 RKVAVIGGG----------LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KML 376 (733)
Q Consensus 309 ~kI~VIG~G----------~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~--~~i 376 (733)
+||+|+|+- .-.-.++..|.+.|.+|.+||..-+..+.. + ...+...... ...
T Consensus 14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~--------------~-~~~~~~~~~~~~~~~ 78 (136)
T d1mv8a3 14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVH--------------G-ANKEYIESKIPHVSS 78 (136)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTS--------------S-SCHHHHHHTSHHHHT
T ss_pred CEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHh--------------h-hhhhhhhhccccccc
Confidence 589999974 345678899999999999999743321100 0 0000000000 012
Q ss_pred ccccCc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 377 ~~~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
...+++ ++++++|+||.+++-+ + |.++...+.++.+|.+....+
T Consensus 79 ~~~~~~~e~i~~~D~ivi~t~h~-~-----f~~l~~~~~~~~~I~D~~~~~ 123 (136)
T d1mv8a3 79 LLVSDLDEVVASSDVLVLGNGDE-L-----FVDLVNKTPSGKKLVDLVGFM 123 (136)
T ss_dssp TBCSCHHHHHHHCSEEEECSCCG-G-----GHHHHHSCCTTCEEEESSSCC
T ss_pred eeehhhhhhhhhceEEEEEeCCH-H-----HHHHHHHhcCCCEEEECCCCC
Confidence 233444 6789999999999732 2 334455566677777654433
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=82.00 E-value=0.37 Score=44.27 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=28.8
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCC
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (733)
|.|||+|.-|.+.|..+++.|.+|++++.+
T Consensus 5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 5 YIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 799999999999999999999999999986
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=81.76 E-value=0.37 Score=46.93 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=29.9
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
-|.|||+|.-|.+.|..+++.|.+|+++|..+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 48999999999999999999999999999764
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=81.68 E-value=0.65 Score=38.42 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=31.2
Q ss_pred CcceEEEEcCCc-----------CcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 307 GVRKVAVIGGGL-----------MGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 307 ~~~kI~VIG~G~-----------mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
..+||.|||+|. .+...++.|.+.|+++++++.||+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT 50 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET 50 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 357999999985 4566678899999999999999975
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.58 E-value=0.47 Score=48.84 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 389999999999999999999998 899999864
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=81.53 E-value=0.37 Score=46.36 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=29.8
Q ss_pred eEEEEcCCcCcHHHHHHHHH-CCCeeEEEeCChH
Q 004726 310 KVAVIGGGLMGSGIATAHIL-NNIYVVLKEVNSE 342 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~-~G~~V~~~d~~~e 342 (733)
-|.|||+|.-|...|..|++ .|++|+++|..+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 49999999999999999987 5999999998763
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=81.25 E-value=0.28 Score=48.89 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=28.1
Q ss_pred CcceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeC
Q 004726 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEV 339 (733)
Q Consensus 307 ~~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~ 339 (733)
+|+||-|.|+ |.+|+.++..|.+.|++|.++.+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 3789999985 99999999999999998666554
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.57 E-value=0.47 Score=47.98 Aligned_cols=30 Identities=33% Similarity=0.419 Sum_probs=28.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEe
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKE 338 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d 338 (733)
+||.|.|+ |.+|+.++..|++.||+|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 47999987 9999999999999999999998
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=80.47 E-value=0.99 Score=43.13 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=30.0
Q ss_pred EEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCC-hHHHHHHHH
Q 004726 311 VAVI-GG-GLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIK 349 (733)
Q Consensus 311 I~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~-~e~~~~~~~ 349 (733)
|+|| |+ +-||.++|..|++.|++|++.+++ ++.++...+
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~ 45 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSA 45 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHH
Confidence 7888 44 789999999999999999987664 555544433
|