Citrus Sinensis ID: 004735
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 732 | 2.2.26 [Sep-21-2011] | |||||||
| P34422 | 740 | Dipeptidyl peptidase fami | no | no | 0.334 | 0.331 | 0.290 | 3e-21 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.312 | 0.348 | 0.273 | 6e-17 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.296 | 0.296 | 0.293 | 4e-16 | |
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.293 | 0.293 | 0.299 | 4e-16 | |
| P80227 | 730 | Acylamino-acid-releasing | yes | no | 0.312 | 0.313 | 0.286 | 3e-15 | |
| P13798 | 732 | Acylamino-acid-releasing | yes | no | 0.284 | 0.284 | 0.278 | 5e-15 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.292 | 0.292 | 0.297 | 8e-15 | |
| Q9YBQ2 | 582 | Acylamino-acid-releasing | no | no | 0.247 | 0.310 | 0.313 | 3e-12 | |
| Q95WU5 | 761 | Dipeptidyl-peptidase 4 OS | N/A | no | 0.316 | 0.304 | 0.221 | 6e-10 | |
| Q0C8V9 | 723 | Probable dipeptidyl-pepti | N/A | no | 0.319 | 0.323 | 0.232 | 2e-08 |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 126/272 (46%), Gaps = 27/272 (9%)
Query: 450 DTLKYKSYFSLPELIEF--PTEVP-GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT 506
D + ++Y SLP ++VP G + YA + + A P++ ++V HGGP
Sbjct: 389 DEMTIQAYLSLPPQAPLLKSSQVPDGDRPYA-----NLGMIPAVPQK---MIVLVHGGPK 440
Query: 507 SEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV 566
+ + + T+RG++ + VN+ GSTG+G+ G WG D F V
Sbjct: 441 ARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILDAVEFAV 500
Query: 567 GSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSML-----------R 614
G A+ + + GGS GGY TL AL F TF G + G ++L L R
Sbjct: 501 SKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPPYWLGFR 560
Query: 615 AETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 674
+ K I + G + +SP+ F D+ + PI++ QG D V ++ + AL
Sbjct: 561 KDLIKMVGADISDEEG-RQSLQSRSPLFFADRVTKPIMIIQGANDPRVKQAESDQFVAAL 619
Query: 675 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQ 706
++ +PV + Y E HG RK +N ++EQ
Sbjct: 620 EKKHIPVTYLLYPDEGHGVRKPQN---SMEQH 648
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3EC: .EC: 4EC: .EC: 1EC: 4EC: .EC: - |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 20/249 (8%)
Query: 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSI 517
S+PE I++ TE G + P+ Q E PL++ HGGP
Sbjct: 398 ISIPEEIQYATE-DGVMVNGWLMRPA----QMEGETTYPLILNIHGGPHMMYGHTYFHEF 452
Query: 518 QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRL 576
Q ++G+A V +N GS GYG+EF + G +G D +D + D KRL
Sbjct: 453 QVLAAKGYAVVYINPRGSHGYGQEFVNAVRGDYGGKDYDDVMQAVDEAIKRDPHIDPKRL 512
Query: 577 CITGGSAGGYTTLAALAFRDTFKAGA---------SLYGVADLSMLRAETHKFESRYIDN 627
+TGGS GG+ T + + FKA S +GV+D+ + + D
Sbjct: 513 GVTGGSYGGFMTNWIVGQTNRFKAAVTQRSISNWISFHGVSDIGYFFTDWQLEHDMFED- 571
Query: 628 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687
+EK +++SP+ + P+++ G D P +QA +++ ALK+ G LV +
Sbjct: 572 ---TEK-LWDRSPLKYAANVETPLLILHGERDDRCPIEQAEQLFIALKKMGKETKLVRFP 627
Query: 688 GEQHGFRKA 696
H +
Sbjct: 628 NASHNLSRT 636
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536
A PSNP + + P++V HGGP S L G+A + VNY GST
Sbjct: 486 AILLQPSNP----PDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGST 541
Query: 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT--------- 587
G+G++ L G G DV D ++ D +R+ + GGS GG+
Sbjct: 542 GFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYP 601
Query: 588 -TLAALAFRDTFKAGASLYGVADL-SMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 645
T +A R+ AS+ G D+ ET S + ++ +KSPI ++
Sbjct: 602 ETYSACIARNPVINIASMMGSTDIPDWCMVETGFPYSNSCLPDLNVWEEMLDKSPIKYIP 661
Query: 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
+ P++L G ED+ VP Q + Y+ALK +PV L+ Y H + E
Sbjct: 662 QVKTPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSNHALSEVE 713
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 477 AYYYPPSNPIYQASPEE-KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535
A PSN SP++ + P++V HGGP S L G+A + VNY GS
Sbjct: 486 AILLQPSN-----SPDKSQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGS 540
Query: 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT-------- 587
TG+G++ L G G DV D ++ D +R+ + GGS GG+
Sbjct: 541 TGFGQDSILSLPGNVGHQDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQY 600
Query: 588 --TLAALAFRDTFKAGASLYGVADL-SMLRAET-HKFESRYIDNLVGSEKDYYEKSPINF 643
T +A R+ S+ G D+ ET + + Y+ +L E + +KSPI +
Sbjct: 601 PETYSACIARNPVINIVSMMGTTDIPDWCMVETGFPYSNDYLPDLNVLE-EMLDKSPIKY 659
Query: 644 VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
+ + P++L G ED+ VP Q + Y ALK +PV L+ Y H + E
Sbjct: 660 IPQVKTPVLLMLGQEDRRVPFKQGLEYYHALKARNVPVRLLLYPKSTHALSEVE 713
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P80227|ACPH_BOVIN Acylamino-acid-releasing enzyme OS=Bos taurus GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 482 PSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541
PSNP + + P++V HGGP S L G+A + VNY GSTG+G++
Sbjct: 489 PSNP----PDKTQVPMVVMPHGGPHSSFVTSWMLLPAMLCKMGFAALLVNYRGSTGFGQD 544
Query: 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT----------TLAA 591
L G G DV D ++ D R+ + GGS GG+ T A
Sbjct: 545 SILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALLGGSHGGFLSCHLIGQYPETYGA 604
Query: 592 LAFRDTFKAGASLYG---VADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 648
R+ AS+ G + D ++ A D V SE KSPI + +
Sbjct: 605 CVVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPDPNVWSE--MLNKSPIKYTPQVK 662
Query: 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 708
P++L G ED+ VP Q + Y+ALK +PV L+ Y H + E + ++
Sbjct: 663 TPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSTHSLSEVEVESDSFMNAVI 722
Query: 709 FFARVVGH 716
+ +GH
Sbjct: 723 WMCTHLGH 730
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 15/223 (6%)
Query: 489 ASPEEKP--PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL 546
SP +K P++V HGGP S L G+A + VNY GSTG+G++ L
Sbjct: 492 GSPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSL 551
Query: 547 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY 605
G G DV D ++ D + + GGS GG+ + + + +T++A +
Sbjct: 552 PGNVGHQDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRACVARN 611
Query: 606 GVADLSMLRAET-----------HKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILF 654
V +++ + T F S + +L + +KSPI ++ + P++L
Sbjct: 612 PVINIASMLGSTDIPDWCVVEAGFPFSSDCLPDL-SVWAEMLDKSPIRYIPQVKTPLLLM 670
Query: 655 QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
G ED+ VP Q + Y+ALK +PV L+ Y H + E
Sbjct: 671 LGQEDRRVPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVE 713
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 103/235 (43%), Gaps = 21/235 (8%)
Query: 477 AYYYPPSNPIYQASPEE-KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535
A PSN SPE+ + P++V HGGP S L G+A + VNY GS
Sbjct: 486 AILLQPSN-----SPEKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGS 540
Query: 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT-------- 587
TG+G++ L G G DV D ++ D R+ + GGS GG+
Sbjct: 541 TGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQY 600
Query: 588 --TLAALAFRDTFKAGASLYG---VADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPIN 642
T +A R+ AS+ G + D M+ A + S + +L +KSPI
Sbjct: 601 PETYSACVVRNPVINIASMMGSTDIPDWCMVEA-GFSYSSDCLPDL-SVWAAMLDKSPIK 658
Query: 643 FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
+ + P++L G ED+ VP Q + Y+ LK +PV L+ Y H + E
Sbjct: 659 YAPQVKTPLLLMLGQEDRRVPFKQGMEYYRVLKARNVPVRLLLYPKSTHALSEVE 713
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q9YBQ2|APEH_AERPE Acylamino-acid-releasing enzyme OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1547.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
D + A + SG A E L I G S GGY TL AL + FKAG + V D +
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMY 478
Query: 615 AETHKFESRYIDNLVGSEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673
+ +I+ L G ++ +SPIN VD+ P+ L D P ++
Sbjct: 479 ELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGE 538
Query: 674 LKENG 678
L G
Sbjct: 539 LLARG 543
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q95WU5|DPP_GIAIN Dipeptidyl-peptidase 4 OS=Giardia intestinalis GN=DPP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 25/257 (9%)
Query: 452 LKYKSYFSLPELIEFPTE-VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR 510
L++ PE P++ P Q +++Y+ P+N + PL++ HGGP S
Sbjct: 490 LRHIDELQEPEEFYLPSKSFPDQYVHSWYFAPAN----LRDSHEYPLILYVHGGPESPWA 545
Query: 511 GILNL--SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW---GIVDVNDCCSCATFL 565
+ + Q +RG+ + N+ GS+ +G F++ + G W + D+ D S
Sbjct: 546 NSWSYRWNPQLIAARGYGVLATNFHGSSSFGEVFQKSVRGNWYSYPLEDIMDAWSNIYTH 605
Query: 566 VGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY----GVADLSMLRAETHK-- 619
+++C G S G + + ++ + Y GV D ET +
Sbjct: 606 ADKAYLSREKVCAMGASFGA----TFMNYMNSHVNNVTCYVTHDGVFDTMCNALETDELF 661
Query: 620 FESR-----YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 674
F R +D V +++ Y + +P FV+ S P+++ G +D + +++AL
Sbjct: 662 FPVRELGGFLLDEQVDNQQLYEKWNPARFVENMSAPMLVIHGQKDYRIQVYHGISLFQAL 721
Query: 675 KENGLPVALVEYEGEQH 691
+ G+ LV + + H
Sbjct: 722 RLRGIKTKLVYFPTQSH 738
|
May be involved in metabolism of dipeptides or may affect host defense mechanisms. Giardia intestinalis (taxid: 5741) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q0C8V9|DPP5_ASPTN Probable dipeptidyl-peptidase 5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dpp5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 99/250 (39%), Gaps = 16/250 (6%)
Query: 493 EKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550
+K PL HGGP S + + + + +G+ V N GSTG+G+E + + W
Sbjct: 469 KKYPLFFYIHGGPQSATPDSWSTRWNAKVFADQGYVVVAPNPTGSTGFGQELTDAIANNW 528
Query: 551 GIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTT--LAALAFRDTFKAGASLYG- 606
G D ++ + D + G S GG+ + FKA G
Sbjct: 529 GGAPYEDLVKAWEYVDKNLPYVDTENGVAAGASYGGFMINWIQGSDLGRKFKALVCHDGT 588
Query: 607 -VADLSMLRAETHKFESRYIDNLVGSEKDY--YEKSPINFVDKFSCPIILFQGLEDKVVP 663
VAD + E E + G+ +Y ++ S + +FS P ++ +D +P
Sbjct: 589 FVADAKISTEELWFIEHDFNGTFWGARDNYRRWDPSAPERILQFSTPQLVIHSDQDYRLP 648
Query: 664 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG-------H 716
+ ++ L+E G+P + + E H K EN +Q + + R G
Sbjct: 649 VAEGLAMFNVLQERGVPSRFLNFPDENHWVLKQENSLVWHQQMLGWLNRYSGIEEANPDA 708
Query: 717 FDVADEIIPI 726
+ D IIP+
Sbjct: 709 VSLDDTIIPV 718
|
Extracellular dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 732 | ||||||
| 225458521 | 675 | PREDICTED: uncharacterized protein LOC10 | 0.922 | 1.0 | 0.810 | 0.0 | |
| 255538410 | 731 | acylamino-acid-releasing enzyme, putativ | 0.987 | 0.989 | 0.748 | 0.0 | |
| 224067282 | 672 | predicted protein [Populus trichocarpa] | 0.916 | 0.998 | 0.800 | 0.0 | |
| 225458519 | 677 | PREDICTED: uncharacterized protein LOC10 | 0.916 | 0.991 | 0.800 | 0.0 | |
| 356527044 | 681 | PREDICTED: uncharacterized protein LOC10 | 0.928 | 0.998 | 0.781 | 0.0 | |
| 357459569 | 732 | Acyl-peptide hydrolase-like protein [Med | 0.991 | 0.991 | 0.723 | 0.0 | |
| 449446971 | 734 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.985 | 0.719 | 0.0 | |
| 145358557 | 730 | alpha/beta-hydrolase domain-containing p | 0.901 | 0.904 | 0.778 | 0.0 | |
| 9759033 | 678 | acyl-peptide hydrolase-like [Arabidopsis | 0.920 | 0.994 | 0.763 | 0.0 | |
| 356567356 | 674 | PREDICTED: uncharacterized protein LOC10 | 0.915 | 0.994 | 0.747 | 0.0 |
| >gi|225458521|ref|XP_002284264.1| PREDICTED: uncharacterized protein LOC100262703 [Vitis vinifera] gi|302142369|emb|CBI19572.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1149 bits (2972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/682 (81%), Positives = 608/682 (89%), Gaps = 7/682 (1%)
Query: 51 MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
MAST+ + +DK+TAP+GSWKSP+TADVVSGA KRLGGTAVD GRLI+LESRPT
Sbjct: 1 MASTA-------SAEDKLTAPFGSWKSPITADVVSGAEKRLGGTAVDARGRLIFLESRPT 53
Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
E+GR VLVKE KAG+EP DITPKE++VRT AQEYGGGAF+I GDTVIFSNYKDQRLYK
Sbjct: 54 ESGRSVLVKESGKAGEEPIDITPKEFSVRTVAQEYGGGAFKISGDTVIFSNYKDQRLYKQ 113
Query: 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230
SI S+ SSP PITPDYG P V YADG+FD RF+R++TVREDRR+ +LN T IVAI L
Sbjct: 114 SISSEYSSPSPITPDYGGPAVCYADGVFDSRFDRFITVREDRRESSLNPITTIVAIDLRD 173
Query: 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 290
NIQEPKVLV+G+DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGD+ KR
Sbjct: 174 NNIQEPKVLVAGNDFYAFPRLDPKGERLAWIEWSHPNMPWDKTELWVGYISENGDICKRT 233
Query: 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 350
CVAGFDP ++ESPTEPKWSSKGELFF+TDRK+GFWNLH+WIESNNEV+A+YS+DAEF+RP
Sbjct: 234 CVAGFDPKLLESPTEPKWSSKGELFFITDRKSGFWNLHRWIESNNEVVAVYSMDAEFARP 293
Query: 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGN 410
LW+FG+NSYE +QSHG+K LIACSYRQNGRSY+GILD SLSLLD PFTDI+NIT G
Sbjct: 294 LWIFGMNSYEFLQSHGQKELIACSYRQNGRSYIGILDAVQSSLSLLDTPFTDINNITSGT 353
Query: 411 DCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEV 470
+ +VEGAS V P SVAKVTLDD K K VDFK++ SSSPD+ KYKSYFSLPE IEFPTEV
Sbjct: 354 EFFYVEGASTVHPLSVAKVTLDDQKSKVVDFKIIRSSSPDSSKYKSYFSLPEFIEFPTEV 413
Query: 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV 530
PGQ AYAY+YPPSNPIYQA EE+PPLL+KSHGGPTSE RGILNLSIQYWTSRGWAFVDV
Sbjct: 414 PGQNAYAYFYPPSNPIYQAGQEERPPLLLKSHGGPTSETRGILNLSIQYWTSRGWAFVDV 473
Query: 531 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA 590
NYGGSTGYGRE+RERLLGRWGIVDVNDCCSCA FLV SGK D RLCITGGSAGGYTTLA
Sbjct: 474 NYGGSTGYGREYRERLLGRWGIVDVNDCCSCARFLVESGKVDGDRLCITGGSAGGYTTLA 533
Query: 591 ALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCP 650
ALAFR+TFKAGASLYGVADLS+LRAETHKFES YIDNLVG E DY+E+SPINFVDKFSCP
Sbjct: 534 ALAFRETFKAGASLYGVADLSLLRAETHKFESHYIDNLVGGESDYFERSPINFVDKFSCP 593
Query: 651 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710
IILFQGLEDKVVPP QARKIY+ALKE GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF
Sbjct: 594 IILFQGLEDKVVPPVQARKIYQALKEKGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 653
Query: 711 ARVVGHFDVADEIIPIKIDNFD 732
AR+VGHF VADEI PIKIDNFD
Sbjct: 654 ARLVGHFKVADEITPIKIDNFD 675
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538410|ref|XP_002510270.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] gi|223550971|gb|EEF52457.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1144 bits (2959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/728 (74%), Positives = 622/728 (85%), Gaps = 5/728 (0%)
Query: 7 SAITTLTRFSASSSSASINFKYIFSRRTVFTASPKR---QKQRGCKIMASTSPVPETYSA 63
S+ TLTR S + +++ FK R + ++ Q+Q K MAS++ P ++
Sbjct: 5 SSAITLTRLSYYHTCSTL-FKLSHQIRILTCPISRKRYQQRQHNYKTMASSTQ-PLESAS 62
Query: 64 TQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAK 123
Q+ APYGSWKSP+TADVVSGASKRLGGTAVDG+GRL WLESRPTEAGR VLVKE K
Sbjct: 63 KQETTAAPYGSWKSPITADVVSGASKRLGGTAVDGNGRLFWLESRPTEAGRSVLVKEADK 122
Query: 124 AGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPIT 183
GD+ +DITPK+Y+VR+TAQEYGGGAF I GDTVIF+NYKDQRLYK S+DS+DS P+P+T
Sbjct: 123 QGDKTTDITPKDYSVRSTAQEYGGGAFTISGDTVIFANYKDQRLYKQSVDSRDSPPVPLT 182
Query: 184 PDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243
PDYG P VSYADG+FD FNR+VT+ EDRR ++++ T IV + L+ +NIQEPKVL+SG+
Sbjct: 183 PDYGSPSVSYADGVFDSLFNRFVTIMEDRRLSSMDAVTTIVTVGLSDENIQEPKVLLSGN 242
Query: 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303
DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGDVYKR+CVAG D +VESP
Sbjct: 243 DFYAFPRIDPKGERIAWIEWGHPNMPWDKTELWVGYISENGDVYKRICVAGCDTAVVESP 302
Query: 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ 363
TEPKWSS GELFF+TDR++GFWNL+KW+ES NEV A+Y L AEFSRPLWVFG NSYE+IQ
Sbjct: 303 TEPKWSSTGELFFITDRRSGFWNLYKWVESVNEVQALYPLAAEFSRPLWVFGTNSYELIQ 362
Query: 364 SHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEP 423
++ K+LIACSYRQ GRSYLGILD SLSLLDIPFTDIDNI+ GN+CL++EGAS V P
Sbjct: 363 NNEGKHLIACSYRQKGRSYLGILDYAESSLSLLDIPFTDIDNISSGNNCLYIEGASAVHP 422
Query: 424 SSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPS 483
SVAK+ LDD K DFK+VWSSSPD+LKY SYFSLPE IEFPTEVPGQ AYAY+YPPS
Sbjct: 423 PSVAKLDLDDRGSKVADFKIVWSSSPDSLKYASYFSLPEFIEFPTEVPGQNAYAYFYPPS 482
Query: 484 NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543
NP+YQASPEEKPPLL+KSHGGPT + RGILN SIQYWTSRGWAFVDVNYGGSTGYGRE+R
Sbjct: 483 NPMYQASPEEKPPLLLKSHGGPTGDTRGILNPSIQYWTSRGWAFVDVNYGGSTGYGREYR 542
Query: 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 603
ERL+ WGI DVNDCCSCA FLV +GKAD +RLCITGGSAGGYTTLAALAF++TFKAGAS
Sbjct: 543 ERLIKNWGITDVNDCCSCAKFLVDTGKADGERLCITGGSAGGYTTLAALAFKETFKAGAS 602
Query: 604 LYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVP 663
LYGVADLSMLRAETHKFES YIDNLVG EKDY+E+SPINFVD FSCPIILFQGLEDKVV
Sbjct: 603 LYGVADLSMLRAETHKFESHYIDNLVGDEKDYFERSPINFVDGFSCPIILFQGLEDKVVA 662
Query: 664 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADEI 723
PDQAR IY ALK+ G+PVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR+VGHF+VADEI
Sbjct: 663 PDQARTIYNALKKKGVPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARLVGHFNVADEI 722
Query: 724 IPIKIDNF 731
PIK+DN
Sbjct: 723 TPIKVDNI 730
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224067282|ref|XP_002302446.1| predicted protein [Populus trichocarpa] gi|222844172|gb|EEE81719.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/683 (80%), Positives = 610/683 (89%), Gaps = 12/683 (1%)
Query: 51 MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
MAS++ V + +A QDKITAPYGSWKSP+TADVVSGASKRLGG AVD HG L W+ESRP+
Sbjct: 1 MASSTQVADA-TAKQDKITAPYGSWKSPITADVVSGASKRLGGIAVDDHGHLFWVESRPS 59
Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
E+GR VLV+E K G+EP+DITPKE+AVRTTAQEYGGGAF I DTVI+SNYKDQRLYK
Sbjct: 60 ESGRAVLVREADKPGEEPTDITPKEFAVRTTAQEYGGGAFTISADTVIYSNYKDQRLYKQ 119
Query: 171 SIDSK-DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229
SI SK DSSP+P+TPDYG P+VSYADG+FD RFNR+VTV EDRR + NSTT IVA+ L+
Sbjct: 120 SIKSKVDSSPVPLTPDYGGPVVSYADGVFDLRFNRFVTVMEDRRVSSTNSTTTIVAVGLS 179
Query: 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR 289
++IQEPKVLVSG+DFYAFPR+DP+GER+AWIEW HPNMPWDK ELWVGYISENGDV+ R
Sbjct: 180 DKSIQEPKVLVSGNDFYAFPRIDPKGERIAWIEWGHPNMPWDKTELWVGYISENGDVHNR 239
Query: 290 VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349
+CVAG DPT+VESPTEPKWSSKGELFF+TDRK+GFWNL+KWIES NEV AIYSLDAEFS
Sbjct: 240 ICVAGCDPTLVESPTEPKWSSKGELFFITDRKSGFWNLYKWIESVNEVQAIYSLDAEFST 299
Query: 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLG 409
PLW+FGINSYE+IQ++ KNLIACSYRQNGRS+LGILDD SLSLLDIPFTDI+++T
Sbjct: 300 PLWIFGINSYELIQNNEGKNLIACSYRQNGRSFLGILDDVQSSLSLLDIPFTDINHMTSW 359
Query: 410 NDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 469
N CL+VEGAS + PSSVAKV D ++WSSSPD+LKYKSYFSLPELIEFPTE
Sbjct: 360 NRCLYVEGASAIHPSSVAKVLQD----------IIWSSSPDSLKYKSYFSLPELIEFPTE 409
Query: 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 529
VPGQ AYAY+YPPSNPIYQAS EEKPPLL+KSHGGPTSE RGILNLSIQYWTSRGWAFVD
Sbjct: 410 VPGQNAYAYFYPPSNPIYQASQEEKPPLLLKSHGGPTSETRGILNLSIQYWTSRGWAFVD 469
Query: 530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589
VNYGGSTGYGRE+RERLL +WGIVDVNDCCSC FLV +GK D +RLCITGGSAGGYTTL
Sbjct: 470 VNYGGSTGYGREYRERLLNKWGIVDVNDCCSCGKFLVDNGKVDSERLCITGGSAGGYTTL 529
Query: 590 AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC 649
AALAF++TFKAGASLYGVADLSMLRAETHKFES YIDNLVG+E+DY+E+SPINFVD+FSC
Sbjct: 530 AALAFKETFKAGASLYGVADLSMLRAETHKFESHYIDNLVGTEEDYFERSPINFVDRFSC 589
Query: 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709
PIILFQGLEDKVVPPDQARKIY ALK+ GLPVALVEYEGEQHGFRKAENIKFTLEQQM+F
Sbjct: 590 PIILFQGLEDKVVPPDQARKIYLALKKKGLPVALVEYEGEQHGFRKAENIKFTLEQQMLF 649
Query: 710 FARVVGHFDVADEIIPIKIDNFD 732
FAR+VG F VADEI PI+IDN D
Sbjct: 650 FARLVGRFTVADEIDPIRIDNLD 672
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458519|ref|XP_002284254.1| PREDICTED: uncharacterized protein LOC100267853 [Vitis vinifera] gi|302142370|emb|CBI19573.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/671 (80%), Positives = 597/671 (88%)
Query: 62 SATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEP 121
+A+QDK+TAPYGSWKSP+TAD+VSGA KRLGGTAVDG GRLIWLE+RPTE+GRGVLVKE
Sbjct: 7 AASQDKVTAPYGSWKSPITADIVSGADKRLGGTAVDGDGRLIWLETRPTESGRGVLVKES 66
Query: 122 AKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP 181
AG EP DITPKE++VRT AQEYGGG F+I G T++FSNY DQRLYK SI S D SP+P
Sbjct: 67 ETAGGEPIDITPKEFSVRTVAQEYGGGDFKISGHTLLFSNYTDQRLYKQSISSGDPSPVP 126
Query: 182 ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241
ITPDYGE V YADGIFD RF+RYVTVRED R+ +LN +T IVAI L+ NIQEPKVLV
Sbjct: 127 ITPDYGEQAVRYADGIFDSRFDRYVTVREDSRESSLNPSTTIVAIDLSDNNIQEPKVLVG 186
Query: 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301
GSDFYAFPRMD +GER+AWIEW HPNMPWDKAELWVGYISENGD+ KR+CVAG DPT++E
Sbjct: 187 GSDFYAFPRMDSKGERIAWIEWSHPNMPWDKAELWVGYISENGDICKRICVAGCDPTLLE 246
Query: 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 361
SPTEPKWSS+GELFF+TDRK+GFWNL++WIES+NEV+A+Y+LDAEFSRPLWVFGI+SYE
Sbjct: 247 SPTEPKWSSRGELFFITDRKSGFWNLYRWIESSNEVVAVYALDAEFSRPLWVFGISSYEF 306
Query: 362 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGV 421
+QS G+K LI CSYRQNGRSYLGILD LS LDIPFTDI+NI+ G DC ++EGAS V
Sbjct: 307 LQSGGQKELIVCSYRQNGRSYLGILDVVNSLLSALDIPFTDINNISSGIDCFYIEGASAV 366
Query: 422 EPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYP 481
P S+AKVTLDDHK +AV FK++WSSS D +YKSYFSLPELIEFPTEVPGQ AYAY+YP
Sbjct: 367 HPLSLAKVTLDDHKSEAVGFKIIWSSSADISEYKSYFSLPELIEFPTEVPGQNAYAYFYP 426
Query: 482 PSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541
PSNPIYQAS +EKPPLL++SHGGPT EA LNLSIQYWTSRGWAFVDVNYGGSTGYGRE
Sbjct: 427 PSNPIYQASQDEKPPLLLESHGGPTDEAHQSLNLSIQYWTSRGWAFVDVNYGGSTGYGRE 486
Query: 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 601
FRERLLGRWGIVDVNDCCSCA FLV SGK D KRLC TGGSAGG+TTLAALAF++ FKAG
Sbjct: 487 FRERLLGRWGIVDVNDCCSCAKFLVDSGKVDGKRLCATGGSAGGFTTLAALAFKEIFKAG 546
Query: 602 ASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKV 661
ASLYG+ADLSMLRA KFES YIDNLVGSE Y+E+SPINFVDKFSCPIILFQGLEDKV
Sbjct: 547 ASLYGIADLSMLRAGMPKFESHYIDNLVGSESAYFERSPINFVDKFSCPIILFQGLEDKV 606
Query: 662 VPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVAD 721
VPP+QARKIY ALK+ GLPVALV+YEGEQHGFRKAENIKFTLEQQMVFFARVVGHF+VAD
Sbjct: 607 VPPEQARKIYLALKKKGLPVALVQYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFEVAD 666
Query: 722 EIIPIKIDNFD 732
+I PIKIDNFD
Sbjct: 667 QITPIKIDNFD 677
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527044|ref|XP_003532124.1| PREDICTED: uncharacterized protein LOC100784480 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1130 bits (2922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/683 (78%), Positives = 602/683 (88%), Gaps = 3/683 (0%)
Query: 51 MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
MAS++ T + ++ITAPYGSWKSP+T DVVSGASKRLGGTAVDG GRLIWLESRP
Sbjct: 1 MASSAAT--TIPSLSERITAPYGSWKSPITTDVVSGASKRLGGTAVDGRGRLIWLESRPA 58
Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
E+GRGVLV EP G E DITPKE+ VRT AQEYGGGAF + GD V F+NYKDQRLYK
Sbjct: 59 ESGRGVLVVEPENPGGEAVDITPKEFGVRTVAQEYGGGAFTVSGDVVFFANYKDQRLYKQ 118
Query: 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230
SI S D P+P+TPDYG P+VSYADGI D RFNR+++VREDR + + N TT IV+IAL
Sbjct: 119 SISSLDVPPIPLTPDYGGPVVSYADGILDVRFNRFISVREDRCESSQNPTTTIVSIALGS 178
Query: 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 290
++ QEP+VLV GSDFYAFPR+DP+ ERMAWI+W HPNMPWDK+ELWVGYISENG++YKRV
Sbjct: 179 KDAQEPQVLVGGSDFYAFPRLDPKSERMAWIQWSHPNMPWDKSELWVGYISENGEIYKRV 238
Query: 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 350
CVAG +P++VESPTEPKWSS GELFF+TDR+NGFWNLHKWIES N+VL +YSL+AEF+RP
Sbjct: 239 CVAGNNPSLVESPTEPKWSSDGELFFITDRENGFWNLHKWIESENKVLPVYSLEAEFARP 298
Query: 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLSLLDIPFTDIDNITLG 409
LW+FG+NSYE +QSH KNLIACSYRQ G+SYLGI+DD G L++LDIPFTDIDNIT
Sbjct: 299 LWIFGMNSYEFLQSHTRKNLIACSYRQQGKSYLGIIDDVKGSKLTVLDIPFTDIDNITSS 358
Query: 410 NDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 469
N+ LFVEGAS V PSSVAKVTLD+ K KAVDF ++WSSSPD+LKY SYFS PELIEFPTE
Sbjct: 359 NNYLFVEGASAVHPSSVAKVTLDNDKSKAVDFNIIWSSSPDSLKYSSYFSKPELIEFPTE 418
Query: 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 529
VPGQ AYAY+YPP+NP +QAS EEKPPLL+KSHGGPT+E RGILNLSIQYWTSRGWAFVD
Sbjct: 419 VPGQNAYAYFYPPTNPDFQASEEEKPPLLLKSHGGPTAETRGILNLSIQYWTSRGWAFVD 478
Query: 530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589
VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT+LV SGK D +RLCITGGSAGGYTTL
Sbjct: 479 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATYLVNSGKVDGERLCITGGSAGGYTTL 538
Query: 590 AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC 649
AALAF++TFKAGASLYGVAD++MLRAETHKFES YID L G EK YE+SPIN VDKFSC
Sbjct: 539 AALAFKETFKAGASLYGVADVNMLRAETHKFESHYIDRLGGGEKGCYERSPINHVDKFSC 598
Query: 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709
PIILFQGL+DKVVPP+QARKIY+ALKE G+PVALVEYEGEQHGFRKAENIKFTLEQQMVF
Sbjct: 599 PIILFQGLDDKVVPPEQARKIYQALKEKGVPVALVEYEGEQHGFRKAENIKFTLEQQMVF 658
Query: 710 FARVVGHFDVADEIIPIKIDNFD 732
FAR+VGHF+VAD+I PIKIDNFD
Sbjct: 659 FARLVGHFNVADDINPIKIDNFD 681
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357459569|ref|XP_003600065.1| Acyl-peptide hydrolase-like protein [Medicago truncatula] gi|355489113|gb|AES70316.1| Acyl-peptide hydrolase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/738 (72%), Positives = 616/738 (83%), Gaps = 12/738 (1%)
Query: 1 MAISLLSAIT--TLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVP 58
MA SA+T TLTR S+SSS S K +F+ F++ Q+ R C ST+
Sbjct: 1 MATLASSALTLITLTRSSSSSSHYS---KCLFNH---FSSKTHHQRSRFCSFNTSTTKTM 54
Query: 59 ETYS--ATQDKIT-APYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRG 115
+Y+ + D IT APYGSWKSP+TADVVSGASKRLGGTAVDG GRLIWLESRPTE+GR
Sbjct: 55 ASYTPPSESDTITTAPYGSWKSPITADVVSGASKRLGGTAVDGRGRLIWLESRPTESGRA 114
Query: 116 VLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSK 175
VLV EP G E DITPKE+ VRT AQEYGGGAF + GD V F+NYKDQRLYK SI S
Sbjct: 115 VLVLEPENPGGEAVDITPKEFGVRTLAQEYGGGAFTVAGDVVFFANYKDQRLYKQSITSL 174
Query: 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235
D P+P+TPDYG P+VSYADG+ D RFNR++ VREDRR+ + N T IV+IAL ++ E
Sbjct: 175 DVPPIPLTPDYGGPVVSYADGVLDTRFNRFIAVREDRRESSQNPPTTIVSIALGSKDDHE 234
Query: 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF 295
P+VLV GSDFYAFPR+ P+ E++AWI+W HPNMPWDK+ELWVGYISENG++YKRVCVAG
Sbjct: 235 PEVLVGGSDFYAFPRLGPKSEKIAWIQWSHPNMPWDKSELWVGYISENGEIYKRVCVAGN 294
Query: 296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFG 355
DP++VESPTEPKWSS GELFF+TDR +GFWNLHKWIES N+ + +YSLDAEF+RPLWVFG
Sbjct: 295 DPSVVESPTEPKWSSDGELFFITDRGSGFWNLHKWIESENKAVPVYSLDAEFARPLWVFG 354
Query: 356 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GHSLSLLDIPFTDIDNITLGNDCLF 414
+NSYE ++S ++NLIACSYRQ G SYLGI++D G +LS+LDIPFTDIDNIT G DCLF
Sbjct: 355 MNSYEFVKSPKQRNLIACSYRQKGVSYLGIIEDAQGSNLSVLDIPFTDIDNITSGTDCLF 414
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
VEGAS V PSSVAKV LDD K K VDF ++WSSSPD+LKY SY S PELIEFPTEVPGQ
Sbjct: 415 VEGASAVLPSSVAKVALDDKKSKVVDFNIIWSSSPDSLKYSSYISKPELIEFPTEVPGQN 474
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
AYAY+YPPSNP Y+A EKPPLL+KSHGGPT+E GILNLSIQYWTSRGWAF DVNYGG
Sbjct: 475 AYAYFYPPSNPTYRAIEGEKPPLLLKSHGGPTAETHGILNLSIQYWTSRGWAFADVNYGG 534
Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
STGYGRE+R+RLLGRWGIVDVNDCCSCAT+LV SGK D +RLCITGGSAGGYTTLAALAF
Sbjct: 535 STGYGREYRDRLLGRWGIVDVNDCCSCATYLVDSGKVDGERLCITGGSAGGYTTLAALAF 594
Query: 595 RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILF 654
+DTFKAGASLYGVADL +L ETHKFES YIDNLVG EK ++E+SPIN VDKFSCPIILF
Sbjct: 595 KDTFKAGASLYGVADLKLLVEETHKFESHYIDNLVGGEKAWFERSPINHVDKFSCPIILF 654
Query: 655 QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714
QGLEDKVVPP QAR+IY+ALK+ G+PVAL+EYEGEQHGFRKAENIK+TLEQQM+FFAR++
Sbjct: 655 QGLEDKVVPPSQAREIYQALKKKGVPVALIEYEGEQHGFRKAENIKYTLEQQMLFFARLI 714
Query: 715 GHFDVADEIIPIKIDNFD 732
G F+VAD+I P+KI+NFD
Sbjct: 715 GRFNVADDITPVKIENFD 732
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446971|ref|XP_004141243.1| PREDICTED: uncharacterized protein LOC101211004 [Cucumis sativus] gi|449498688|ref|XP_004160606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226296 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1100 bits (2845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/732 (71%), Positives = 615/732 (84%), Gaps = 9/732 (1%)
Query: 8 AITTLTRFSASSSSASINFKYIFSRRTVFTASPKRQKQRGCKIMA-------STSPVPET 60
A+ L RF + SS NF + +R ++ T S ++Q + K M +T+ P
Sbjct: 5 ALLRLFRFPSPSSLFISNFNPL-NRASINTLSTRKQFRSYNKTMTSSMSSSPNTTNDPPQ 63
Query: 61 YSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKE 120
S KITAPYGSW SP+TADVV+GASKRLGGTAV +G LIWLESRPTE+GRGVLVKE
Sbjct: 64 LSDQLPKITAPYGSWSSPITADVVTGASKRLGGTAVTANGHLIWLESRPTESGRGVLVKE 123
Query: 121 PAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL 180
K GDEP DITPKE++VR T QEYGGGAF + GD V+FSNY DQRLYK S++S D SP
Sbjct: 124 SVKEGDEPCDITPKEFSVRNTTQEYGGGAFTVAGDIVVFSNYSDQRLYKQSLNS-DLSPQ 182
Query: 181 PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240
+TPDYG VSYADG+FD RFNR++TV+ED RQ +LN T IV++ L+G++I EPKVLV
Sbjct: 183 ALTPDYGGRSVSYADGVFDSRFNRFITVQEDGRQSSLNPITTIVSVELDGKDINEPKVLV 242
Query: 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300
G+DFYAFPR+DP+GER+AWIEW HPNMPWDK+ELWVGY+SENG+VYKRVCVAG DP +V
Sbjct: 243 GGNDFYAFPRVDPKGERIAWIEWGHPNMPWDKSELWVGYLSENGEVYKRVCVAGGDPKLV 302
Query: 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE 360
ESPTEPKWS++GEL+F+TDR+ GFWNL+KW E+NNEV IYSL AEFSRPLWVFG NSY+
Sbjct: 303 ESPTEPKWSAQGELYFITDRQTGFWNLYKWFEANNEVAPIYSLSAEFSRPLWVFGTNSYD 362
Query: 361 IIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASG 420
++++ +N+I CSYRQ GRSYLG+LD+ SLSLLDIPFTDI+NI LG+DC++VEG+SG
Sbjct: 363 LLKTGDGRNIIVCSYRQRGRSYLGVLDETQSSLSLLDIPFTDIENIALGSDCIYVEGSSG 422
Query: 421 VEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYY 480
+ PSS+AKVTL++ L+ V F ++WSSSPD LK+KSYFSLPE IEFPTEVPGQ AYAY+Y
Sbjct: 423 LHPSSIAKVTLNERSLEVVGFTIIWSSSPDILKFKSYFSLPEFIEFPTEVPGQNAYAYFY 482
Query: 481 PPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540
PPSNP YQASP EKPPLL+KSHGGPT+E RG LN SIQYWTSRGW +VDVNYGGSTGYGR
Sbjct: 483 PPSNPKYQASPNEKPPLLLKSHGGPTAETRGNLNPSIQYWTSRGWGYVDVNYGGSTGYGR 542
Query: 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKA 600
E+RERLL +WGIVDVNDCCSCA FLV SGK D ++LCITGGSAGGYTTLAALAFRDTFKA
Sbjct: 543 EYRERLLRQWGIVDVNDCCSCARFLVESGKVDGEQLCITGGSAGGYTTLAALAFRDTFKA 602
Query: 601 GASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK 660
GASLYG+ADL +LRA+THKFES YIDNLVG+EKDY+++SPINFVDKFSCPIILFQGLEDK
Sbjct: 603 GASLYGIADLRLLRADTHKFESHYIDNLVGNEKDYFDRSPINFVDKFSCPIILFQGLEDK 662
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVA 720
VV P+Q+RKIY ALKE GLPVALVEYEGEQHGFRKAENIKFTLEQQM+FFAR VG F VA
Sbjct: 663 VVLPNQSRKIYNALKEKGLPVALVEYEGEQHGFRKAENIKFTLEQQMMFFARTVGRFQVA 722
Query: 721 DEIIPIKIDNFD 732
D I P+KIDNFD
Sbjct: 723 DAINPLKIDNFD 734
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358557|ref|NP_198470.3| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gi|332006674|gb|AED94057.1| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1095 bits (2833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/665 (77%), Positives = 582/665 (87%), Gaps = 5/665 (0%)
Query: 69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
TAPYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP E+GRGVLV + G+
Sbjct: 69 TAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPNESGRGVLVLQ----GETS 124
Query: 129 SDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG 187
DITPK++AVRT QEYGGGAF+I D T++FSNYKDQRLYK I KDSSP PITPDYG
Sbjct: 125 IDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYKQDITDKDSSPKPITPDYG 184
Query: 188 EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA 247
P V+YADG+FD RFNRYVTVRED RQD N T IV + L+G+ ++EPKVLVSG+DFYA
Sbjct: 185 TPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLSGETLEEPKVLVSGNDFYA 244
Query: 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307
FPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++ KRVCVAG DP VESPTEPK
Sbjct: 245 FPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNIDKRVCVAGCDPKYVESPTEPK 304
Query: 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGE 367
WSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF++PLW+FG NSYEII+ E
Sbjct: 305 WSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEFAKPLWIFGTNSYEIIECSEE 364
Query: 368 KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVA 427
KNLIACSYRQ G+SYLGI+DD S SLLDIP TD D+ITLGN CL+VEGAS V P SVA
Sbjct: 365 KNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLGNQCLYVEGASAVLPPSVA 424
Query: 428 KVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIY 487
+VTLD HK KA+ ++VWSSSPD LKYK+YFS+PELIEFPTEVPGQ AYAY+YPP+NP+Y
Sbjct: 425 RVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFPTEVPGQNAYAYFYPPTNPLY 484
Query: 488 QASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 547
AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAFVDVNYGGSTGYGRE+RERLL
Sbjct: 485 NASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTGYGREYRERLL 544
Query: 548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGV 607
+WGIVDV+DCC CA +LV SGKAD KRLCI+GGSAGGYTTLA+LAFRD FKAGASLYGV
Sbjct: 545 RQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYTTLASLAFRDVFKAGASLYGV 604
Query: 608 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA 667
ADL ML+ E HKFESRYIDNLVG EKD+YE+SPINFVDKFSCPIILFQGLEDKVV PDQ+
Sbjct: 605 ADLKMLKEEGHKFESRYIDNLVGDEKDFYERSPINFVDKFSCPIILFQGLEDKVVTPDQS 664
Query: 668 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADEIIPIK 727
RKIY+ALK+ GLPVALVEYEGEQHGFRKAENIK+TLEQQMVFFARVVG F VAD+I P+K
Sbjct: 665 RKIYEALKKKGLPVALVEYEGEQHGFRKAENIKYTLEQQMVFFARVVGGFKVADDITPLK 724
Query: 728 IDNFD 732
IDNFD
Sbjct: 725 IDNFD 729
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9759033|dbj|BAB09360.1| acyl-peptide hydrolase-like [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/685 (76%), Positives = 590/685 (86%), Gaps = 11/685 (1%)
Query: 51 MASTSPVPETYSATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPT 110
M+S+SP +A TAPYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP
Sbjct: 1 MSSSSPD----AAQTPLTTAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPN 56
Query: 111 EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYK 169
E+GRGVLV + G+ DITPK++AVRT QEYGGGAF+I D T++FSNYKDQRLYK
Sbjct: 57 ESGRGVLVLQ----GETSIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYK 112
Query: 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229
I KDSSP PITPDYG P V+YADG+FD RFNRYVTVRED RQD N T IV + L+
Sbjct: 113 QDITDKDSSPKPITPDYGTPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLS 172
Query: 230 GQNIQ--EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY 287
G+ ++ EPKVLVSG+DFYAFPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++
Sbjct: 173 GETLEDPEPKVLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNID 232
Query: 288 KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF 347
KRVCVAG DP VESPTEPKWSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF
Sbjct: 233 KRVCVAGCDPKYVESPTEPKWSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEF 292
Query: 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNIT 407
++PLW+FG NSYEII+ EKNLIACSYRQ G+SYLGI+DD S SLLDIP TD D+IT
Sbjct: 293 AKPLWIFGTNSYEIIECSEEKNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSIT 352
Query: 408 LGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFP 467
LGN CL+VEGAS V P SVA+VTLD HK KA+ ++VWSSSPD LKYK+YFS+PELIEFP
Sbjct: 353 LGNQCLYVEGASAVLPPSVARVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFP 412
Query: 468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAF 527
TEVPGQ AYAY+YPP+NP+Y AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAF
Sbjct: 413 TEVPGQNAYAYFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAF 472
Query: 528 VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587
VDVNYGGSTGYGRE+RERLL +WGIVDV+DCC CA +LV SGKAD KRLCI+GGSAGGYT
Sbjct: 473 VDVNYGGSTGYGREYRERLLRQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYT 532
Query: 588 TLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 647
TLA+LAFRD FKAGASLYGVADL ML+ E HKFESRYIDNLVG EKD+YE+SPINFVDKF
Sbjct: 533 TLASLAFRDVFKAGASLYGVADLKMLKEEGHKFESRYIDNLVGDEKDFYERSPINFVDKF 592
Query: 648 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQM 707
SCPIILFQGLEDKVV PDQ+RKIY+ALK+ GLPVALVEYEGEQHGFRKAENIK+TLEQQM
Sbjct: 593 SCPIILFQGLEDKVVTPDQSRKIYEALKKKGLPVALVEYEGEQHGFRKAENIKYTLEQQM 652
Query: 708 VFFARVVGHFDVADEIIPIKIDNFD 732
VFFARVVG F VAD+I P+KIDNFD
Sbjct: 653 VFFARVVGGFKVADDITPLKIDNFD 677
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567356|ref|XP_003551887.1| PREDICTED: uncharacterized protein LOC100794040 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1082 bits (2798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/670 (74%), Positives = 582/670 (86%)
Query: 63 ATQDKITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPA 122
+T TAPYGSWKSP+T+D VSGA+K LGGT +DG GRLIWLE RPTE+GRGVLV EP
Sbjct: 4 STATVTTAPYGSWKSPITSDDVSGATKDLGGTTIDGRGRLIWLEFRPTESGRGVLVLEPE 63
Query: 123 KAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPI 182
G E DITPKE+ VRT AQEYGGGAF + GD V F+NY DQRLYK SI S D P+P+
Sbjct: 64 NNGGEAVDITPKEFGVRTLAQEYGGGAFTVSGDVVFFANYNDQRLYKQSISSLDVPPVPL 123
Query: 183 TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242
TPDYG PLVSYADG D RFNR+++VREDRR+ +LN T IV+IAL +++QEP+VLVSG
Sbjct: 124 TPDYGGPLVSYADGRLDARFNRFISVREDRRESSLNPPTTIVSIALGSKDLQEPEVLVSG 183
Query: 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302
SDFYAFPR+D + ER+ WI+W+HP+MPWDK ELWVGYISENG++YKRVC+AG DP+ VES
Sbjct: 184 SDFYAFPRLDSKSERITWIQWNHPSMPWDKTELWVGYISENGEIYKRVCIAGNDPSRVES 243
Query: 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEII 362
PTEPKWS GELFFVTD++NGFWN+HKWIE N+V+++YSL+AEF+RPLW +G+NSYE +
Sbjct: 244 PTEPKWSLDGELFFVTDKENGFWNIHKWIEFENKVVSVYSLEAEFTRPLWTYGMNSYEFV 303
Query: 363 QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVE 422
+S +KNLIACSYRQ+G+SYLGI+D G L+++D P TDI+NIT GNDCL+VEGAS V
Sbjct: 304 ESSKQKNLIACSYRQHGKSYLGIIDVQGSKLTVIDFPCTDINNITSGNDCLYVEGASEVL 363
Query: 423 PSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPP 482
PSSVAKVT DD K KAVDF ++WSSSPD+LKY SY S PE IEFPTEVPGQ AYAY+YPP
Sbjct: 364 PSSVAKVTFDDDKSKAVDFNIIWSSSPDSLKYSSYISKPEFIEFPTEVPGQNAYAYFYPP 423
Query: 483 SNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542
SNP +QAS EEKPPLL+KSHGGPT E RGILNLS+QYWTSRGWA VDVNYGGSTGYGR +
Sbjct: 424 SNPDFQASKEEKPPLLLKSHGGPTQETRGILNLSVQYWTSRGWAVVDVNYGGSTGYGRVY 483
Query: 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGA 602
RERLL +WGIVDVNDCCSCAT+LV SGK D++RLCI GGSAGGYTTLA LAFRDTF+AGA
Sbjct: 484 RERLLRQWGIVDVNDCCSCATYLVDSGKVDKERLCIMGGSAGGYTTLAVLAFRDTFQAGA 543
Query: 603 SLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVV 662
SLYG+ADL++LRAETHKFES Y++NLVG +KD YE+SPIN VD FSCPII+FQGLEDKVV
Sbjct: 544 SLYGIADLNLLRAETHKFESHYVENLVGDDKDMYERSPINHVDNFSCPIIIFQGLEDKVV 603
Query: 663 PPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADE 722
PPDQARKIY+A+KE G+PVALVEYEGEQHGFRKAENIKFTLEQ+MVFFAR++GHFDVAD+
Sbjct: 604 PPDQARKIYQAVKEKGVPVALVEYEGEQHGFRKAENIKFTLEQEMVFFARLIGHFDVADD 663
Query: 723 IIPIKIDNFD 732
I PIKIDNFD
Sbjct: 664 ITPIKIDNFD 673
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 732 | ||||||
| TAIR|locus:2183587 | 730 | AT5G36210 [Arabidopsis thalian | 0.991 | 0.994 | 0.725 | 4.6e-295 | |
| TIGR_CMR|CBU_1529 | 636 | CBU_1529 "prolyl oligopeptidas | 0.557 | 0.641 | 0.458 | 5.5e-93 | |
| DICTYBASE|DDB_G0288631 | 700 | DDB_G0288631 "peptidase S9 fam | 0.605 | 0.632 | 0.368 | 7.5e-78 | |
| UNIPROTKB|Q88A85 | 610 | PSPTO_0508 "Uncharacterized pr | 0.443 | 0.532 | 0.391 | 6.8e-69 | |
| WB|WBGene00001057 | 643 | dpf-4 [Caenorhabditis elegans | 0.627 | 0.713 | 0.351 | 3.6e-66 | |
| TIGR_CMR|SO_1686 | 678 | SO_1686 "prolyl oligopeptidase | 0.564 | 0.609 | 0.351 | 1.2e-63 | |
| TIGR_CMR|SO_A0048 | 642 | SO_A0048 "periplasmic prolyl o | 0.307 | 0.350 | 0.337 | 1.7e-26 | |
| TIGR_CMR|SO_4618 | 645 | SO_4618 "prolyl oligopeptidase | 0.267 | 0.303 | 0.321 | 9.6e-23 | |
| TIGR_CMR|SO_4252 | 662 | SO_4252 "prolyl oligopeptidase | 0.304 | 0.336 | 0.319 | 6.6e-21 | |
| WB|WBGene00001059 | 740 | dpf-6 [Caenorhabditis elegans | 0.326 | 0.322 | 0.305 | 5.9e-20 |
| TAIR|locus:2183587 AT5G36210 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2833 (1002.3 bits), Expect = 4.6e-295, P = 4.6e-295
Identities = 533/735 (72%), Positives = 610/735 (82%)
Query: 1 MAISLLSAITTLTRFXXXXXXXXINFKYIFSRRTVFTASPKRQKQRGCKIMASTSPVPET 60
MA+ LL+++ L F SR F++S +R + K + S + + +
Sbjct: 1 MALLLLTSLNHLVSFSLTRLPSSSAHNLFLSRS--FSSSIRRFNRFSLKPLRSFASMSSS 58
Query: 61 Y-SATQDKIT-APYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLV 118
A Q +T APYGSWKSP+TAD+VSGASKRLGGTAVD HGRL+ LESRP E+GRGVLV
Sbjct: 59 SPDAAQTPLTTAPYGSWKSPITADIVSGASKRLGGTAVDSHGRLVLLESRPNESGRGVLV 118
Query: 119 KEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDS 177
+ G+ DITPK++AVRT QEYGGGAF+I D T++FSNYKDQRLYK I KDS
Sbjct: 119 LQ----GETSIDITPKDFAVRTLTQEYGGGAFQISSDDTLVFSNYKDQRLYKQDITDKDS 174
Query: 178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237
SP PITPDYG P V+YADG+FD RFNRYVTVRED RQD N T IV + L+G+ ++EPK
Sbjct: 175 SPKPITPDYGTPAVTYADGVFDSRFNRYVTVREDGRQDRSNPITTIVEVNLSGETLEEPK 234
Query: 238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297
VLVSG+DFYAFPR+DP+ ER+AWIEW HPNMPWDKAELWVGYISE G++ KRVCVAG DP
Sbjct: 235 VLVSGNDFYAFPRLDPKCERLAWIEWSHPNMPWDKAELWVGYISEGGNIDKRVCVAGCDP 294
Query: 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGIN 357
VESPTEPKWSS+GELFFVTDRKNG WN+HKWIES NEV+++Y LD EF++PLW+FG N
Sbjct: 295 KYVESPTEPKWSSRGELFFVTDRKNGCWNIHKWIESTNEVVSVYPLDGEFAKPLWIFGTN 354
Query: 358 SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEG 417
SYEII+ EKNLIACSYRQ G+SYLGI+DD S SLLDIP TD D+ITLGN CL+VEG
Sbjct: 355 SYEIIECSEEKNLIACSYRQKGKSYLGIVDDSQGSCSLLDIPLTDFDSITLGNQCLYVEG 414
Query: 418 ASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYA 477
AS V P SVA+VTLD HK KA+ ++VWSSSPD LKYK+YFS+PELIEFPTEVPGQ AYA
Sbjct: 415 ASAVLPPSVARVTLDQHKTKALSSEIVWSSSPDVLKYKAYFSVPELIEFPTEVPGQNAYA 474
Query: 478 YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
Y+YPP+NP+Y AS EEKPPLLVKSHGGPT+E+RG LNL+IQYWTSRGWAFVDVNYGGSTG
Sbjct: 475 YFYPPTNPLYNASMEEKPPLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTG 534
Query: 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDT 597
YGRE+RERLL +WGIVDV+DCC CA +LV SGKAD KRLCI+GGSAGGYTTLA+LAFRD
Sbjct: 535 YGREYRERLLRQWGIVDVDDCCGCAKYLVSSGKADVKRLCISGGSAGGYTTLASLAFRDV 594
Query: 598 FKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGL 657
FKAGASLYGVADL ML+ E HKFESRYIDNLVG EKD+YE+SPINFVDKFSCPIILFQGL
Sbjct: 595 FKAGASLYGVADLKMLKEEGHKFESRYIDNLVGDEKDFYERSPINFVDKFSCPIILFQGL 654
Query: 658 EDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 717
EDKVV PDQ+RKIY+ALK+ GLPVALVEYEGEQHGFRKAENIK+TLEQQMVFFARVVG F
Sbjct: 655 EDKVVTPDQSRKIYEALKKKGLPVALVEYEGEQHGFRKAENIKYTLEQQMVFFARVVGGF 714
Query: 718 DVADEIIPIKIDNFD 732
VAD+I P+KIDNFD
Sbjct: 715 KVADDITPLKIDNFD 729
|
|
| TIGR_CMR|CBU_1529 CBU_1529 "prolyl oligopeptidase family protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 197/430 (45%), Positives = 272/430 (63%)
Query: 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYE 360
E ++P++S +G L+F++D K+GF NL+ + + +V ++ L+AE P WVF + +Y+
Sbjct: 224 EFVSQPQFSPEGTLYFLSD-KSGFGNLYCY--EDGKVKSMCPLNAECDSPPWVFKLKTYD 280
Query: 361 IIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD-IDNITLGNDCLFVEGAS 419
+ +KN +A G+ LG+++D G + D+PFT + + + D + GA+
Sbjct: 281 FL----DKNRLAVIVNHKGKQTLGVIED-GR-YTAFDLPFTSFVPTLAVQRDQVIFIGAA 334
Query: 420 GVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYY 479
P V D K K + +++ S P T+ K Y S PE IEFPT+ G+ AY +Y
Sbjct: 335 ---PDRFPAVVCYDSKNKRTE--ILYESVPLTID-KKYLSYPEAIEFPTD-EGKTAYGFY 387
Query: 480 YPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539
YPP N YQ EKPPL+V SHGGPTS LNL Q+WTS G+A +DVNYGGSTGYG
Sbjct: 388 YPPCNGDYQPPENEKPPLIVISHGGPTSSTSTALNLKNQFWTSCGFAVLDVNYGGSTGYG 447
Query: 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFK 599
+ +RERL GRWG+VDV DC + A +LV GKAD KRL I GGSAGG+T +AL F D F
Sbjct: 448 KAYRERLKGRWGVVDVADCVNGAKYLVKIGKADPKRLIIRGGSAGGFTVFSALIFYDVFA 507
Query: 600 AGASLYGVADLSMLRAETHKFESRYIDNLVGS---EKDYYE-KSPINFVDKFSCPIILFQ 655
AG+S +GVADL ++THKFES Y++ LVG +K Y+ +SPIN D+ SCPII Q
Sbjct: 508 AGSSYFGVADLESFASDTHKFESHYLETLVGKYPEQKSLYDARSPINHADRLSCPIIFLQ 567
Query: 656 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715
GLEDKVV P QA + +K+ GLP A V +E EQHGFR A+NIK LE ++ FF ++
Sbjct: 568 GLEDKVVLPAQAEVMIAKMKQKGLPYAYVVFEHEQHGFRNAKNIKTALESELYFFGKLF- 626
Query: 716 HFDVADEIIP 725
+F+ ++ P
Sbjct: 627 NFEPSESCRP 636
|
|
| DICTYBASE|DDB_G0288631 DDB_G0288631 "peptidase S9 family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 180/488 (36%), Positives = 263/488 (53%)
Query: 258 MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 316
+A+I W+ PNMPWD + + + + N ++ G++ ES P W+ + L+F
Sbjct: 220 LAYIYWNFPNMPWDNSNVCIKDLKTN-EIIN--ISNGYE----ESVLNPIWNEFDDCLYF 272
Query: 317 VTDRKNGFWNLHKW-IESN--NEVLAIYSLD-AEFSRPLWVFGINSY------EIIQSHG 366
++D NG+W +HK+ ++S ++V++ +D E P+W FG + Y ++I +
Sbjct: 273 ISDL-NGYWTIHKYDLKSKKRSQVISSELIDFKEIGEPMWYFGRSYYGFITPSKLIAALA 331
Query: 367 EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSV 426
+ L+ + N + I + F H S++ P +L LF+ G+S V S +
Sbjct: 332 DYGLVIFNIETNQVEQI-IRNQFSHVKSIVASP-------SLST-ALFIGGSSTVMFSPI 382
Query: 427 AKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG----QKAYAYYYPP 482
K+ + K +FK + + S S P IEF T +KA+AYYYPP
Sbjct: 383 -KLNYNSDSKKC-EFKQLLNVKGGESITDSMISKPIEIEFNTSSKSDNLIEKAFAYYYPP 440
Query: 483 S-NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541
+ + PPLLVKSHGGPT A +LN QYWTSRG+A +DVNY GS+G+G+
Sbjct: 441 TFKKDSSTTTTPPPPLLVKSHGGPTDRAYSVLNYEYQYWTSRGFAILDVNYRGSSGFGKR 500
Query: 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 601
+R+ L G WG+ D D + A +V G AD+ ++ I GGSAGG+ TL +L F D FK G
Sbjct: 501 YRKLLNGNWGLYDNADLVNAALHMVKMGLADKDKMFIDGGSAGGFATLCSLTFYDIFKGG 560
Query: 602 ASLYGVADLSMLRAETHKFESRYIDNLVGSEK-D---------YYEKSPINFVDKFSCPI 651
S YGVADL L ETHKFESRY D L+ K D Y ++SPIN +D PI
Sbjct: 561 CSYYGVADLETLFKETHKFESRYQDTLITEMKLDGPNGEWKRIYKDRSPINHLDLLKSPI 620
Query: 652 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711
LF GLED VVP +Q+ +Y LK G+P L + GE HGF +NI LE + +FF
Sbjct: 621 ALFHGLEDHVVPYNQSVLMYDHLKSKGIPSILELFPGEGHGFLSKDNIIKCLEYEYIFFC 680
Query: 712 RVVGHFDV 719
+++ +
Sbjct: 681 KLLNQLPI 688
|
|
| UNIPROTKB|Q88A85 PSPTO_0508 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 135/345 (39%), Positives = 195/345 (56%)
Query: 374 SYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDD 433
S+ Q+G LG+ G S + ++ ++ + + ++ AS V ++V ++ D
Sbjct: 278 SWSQDGSGVLGLCQADG-STEDFSVGYSRFRSLAVDEEFVYCIAASAVSTAAVLAISRAD 336
Query: 434 HKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEE 493
H + + SP + S P+ + +P+ G +AY Y+YP + +
Sbjct: 337 HSVHVL----AGGGSPLPAEL---ISRPQALCYPSG--GAEAYGYFYPAM------TGAQ 381
Query: 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 553
KPPL+V HGGPTS +L+ IQYWT RG+A D+NY GS+GYGR +R+ L WG+
Sbjct: 382 KPPLVVFIHGGPTSACYPVLDPRIQYWTHRGFAVADLNYRGSSGYGRAYRQGLHLTWGVA 441
Query: 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML 613
DV D C+ T L G DE++ I GGSAGGYTTL ALAF D F+AGASLYGV+D L
Sbjct: 442 DVQDACAVVTHLAERGLIDEQQAFIRGGSAGGYTTLCALAFEDVFRAGASLYGVSDPVAL 501
Query: 614 RAETHKFESRYIDNLVG---SEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQARK 669
THKFE Y+D L+G ++ + YE ++P+ + S P+I FQG D VV P+Q R
Sbjct: 502 AKATHKFEGDYLDWLIGDPVTDIERYEARTPLLHANLISVPVIFFQGELDAVVVPEQTRA 561
Query: 670 IYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714
+ KAL++NG+ Y E HGFRKA N LE++ F+ V+
Sbjct: 562 MLKALQDNGIKAEGHFYPDEHHGFRKAHNQADALEKEWRFYRDVL 606
|
|
| WB|WBGene00001057 dpf-4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 171/486 (35%), Positives = 254/486 (52%)
Query: 238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297
V+ G+DFYA+PR+ P G+++ W++W PNMPWD+ + + + + G+ V + D
Sbjct: 161 VIAHGADFYAYPRVSPDGKKLVWMQWSLPNMPWDETSIRMADL-KGGESSNEVTLK--DG 217
Query: 298 TIVE-SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFG 355
T + + +EP W EL V D N +WN++K N V + + E S PLW G
Sbjct: 218 TGKQINYSEPTWDGD-ELLTVNDSTN-WWNVYKSAAEPNSVEKNLNPIQREISYPLWQLG 275
Query: 356 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFV 415
+Y + + + N Y ++G + I G+++ + +D G+D LF
Sbjct: 276 FRNYVLNKKYLVMNADGILYVRSGDVTVEIPTP-GYTV----FGYLSLDQN--GSD-LFA 327
Query: 416 EGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSY-FSLPELIEFPTEVPGQK 474
+ SSV + L + K KV S D+ + + S PE EF + G
Sbjct: 328 IASGPKRASSVISIDLAN---KNFPLKV-HRESRDSSEIDALEISEPE--EFVFKSDGVD 381
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
Y+YPP N Y A PP+L+ HGGPT+ A+ L+L Q++TSRG A DVNY G
Sbjct: 382 VSGYFYPPKNCSYSAPAGTLPPVLLLGHGGPTAPAQNNLDLKKQFFTSRGIAVFDVNYRG 441
Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
STG+G EFR L G+ D +D + A LV GK D +++ ITG S+GGY L+ L
Sbjct: 442 STGFGTEFRRMLYKNCGVADRDDMLNGAKALVEQGKVDAEKVLITGSSSGGYLILSCLIS 501
Query: 595 -RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD----YYEKSPINFVDKFSC 649
++ KA S+YGVADL L +THK E Y + L+G + Y E+SPI +DK
Sbjct: 502 PKNIIKAAVSVYGVADLLALDEDTHKLERCYNEMLIGKYPEQASIYEERSPIYHIDKIRT 561
Query: 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709
PI G ED VVP Q+ +Y+ ++ +G+ AL+ ++GE HGFR + IK + E F
Sbjct: 562 PIAFLHGREDTVVPMSQSITMYEKIRASGVTTALMLFDGEGHGFRNGQVIKESTEATFYF 621
Query: 710 FARVVG 715
+ VG
Sbjct: 622 LMKAVG 627
|
|
| TIGR_CMR|SO_1686 SO_1686 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 152/433 (35%), Positives = 235/433 (54%)
Query: 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 361
S +P + G+L+ V+D N +WN+++ + + + + S +AEF+ P W G ++Y
Sbjct: 256 SVAQPLFGPDGKLYVVSDISN-WWNIYR-VTPSYTLEPVLSKNAEFAVPDWRLGNHNYAF 313
Query: 362 IQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGV 421
LIA SY + R+ L + L I F +I + G D ++ GA
Sbjct: 314 ---ENATTLIA-SYVEGNRAALLRIHLDSELTESLAIDFAEITQVVKGEDGVYFVGAKAT 369
Query: 422 EPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYP 481
+ +V +L V++ + L +Y S I F T Q+AY Y+Y
Sbjct: 370 PEKGIYRVVGRGTEL-------VYAPALANLN-PNYVSRAINIAFATG-KDQQAYGYFYG 420
Query: 482 PSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541
P NP Y + +PPL+V HGGPTS A IQ+WTSRG+A +D+N+ GS+G+GR
Sbjct: 421 PVNPKYVPPHDTRPPLIVMLHGGPTSRASLAYRSEIQFWTSRGFAVLDLNFRGSSGFGRA 480
Query: 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 601
+R+ L G+WG DV D + A +LV G D +L I G SAGG T +++LAF + F+AG
Sbjct: 481 YRQSLYGKWGESDVEDAVNAAKYLVAKGWVDANKLAIRGISAGGLTVMSSLAFYNVFQAG 540
Query: 602 ASLYGVADLSMLRAETHKFESRYIDNLVGSEKD----YYEKSPINFVDKFSCPIILFQGL 657
S G++D+ L THKFES Y+D L+G + Y E SP+N +D + P+++FQ L
Sbjct: 541 VSYEGISDVEQLAKSTHKFESGYLDQLIGPYPENTDRYRELSPLNHLDGLNEPLLIFQSL 600
Query: 658 EDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 717
+K+VP Q+R+IY ALK G+P A ++Y + R E+ LE ++ F+ +V F
Sbjct: 601 RNKIVPTSQSRQIYDALKAKGVPTAYIDYGDDSDEGRTPEHKAAGLETELAFYGQVF-KF 659
Query: 718 DVADEIIPIKIDN 730
A ++ P+ +DN
Sbjct: 660 TPAGKLPPLILDN 672
|
|
| TIGR_CMR|SO_A0048 SO_A0048 "periplasmic prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 79/234 (33%), Positives = 121/234 (51%)
Query: 491 PEEKP---PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 547
P++K P ++ HGGP + + +Q ++G+A V VN+ GSTGYG+ F E
Sbjct: 407 PKDKKTNLPTVILPHGGPHARDYWGFDPLVQMLANQGFAVVQVNFRGSTGYGKNFEEAGY 466
Query: 548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL-AALAFRDTFKAGASLYG 606
G+WG +D + + G ADE R+CI G S GGY+ L +A + DTFK G
Sbjct: 467 GKWGTKIQDDIMLATQYAIQQGIADENRMCILGISFGGYSALQSATRYPDTFKCAIGYAG 526
Query: 607 VADLSMLRAETH----KFESRYIDNLVGSEKDYYE-KSPINFVDKFSCPIILFQGLEDKV 661
V DL ML E + Y+D +G++K + +SP++FVD +++ G EDK
Sbjct: 527 VYDLEMLYNEGDVKDTSWGDAYLDKTLGTDKAALKSQSPVHFVDMLKASVLIIHGEEDKR 586
Query: 662 VPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715
+ A + KAL + +P + + E HGF K ENI ++ + F R +G
Sbjct: 587 ASIEHANALMKALDKANIPYEKLIKDKEGHGFYKQENIGEANKKIVDFLNRKIG 640
|
|
| TIGR_CMR|SO_4618 SO_4618 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 9.6e-23, P = 9.6e-23
Identities = 64/199 (32%), Positives = 104/199 (52%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P ++ HGGP S + Q++ +RG+A +N+ GS GYG EF + L WG+
Sbjct: 420 PTIIFPHGGPISYDSNDFDYWAQFFANRGYAVFRMNFRGSAGYGYEFMKAGLKSWGLEMQ 479
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
ND +L+ G +D +R+CI G S GGY L A D ++ S+ GV D++ L
Sbjct: 480 NDVEDGTRYLINQGISDPQRICIVGASYGGYAALMGAAMTPDLYRCAVSVAGVTDVANLV 539
Query: 615 AETHKFES-RYIDNLVGSEKDY-YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYK 672
+ +F + + +G + + YE+SPI+ DK + P++L G +D+VV +R+++
Sbjct: 540 RSSRRFTNYEVVKEQIGDDFNVLYERSPISKADKITIPVLLLHGDKDRVVKVQHSREMFD 599
Query: 673 ALKENGLPVALVEYEGEQH 691
LK V +E E H
Sbjct: 600 ELKSRKKNVEYIELENGGH 618
|
|
| TIGR_CMR|SO_4252 SO_4252 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 76/238 (31%), Positives = 112/238 (47%)
Query: 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS--EARGILNLSIQYWT 521
I F T GQK + Y P Y + PL+V HGGP + G + Q
Sbjct: 409 ISF-TNRDGQKIHGYLTLP----Y-GKEAKNLPLVVNPHGGPHGIRDWWGF-DPQNQLLA 461
Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
G A + VN+ GS GYG F + +WG +D +++G G D++R+CI GG
Sbjct: 462 QNGMAVLQVNFRGSGGYGERFEQAGYQKWGSDIQHDIIDATQYVIGQGFVDKERICIAGG 521
Query: 582 SAGGYTTL-AALAFRDTFKAGASLYGVADLSMLRAETHKFESR----YIDNLVGSEKDYY 636
S GGY+ L +A+ D FK GV DL ++ E +R Y+ +++G +K
Sbjct: 522 SFGGYSALQSAVLAPDMFKCAVGFAGVYDLELMFDEGDVARTRSGTSYLKDVLGQDKATL 581
Query: 637 EK-SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
+ SP V K ++L G ED+ P +Q + KALK + P + + E HGF
Sbjct: 582 KAMSPSENVAKLKANLLLVHGGEDERAPIEQLESLEKALKNHNYPYQKLVMDNEGHGF 639
|
|
| WB|WBGene00001059 dpf-6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 81/265 (30%), Positives = 130/265 (49%)
Query: 450 DTLKYKSYFSLPELIEF--PTEVP-GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT 506
D + ++Y SLP ++VP G + YA + + A P++ ++V HGGP
Sbjct: 389 DEMTIQAYLSLPPQAPLLKSSQVPDGDRPYA-----NLGMIPAVPQK---MIVLVHGGP- 439
Query: 507 SEARGILNLS-IQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF 564
+AR S + W T+RG++ + VN+ GSTG+G+ G WG D F
Sbjct: 440 -KARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHFDILDAVEF 498
Query: 565 LVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADL-SMLRAETHKFES 622
V G A+ + + GGS GGY TL AL F TF G + G ++L S+++A +
Sbjct: 499 AVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQAIPPYWLG 558
Query: 623 RYID--NLVGSE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673
D +VG++ + +SP+ F D+ + PI++ QG D V ++ + A
Sbjct: 559 FRKDLIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGANDPRVKQAESDQFVAA 618
Query: 674 LKENGLPVALVEYEGEQHGFRKAEN 698
L++ +PV + Y E HG RK +N
Sbjct: 619 LEKKHIPVTYLLYPDEGHGVRKPQN 643
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00014757001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (675 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 732 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 1e-69 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 9e-49 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 9e-10 | |
| COG0657 | 312 | COG0657, Aes, Esterase/lipase [Lipid metabolism] | 1e-08 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 3e-07 | |
| pfam05448 | 319 | pfam05448, AXE1, Acetyl xylan esterase (AXE1) | 8e-07 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 2e-06 | |
| COG1073 | 299 | COG1073, COG1073, Hydrolases of the alpha/beta sup | 9e-06 | |
| PRK10566 | 249 | PRK10566, PRK10566, esterase; Provisional | 2e-05 | |
| pfam07859 | 207 | pfam07859, Abhydrolase_3, alpha/beta hydrolase fol | 3e-05 | |
| pfam01738 | 215 | pfam01738, DLH, Dienelactone hydrolase family | 1e-04 | |
| COG4099 | 387 | COG4099, COG4099, Predicted peptidase [General fun | 5e-04 | |
| COG3458 | 321 | COG3458, COG3458, Acetyl esterase (deacetylase) [S | 0.001 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 0.003 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 1e-69
Identities = 124/489 (25%), Positives = 193/489 (39%), Gaps = 33/489 (6%)
Query: 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG 294
+ L G+ D G +A I PW I NG++
Sbjct: 159 KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPW--VTNLYVLIEGNGELESLT-PGE 215
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
+ + + K + + + +I L + E L
Sbjct: 216 GSISKLAFDADGKS-----IALLGTESDRGLAEGDFI------LLLDGELGEVDGDLSSG 264
Query: 355 G--INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDC 412
++ + L+ + G S L +DD G + L + +
Sbjct: 265 DDTRGAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRK 324
Query: 413 LFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG 472
L + +S EP + + + +SS ++ K + PE + + + G
Sbjct: 325 LALAYSSPTEPPEIYLYDRGE--------EAKLTSSNNSGLKKVKLAEPEPVTYKSN-DG 375
Query: 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY 532
+ + + Y P P +K PL+V HGGP+++ N IQ S G+A + NY
Sbjct: 376 ETIHGWLYKPPGF----DPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNY 431
Query: 533 GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592
GSTGYGREF + + G WG VD+ D + LV D +R+ ITGGS GGY TL A
Sbjct: 432 RGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAA 491
Query: 593 AFRDTFKAGASLY-GVADLSMLRAETHKFESRYIDNLVGSEKD---YYEKSPINFVDKFS 648
FKA ++ GV L T +N G +D Y ++SPI + D
Sbjct: 492 TKTPRFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIFYADNIK 551
Query: 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 708
P++L G ED VP +QA ++ ALK G PV LV + E HGF + EN L++ +
Sbjct: 552 TPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILD 611
Query: 709 FFARVVGHF 717
+F R +
Sbjct: 612 WFKRHLKQR 620
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 9e-49
Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 5/204 (2%)
Query: 517 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576
+Q RG+ N GS GYGR + + G G + +D + A +L+ G D RL
Sbjct: 7 LQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYVDPDRL 66
Query: 577 CITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLV-GSEKD 634
I GGS GGY T AAL R D FKA ++ V D ++T F RY++ ++
Sbjct: 67 AIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDNEE 126
Query: 635 YYEK-SPINFVD--KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691
Y SP + D K P++L GL D VPP +A K+ AL+ G V L+ + E H
Sbjct: 127 GYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLVAALQAKGKNVLLLIFPDEGH 186
Query: 692 GFRKAENIKFTLEQQMVFFARVVG 715
G K N + +++ F +V+G
Sbjct: 187 GGGKPRNKREEYARELAFLLKVLG 210
|
Length = 212 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 9e-10
Identities = 46/221 (20%), Positives = 70/221 (31%), Gaps = 44/221 (19%)
Query: 485 PIYQASPEEK--PPLLVKSHG--GPTSEARGILNLSIQYWTSRGWAFVDVNY----GGST 536
P Y A P P ++ H G R + + G+ + + G T
Sbjct: 15 PAYLARPAGAGGFPGVIVLHEIFGLNPHIRDV----ARRLAKAGYVVLAPDLYGRQGDPT 70
Query: 537 GYGREFRERLLGRWGIVDVNDCCS----CATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592
E E G VD + + +L + D KR+ + G GG L A
Sbjct: 71 DIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAA 130
Query: 593 AFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPII 652
KA + YG ++ +T K P++
Sbjct: 131 TRAPEVKAAVAFYG----GLIADDTA------------------------DAPKIKVPVL 162
Query: 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
L ED +P + AL++ G+ V L Y G HGF
Sbjct: 163 LHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203
|
Length = 236 |
| >gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 55/259 (21%), Positives = 88/259 (33%), Gaps = 49/259 (18%)
Query: 467 PTEVPGQKAYAYYYPPSNPIYQASPEEKP----PLLVKSHGG-----PTSEARGILNLSI 517
P P A A P+ P+ K P+++ HGG ++
Sbjct: 47 PATSPEDVALAGPSGDGVPVRVYRPDRKAAATAPVVLYLHGGGWVLGSLRTHDALVA--- 103
Query: 518 QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGK---ADE 573
+ + G V V+Y RL + D + +L + D
Sbjct: 104 RLAAAAGAVVVSVDY------------RLAPEHPFPAALEDAYAAYRWLRANAAELGIDP 151
Query: 574 KRLCITGGSAGGY-TTLAALAFRDTF----KAGASLYGVADLSMLRAETHKFE------- 621
R+ + G SAGG+ ALA RD A + + DL+ A +
Sbjct: 152 SRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGYGEADLLDA 211
Query: 622 ----SRYIDNLVGSEKDYY--EKSPINFVDKFSC-PIILFQGLEDKVVPPDQARKIYKAL 674
+ + D +G+ D E SP+ D P ++ D + D+ + L
Sbjct: 212 AAILAWFADLYLGAAPDREDPEASPLASDDLSGLPPTLIQTAEFDPLR--DEGEAYAERL 269
Query: 675 KENGLPVALVEYEGEQHGF 693
+ G+PV L Y G HGF
Sbjct: 270 RAAGVPVELRVYPGMIHGF 288
|
Length = 312 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 63/220 (28%), Positives = 93/220 (42%), Gaps = 20/220 (9%)
Query: 486 IYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544
+ + + +++ P L+ ++GG S S + W RG FV N G +G E+ +
Sbjct: 412 VRKGAKKDENPTLLYAYGGFNISLTPRFSG-SRKLWLERGGVFVLANIRGGGEFGPEWHQ 470
Query: 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGAS 603
+ +D + A L+ G ++L I GGS GG AAL R + F GA+
Sbjct: 471 AGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELF--GAA 528
Query: 604 LYGVADLSMLRAETHKFE--SRYIDNLVGSEKDY------YEKSPINFVD---KFSCPII 652
+ V L MLR H S +I G+ D SP + + K+ P +
Sbjct: 529 VCEVPLLDMLR--YHLLTAGSSWIAEY-GNPDDPEDRAFLLAYSPYHNLKPGQKYP-PTL 584
Query: 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
+ L D V P ARK L+E G PV L E HG
Sbjct: 585 ITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHG 624
|
Length = 648 |
| >gnl|CDD|203252 pfam05448, AXE1, Acetyl xylan esterase (AXE1) | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 64/309 (20%), Positives = 105/309 (33%), Gaps = 62/309 (20%)
Query: 440 DFKVVWSSSPDTLKYKSYFSL-PELIEFPTEVPGQKAYAYYYPPSN--PIYQ-----ASP 491
DF W TL+ L PEL ++P + Y + I
Sbjct: 22 DFDEFWDR---TLEELRQVDLDPELEPADFQLPTVECYDLTFTGFGGARIKAWLVLPKHA 78
Query: 492 EEKPPLLVKSHG--GPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549
E K P LV+ HG G + L+ W + G+A ++ G G +
Sbjct: 79 EGKHPALVEFHGYNGGRGDWHDNLH-----WAAAGYAVFAMDVRGQGGGSEDPGGVTGPT 133
Query: 550 W------GIVDVN----------DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593
+ G++D D ++ + DE+R+ + G S GG LAA A
Sbjct: 134 YKGHITRGLLDGPDHYYYRRVFLDAVRAVEIVMSLPEVDEERIGVYGASQGGALALAAAA 193
Query: 594 FRDTFKAGASLYG-------VADLSMLRA---ETHKFESRYIDNLVGSEKDYYEK----S 639
K + Y +L + E ++ ++ D E++ +
Sbjct: 194 LSPRIKKVVADYPFLSDFKRAVELDLAEEPYDEIFRY-FKFFDPHHEREEEVFRTLSYID 252
Query: 640 PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL---KENGLPVALVEYEGEQH----G 692
N + P+++ GL D+V PP Y L KE + Y H G
Sbjct: 253 IKNLAHRIKGPVLMSVGLMDQVCPPSTVFAAYNHLTTEKE------IKVYPEYGHEGGPG 306
Query: 693 FRKAENIKF 701
F++ + KF
Sbjct: 307 FQEDQQYKF 315
|
This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan. Length = 319 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 38/188 (20%), Positives = 57/188 (30%), Gaps = 51/188 (27%)
Query: 501 SHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS 560
HG + L + SRG+ V V+Y G +G
Sbjct: 5 LHGA-GGDPEAYAPL-ARALASRGYNVVAVDYPG---HGASLGAPDAEAV---------- 49
Query: 561 CATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKF 620
+ D +R+ + G S GG L A KA L
Sbjct: 50 -----LADAPLDPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAAGDPPD--------- 95
Query: 621 ESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 680
++ + K + P+++ G D VVPP++A + AL P
Sbjct: 96 -------------------ALDDLAKLTVPVLIIHGTRDGVVPPEEAEALAAALPG---P 133
Query: 681 VALVEYEG 688
LV EG
Sbjct: 134 AELVVIEG 141
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|223999 COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 9e-06
Identities = 40/195 (20%), Positives = 61/195 (31%), Gaps = 16/195 (8%)
Query: 523 RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGS 582
+D +Y G R+L + + + A G + D R+ + G S
Sbjct: 115 LSEGVLDKDY---RLLGASLGPRILAGLSLGGPS---AGALLAWGPTRLDASRIVVWGES 168
Query: 583 AGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESR-YIDNLVGSEKDYYEKSPI 641
GG L L Y L +D L P
Sbjct: 169 LGGALALLLLGANPELARELIDY----LITPGGFAPLPAPEAPLDTLPLRAVLLLLLDPF 224
Query: 642 NFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIK 700
+ +K S P++L G D+VVP A +Y+A +E P L+ G H
Sbjct: 225 DDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPA 282
Query: 701 FT--LEQQMVFFARV 713
L++ F R
Sbjct: 283 VEQALDKLAEFLERH 297
|
Length = 299 |
| >gnl|CDD|182555 PRK10566, PRK10566, esterase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 572 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML-------RAETHKFESRY 624
+ RL + G S GG T L +A K ASL G + L +
Sbjct: 105 LDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFPPLIPETAAQQAE 164
Query: 625 IDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL 679
+N+V ++ + +++ + P++L+ GL D VVP ++ ++ +AL+E GL
Sbjct: 165 FNNIVAPLAEW---EVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGL 217
|
Length = 249 |
| >gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 571 ADEKRLCITGGSAGGYTTLA-ALAFRDT----FKAGASLYGVADLSMLRAETHKFESRYI 625
AD R+ + G SAGG A AL RD +Y DL +++ +
Sbjct: 68 ADPSRIAVAGDSAGGNLAAAVALRARDEGLPLPAGQVLIYPGLDLRTESESYNEYADGPL 127
Query: 626 DNLVGSEKDYYEK---SPINFVDKFSCPIIL--FQGLEDKVVPP------------DQAR 668
L + D++ + + D + P+ GL PP D+
Sbjct: 128 --LTRDDMDWFWRLYLPGADRDDPLASPLFAADLSGL-----PPALVVVAEFDPLRDEGE 180
Query: 669 KIYKALKENGLPVALVEYEGEQHGF 693
+ L+ G+ V LVEY G HGF
Sbjct: 181 AYAERLRAAGVEVELVEYPGMIHGF 205
|
This catalytic domain is found in a very wide range of enzymes. Length = 207 |
| >gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 29/130 (22%)
Query: 564 FLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESR 623
+L G D K++ + G GG LA R+ A S YG
Sbjct: 88 YLRGQPYVDTKKVGVVGFCLGGRLAFL-LAARNGVDAAVSFYGTGP-------------- 132
Query: 624 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 683
+ P++ PI+ G ED VP + + +AL+ + L
Sbjct: 133 --------------EPPLDEAPAIKAPILAHFGEEDPFVPAEARDLLEEALRAANVDHEL 178
Query: 684 VEYEGEQHGF 693
Y G H F
Sbjct: 179 HVYPGAGHAF 188
|
Length = 215 |
| >gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 41/149 (27%)
Query: 572 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 631
D R+ + G S GG+ T A F A A + G
Sbjct: 267 DRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVP-----------------------IAGG 303
Query: 632 EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ- 690
Y + PI +F +DKV+P +R +Y+ LK V +
Sbjct: 304 GDRVYLVRTLK-----KAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFLEGTT 358
Query: 691 --HG----------FRKAENIKFTLEQQM 707
G + AE I++ L+Q++
Sbjct: 359 VLEGVDHSGVWWATYNDAEAIEWLLKQRL 387
|
Length = 387 |
| >gnl|CDD|225989 COG3458, COG3458, Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 60/255 (23%), Positives = 85/255 (33%), Gaps = 52/255 (20%)
Query: 461 PELIEFPTEVPGQKAYAYYYPPSN--PIY-----QASPEEKPPLLVKSHG--GPTSEARG 511
P L +P + Y + I + K P +V+ HG G E
Sbjct: 42 PVLERSDFTLPRVEVYDVTFTGYGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGGEWHD 101
Query: 512 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW-------GIVD---------- 554
+L+ W G+A ++ G ++ + G GI+D
Sbjct: 102 MLH-----WAVAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGV 156
Query: 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML- 613
D L + DE+R+ +TGGS GG LAA A KA VAD L
Sbjct: 157 FLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKA-----VVADYPFLS 211
Query: 614 ---RAETHKFESRYIDNLVGSEKDYYEKSPI-----------NFVDKFSCPIILFQGLED 659
RA E Y D + K + K N + P+++ GL D
Sbjct: 212 DFPRAIELATEGPY-DEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMD 270
Query: 660 KVVPPDQARKIYKAL 674
V PP Y AL
Sbjct: 271 PVCPPSTQFAAYNAL 285
|
Length = 321 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 8/122 (6%)
Query: 570 KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV 629
+ + G S GG LAA A R AG L L L + + L
Sbjct: 61 ALGLGPVVLVGHSLGGAVALAAAARRPERVAGLVLISPP-LRDLEELLAADAAALLALLR 119
Query: 630 GSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689
+ + + + P+++ G +D +VPP+ AR++ +AL LV G
Sbjct: 120 A---ALLDADLREALARLTVPVLVIHGEDDPLVPPEAARRLAEALP----GAELVVLPGA 172
Query: 690 QH 691
H
Sbjct: 173 GH 174
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 732 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 100.0 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.97 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.96 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.95 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.89 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.87 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.87 | |
| PRK10566 | 249 | esterase; Provisional | 99.86 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.86 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.85 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.85 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.85 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.84 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.83 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.83 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.82 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.81 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.81 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.81 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.81 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.81 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.81 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.81 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.8 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.79 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.78 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.78 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.78 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.77 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.75 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.74 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.74 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.74 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.73 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.73 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.72 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.72 | |
| PLN02511 | 388 | hydrolase | 99.71 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.7 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.69 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.69 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.67 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.66 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.66 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.65 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.65 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.65 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.65 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.64 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.64 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.63 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.63 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.62 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.6 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.6 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.6 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.6 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.6 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.59 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.59 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.59 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.59 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.58 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.58 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.58 | |
| PLN00021 | 313 | chlorophyllase | 99.58 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.58 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.58 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.58 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.57 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.57 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.56 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.56 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.56 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.56 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.56 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.56 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.55 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.54 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.54 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.53 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.52 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.52 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.51 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.5 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.5 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.49 | |
| PLN02578 | 354 | hydrolase | 99.49 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.49 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.49 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.49 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.47 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.46 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.46 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.44 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.43 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.43 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.42 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.42 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.4 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.4 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.39 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.37 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.36 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.34 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.32 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.31 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.27 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.27 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.26 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.26 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.26 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.26 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 99.24 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.2 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 99.19 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.18 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 99.18 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 99.17 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 99.17 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.15 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.15 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.15 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 99.14 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.14 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.11 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 99.09 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.07 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.07 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.05 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.03 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.03 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 99.01 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.99 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.98 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.97 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.94 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.93 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 98.92 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.92 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.9 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.89 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.88 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.87 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.86 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.85 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.85 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.85 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.83 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.82 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.81 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.79 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.77 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.74 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.72 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.71 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.7 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.68 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.64 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.64 | |
| PRK10115 | 686 | protease 2; Provisional | 98.63 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.62 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.62 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.62 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.6 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.59 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.57 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.57 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.56 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.54 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 98.53 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 98.51 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.49 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.48 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.44 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 98.44 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.43 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 98.43 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.41 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 98.39 | |
| PTZ00421 | 493 | coronin; Provisional | 98.38 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 98.38 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.37 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.36 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.36 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.35 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.31 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.3 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.29 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 98.28 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.27 | |
| PTZ00420 | 568 | coronin; Provisional | 98.27 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 98.27 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 98.26 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.24 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.16 | |
| PTZ00421 | 493 | coronin; Provisional | 98.16 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 98.16 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 98.15 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.15 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.13 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.12 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.12 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.11 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 98.1 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.1 | |
| PTZ00420 | 568 | coronin; Provisional | 98.1 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.09 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 98.09 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.09 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.07 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 98.04 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 98.04 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.03 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.03 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.01 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.0 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 98.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 97.99 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.99 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.99 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.95 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 97.94 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 97.93 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.91 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.89 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 97.88 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.86 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.84 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.8 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.8 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.8 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.79 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.78 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.77 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.75 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.75 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.75 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.74 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.74 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.71 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.7 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.68 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.66 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.66 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.64 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.64 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.63 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.62 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.62 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.6 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.59 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.57 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.55 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.55 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.54 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.52 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.49 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.48 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.46 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.45 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 97.42 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.42 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 97.38 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.37 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.35 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.35 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.33 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 97.33 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.33 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 97.32 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.27 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.27 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.24 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.23 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.21 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 97.2 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.18 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.14 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.1 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.04 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.03 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 96.99 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.98 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 96.96 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.93 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 96.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.9 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 96.89 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 96.88 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.88 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.85 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.84 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.83 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.83 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.83 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 96.8 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 96.78 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.77 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 96.75 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 96.71 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.7 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 96.68 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.63 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.63 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 96.62 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.59 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.54 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 96.5 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 96.49 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 96.49 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.48 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 96.42 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.36 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 96.36 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 96.34 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 96.31 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.3 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 96.3 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.26 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.24 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 96.2 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 96.19 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.18 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.16 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.15 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 96.14 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.06 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.05 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.04 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 96.03 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 96.01 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 95.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 95.94 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.92 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 95.9 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 95.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 95.9 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 95.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 95.86 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 95.83 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 95.82 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 95.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 95.79 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 95.69 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 95.66 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.63 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 95.62 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 95.61 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 95.55 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 95.53 | |
| KOG2541 | 296 | consensus Palmitoyl protein thioesterase [Lipid tr | 95.52 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 95.48 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.47 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 95.45 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 95.43 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 95.41 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 95.34 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 95.34 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 95.26 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 95.26 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 95.2 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 95.17 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.17 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 95.14 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 95.13 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 95.01 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 94.99 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 94.93 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.85 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 94.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.82 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.81 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 94.8 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 94.8 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 94.79 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 94.75 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.73 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 94.7 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 94.65 | |
| PLN02209 | 437 | serine carboxypeptidase | 94.55 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 94.54 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 94.39 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 94.32 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.29 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 94.22 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 94.18 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 94.17 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 94.13 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 94.05 | |
| PLN02193 | 470 | nitrile-specifier protein | 94.04 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 94.04 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 93.82 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 93.81 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.73 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 93.52 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 93.49 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 93.46 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 93.31 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 93.3 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 93.29 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 93.16 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 93.15 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.14 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 93.02 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 92.89 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 92.86 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 92.86 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 92.79 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 92.75 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.74 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 92.69 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 92.62 | |
| COG3946 | 456 | VirJ Type IV secretory pathway, VirJ component [In | 92.61 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 92.6 | |
| KOG2521 | 350 | consensus Uncharacterized conserved protein [Funct | 92.58 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 92.52 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 92.5 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 92.26 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 92.26 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 92.18 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 92.03 | |
| COG4287 | 507 | PqaA PhoPQ-activated pathogenicity-related protein | 92.0 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 91.65 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 91.64 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 91.6 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 91.43 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 91.37 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 91.2 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 91.17 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 90.91 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 90.86 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 90.86 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 90.82 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 90.76 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 90.71 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 90.57 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 90.52 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 90.45 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 90.4 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.35 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 90.3 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 90.16 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 90.13 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 89.87 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 89.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 89.78 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.64 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 89.59 | |
| PLN02633 | 314 | palmitoyl protein thioesterase family protein | 89.46 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 89.27 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 89.23 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 89.13 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 89.08 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 89.05 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 88.92 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 88.79 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 88.74 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 88.61 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 88.57 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 88.32 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 88.18 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 88.11 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 88.11 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 88.02 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 87.86 | |
| PLN02606 | 306 | palmitoyl-protein thioesterase | 87.84 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 87.75 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 87.31 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 87.31 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 87.15 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 87.14 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 87.06 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.04 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 86.8 | |
| PLN02454 | 414 | triacylglycerol lipase | 86.71 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 86.59 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 86.52 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=419.30 Aligned_cols=576 Identities=25% Similarity=0.342 Sum_probs=404.3
Q ss_pred CHHHHhccCCccCceEEcC-CCcEEEEeec-CC--CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC--ceeEEE
Q 004735 80 TADVVSGASKRLGGTAVDG-HGRLIWLESR-PT--EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIF 153 (732)
Q Consensus 80 ~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~--~~~~~~ 153 (732)
+.+.+..- ..+..+..+| ++.++++... +. ...+..+|..+.. ..+.++ ...+. ..++++
T Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~---~~~~~~----------~~~~~~~~~~spd 70 (620)
T COG1506 5 DAEDLLAL-ARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGK---TVRLLT----------FGGGVSELRWSPD 70 (620)
T ss_pred CHHHHHhh-hcccCcccCCCCceeEEeeccccccccccccceEEEecc---cccccc----------cCCcccccccCCC
Confidence 33444433 4567788888 8888888763 11 1222333432211 111111 11111 223445
Q ss_pred CCEEEEEeCCC---CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccC----CC-----------
Q 004735 154 GDTVIFSNYKD---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR----QD----------- 215 (732)
Q Consensus 154 ~~~i~f~~~~~---~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~----~~----------- 215 (732)
+..++|..... .++|+++.+ + .++.. .....+..|+|+|+++++...... +.
T Consensus 71 g~~~~~~~~~~~~~~~l~l~~~~---g---~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (620)
T COG1506 71 GSVLAFVSTDGGRVAQLYLVDVG---G---LITKT----AFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVW 140 (620)
T ss_pred CCEEEEEeccCCCcceEEEEecC---C---ceeee----ecccccceeCCCCCeEEEEecccccccCCceeeeeccccee
Confidence 55677776222 378888865 2 12221 223366789999999888321110 10
Q ss_pred --CC-CceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe
Q 004735 216 --AL-NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV 292 (732)
Q Consensus 216 --~~-~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~ 292 (732)
.. ....++|++|..+ . ...+..+......+++++|++.++.+.......||. ...++.... ++.+ ..+
T Consensus 141 ~~~~g~~~~~l~~~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~---~~~ 211 (620)
T COG1506 141 FDGRGGERSDLYVVDIES-K---LIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWV-TNLYVLIEG-NGEL---ESL 211 (620)
T ss_pred ecCCCCcccceEEEccCc-c---cccccCCCCceeeeeeCCCCceeEEeeeccccCCce-EeeEEEecC-CCce---EEE
Confidence 00 1246777777765 3 445555555566778888888888777555433442 223333333 5554 333
Q ss_pred cCCCCCccccCcCceeCCCCc-EEEEEeccC-Ce---eeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecC
Q 004735 293 AGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-GF---WNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHG 366 (732)
Q Consensus 293 ~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~-g~---~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~ 366 (732)
.... .+...+.|.+||+ +.+...... +. ..++.++.+.++..... ..+ . ....|.. ... .
T Consensus 212 ~~~~----~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~~~~---~~~-~---- 277 (620)
T COG1506 212 TPGE----GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGD-D-TRGAWAV---EGG-L---- 277 (620)
T ss_pred cCCC----ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCC-c-ccCcHHh---ccc-c----
Confidence 3333 5678899999999 777766522 21 23445553334333311 111 0 0111111 001 1
Q ss_pred CCCEEEEEEEE-CCEEEEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEe
Q 004735 367 EKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVW 445 (732)
Q Consensus 367 ~~~~l~~~s~~-~g~~~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~ 445 (732)
+++.+++.... .+...++.++..++....+..+...+..++.+++.+++..+++..|.++|+++. ++..+++
T Consensus 278 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~----- 350 (620)
T COG1506 278 DGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLT----- 350 (620)
T ss_pred CCCcEEEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEe-----
Confidence 56667777766 677778877766666666666667777776688899999999999999999987 3333322
Q ss_pred cCCCCCccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCC
Q 004735 446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW 525 (732)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~ 525 (732)
......+....+.++|.+++++. ||.++++|++.|.+.+ +.+++|+||++||||..+....+....+.|+.+||
T Consensus 351 -~~~~~~~~~~~~~~~e~~~~~~~-dG~~i~~~l~~P~~~~----~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~ 424 (620)
T COG1506 351 -SSNNSGLKKVKLAEPEPVTYKSN-DGETIHGWLYKPPGFD----PRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGY 424 (620)
T ss_pred -ecccccccccccCCceEEEEEcC-CCCEEEEEEecCCCCC----CCCCCCEEEEeCCCCccccccccchhhHHHhcCCe
Confidence 22234455677889999999998 9999999999998854 35568999999999998888889999999999999
Q ss_pred EEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeec
Q 004735 526 AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 605 (732)
Q Consensus 526 ~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~ 605 (732)
+|+.+|||||+|||++|.+....+||..+++|+.++++++.+.+.+|++||+|+|+|+||||+++++++.++|+++++..
T Consensus 425 ~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~f~a~~~~~ 504 (620)
T COG1506 425 AVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVA 504 (620)
T ss_pred EEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCchhheEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999666899999888
Q ss_pred CcCCHHHHHhh-cchhhhhhhhhhcC----ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCC
Q 004735 606 GVADLSMLRAE-THKFESRYIDNLVG----SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 680 (732)
Q Consensus 606 ~~~d~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (732)
+..++..+... +..+.. ....... +.+.|..+||+.++.++++|+|||||++|.+||.+|+++|+++|+.+|++
T Consensus 505 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~ 583 (620)
T COG1506 505 GGVDWLLYFGESTEGLRF-DPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKP 583 (620)
T ss_pred CcchhhhhccccchhhcC-CHHHhCCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCce
Confidence 87766554332 222211 1222222 45789999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 681 VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 681 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
+++++||+++|++..+++....++.+++||+++++.
T Consensus 584 ~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 584 VELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred EEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999973
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=405.39 Aligned_cols=572 Identities=12% Similarity=0.082 Sum_probs=393.0
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCC---CCCcccCCCC-CcccccccccCCceeEEECCEEEEEeCCCC--
Q 004735 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAG---DEPSDITPKE-YAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ-- 165 (732)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~l~~~~-~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~-- 165 (732)
+.|... |+.+||....++ .++.||++....+ +..+.|++.. .......+..++..++++++.|+|.....|
T Consensus 75 ~~p~~~-g~~~y~~~~~~g--~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E 151 (686)
T PRK10115 75 SAPYIK-NGYRYRHIYEPG--CEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRR 151 (686)
T ss_pred CCCEEE-CCEEEEEEEcCC--CccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcE
Confidence 345544 888888876554 3567776654211 1234444322 111111122233333444558888876655
Q ss_pred --eEEEEeCCCCCCC--ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc
Q 004735 166 --RLYKHSIDSKDSS--PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 166 --~l~~~d~~~~~~~--~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
+|+++|+.+ |. +..+... . ..+.|++||+.++|++.+... ....+||+.++.++..+ .+.|..
T Consensus 152 ~~~l~v~d~~t--g~~l~~~i~~~------~-~~~~w~~D~~~~~y~~~~~~~---~~~~~v~~h~lgt~~~~-d~lv~~ 218 (686)
T PRK10115 152 QYGIRFRNLET--GNWYPELLDNV------E-PSFVWANDSWTFYYVRKHPVT---LLPYQVWRHTIGTPASQ-DELVYE 218 (686)
T ss_pred EEEEEEEECCC--CCCCCccccCc------c-eEEEEeeCCCEEEEEEecCCC---CCCCEEEEEECCCChhH-CeEEEe
Confidence 799999987 65 3444332 2 347899999998888774321 11379999999987211 445544
Q ss_pred CC-C-ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec-CCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEE
Q 004735 242 GS-D-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (732)
Q Consensus 242 ~~-~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~ 318 (732)
+. . +......|.||+++....... ..+++++++.+ .+++. ..++.... .....+. ...+.+++.+
T Consensus 219 e~~~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~~--~~~~~~~~----~~~~~~~-~~~~~ly~~t 286 (686)
T PRK10115 219 EKDDTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAEP--FVFLPRRK----DHEYSLD-HYQHRFYLRS 286 (686)
T ss_pred eCCCCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCCc--eEEEECCC----CCEEEEE-eCCCEEEEEE
Confidence 32 2 222233355999887443222 24567777743 13443 22232221 1111111 1123388888
Q ss_pred eccCCeeeEEEEecc-CCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec
Q 004735 319 DRKNGFWNLHKWIES-NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~-~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
+.......|.++++. .++.+.|.++.. .+. ...+.+ .++.|++...++|...|++++++++..+.|+
T Consensus 287 n~~~~~~~l~~~~~~~~~~~~~l~~~~~-----~~~--i~~~~~-----~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 287 NRHGKNFGLYRTRVRDEQQWEELIPPRE-----NIM--LEGFTL-----FTDWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred cCCCCCceEEEecCCCcccCeEEECCCC-----CCE--EEEEEE-----ECCEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 765567789988887 455666664421 111 112233 3568999999999999999998877778776
Q ss_pred cC-CCceEEe--e--EeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCccCCCCCCCcEEEEeeccCCC
Q 004735 398 IP-FTDIDNI--T--LGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG 472 (732)
Q Consensus 398 ~~-~~~v~~~--~--~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g 472 (732)
.+ ...+..+ . .+++.+++..++...|.++|.+|+++++.+.|+. .....+++..+ .++++++++. ||
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~------~~~~~~~~~~~-~~e~v~~~s~-DG 426 (686)
T PRK10115 355 FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQ------TEVPGFDAANY-RSEHLWITAR-DG 426 (686)
T ss_pred CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEe------cCCCCcCcccc-EEEEEEEECC-CC
Confidence 32 2222222 1 3346799999999999999999999887655542 22233555545 7899999998 99
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCc
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 552 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~ 552 (732)
.+|++++..++... ..++.|+||++|||++......|....+.|+++||+|+.+|+||++|+|+.|.+.....++.
T Consensus 427 ~~Ip~~l~~~~~~~----~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~ 502 (686)
T PRK10115 427 VEVPVSLVYHRKHF----RKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKK 502 (686)
T ss_pred CEEEEEEEEECCCC----CCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCC
Confidence 99999655544311 14567999999999999989999999999999999999999999999999999998888888
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh-cchhhhhhhhhhcC
Q 004735 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-THKFESRYIDNLVG 630 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~-~~~~~~~~~~~~~~ 630 (732)
.+++|+.+++++|++++.+|++|++++|.|+||+++.+++. +|++|+|+|+..|++|+..+... ........ ...+|
T Consensus 503 ~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~-~~e~G 581 (686)
T PRK10115 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGE-FEEWG 581 (686)
T ss_pred CcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhH-HHHhC
Confidence 99999999999999999999999999999999999999998 89999999999999998876421 11111111 11223
Q ss_pred C---h---hhhhhcCccccCCCCCCC-EEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe---CCCCccCCCc-ccH
Q 004735 631 S---E---KDYYEKSPINFVDKFSCP-IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY---EGEQHGFRKA-ENI 699 (732)
Q Consensus 631 ~---~---~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~---~~~gH~~~~~-~~~ 699 (732)
+ + +.+..+||+.++++++.| +||+||.+|.+||+.++.+++++|++++++.+++++ +++||+.... ...
T Consensus 582 ~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~ 661 (686)
T PRK10115 582 NPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKS 661 (686)
T ss_pred CCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHH
Confidence 2 2 345679999999999999 677899999999999999999999999998888888 9999984321 222
Q ss_pred HHHHHHHHHHHHHHhCC
Q 004735 700 KFTLEQQMVFFARVVGH 716 (732)
Q Consensus 700 ~~~~~~~~~fl~~~l~~ 716 (732)
.+.....+.|+.+.++.
T Consensus 662 ~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 662 YEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 33444568888888763
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=332.15 Aligned_cols=495 Identities=19% Similarity=0.227 Sum_probs=363.5
Q ss_pred eeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC------------------------Ccee
Q 004735 193 YADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS------------------------DFYA 247 (732)
Q Consensus 193 ~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~------------------------~~~~ 247 (732)
..||+.+| |+.+|+|+.. .+||+.++.++. .++||... +.+.
T Consensus 202 ~~dP~lcP~~~~fia~i~~----------~dl~V~n~~~~~---ekrlt~~h~g~sn~~dd~~saGVasyv~QEEfdR~~ 268 (867)
T KOG2281|consen 202 RMDPKLCPADPDFIAYIKV----------CDLWVLNILTGE---EKRLTYIHNGSSNSKDDAISAGVASYVVQEEFDRFE 268 (867)
T ss_pred ccCcccCCCCccceeeeeh----------hhhhhhhhhhch---hhceeeeeccccccccchhhcCcchHHHHHHHHhhc
Confidence 36788888 5999999876 688999888887 66665210 1223
Q ss_pred ccccCCC----CCeEEEEeccCC-------------------------CCCCCccEEEEEEecC--CCceeeeEE---ec
Q 004735 248 FPRMDPR----GERMAWIEWHHP-------------------------NMPWDKAELWVGYISE--NGDVYKRVC---VA 293 (732)
Q Consensus 248 ~p~~SPD----G~~la~~~~~~~-------------------------~~~~~~~~l~v~d~~~--~g~~~~~~~---~~ 293 (732)
+--|||- -.+|+|...|++ +.++....|-++.+.. .|+...+.. .-
T Consensus 269 GyWW~p~s~~~~~rIlYeeVdesev~V~h~~s~~~~~~~~d~~rYPrtGt~Nak~~Lkmv~~~~~~~gk~~~v~~kdlv~ 348 (867)
T KOG2281|consen 269 GYWWSPPSGLKILRILYEEVDESEVEVIHVPSPVLGDRRVDSYRYPRTGTKNAKSTLKMVEFENDAEGKIYDVPLKDLVQ 348 (867)
T ss_pred ceeecCCCCCceEEEEeeecChhheEEEeccCcccCCCccccccCCcCCCCCceeeEEEEEEeeccccceeccchhhccc
Confidence 4567862 246777765543 1222334455554441 133322111 10
Q ss_pred CC--CCCccccCcCceeCCCCc-EEE-EEeccCCeeeEEEEeccCCeE---------------------EEecccccccC
Q 004735 294 GF--DPTIVESPTEPKWSSKGE-LFF-VTDRKNGFWNLHKWIESNNEV---------------------LAIYSLDAEFS 348 (732)
Q Consensus 294 ~~--~~~~~~~~~~~~wspDg~-l~~-~~~~~~g~~~l~~~d~~~g~~---------------------~~l~~~~~~~~ 348 (732)
.. .-.|+.++.+..|.|||+ ++. .-++++.+-+|..++++.... ..+.++ .
T Consensus 349 ~~~~~f~~~EYI~Ragwtpdgkyvwvq~LdR~Q~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~viyee----~ 424 (867)
T KOG2281|consen 349 PFHCLFEDVEYIARAGWTPDGKYVWVQVLDRSQQRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVIYEE----P 424 (867)
T ss_pred ccccccccceeeeeccccCCCcEEEEEEecCCcceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceEEec----C
Confidence 00 113446788899999999 433 334544555677777655322 111111 2
Q ss_pred CCceeecccceeeeeec--CCCCEEEEEEEECCEEEEEEEECCC----------------------CceEEeccCCCceE
Q 004735 349 RPLWVFGINSYEIIQSH--GEKNLIACSYRQNGRSYLGILDDFG----------------------HSLSLLDIPFTDID 404 (732)
Q Consensus 349 ~~~w~~~~~~~~~~~~~--~~~~~l~~~s~~~g~~~ly~~~~~~----------------------~~~~~lt~~~~~v~ 404 (732)
...|....+-+.+++.. +....++|++++.+..|||.+.... ++...||.+.|.|.
T Consensus 425 sd~winiHd~f~~~~~~~~e~~~~fi~asE~~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSgeweVl 504 (867)
T KOG2281|consen 425 SDGWINIHDIFHPLPQSTHEASYPFIWASEETGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGEWEVL 504 (867)
T ss_pred CCceEEhhhcccccccCCccceeeEEEecccccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccceeeh
Confidence 34677655556665422 2334589999999999999886433 23457788888765
Q ss_pred Ee----eEeCCEEEEEEeCCCCCcE--EEEEEcC-CCcceeeee---------------------------EEEecC---
Q 004735 405 NI----TLGNDCLFVEGASGVEPSS--VAKVTLD-DHKLKAVDF---------------------------KVVWSS--- 447 (732)
Q Consensus 405 ~~----~~~~~~~~~~~~~~~~~~~--ly~~dl~-~~~~~~lt~---------------------------~~~~~~--- 447 (732)
.. +++-.+++|+.+..++|.+ ||++.++ .|+..+||+ ...+..
T Consensus 505 ~r~Gi~VdE~~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~ 584 (867)
T KOG2281|consen 505 ARHGIWVDEVRKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSW 584 (867)
T ss_pred hhcCeeecccceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccC
Confidence 43 5667889999999999987 9999998 788989986 011100
Q ss_pred CCCC---------------ccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-
Q 004735 448 SPDT---------------LKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG- 511 (732)
Q Consensus 448 ~~~~---------------~~~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~- 511 (732)
.... ...+.++..+|.+.|++. .|..+.+.+|+|.+.. +++++|+|++++|||..+...
T Consensus 585 ~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~-tg~~lYgmiyKPhn~~----pgkkYptvl~VYGGP~VQlVnn 659 (867)
T KOG2281|consen 585 PENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSK-TGLTLYGMIYKPHNFQ----PGKKYPTVLNVYGGPGVQLVNN 659 (867)
T ss_pred CccCcccchhhHHHHHHhcCCCCCccCChhheeeecC-CCcEEEEEEEccccCC----CCCCCceEEEEcCCCceEEeec
Confidence 0000 011234556678889997 8999999999999844 588899999999999865433
Q ss_pred ccc----HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcC-CCCCCcEEEEEcChHHH
Q 004735 512 ILN----LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRLCITGGSAGGY 586 (732)
Q Consensus 512 ~~~----~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-~~d~~ri~i~G~S~GG~ 586 (732)
.|. .....|+++||.|+.+|.||+..+|..|...+...+|..+++|.++++++|++++ .+|.+||+|.|+|+|||
T Consensus 660 sfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGY 739 (867)
T KOG2281|consen 660 SFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGY 739 (867)
T ss_pred cccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccH
Confidence 222 3557789999999999999999999999999999999999999999999999985 89999999999999999
Q ss_pred HHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCC---CCEEEEEeCCCCcc
Q 004735 587 TTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS---CPIILFQGLEDKVV 662 (732)
Q Consensus 587 ~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~P~Lii~G~~D~~v 662 (732)
++++.++ +|+.|+++|+.+|+++|..+.. .+..+||+..-.+++.|..-|.+.++.++. ..+|++||--|..|
T Consensus 740 LSlm~L~~~P~IfrvAIAGapVT~W~~YDT---gYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliDENV 816 (867)
T KOG2281|consen 740 LSLMGLAQYPNIFRVAIAGAPVTDWRLYDT---GYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENV 816 (867)
T ss_pred HHHHHhhcCcceeeEEeccCcceeeeeecc---cchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccccch
Confidence 9999998 9999999999999999876533 234556665545678898888888888775 45999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 663 PPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 663 ~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+..+.-.+..+|.++|++.++++||++.|++..++..+..-.+++.|+++
T Consensus 817 HF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 817 HFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred hhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999989888888899999876
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=308.76 Aligned_cols=448 Identities=24% Similarity=0.290 Sum_probs=307.0
Q ss_pred cccCCCCCeEEEEeccCCC---------------------------CCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 249 PRMDPRGERMAWIEWHHPN---------------------------MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~---------------------------~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
..|||||.+++|...++.. .|.....|++.|.. +..... .......+.-+.
T Consensus 212 ~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~~~yp~~~~~~ypk~g~~np~v~l~v~~~~-~~~~~~-~~~~~~~~~~~~ 289 (755)
T KOG2100|consen 212 IWWSPDGDRLAYASFNDTKVETINLPGYTDDDQYPKSTNFHYPKAGAPNPAVSLFVVDLH-DPPRLG-IPPPTNQRSGEY 289 (755)
T ss_pred ceeCCCCceeEEEEecccccceEEeccccccccCcccceeecCCCCCCCCeEEEEEEeCC-Cceeec-cCCccccccCce
Confidence 4589999999988754331 12234456666644 222111 011111111114
Q ss_pred cCcCceeCCCCcEEEE-EeccCCeeeEEEEeccCCeEEEecccccccCCC-ceeeccc-ceeeeeecCCC-CEEEEEEEE
Q 004735 302 SPTEPKWSSKGELFFV-TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-LWVFGIN-SYEIIQSHGEK-NLIACSYRQ 377 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~-~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~-~w~~~~~-~~~~~~~~~~~-~~l~~~s~~ 377 (732)
++....|..+.++.++ .++.+...-+-..|.. +..+..... ..+ .|..... ...++. ++ ..+++.+..
T Consensus 290 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~~cd~~-~~~~~~~~~----~~~~~W~~~~~~~~~~~~---d~~~~~~~~~~~ 361 (755)
T KOG2100|consen 290 YVTNVKWDTTEKVLVVWTNREQNISVETLCDTP-GICRVVYEE----SSDGGWVEHQNVEPVFSS---DGSSYLKVDSVS 361 (755)
T ss_pred EEEEEEEecCccEEEEEEccCCCeeeeEEecCc-ccceeeEec----cccccccccccccceEee---cCCceeEEEeec
Confidence 5666778888774443 4442222222333333 222221111 122 4664333 122222 44 456666666
Q ss_pred CC-EEEEEEEECCCC-ceEEeccCCCceEEe--eEeCCEEEEEEeCCCCC--cEEEEEEcCCCcceeeee----------
Q 004735 378 NG-RSYLGILDDFGH-SLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEP--SSVAKVTLDDHKLKAVDF---------- 441 (732)
Q Consensus 378 ~g-~~~ly~~~~~~~-~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~--~~ly~~dl~~~~~~~lt~---------- 441 (732)
++ ..|+..+....+ ..+.+|.+.|.+..+ ...+...+++.+....+ .+||.+++.+...+.+|-
T Consensus 362 ~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~ 441 (755)
T KOG2100|consen 362 DGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVESLTCSLITGPCTYL 441 (755)
T ss_pred cCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEccccccccccccCCCCcceEE
Confidence 66 788888887777 778899999998766 22344445555444333 449999888765544442
Q ss_pred EEEecC--------CCCCccC-----C------------------------CCCCCcEEEEeeccCCCeEEEEEEEcCCC
Q 004735 442 KVVWSS--------SPDTLKY-----K------------------------SYFSLPELIEFPTEVPGQKAYAYYYPPSN 484 (732)
Q Consensus 442 ~~~~~~--------~~~~~~~-----~------------------------~~~~~~~~i~~~~~~~g~~i~~~~~~P~~ 484 (732)
...++. ...+..+ . ..+...+...+.. +|....+.+..|++
T Consensus 442 ~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~--~~~~~~~~~~lP~~ 519 (755)
T KOG2100|consen 442 SVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNEELKKTIENVALPIVEFGKIEI--DGITANAILILPPN 519 (755)
T ss_pred EEecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccChhhHHHhhcccCCcceeEEEEe--ccEEEEEEEecCCC
Confidence 000000 0000000 0 0111122222222 67788899999988
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCccC---CcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHH
Q 004735 485 PIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC 561 (732)
Q Consensus 485 ~~~~~~~~~~~P~vl~~HGg~~~~~~---~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~ 561 (732)
.. +.+++|+|+.+||||++... ....+....+..+|++|+.+|+||++++|..++.....++|..+++|+..+
T Consensus 520 ~~----~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~ 595 (755)
T KOG2100|consen 520 FD----PSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEA 595 (755)
T ss_pred CC----CCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHH
Confidence 44 46789999999999974333 233455556778899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CC-CcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcC
Q 004735 562 ATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKS 639 (732)
Q Consensus 562 i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p-~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 639 (732)
++++.+.+.+|.+||+|+|+|+|||+++.++. .+ +.|+|+++++|++|+. ++..++ ..+||.....+...|.+.+
T Consensus 596 ~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~~--terymg~p~~~~~~y~e~~ 672 (755)
T KOG2100|consen 596 VKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDSTY--TERYMGLPSENDKGYEESS 672 (755)
T ss_pred HHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eecccc--cHhhcCCCccccchhhhcc
Confidence 99999999999999999999999999999999 54 7899999999999998 544433 2344444444555699999
Q ss_pred ccccCCCCCCCE-EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 640 PINFVDKFSCPI-ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 640 p~~~~~~i~~P~-Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+...+..++.|. |++||+.|..|+.+++..++++|+.+|+++++++||+++|++...+.....+..+..||..++.
T Consensus 673 ~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~ 749 (755)
T KOG2100|consen 673 VSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFG 749 (755)
T ss_pred ccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcC
Confidence 999999999775 9999999999999999999999999999999999999999999888888999999999997776
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=281.54 Aligned_cols=560 Identities=14% Similarity=0.100 Sum_probs=384.5
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCC-CcccCCCCCcccccccc-cCCceeEE--ECCEEEEEeCCCC----eEEEE
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDE-PSDITPKEYAVRTTAQE-YGGGAFRI--FGDTVIFSNYKDQ----RLYKH 170 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~l~~~~~~~~~~~~~-~g~~~~~~--~~~~i~f~~~~~~----~l~~~ 170 (732)
+...|+... .+++++.++++.+..|+. .+.|++. +.+..-++ |..+.+++ +.+.++++.+..+ .|.+.
T Consensus 85 ~~~~Yy~r~--~~g~~y~~~~R~~~~g~~~eevlLD~--n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~k 160 (682)
T COG1770 85 GPYEYYSRT--EEGKEYPIYCRQPDEGGEGEEVLLDV--NKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFK 160 (682)
T ss_pred CCeeEEEEe--cCCCcceeEEeccCCCCCceeEeecc--hhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEE
Confidence 444555444 456888888875554444 3334433 33333223 23344444 4557777765443 57777
Q ss_pred eCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCccccEEccc--CCCce
Q 004735 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQEPKVLVS--GSDFY 246 (732)
Q Consensus 171 d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~~~~lt~--~~~~~ 246 (732)
|+.++.-.+..++. ....++|.+||+.++|++.+....+ ..||...+.+ .. -+.+-. +..|.
T Consensus 161 dL~tg~~~~d~i~~-------~~~~~~Wa~d~~~lfYt~~d~~~rp----~kv~~h~~gt~~~~---d~lvyeE~d~~f~ 226 (682)
T COG1770 161 DLATGEELPDEITN-------TSGSFAWAADGKTLFYTRLDENHRP----DKVWRHRLGTPGSS---DELVYEEKDDRFF 226 (682)
T ss_pred ecccccccchhhcc-------cccceEEecCCCeEEEEEEcCCCCc----ceEEEEecCCCCCc---ceEEEEcCCCcEE
Confidence 88772112233332 1366789999999999988765443 7899988887 33 344443 33455
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC--Cc-EEEEEeccCC
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK--GE-LFFVTDRKNG 323 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD--g~-l~~~~~~~~g 323 (732)
....-|-+.++|+....++ ..+++++++.+ +.+.....+.+... ....+.| |. +++.++. .|
T Consensus 227 ~~v~~s~s~~yi~i~~~~~-----~tsE~~ll~a~-~p~~~p~vv~pr~~--------g~eY~~eh~~d~f~i~sN~-~g 291 (682)
T COG1770 227 LSVGRSRSEAYIVISLGSH-----ITSEVRLLDAD-DPEAEPKVVLPREN--------GVEYSVEHGGDRFYILSNA-DG 291 (682)
T ss_pred EEeeeccCCceEEEEcCCC-----cceeEEEEecC-CCCCceEEEEEcCC--------CcEEeeeecCcEEEEEecC-CC
Confidence 5566677778876544333 46789999988 44433344444432 2222222 45 6777777 55
Q ss_pred -eeeEEEEec--cCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC
Q 004735 324 -FWNLHKWIE--SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (732)
Q Consensus 324 -~~~l~~~d~--~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~ 400 (732)
...|++... .....+.+++.+....-. .+.. -.++|++...+.|-..|++.+.++++.+.|..++
T Consensus 292 knf~l~~ap~~~~~~~w~~~I~h~~~~~l~-------~~~~-----f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~ 359 (682)
T COG1770 292 KNFKLVRAPVSADKSNWRELIPHREDVRLE-------GVDL-----FADHLVLLERQEGLPRVVVRDRKTGEERGIAFDD 359 (682)
T ss_pred cceEEEEccCCCChhcCeeeeccCCCceee-------eeee-----eccEEEEEecccCCceEEEEecCCCceeeEEecc
Confidence 667877655 223345555443222111 1111 3567888888889999999999888888777654
Q ss_pred CceEE-e----eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCccCCCCCCCcEEEEeeccCCCeEE
Q 004735 401 TDIDN-I----TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKA 475 (732)
Q Consensus 401 ~~v~~-~----~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i 475 (732)
..... + ..+...+.+.+++.++|..+|-+|+.+++.+.|.+..+.. .+++... ..+.++.+.. ||..|
T Consensus 360 ~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~-----g~dp~~Y-~s~riwa~a~-dgv~V 432 (682)
T COG1770 360 EAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPG-----GFDPEDY-VSRRIWATAD-DGVQV 432 (682)
T ss_pred hhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCC-----CCChhHe-EEEEEEEEcC-CCcEe
Confidence 32211 1 2456789999999999999999999999987776655533 2444444 2577888876 99999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccH
Q 004735 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555 (732)
Q Consensus 476 ~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~ 555 (732)
+..++.-++.. .+++.|++|+.+|..+......|+...-.|..+||+....+.||.+.-|+.|.+..........+
T Consensus 433 PVSLvyrkd~~----~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf 508 (682)
T COG1770 433 PVSLVYRKDTK----LDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTF 508 (682)
T ss_pred eEEEEEecccC----CCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccH
Confidence 99888776522 35778999999999888888899888888999999999999999999999999998877777889
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh-cchhhhhhhhhhcCC--
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-THKFESRYIDNLVGS-- 631 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~-- 631 (732)
.|+.+++++|.+++..++++|+++|.|+||+++..++. .|++|+++|+..|+.|....... ..++. ..-...+||
T Consensus 509 ~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT-~~E~~EWGNP~ 587 (682)
T COG1770 509 TDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLT-VTEWDEWGNPL 587 (682)
T ss_pred HHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCC-ccchhhhCCcC
Confidence 99999999999999999999999999999999999998 99999999999999997654332 22211 111122333
Q ss_pred -h---hhhhhcCccccCCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCC---CEEEEEeCCCCccC-CCcccHHHH
Q 004735 632 -E---KDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL---PVALVEYEGEQHGF-RKAENIKFT 702 (732)
Q Consensus 632 -~---~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~---~~~~~~~~~~gH~~-~~~~~~~~~ 702 (732)
+ +.++.+||+.++..-. +|+|++.|.+|+.|...+..++..+|++.+. ++-+.+=.++||+- +..-...+.
T Consensus 588 d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee 667 (682)
T COG1770 588 DPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEE 667 (682)
T ss_pred CHHHHHHHhhcCchhccccCCCCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCCCCchHHHHH
Confidence 2 3557889999988755 5699999999999999999999999998753 45666667899963 222222333
Q ss_pred HHHHHHHHHHHhC
Q 004735 703 LEQQMVFFARVVG 715 (732)
Q Consensus 703 ~~~~~~fl~~~l~ 715 (732)
......|+.+.++
T Consensus 668 ~A~eYaF~l~~~~ 680 (682)
T COG1770 668 IAFEYAFLLKLAG 680 (682)
T ss_pred HHHHHHHHhhhcc
Confidence 3445667666554
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=258.54 Aligned_cols=205 Identities=35% Similarity=0.578 Sum_probs=177.8
Q ss_pred cccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHH
Q 004735 512 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA 591 (732)
Q Consensus 512 ~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~ 591 (732)
.|+...+.|+++||+|+.+||||++|+|..+......+++..+++|+.++++++++++.+|++||+|+|+|+||++++++
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCcceEEEeecCcCCHHHHHhhcchhhh-hhhhhh--cCChhhhhhcCccccCCC--CCCCEEEEEeCCCCccChH
Q 004735 592 LA-FRDTFKAGASLYGVADLSMLRAETHKFES-RYIDNL--VGSEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPPD 665 (732)
Q Consensus 592 ~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~sp~~~~~~--i~~P~Lii~G~~D~~v~~~ 665 (732)
+. +|++|+++++.+|+.|+..+......+.. .+.... ..+++.|...+|+..+.+ +++|+|++||++|.+||+.
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~ 161 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPS 161 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTH
T ss_pred hcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHH
Confidence 99 99999999999999998766554322222 222211 125678888999999988 8899999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 666 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
++.+++++|++.|++++++++|+++|++..+++..+..+++++||+++|+.
T Consensus 162 ~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 162 QSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998888899999999999999983
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-25 Score=231.24 Aligned_cols=316 Identities=22% Similarity=0.270 Sum_probs=251.7
Q ss_pred EEEEEECCCCceEEeccCCC-ceE--EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCccCCCCC
Q 004735 382 YLGILDDFGHSLSLLDIPFT-DID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYF 458 (732)
Q Consensus 382 ~ly~~~~~~~~~~~lt~~~~-~v~--~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~~~~~~ 458 (732)
.|-+.+..+-..+.|..+.. .+. ....++..+++..++..+|+.+|+.++.+++++.+. . .+..++.+.+
T Consensus 320 ~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik------~-~p~~FDa~~~ 392 (648)
T COG1505 320 RLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIR------E-QPVQFDADNY 392 (648)
T ss_pred eEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCceehhhh------h-ccCCcCccCc
Confidence 45555665544555655432 222 224567788999999999999999999999875433 2 2344555444
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
..++....+. ||.+|++++.. ++.. .+ +.|++|+-+||......+.|......|.++|...+..|.||.+.|
T Consensus 393 -~veQ~~atSk-DGT~IPYFiv~-K~~~----~d-~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEf 464 (648)
T COG1505 393 -EVEQFFATSK-DGTRIPYFIVR-KGAK----KD-ENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEF 464 (648)
T ss_pred -eEEEEEEEcC-CCccccEEEEe-cCCc----CC-CCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCcc
Confidence 4677777887 99999999997 5532 23 679999999998888888998888999999999999999999999
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~ 617 (732)
|..|+.+......+..++|+.++++.|++++...+++++|.|.|.||.++..+++ +|++|.|+|+..|+.|+.++....
T Consensus 465 Gp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~ 544 (648)
T COG1505 465 GPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLT 544 (648)
T ss_pred CHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccc
Confidence 9999999988777778999999999999999999999999999999999998888 999999999999999988765432
Q ss_pred chhhhhhhhhhcCC------hhhhhhcCccccCCCC-C-CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004735 618 HKFESRYIDNLVGS------EKDYYEKSPINFVDKF-S-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689 (732)
Q Consensus 618 ~~~~~~~~~~~~~~------~~~~~~~sp~~~~~~i-~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (732)
.. ..|+.++ |+ .....++||+.+++.- + +|+||..+..|++|+|.|+++|+.+|++.+.++-+.+--++
T Consensus 545 aG--~sW~~EY-G~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~g 621 (648)
T COG1505 545 AG--SSWIAEY-GNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKG 621 (648)
T ss_pred cc--hhhHhhc-CCCCCHHHHHHHHhcCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCC
Confidence 21 1222222 22 2456789999998873 3 68999999999999999999999999999999888888899
Q ss_pred CccCCCcccH-HHHHHHHHHHHHHHhC
Q 004735 690 QHGFRKAENI-KFTLEQQMVFFARVVG 715 (732)
Q Consensus 690 gH~~~~~~~~-~~~~~~~~~fl~~~l~ 715 (732)
||+-..+... ......++.||.+.|+
T Consensus 622 GH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 622 GHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred cccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 9986544332 5566678889988874
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=226.07 Aligned_cols=487 Identities=18% Similarity=0.175 Sum_probs=317.1
Q ss_pred eceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC--CCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 194 ADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 194 ~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~--~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
...+|-- ||..|.|...+.... .+.||...+.+.+..++...+.. +.+...-..+-+| +..+.+....-.
T Consensus 185 ~y~~w~~~dg~~l~~~t~~~~~r----~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~vf~~~~kD~~-~~~i~si~~t~s-- 257 (712)
T KOG2237|consen 185 SYLAWAKQDGEDLLYGTEDENNR----PHKVYYHTLGTDQSEDVLLYEEKDEPKHVFISETKDSG-FYTINSISETCS-- 257 (712)
T ss_pred EeeeecccCCceeeeeeeccccC----cceEEEEecccCCCcceEEEecCCCCeEEEEEEEecCc-eEEEEEeeccCC--
Confidence 3344655 777777766655444 38899988876532112222222 2223333445444 444555444322
Q ss_pred CccEEEEEEecC--CCcee-eeEEecCCCCCccccCcCc-eeCCCCc-EEEEEeccCCeeeEEEEeccCC---eEEEecc
Q 004735 271 DKAELWVGYISE--NGDVY-KRVCVAGFDPTIVESPTEP-KWSSKGE-LFFVTDRKNGFWNLHKWIESNN---EVLAIYS 342 (732)
Q Consensus 271 ~~~~l~v~d~~~--~g~~~-~~~~~~~~~~~~~~~~~~~-~wspDg~-l~~~~~~~~g~~~l~~~d~~~g---~~~~l~~ 342 (732)
....+|.+|+.. +|-.. -+....+-+ -.+..- ....++. ++|.++.......+.+.+.... +.+.+..
T Consensus 258 ~~~~vf~~d~~~~~~gl~~~~~~~v~~v~----~f~eh~~fi~~~~t~~~~~tn~~~p~y~l~r~~~~~~~~~~W~~v~~ 333 (712)
T KOG2237|consen 258 PVNKVFLCDLSSPSDGLELLILPRVKGVD----CFVEHYDFITNEGTEFYFLTNKDAPNYYLLRIDVKEPEESKWETVFA 333 (712)
T ss_pred ccceEEEEecccccCCcchheeeccchhh----hhhhhhhheeccCcceeeeccCCCCceeEEeeeccCccccccceeec
Confidence 234688888762 12110 011111111 111111 3445667 7888877444556667665443 2223332
Q ss_pred cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE--EEECCCCceEEeccCCCceEEe--eEeCCEEEEEEe
Q 004735 343 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG--ILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGA 418 (732)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly--~~~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~ 418 (732)
+...+ -..|. .+. +++.+++....+- .+|- +.-+++..++.+..+.+++... ......+.|..+
T Consensus 334 e~~~~-vl~~~------~~~----~~~~ll~~~~~~l-~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~s 401 (712)
T KOG2237|consen 334 EHEKD-VLEDV------DMV----NDNLLLVCYMSDL-KHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQFS 401 (712)
T ss_pred ccchh-hhhhh------hhh----cCceEEEEEecCc-hhhccccccccCceeeeecCCCCcccccccCCCCceEEEEEe
Confidence 21111 11121 122 5566666655433 2222 2224566677787777776655 345677889999
Q ss_pred CCCCCcEEEEEEcCCCcceeeeeEEEecCCC--CCccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCC
Q 004735 419 SGVEPSSVAKVTLDDHKLKAVDFKVVWSSSP--DTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPP 496 (732)
Q Consensus 419 ~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P 496 (732)
++-.|..||.+|+..++.+ ..++.... .+.++.+.+ +.+++.+++. ||..|+.++..-+... ..+++|
T Consensus 402 S~l~P~~iy~yDl~~~~~e----~~vf~e~~~~lpg~~~s~y-~~~r~~~~Sk-DGt~VPM~Iv~kk~~k----~dg~~P 471 (712)
T KOG2237|consen 402 SFLTPGSIYDYDLANGKPE----PSVFREITVVLPGFDASDY-VVERIEVSSK-DGTKVPMFIVYKKDIK----LDGSKP 471 (712)
T ss_pred ccCCCCeEEEeeccCCCCC----CcceeeeccccCcccccce-EEEEEEEecC-CCCccceEEEEechhh----hcCCCc
Confidence 9999999999999998652 12233221 234444433 5788999998 9999999998854422 256789
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcE
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 576 (732)
++|+.||+.+-.....|......|..+|++....|.||.|++|..|+..+...-....++|++++++||++++.+.++|+
T Consensus 472 ~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL 551 (712)
T KOG2237|consen 472 LLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKL 551 (712)
T ss_pred eEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccce
Confidence 99999999888888888877777778999999999999999999999988776667789999999999999999999999
Q ss_pred EEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc--hhhhhhhhhhcCC---hhhhhhcCccccCCCCC--
Q 004735 577 CITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH--KFESRYIDNLVGS---EKDYYEKSPINFVDKFS-- 648 (732)
Q Consensus 577 ~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~sp~~~~~~i~-- 648 (732)
++.|.|.||.++..++. +|++|+|+++..|+.|+......+. .+...| .-+++ .+.+...+|+...++++
T Consensus 552 ~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~--ee~g~p~~~~~~~~i~~y~pv~~i~~q 629 (712)
T KOG2237|consen 552 AIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDY--EEWGNPEDFEDLIKISPYSPVDNIKKQ 629 (712)
T ss_pred eEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhh--cccCChhhhhhhheecccCccCCCchh
Confidence 99999999999998888 9999999999999999876543221 111111 11222 23444555555554443
Q ss_pred --CC-EEEEEeCCCCccChHHHHHHHHHHHhCC-------CCEEEEEeCCCCccCCCcc-cHHHHHHHHHHHHHHHhC
Q 004735 649 --CP-IILFQGLEDKVVPPDQARKIYKALKENG-------LPVALVEYEGEQHGFRKAE-NIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 649 --~P-~Lii~G~~D~~v~~~~~~~~~~~l~~~g-------~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~fl~~~l~ 715 (732)
-| +||..+.+|.+|++.++.++.++|+..- .++-+.+..++||+...+. ...+......+||.+.+.
T Consensus 630 ~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~ 707 (712)
T KOG2237|consen 630 VQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKMLN 707 (712)
T ss_pred ccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHhc
Confidence 34 8999999999999999999999998751 3578899999999764432 223344567888888886
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=224.34 Aligned_cols=249 Identities=16% Similarity=0.156 Sum_probs=181.8
Q ss_pred CCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCE--EEEEEeccCCCCCCceeEE
Q 004735 154 GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR--YVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 154 ~~~i~f~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~--l~~~~~~~~~~~~~~~~~l 223 (732)
+.+|+|+... ..+||++|.++ +.+++||.. ......|+|||||++ ++|++...+ ..+|
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG--~~~~~lt~~----~~~~~sP~wSPDG~~~~~~y~S~~~g------~~~I 213 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDG--QNLRPLTQE----HSLSITPTWMHIGSGFPYLYVSYKLG------VPKI 213 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCC--CCceEcccC----CCCcccceEccCCCceEEEEEEccCC------CceE
Confidence 6788888643 23899999998 889999986 233468999999987 455655432 3699
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEE--EecCCCceee-eEEecCCCCCcc
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG--YISENGDVYK-RVCVAGFDPTIV 300 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~--d~~~~g~~~~-~~~~~~~~~~~~ 300 (732)
|++++++|+ .++|+...+....|+|||||++|+|++... + ..++|++ +++ +|.... ..+..+..
T Consensus 214 ~~~~l~~g~---~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-g----~~di~~~~~~~~-~g~~g~~~~lt~~~~---- 280 (428)
T PRK01029 214 FLGSLENPA---GKKILALQGNQLMPTFSPRKKLLAFISDRY-G----NPDLFIQSFSLE-TGAIGKPRRLLNEAF---- 280 (428)
T ss_pred EEEECCCCC---ceEeecCCCCccceEECCCCCEEEEEECCC-C----CcceeEEEeecc-cCCCCcceEeecCCC----
Confidence 999999998 888987666666899999999999998332 2 3357775 444 322111 23333321
Q ss_pred ccCcCceeCCCCc-EEEEEeccCCeeeEEEEecc--CCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEE
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES--NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~--~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~ 377 (732)
.....|.|||||+ |+|.+++ .|..+||+++++ +++.++++........|.|++ ||+.|+|.+..
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP------------DG~~Laf~~~~ 347 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP------------DGKKIAFCSVI 347 (428)
T ss_pred CCcCCeEECCCCCEEEEEECC-CCCceEEEEECcccccceEEeccCCCCccceeECC------------CCCEEEEEEcC
Confidence 2346799999999 9999887 777899999875 355777876555556788987 89999999888
Q ss_pred CCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 378 NGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 378 ~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
.+..+||++++++++.++|+.....+... ..++++.+++.+...+...||++|+++++.++|+
T Consensus 348 ~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 348 KGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 88889999999999999998764443333 3444444444455556678999999999877665
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=216.49 Aligned_cols=245 Identities=14% Similarity=0.140 Sum_probs=184.4
Q ss_pred CEEEEEeCCC-----CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 155 DTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 155 ~~i~f~~~~~-----~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
.+|+|+.... .+||++|.++ ...++++.+ ......|+|||||++|+|+....+ ..+||+++++
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg--~~~~~lt~~----~~~~~~p~wSPDG~~la~~s~~~g------~~~i~i~dl~ 231 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESG------RSALVIQTLA 231 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCC--CCCEEeecC----CCceeeeEEcCCCCEEEEEEecCC------CcEEEEEECC
Confidence 5787876432 2899999997 778889876 345578999999999999875332 2689999999
Q ss_pred CCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 230 ~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
+|+ .++|+...+....|.|||||++|+|+.... ...+||++|++ +|+.+. +.... .....+.|+
T Consensus 232 ~G~---~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~-tg~~~~---lt~~~----~~~~~~~wS 295 (429)
T PRK03629 232 NGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLA-SGQIRQ---VTDGR----SNNTEPTWF 295 (429)
T ss_pred CCC---eEEccCCCCCcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECC-CCCEEE---ccCCC----CCcCceEEC
Confidence 998 888886666667899999999999986432 24569999998 776632 23332 445789999
Q ss_pred CCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 310 pDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|||+ |+|.+++ .+..+||++++++++.++++........+.|++ +|+.|++.+...+..+||++++
T Consensus 296 PDG~~I~f~s~~-~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------DG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 296 PDSQNLAYTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CCCCEEEEEeCC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEEccCCCceEEEEEC
Confidence 9999 9999987 677899999999998888875433344566776 8899999888778889999999
Q ss_pred CCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 389 FGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 389 ~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
++++.+.|+...........++++.+++.+.......|++++++++..++|+
T Consensus 363 ~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 363 ATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 9999999986532222223455555555555555667999999887765553
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-22 Score=216.94 Aligned_cols=245 Identities=15% Similarity=0.206 Sum_probs=185.0
Q ss_pred CCEEEEEeCCCC------eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 154 GDTVIFSNYKDQ------RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 154 ~~~i~f~~~~~~------~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
..+|+|+....+ +||++|.++ ..+++||.. ......|+|||||++|+|+....+ ..+||++|
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg--~~~~~lt~~----~~~v~~p~wSpDG~~lay~s~~~g------~~~i~~~d 232 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDG--ANVRYLTDG----SSLVLTPRFSPNRQEITYMSYANG------RPRVYLLD 232 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCC--CCcEEEecC----CCCeEeeEECCCCCEEEEEEecCC------CCEEEEEE
Confidence 458888865433 899999987 788999976 334577899999999999876432 26899999
Q ss_pred cCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
+.+++ .++++...+....|+|||||++|+|..... ...+||++|++ +|+.+. +.... .....+.
T Consensus 233 l~~g~---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~~~---Lt~~~----~~~~~~~ 296 (435)
T PRK05137 233 LETGQ---RELVGNFPGMTFAPRFSPDGRKVVMSLSQG-----GNTDIYTMDLR-SGTTTR---LTDSP----AIDTSPS 296 (435)
T ss_pred CCCCc---EEEeecCCCcccCcEECCCCCEEEEEEecC-----CCceEEEEECC-CCceEE---ccCCC----CccCcee
Confidence 99998 788886666667899999999999986332 24679999998 676532 33332 3456799
Q ss_pred eCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 308 wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
|+|||+ |+|.+++ .|..+||++|+++++.++|+........+.|++ +|+.|++.+...+..+|+++
T Consensus 297 ~spDG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp------------dG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 297 YSPDGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP------------RGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred EcCCCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcccCeEECC------------CCCEEEEEEcCCCceEEEEE
Confidence 999999 9999887 778899999999999999986554556678887 88999998877777899999
Q ss_pred ECCCCceEEeccCCCceEEe--eEeCCEEEEEEeCCCCC--cEEEEEEcCCCcceeee
Q 004735 387 DDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEP--SSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 387 ~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~--~~ly~~dl~~~~~~~lt 440 (732)
+++++..+.++.+. .+..+ +.+++.++|........ ..||++|+++++.++|+
T Consensus 364 d~~~~~~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 364 KPDGSGERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ECCCCceEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 99888888887653 23333 44455555555433332 57999999888765443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=211.08 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=172.0
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCE-EEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
.+||++|.++ ..+++++.. . ....|.|||||++ ++|+....+ ..+||++|+.+|+ .++|+...
T Consensus 169 ~~l~~~d~dg--~~~~~~~~~----~-~~~~p~wSpDG~~~i~y~s~~~~------~~~Iyv~dl~tg~---~~~lt~~~ 232 (419)
T PRK04043 169 SNIVLADYTL--TYQKVIVKG----G-LNIFPKWANKEQTAFYYTSYGER------KPTLYKYNLYTGK---KEKIASSQ 232 (419)
T ss_pred ceEEEECCCC--CceeEEccC----C-CeEeEEECCCCCcEEEEEEccCC------CCEEEEEECCCCc---EEEEecCC
Confidence 4899999997 678888876 3 3457899999997 455444321 2599999999999 89998766
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
+....|.|||||++|+|..... ...+||++|++ +|+.+++ +... .....+.|+|||+ |+|++++ .
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~-~g~~~~L---T~~~----~~d~~p~~SPDG~~I~F~Sdr-~ 298 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTN-TKTLTQI---TNYP----GIDVNGNFVEDDKRIVFVSDR-L 298 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccC-----CCcEEEEEECC-CCcEEEc---ccCC----CccCccEECCCCCEEEEEECC-C
Confidence 6667799999999999987432 35789999998 7766433 2222 2345789999999 9999998 7
Q ss_pred CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC------CEEEEEEEECCCCceEEe
Q 004735 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLSLL 396 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~------g~~~ly~~~~~~~~~~~l 396 (732)
|..+||++|+++|+.++++.... ..+.|++ +|+.|++++... +..+||+++++++..++|
T Consensus 299 g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SP------------DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L 364 (419)
T PRK04043 299 GYPNIFMKKLNSGSVEQVVFHGK--NNSSVST------------YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL 364 (419)
T ss_pred CCceEEEEECCCCCeEeCccCCC--cCceECC------------CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence 88899999999999988885321 1357776 899999888654 447899999999999999
Q ss_pred ccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 397 DIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 397 t~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
|..........+++++.+++.+.......|+.+++++....+|
T Consensus 365 T~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 365 TANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 9864332222344444444445556666799999988765444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=213.16 Aligned_cols=243 Identities=16% Similarity=0.172 Sum_probs=180.5
Q ss_pred EEEEEeCCC-----CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 156 TVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 156 ~i~f~~~~~-----~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
+|+|+.... .+||++|.++ ...++|+.. ......+.|||||++|+|+....+ ..+||++|+.+
T Consensus 184 riayv~~~~~~~~~~~l~i~d~dG--~~~~~l~~~----~~~~~~p~wSPDG~~La~~s~~~g------~~~L~~~dl~t 251 (448)
T PRK04792 184 RIAYVVVNDKDKYPYQLMIADYDG--YNEQMLLRS----PEPLMSPAWSPDGRKLAYVSFENR------KAEIFVQDIYT 251 (448)
T ss_pred EEEEEEeeCCCCCceEEEEEeCCC--CCceEeecC----CCcccCceECCCCCEEEEEEecCC------CcEEEEEECCC
Confidence 676664432 2799999987 678888876 345578999999999999876432 36899999999
Q ss_pred CCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 231 ~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
++ .++++........|.|||||++|+|+.... ...+||++|++ +|+.+.+ .... .....+.|+|
T Consensus 252 g~---~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~-tg~~~~l---t~~~----~~~~~p~wSp 315 (448)
T PRK04792 252 QV---REKVTSFPGINGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIA-TKALTRI---TRHR----AIDTEPSWHP 315 (448)
T ss_pred CC---eEEecCCCCCcCCeeECCCCCEEEEEEeCC-----CCeEEEEEECC-CCCeEEC---ccCC----CCccceEECC
Confidence 98 788886665566899999999999986333 34679999998 7766333 2222 3456799999
Q ss_pred CCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC
Q 004735 311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (732)
Q Consensus 311 Dg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~ 389 (732)
||+ |+|.+++ .+..+||++|+++++.++|+........+.|++ +++.|++.+...+..+||+++++
T Consensus 316 DG~~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp------------DG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 316 DGKSLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP------------DGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred CCCEEEEEECC-CCCceEEEEECCCCCEEEEecCCCCCcCeeECC------------CCCEEEEEEecCCceEEEEEECC
Confidence 999 9998887 777899999999999888874332334567776 88899998887888899999999
Q ss_pred CCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 390 GHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 390 ~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
+++.+.|+....+......++++.+++.+...+...||+++++++..++|
T Consensus 383 ~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 383 TGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred CCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 99999888654332222334444445555555667799999877765444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=210.75 Aligned_cols=263 Identities=14% Similarity=0.238 Sum_probs=187.4
Q ss_pred CceEEcCCCcEEEEeecCCC---CCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCE--EEEEeCCCC-
Q 004735 92 GGTAVDGHGRLIWLESRPTE---AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT--VIFSNYKDQ- 165 (732)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--i~f~~~~~~- 165 (732)
+.+... +.++.|+..+.+. ..+..||..+.++ +.++.++...... .-..|++++.+ ++|+...++
T Consensus 140 g~~g~~-~~~iayv~~~~~~~~~~~~~~l~~~d~dG-~~~~~lt~~~~~~-------~sP~wSPDG~~~~~~y~S~~~g~ 210 (428)
T PRK01029 140 GVPGIS-SGKIIFSLSTTNSDTELKQGELWSVDYDG-QNLRPLTQEHSLS-------ITPTWMHIGSGFPYLYVSYKLGV 210 (428)
T ss_pred CCCccc-cCEEEEEEeeCCcccccccceEEEEcCCC-CCceEcccCCCCc-------ccceEccCCCceEEEEEEccCCC
Confidence 456666 8889998765332 2356888887763 3677776543111 12346666655 556665543
Q ss_pred -eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE--EcCC---CCccccEEc
Q 004735 166 -RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI--ALNG---QNIQEPKVL 239 (732)
Q Consensus 166 -~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~--d~~~---~~~~~~~~l 239 (732)
+||++++++ ++.++|+...+ ....|+|||||++|+|+.+..+ ..+||+. ++++ ++ ++++
T Consensus 211 ~~I~~~~l~~--g~~~~lt~~~g----~~~~p~wSPDG~~Laf~s~~~g------~~di~~~~~~~~~g~~g~---~~~l 275 (428)
T PRK01029 211 PKIFLGSLEN--PAGKKILALQG----NQLMPTFSPRKKLLAFISDRYG------NPDLFIQSFSLETGAIGK---PRRL 275 (428)
T ss_pred ceEEEEECCC--CCceEeecCCC----CccceEECCCCCEEEEEECCCC------CcceeEEEeecccCCCCc---ceEe
Confidence 899999998 88899987532 2245899999999999876432 1356664 5554 44 6788
Q ss_pred ccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEE
Q 004735 240 VSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV 317 (732)
Q Consensus 240 t~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~ 317 (732)
+.+. .....|.|||||++|+|++.. .+ ..+||+++++..+.. .+.+.... .....|.|||||+ |+|.
T Consensus 276 t~~~~~~~~~p~wSPDG~~Laf~s~~-~g----~~~ly~~~~~~~g~~--~~~lt~~~----~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 276 LNEAFGTQGNPSFSPDGTRLVFVSNK-DG----RPRIYIMQIDPEGQS--PRLLTKKY----RNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred ecCCCCCcCCeEECCCCCEEEEEECC-CC----CceEEEEECcccccc--eEEeccCC----CCccceeECCCCCEEEEE
Confidence 8653 445689999999999999843 22 457999988622321 23344333 4457899999999 9988
Q ss_pred EeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec
Q 004735 318 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 318 ~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
+.. .|..+|+++|+++++.++|+........+.|++ |++.|+|++...+...||++++++++.++|+
T Consensus 345 ~~~-~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp------------DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 345 SVI-KGVRQICVYDLATGRDYQLTTSPENKESPSWAI------------DSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred EcC-CCCcEEEEEECCCCCeEEccCCCCCccceEECC------------CCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 877 677899999999999999986544556788886 8889999988888889999999999999998
Q ss_pred cCCCc
Q 004735 398 IPFTD 402 (732)
Q Consensus 398 ~~~~~ 402 (732)
.....
T Consensus 412 ~~~g~ 416 (428)
T PRK01029 412 IGSGE 416 (428)
T ss_pred cCCCc
Confidence 65443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=210.25 Aligned_cols=244 Identities=15% Similarity=0.209 Sum_probs=182.0
Q ss_pred CEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 155 DTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 155 ~~i~f~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
.+|+|+.... .+|+++|.++ +.+++++.. ......+.|||||++|+|+..+.. ..+||++++
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~----~~~~~~p~wSpDG~~la~~s~~~~------~~~l~~~~l 230 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDG--ARAVTLLQS----REPILSPRWSPDGKRIAYVSFEQK------RPRIFVQNL 230 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCC--CCceEEecC----CCceeeeeECCCCCEEEEEEcCCC------CCEEEEEEC
Confidence 4677765322 1699999987 778888765 344577899999999999876432 358999999
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
++++ .++++...+....|+|||||++|+|..... +..+||++|++ +|+.+. +.... .....+.|
T Consensus 231 ~~g~---~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~~~---lt~~~----~~~~~~~~ 294 (430)
T PRK00178 231 DTGR---REQITNFEGLNGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLA-SRQLSR---VTNHP----AIDTEPFW 294 (430)
T ss_pred CCCC---EEEccCCCCCcCCeEECCCCCEEEEEEccC-----CCceEEEEECC-CCCeEE---cccCC----CCcCCeEE
Confidence 9998 888886666666799999999999987433 24679999998 776533 33332 34567899
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
+|||+ |+|.+++ .|..+||++++.+++.++++........+.|++ +++.|++.+..++..+||+++
T Consensus 295 spDg~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------dg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 295 GKDGRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA------------DGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred CCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccceEECC------------CCCEEEEEEccCCceEEEEEE
Confidence 99999 9999887 778899999999999888874433334566776 889999998877778899999
Q ss_pred CCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 388 DFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 388 ~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
+++++.+.|+..........+++++.+++.+...+...||.++++++..++|
T Consensus 362 l~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 362 LQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred CCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 9999999998754333333444555666666566667799999987664443
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-22 Score=195.73 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=154.4
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCC-CCCChhh
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGYGREF 542 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~-~g~g~~~ 542 (732)
..+.+. +|..+.||+..|.+.. ..+.++||++||..... ..+...+.+|+++||+|+.+|+||+ +.++..+
T Consensus 12 ~~~~~~-dG~~L~Gwl~~P~~~~-----~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~ 83 (307)
T PRK13604 12 HVICLE-NGQSIRVWETLPKENS-----PKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTI 83 (307)
T ss_pred heEEcC-CCCEEEEEEEcCcccC-----CCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcc
Confidence 445666 8999999999997421 46679999999974432 3467789999999999999999876 4444443
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchh--
Q 004735 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKF-- 620 (732)
Q Consensus 543 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-- 620 (732)
.+... . ....|+.++++|+.++ +.++|+|+||||||.+++.++..+ .++++|+.+|+.++..+......+
T Consensus 84 ~~~t~-s---~g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~~-~v~~lI~~sp~~~l~d~l~~~~~~~~ 155 (307)
T PRK13604 84 DEFTM-S---IGKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINEI-DLSFLITAVGVVNLRDTLERALGYDY 155 (307)
T ss_pred ccCcc-c---ccHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcCC-CCCEEEEcCCcccHHHHHHHhhhccc
Confidence 32211 1 1278999999999886 346899999999999987666644 399999999999977554421111
Q ss_pred ---hh----h---hh------hhhcCCh---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCE
Q 004735 621 ---ES----R---YI------DNLVGSE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 681 (732)
Q Consensus 621 ---~~----~---~~------~~~~~~~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (732)
.. . +. ..++.+- ..+...+|+..+++++.|+|++||++|..||++++++++++++. .+.
T Consensus 156 ~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~k 233 (307)
T PRK13604 156 LSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQC 233 (307)
T ss_pred ccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCc
Confidence 00 0 00 0000000 01123455677888899999999999999999999999998764 366
Q ss_pred EEEEeCCCCccCCC
Q 004735 682 ALVEYEGEQHGFRK 695 (732)
Q Consensus 682 ~~~~~~~~gH~~~~ 695 (732)
++++++|+.|.+..
T Consensus 234 kl~~i~Ga~H~l~~ 247 (307)
T PRK13604 234 KLYSLIGSSHDLGE 247 (307)
T ss_pred EEEEeCCCccccCc
Confidence 99999999999864
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-21 Score=207.07 Aligned_cols=244 Identities=14% Similarity=0.114 Sum_probs=179.6
Q ss_pred CEEEEEeCCC--CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 155 DTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 155 ~~i~f~~~~~--~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
.+|+|+.... .+||++|.++ ..+++++.. ......++|||||++|+|+..... ..+||++|+++++
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG--~~~~~l~~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~I~~~dl~~g~ 231 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADG--QNAQSALSS----PEPIISPAWSPDGTKLAYVSFESK------KPVVYVHDLATGR 231 (427)
T ss_pred cEEEEEEccCCccEEEEECCCC--CCceEeccC----CCCcccceEcCCCCEEEEEEccCC------CcEEEEEECCCCC
Confidence 5788876443 3899999986 677888765 334578899999999999875322 2589999999998
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.++++...+....|.|||||++|+|....+ +..+||++|++ +++.+ .+.... .....+.|+|||
T Consensus 232 ---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~~---~lt~~~----~~~~~~~wSpDG 295 (427)
T PRK02889 232 ---RRVVANFKGSNSAPAWSPDGRTLAVALSRD-----GNSQIYTVNAD-GSGLR---RLTQSS----GIDTEPFFSPDG 295 (427)
T ss_pred ---EEEeecCCCCccceEECCCCCEEEEEEccC-----CCceEEEEECC-CCCcE---ECCCCC----CCCcCeEEcCCC
Confidence 788876556667899999999999976333 24679999987 66543 233332 344678999999
Q ss_pred c-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 313 ~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
+ |+|.+++ .|..+||.++.++++.++++........+.|++ +|+.|++.+...+..+||+++++++
T Consensus 296 ~~l~f~s~~-~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 296 RSIYFTSDR-GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP------------DGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CEEEEEecC-CCCcEEEEEECCCCceEEEecCCCCcCceEECC------------CCCEEEEEEccCCcEEEEEEECCCC
Confidence 9 9998887 678899999998888888874333334577776 8999999888777789999999999
Q ss_pred ceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 392 SLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 392 ~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
+.++++...........++++.+++.+...+...||.+++++...++|
T Consensus 363 ~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 363 QVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred CeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEe
Confidence 999998653322222444555555555556667799999876554333
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-21 Score=208.68 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=181.6
Q ss_pred CEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 155 DTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 155 ~~i~f~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
.+|+|+.... .+||++|.++ ..+++|+.. ......++|||||++|+|++.... ..+||++|+
T Consensus 168 ~~ia~v~~~~~~~~~~~~l~i~D~~g--~~~~~lt~~----~~~v~~p~wSpDg~~la~~s~~~~------~~~l~~~dl 235 (433)
T PRK04922 168 TRIAYVTVSGAGGAMRYALQVADSDG--YNPQTILRS----AEPILSPAWSPDGKKLAYVSFERG------RSAIYVQDL 235 (433)
T ss_pred ceEEEEEEeCCCCCceEEEEEECCCC--CCceEeecC----CCccccccCCCCCCEEEEEecCCC------CcEEEEEEC
Confidence 4677765321 2699999986 778899876 334578899999999999875432 368999999
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
++++ .++++...+....|+|||||++|+|....+ +..+||++|++ +|+.+. +.... .....+.|
T Consensus 236 ~~g~---~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~-~g~~~~---lt~~~----~~~~~~~~ 299 (433)
T PRK04922 236 ATGQ---RELVASFRGINGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLG-SRQLTR---LTNHF----GIDTEPTW 299 (433)
T ss_pred CCCC---EEEeccCCCCccCceECCCCCEEEEEEeCC-----CCceEEEEECC-CCCeEE---CccCC----CCccceEE
Confidence 9988 778876555566899999999999986433 24679999998 776533 23322 33457899
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
+|||+ |+|.+++ .|..+||.+++++++.++++........+.|++ +++.|++.+..++..+|++++
T Consensus 300 spDG~~l~f~sd~-~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~~~~~~~~~I~v~d 366 (433)
T PRK04922 300 APDGKSIYFTSDR-GGRPQIYRVAASGGSAERLTFQGNYNARASVSP------------DGKKIAMVHGSGGQYRIAVMD 366 (433)
T ss_pred CCCCCEEEEEECC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEECCCCceeEEEEE
Confidence 99999 9999887 777899999999998888874433334577776 889999987766778999999
Q ss_pred CCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 388 DFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 388 ~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
+++++.+.|+.+.........++++.+++.+.......||.++++++..++|+
T Consensus 367 ~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 367 LSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 99999999987644332224445555555555556678999999877655443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=199.76 Aligned_cols=252 Identities=10% Similarity=0.052 Sum_probs=181.1
Q ss_pred EEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCE-EEEEeCC--CCeEEEEe
Q 004735 95 AVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYK--DQRLYKHS 171 (732)
Q Consensus 95 ~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~-i~f~~~~--~~~l~~~d 171 (732)
.|. .+.+|++.... ..++.|+..+.++ ..++.++... . . -...|++++++ ++|+... ..+||++|
T Consensus 152 ~f~-~r~~~v~~~~~--~~~~~l~~~d~dg-~~~~~~~~~~--~--~----~~p~wSpDG~~~i~y~s~~~~~~~Iyv~d 219 (419)
T PRK04043 152 DWM-KRKVVFSKYTG--PKKSNIVLADYTL-TYQKVIVKGG--L--N----IFPKWANKEQTAFYYTSYGERKPTLYKYN 219 (419)
T ss_pred Cce-eeEEEEEEccC--CCcceEEEECCCC-CceeEEccCC--C--e----EeEEECCCCCcEEEEEEccCCCCEEEEEE
Confidence 455 56666665221 1356788887762 2344444321 0 0 02345666665 6766554 35899999
Q ss_pred CCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceecccc
Q 004735 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRM 251 (732)
Q Consensus 172 ~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~ 251 (732)
+.+ ++.++|+... .....+.|||||++|+|+....+ ..+||++++++++ .++||........|.|
T Consensus 220 l~t--g~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~ 284 (419)
T PRK04043 220 LYT--GKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKT---LTQITNYPGIDVNGNF 284 (419)
T ss_pred CCC--CcEEEEecCC----CcEEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCc---EEEcccCCCccCccEE
Confidence 998 8999998652 22245779999999999876432 3799999999998 8999987766678999
Q ss_pred CCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC-----Cee
Q 004735 252 DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-----GFW 325 (732)
Q Consensus 252 SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~-----g~~ 325 (732)
||||++|+|++. +. +..+||++|++ +|+.+++. ... .. .+.|||||+ |+|++.... +..
T Consensus 285 SPDG~~I~F~Sd-r~----g~~~Iy~~dl~-~g~~~rlt--~~g-----~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~ 349 (419)
T PRK04043 285 VEDDKRIVFVSD-RL----GYPNIFMKKLN-SGSVEQVV--FHG-----KN--NSSVSTYKNYIVYSSRETNNEFGKNTF 349 (419)
T ss_pred CCCCCEEEEEEC-CC----CCceEEEEECC-CCCeEeCc--cCC-----Cc--CceECCCCCEEEEEEcCCCcccCCCCc
Confidence 999999999984 33 34679999998 77764332 222 11 359999999 888876521 336
Q ss_pred eEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
+|+++|+++++.+.|+... ....|.|+| ||+.|+|.+...+...|+.+++++...+.|.....
T Consensus 350 ~I~v~d~~~g~~~~LT~~~-~~~~p~~SP------------DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 350 NLYLISTNSDYIRRLTANG-VNQFPRFSS------------DGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred EEEEEECCCCCeEECCCCC-CcCCeEECC------------CCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 8999999999999998653 334688887 89999999988888899999999887777765443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-20 Score=200.54 Aligned_cols=253 Identities=11% Similarity=0.075 Sum_probs=185.5
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCC--CCeEEEEeCCCCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK--DQRLYKHSIDSKD 176 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~--~~~l~~~d~~~~~ 176 (732)
.++++|+..+.++..++.||..+.+++ ..+.++.... ......|+++++.|+|.... ..+||++++.+
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg~-~~~~lt~~~~-------~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-- 232 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-- 232 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCCC-CCEEeecCCC-------ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 467888776544444678888876632 4455554320 11234566777789887643 34899999988
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
++.++|+... .....+.|||||++|+|+....+ ..+||++|+++++ .++++.+......|.|||||+
T Consensus 233 G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSPDG~ 299 (429)
T PRK03629 233 GAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQ 299 (429)
T ss_pred CCeEEccCCC----CCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCC---EEEccCCCCCcCceEECCCCC
Confidence 8888888652 22356899999999999865332 2579999999998 889987776677899999999
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
+|+|.+. +.+ ..+||++|++ +|+.+.+ .... .....+.|||||+ |+|.+.. .+..+|+.+|++++
T Consensus 300 ~I~f~s~-~~g----~~~Iy~~d~~-~g~~~~l---t~~~----~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g 365 (429)
T PRK03629 300 NLAYTSD-QAG----RPQVYKVNIN-GGAPQRI---TWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG 365 (429)
T ss_pred EEEEEeC-CCC----CceEEEEECC-CCCeEEe---ecCC----CCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCC
Confidence 9999983 322 3579999998 6765333 2222 3446799999999 8887766 66778999999999
Q ss_pred eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
+.+.|+.. .....|.|++ ||+.|++.+.+.+...||+++++++..+.|+....
T Consensus 366 ~~~~Lt~~-~~~~~p~~Sp------------DG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~ 418 (429)
T PRK03629 366 GVQVLTDT-FLDETPSIAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG 418 (429)
T ss_pred CeEEeCCC-CCCCCceECC------------CCCEEEEEEcCCCceEEEEEECCCCCeEECccCCC
Confidence 99888843 2334678886 89999999987777889999999888888875443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-20 Score=198.46 Aligned_cols=253 Identities=12% Similarity=0.119 Sum_probs=182.5
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~~ 176 (732)
..++.|+..+......+.|+..+.++ +..+.++..... .....|++++++|+|....+ .+||++|+.+
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG-~~~~~l~~~~~~-------~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-- 251 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDG-YNEQMLLRSPEP-------LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-- 251 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCC-CCceEeecCCCc-------ccCceECCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 45677766544333356777766552 244555443211 11235666777899986544 3799999998
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
++.++++...+ ....+.|||||++|+|+....+ ..+||++|+++++ .++++........|.|||||+
T Consensus 252 g~~~~lt~~~g----~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSpDG~ 318 (448)
T PRK04792 252 QVREKVTSFPG----INGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKA---LTRITRHRAIDTEPSWHPDGK 318 (448)
T ss_pred CCeEEecCCCC----CcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCC---eEECccCCCCccceEECCCCC
Confidence 78888886521 2246899999999988765432 3689999999998 889987666667899999999
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
+|+|.+... + ..+||++|++ +|+.+.++ ... .....+.|+|||+ |+|.+.. .+..+|+++|++++
T Consensus 319 ~I~f~s~~~-g----~~~Iy~~dl~-~g~~~~Lt--~~g-----~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g 384 (448)
T PRK04792 319 SLIFTSERG-G----KPQIYRVNLA-SGKVSRLT--FEG-----EQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG 384 (448)
T ss_pred EEEEEECCC-C----CceEEEEECC-CCCEEEEe--cCC-----CCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC
Confidence 999987332 2 4579999998 77764332 222 2335689999999 8887776 67789999999999
Q ss_pred eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
+.+.|+... ....|.|++ +++.|+|++..++...||+++.+++..+.++.+..
T Consensus 385 ~~~~lt~~~-~d~~ps~sp------------dG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g 437 (448)
T PRK04792 385 AMQVLTSTR-LDESPSVAP------------NGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQG 437 (448)
T ss_pred CeEEccCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCCCC
Confidence 988887543 234677876 89999999998888899999998888888876543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-20 Score=200.48 Aligned_cols=250 Identities=14% Similarity=0.170 Sum_probs=182.2
Q ss_pred CCcEEEEeecCCC-CCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCC--CCeEEEEeCCCC
Q 004735 99 HGRLIWLESRPTE-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK--DQRLYKHSIDSK 175 (732)
Q Consensus 99 g~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~--~~~l~~~d~~~~ 175 (732)
..+++|+...... ..+..||..+.++ +..+.++.....+ ....|++++++|+|.... +.+||++|+.+
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg-~~~~~lt~~~~~v-------~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~- 235 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDG-ANVRYLTDGSSLV-------LTPRFSPNRQEITYMSYANGRPRVYLLDLET- 235 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCC-CCcEEEecCCCCe-------EeeEECCCCCEEEEEEecCCCCEEEEEECCC-
Confidence 6788888754321 1266788887653 3555565433111 123456667789998654 34899999998
Q ss_pred CCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCC
Q 004735 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (732)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG 255 (732)
++.++++... .....++|||||++|+|+....+ ..+||++|+++++ .++|+........|.|||||
T Consensus 236 -g~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~spDG 301 (435)
T PRK05137 236 -GQRELVGNFP----GMTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGT---TTRLTDSPAIDTSPSYSPDG 301 (435)
T ss_pred -CcEEEeecCC----CcccCcEECCCCCEEEEEEecCC------CceEEEEECCCCc---eEEccCCCCccCceeEcCCC
Confidence 8888888652 23357889999999988865432 3689999999998 89999877667789999999
Q ss_pred CeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccC
Q 004735 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 256 ~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~ 334 (732)
++|+|.+. +.+ ..+||++|++ +++.+.+. .+ . .....+.|||||+ |+|.+.. .+..+|+++++++
T Consensus 302 ~~i~f~s~-~~g----~~~Iy~~d~~-g~~~~~lt--~~-~----~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~ 367 (435)
T PRK05137 302 SQIVFESD-RSG----SPQLYVMNAD-GSNPRRIS--FG-G----GRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDG 367 (435)
T ss_pred CEEEEEEC-CCC----CCeEEEEECC-CCCeEEee--cC-C----CcccCeEECCCCCEEEEEEcC-CCceEEEEEECCC
Confidence 99999873 322 4579999987 66663332 22 2 4456799999999 8887765 6678899999988
Q ss_pred CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE---EEEEEEECCCCceEEecc
Q 004735 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---SYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 335 g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~---~~ly~~~~~~~~~~~lt~ 398 (732)
+..+.++.. .....+.|++ |++.|+|.+...+. ..||+++++++..+.|+.
T Consensus 368 ~~~~~lt~~-~~~~~p~~sp------------DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 368 SGERILTSG-FLVEGPTWAP------------NGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred CceEeccCC-CCCCCCeECC------------CCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 887777643 3456788886 88999998876655 689999999988887764
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-21 Score=200.96 Aligned_cols=245 Identities=18% Similarity=0.187 Sum_probs=176.3
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
+.+|++|+.+ ++.++|+.. ......+.|||||+.|+|+++ ++||+.++.+++ .++||.+..
T Consensus 23 ~~y~i~d~~~--~~~~~l~~~----~~~~~~~~~sP~g~~~~~v~~----------~nly~~~~~~~~---~~~lT~dg~ 83 (353)
T PF00930_consen 23 GDYYIYDIET--GEITPLTPP----PPKLQDAKWSPDGKYIAFVRD----------NNLYLRDLATGQ---ETQLTTDGE 83 (353)
T ss_dssp EEEEEEETTT--TEEEESS-E----ETTBSEEEE-SSSTEEEEEET----------TEEEEESSTTSE---EEESES--T
T ss_pred eeEEEEecCC--CceEECcCC----ccccccceeecCCCeeEEEec----------CceEEEECCCCC---eEEeccccc
Confidence 4799999998 888888875 233467889999999999986 799999998888 889985431
Q ss_pred ------------------ceeccccCCCCCeEEEEeccCCC----------------------------CCCCccEEEEE
Q 004735 245 ------------------FYAFPRMDPRGERMAWIEWHHPN----------------------------MPWDKAELWVG 278 (732)
Q Consensus 245 ------------------~~~~p~~SPDG~~la~~~~~~~~----------------------------~~~~~~~l~v~ 278 (732)
......|||||++|||.+.++.. .+....+|+++
T Consensus 84 ~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~ 163 (353)
T PF00930_consen 84 PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVV 163 (353)
T ss_dssp TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEE
T ss_pred eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEE
Confidence 12345699999999999876542 22234578999
Q ss_pred EecCCCceeeeEEe---cCCCCCccccCcCceeCCCCc-EEEEE-eccCCeeeEEEEeccCCeEEEecccccccCCCcee
Q 004735 279 YISENGDVYKRVCV---AGFDPTIVESPTEPKWSSKGE-LFFVT-DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWV 353 (732)
Q Consensus 279 d~~~~g~~~~~~~~---~~~~~~~~~~~~~~~wspDg~-l~~~~-~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~ 353 (732)
|++ +|+..++... ...+ .++..+.|++|++ +++.. ++.+....|.++|+.+++.+.+..+ ....|.
T Consensus 164 ~~~-~~~~~~~~~~~~~~~~~----~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e----~~~~Wv 234 (353)
T PF00930_consen 164 DLA-SGKTTELDPPNSLNPQD----YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE----TSDGWV 234 (353)
T ss_dssp ESS-STCCCEE---HHHHTSS----EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE----ESSSSS
T ss_pred ECC-CCcEEEeeeccccCCCc----cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe----cCCcce
Confidence 998 7776444433 2333 7888999999999 66654 5545667788999999888777643 355676
Q ss_pred ecccceeee-eecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe--eEeCCEEEEEEeCCCCC--cEEEE
Q 004735 354 FGINSYEII-QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEP--SSVAK 428 (732)
Q Consensus 354 ~~~~~~~~~-~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~--~~ly~ 428 (732)
.......|+ + +++.+++.++++|+.|||+++.+++..++||.+.+.|..+ .+++++.+|+.++...| .+||+
T Consensus 235 ~~~~~~~~~~~---~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 235 DVYDPPHFLGP---DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSSEEEE-TT---TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred eeecccccccC---CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 544555554 4 7889999999999999999999999999999999999776 44555555555555444 35999
Q ss_pred EEcC-CCcceeee
Q 004735 429 VTLD-DHKLKAVD 440 (732)
Q Consensus 429 ~dl~-~~~~~~lt 440 (732)
++++ ++++++||
T Consensus 312 v~~~~~~~~~~LT 324 (353)
T PF00930_consen 312 VSLDSGGEPKCLT 324 (353)
T ss_dssp EETTETTEEEESS
T ss_pred EEeCCCCCeEecc
Confidence 9999 88887776
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=188.50 Aligned_cols=226 Identities=20% Similarity=0.273 Sum_probs=149.2
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC--ChhhHHhhccCCC-
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY--GREFRERLLGRWG- 551 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~--g~~~~~~~~~~~~- 551 (732)
+..+.+.|... .+++.|+||++||++.. ...+...++.|+++||.|+++|+||.+.. +.. .......|.
T Consensus 12 ~~~~~~~p~~~-----~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~-~~~~~~~~~~ 83 (249)
T PRK10566 12 IEVLHAFPAGQ-----RDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDE-ARRLNHFWQI 83 (249)
T ss_pred cceEEEcCCCC-----CCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcccccCCCcc-ccchhhHHHH
Confidence 44455667541 13457999999998544 34566788999999999999999986532 110 000000011
Q ss_pred -cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc-chhhhhh---h
Q 004735 552 -IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HKFESRY---I 625 (732)
Q Consensus 552 -~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-~~~~~~~---~ 625 (732)
....+|+.++++++.+++.+|.++|+++|||+||++++.++. +|+ +++++.+.+...+..+.... ....... .
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (249)
T PRK10566 84 LLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPW-VKCVASLMGSGYFTSLARTLFPPLIPETAAQQ 162 (249)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCC-eeEEEEeeCcHHHHHHHHHhcccccccccccH
Confidence 123678888899998887789999999999999999999988 665 45554443322211111000 0000000 0
Q ss_pred hhhcCChhhhhhcCccccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCC--CEEEEEeCCCCccCCCcccHHHH
Q 004735 626 DNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGL--PVALVEYEGEQHGFRKAENIKFT 702 (732)
Q Consensus 626 ~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~--~~~~~~~~~~gH~~~~~~~~~~~ 702 (732)
.........+...++...+.++ ++|+|++||++|.++|+.++++++++++.+|. +++++++++++|.+. .+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~-----~~~ 237 (249)
T PRK10566 163 AEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT-----PEA 237 (249)
T ss_pred HHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC-----HHH
Confidence 0000000122334455556666 69999999999999999999999999999886 478999999999874 357
Q ss_pred HHHHHHHHHHHh
Q 004735 703 LEQQMVFFARVV 714 (732)
Q Consensus 703 ~~~~~~fl~~~l 714 (732)
++.+++||+++|
T Consensus 238 ~~~~~~fl~~~~ 249 (249)
T PRK10566 238 LDAGVAFFRQHL 249 (249)
T ss_pred HHHHHHHHHhhC
Confidence 889999999875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=195.72 Aligned_cols=253 Identities=14% Similarity=0.142 Sum_probs=183.7
Q ss_pred CCcEEEEeecC-CCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCC
Q 004735 99 HGRLIWLESRP-TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (732)
Q Consensus 99 g~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~ 175 (732)
+.+++|+.... .+..++.|+..+.+ |+..+.++..... .....|+++++.|+|..... .+||++++++
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~-g~~~~~lt~~~~~-------v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~- 237 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSD-GYNPQTILRSAEP-------ILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT- 237 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCC-CCCceEeecCCCc-------cccccCCCCCCEEEEEecCCCCcEEEEEECCC-
Confidence 56788876533 23345678877765 2345556543211 11234666677899987544 3799999987
Q ss_pred CCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCC
Q 004735 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (732)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG 255 (732)
++.++++... .....+.|||||++|+|+....+ ..+||++|+++++ .++++........|.|||||
T Consensus 238 -g~~~~l~~~~----g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 238 -GQRELVASFR----GINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred -CCEEEeccCC----CCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCC---eEECccCCCCccceEECCCC
Confidence 7888887642 12346889999999988865432 2689999999998 88898766556679999999
Q ss_pred CeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccC
Q 004735 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 256 ~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~ 334 (732)
++|+|.+ ++.+ ..+||+++++ +|+.+.+. ... .....+.|||||+ |+|.+.. .+..+|+++|+++
T Consensus 304 ~~l~f~s-d~~g----~~~iy~~dl~-~g~~~~lt--~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~ 369 (433)
T PRK04922 304 KSIYFTS-DRGG----RPQIYRVAAS-GGSAERLT--FQG-----NYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLST 369 (433)
T ss_pred CEEEEEE-CCCC----CceEEEEECC-CCCeEEee--cCC-----CCccCEEECCCCCEEEEEECC-CCceeEEEEECCC
Confidence 9999997 3332 3579999998 67653332 222 3345799999999 8887765 5677999999999
Q ss_pred CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 335 g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
++.+.|+... ....|.|++ +++.++|.++..+...||.++++++..++|+.+..
T Consensus 370 g~~~~Lt~~~-~~~~p~~sp------------dG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 370 GSVRTLTPGS-LDESPSFAP------------NGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred CCeEECCCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEEcccCCC
Confidence 9988887543 334677876 88999999998888999999999888888876543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=195.60 Aligned_cols=253 Identities=13% Similarity=0.155 Sum_probs=183.5
Q ss_pred CCcEEEEeec-CCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCC
Q 004735 99 HGRLIWLESR-PTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (732)
Q Consensus 99 g~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~ 175 (732)
..++.|+... ..+.+++.|+..+.++ +..+.++..... .....|++++++|+|....+ .+||++++++
T Consensus 162 ~~~ia~v~~~~~~~~~~~~l~~~d~~g-~~~~~l~~~~~~-------~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~- 232 (430)
T PRK00178 162 STRILYVTAERFSVNTRYTLQRSDYDG-ARAVTLLQSREP-------ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT- 232 (430)
T ss_pred eeeEEEEEeeCCCCCcceEEEEECCCC-CCceEEecCCCc-------eeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-
Confidence 4567776543 3345677888877663 344555433201 01224556677899987554 3899999998
Q ss_pred CCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCC
Q 004735 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (732)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG 255 (732)
++.++++... .....+.|||||++|+|+....+ ..+||++|+++++ .++|+........|.|||||
T Consensus 233 -g~~~~l~~~~----g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~spDg 298 (430)
T PRK00178 233 -GRREQITNFE----GLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQ---LSRVTNHPAIDTEPFWGKDG 298 (430)
T ss_pred -CCEEEccCCC----CCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCC---eEEcccCCCCcCCeEECCCC
Confidence 8888888652 12246899999999998765432 2689999999998 88898776667789999999
Q ss_pred CeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccC
Q 004735 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 256 ~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~ 334 (732)
++|+|.+ ++.+ ..+||+++++ +|+.+.+. .. . .+...+.|||||+ |+|.... .+..+|+++|+++
T Consensus 299 ~~i~f~s-~~~g----~~~iy~~d~~-~g~~~~lt--~~-~----~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~t 364 (430)
T PRK00178 299 RTLYFTS-DRGG----KPQIYKVNVN-GGRAERVT--FV-G----NYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQR 364 (430)
T ss_pred CEEEEEE-CCCC----CceEEEEECC-CCCEEEee--cC-C----CCccceEECCCCCEEEEEEcc-CCceEEEEEECCC
Confidence 9999987 3332 3579999998 77764332 12 1 3345789999999 8888766 5677899999999
Q ss_pred CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 335 g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
++.+.|+... ....|.|++ +|+.++|++.+.+...||.++.+++..+.|+.+..
T Consensus 365 g~~~~lt~~~-~~~~p~~sp------------dg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g 418 (430)
T PRK00178 365 GSVRILTDTS-LDESPSVAP------------NGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQG 418 (430)
T ss_pred CCEEEccCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCCCC
Confidence 9998888543 334677876 89999999998899999999998877777765443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=194.07 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=180.2
Q ss_pred CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCCCC
Q 004735 100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKDS 177 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~~~ 177 (732)
++++|+.. ..++..||..+.+ |...+.++..... .....|+++++.|+|....+ .+||++|+.+ +
T Consensus 164 ~~iayv~~---~~~~~~L~~~D~d-G~~~~~l~~~~~~-------v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~--g 230 (427)
T PRK02889 164 TRIAYVIK---TGNRYQLQISDAD-GQNAQSALSSPEP-------IISPAWSPDGTKLAYVSFESKKPVVYVHDLAT--G 230 (427)
T ss_pred cEEEEEEc---cCCccEEEEECCC-CCCceEeccCCCC-------cccceEcCCCCEEEEEEccCCCcEEEEEECCC--C
Confidence 56777653 2355678887765 2244555433211 11235666677899987544 3799999998 7
Q ss_pred CceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCe
Q 004735 178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGER 257 (732)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~ 257 (732)
+.++++... .....+.|||||++|+|.....+ ..+||++|++++. .++|+........|.|||||++
T Consensus 231 ~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~ 297 (427)
T PRK02889 231 RRRVVANFK----GSNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRS 297 (427)
T ss_pred CEEEeecCC----CCccceEECCCCCEEEEEEccCC------CceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCE
Confidence 888887542 12356889999999988765432 3689999999888 8899876666678999999999
Q ss_pred EEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCe
Q 004735 258 MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 258 la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
|+|++ ++.+ ..+||+++++ +|+.+.+. .. . .+...+.|||||+ |+|.+.. .+..+|+++|+++++
T Consensus 298 l~f~s-~~~g----~~~Iy~~~~~-~g~~~~lt--~~-g----~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 298 IYFTS-DRGG----APQIYRMPAS-GGAAQRVT--FT-G----SYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATGQ 363 (427)
T ss_pred EEEEe-cCCC----CcEEEEEECC-CCceEEEe--cC-C----CCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCCC
Confidence 99987 3333 4579999987 66553332 12 1 3345789999999 8888776 666789999999999
Q ss_pred EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCc
Q 004735 337 VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD 402 (732)
Q Consensus 337 ~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~ 402 (732)
.+.++... ....|.|++ +++.|++.++..|...||.++.+++..+.++.+...
T Consensus 364 ~~~lt~~~-~~~~p~~sp------------dg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~ 416 (427)
T PRK02889 364 VTALTDTT-RDESPSFAP------------NGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGD 416 (427)
T ss_pred eEEccCCC-CccCceECC------------CCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCC
Confidence 88887543 335678887 899999999999999999999987777777654443
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=193.43 Aligned_cols=243 Identities=18% Similarity=0.224 Sum_probs=162.6
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+.+...+... +|.++++..+.|.. .....++||++||.+... .+.+...+..|+++||.|+++|+||.|...
T Consensus 31 ~~~~~~~~~~-dg~~l~~~~~~~~~------~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~ 102 (330)
T PLN02298 31 KGSKSFFTSP-RGLSLFTRSWLPSS------SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGHGRSE 102 (330)
T ss_pred ccccceEEcC-CCCEEEEEEEecCC------CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 3455677776 99999998888754 124568999999984332 344555677789999999999999875432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH----
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR---- 614 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~---- 614 (732)
.. ......-....+|+.++++++......+..+++|+||||||.+++.++. +|++++++|+.+|........
T Consensus 103 ~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 179 (330)
T PLN02298 103 GL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPW 179 (330)
T ss_pred Cc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCch
Confidence 11 0000001123788999999998764444568999999999999998887 999999999999865322100
Q ss_pred --hhcchhhhhhhhhh--------cC----Ch--hhhhhcCc----------------------cccCCCCCCCEEEEEe
Q 004735 615 --AETHKFESRYIDNL--------VG----SE--KDYYEKSP----------------------INFVDKFSCPIILFQG 656 (732)
Q Consensus 615 --~~~~~~~~~~~~~~--------~~----~~--~~~~~~sp----------------------~~~~~~i~~P~Lii~G 656 (732)
.....+...+.... +. .. ..+...+| ...+.++++|+|++||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G 259 (330)
T PLN02298 180 PIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHG 259 (330)
T ss_pred HHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEec
Confidence 00000000000000 00 00 00001111 1235678899999999
Q ss_pred CCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--cc-cHHHHHHHHHHHHHHHhC
Q 004735 657 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AE-NIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 657 ~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~-~~~~~~~~~~~fl~~~l~ 715 (732)
++|.++|++.++++++.++.. +.+++++++++|.+.. ++ ..+.+.+.+.+|+.++++
T Consensus 260 ~~D~ivp~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~ 319 (330)
T PLN02298 260 SADVVTDPDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCT 319 (330)
T ss_pred CCCCCCCHHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999998887643 4589999999998642 22 345678889999999986
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=185.41 Aligned_cols=242 Identities=18% Similarity=0.192 Sum_probs=162.2
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHH-HHCCCEEEEEcC--CCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNY--GGST 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l-~~~G~~v~~~d~--rG~~ 536 (732)
+.+...+.+...+.++.+.+|.|+... .++.|+|+++||.+.....+......+.+ .+.||.|++||. ||.+
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~-----~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~ 86 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAA-----AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTG 86 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCcc-----CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCC
Confidence 345566666556788899999997622 34579999999986544333322223334 457999999997 5543
Q ss_pred CCCh----------hh-HHhhccCCC--cccHHHHHHHHHHHH-hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEE
Q 004735 537 GYGR----------EF-RERLLGRWG--IVDVNDCCSCATFLV-GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAG 601 (732)
Q Consensus 537 g~g~----------~~-~~~~~~~~~--~~~~~D~~~~i~~l~-~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~ 601 (732)
..+. .+ .+.....+. ......+.+.+..++ ++..+|.++++|+||||||++++.++. +|++++++
T Consensus 87 ~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~ 166 (275)
T TIGR02821 87 IAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSV 166 (275)
T ss_pred CCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEE
Confidence 2211 11 110000011 011233334444433 335678899999999999999999998 99999999
Q ss_pred EeecCcCCHHHHHhhcchhhhhhhhhhcC-ChhhhhhcCccccCCC--CCCCEEEEEeCCCCccCh-HHHHHHHHHHHhC
Q 004735 602 ASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPP-DQARKIYKALKEN 677 (732)
Q Consensus 602 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~--i~~P~Lii~G~~D~~v~~-~~~~~~~~~l~~~ 677 (732)
++.+|+.+.... .+...++...++ +++.+...+|...+.. ...|+++.||++|+.++. .+...+.+.|+++
T Consensus 167 ~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~ 241 (275)
T TIGR02821 167 SAFAPIVAPSRC-----PWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAA 241 (275)
T ss_pred EEECCccCcccC-----cchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHc
Confidence 999999775321 111122233333 2334444555544433 457999999999999998 6888999999999
Q ss_pred CCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 678 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 678 g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
|+++++.+++|++|+|. .....+...++|+.+++
T Consensus 242 g~~v~~~~~~g~~H~f~---~~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 242 GQALTLRRQAGYDHSYY---FIASFIADHLRHHAERL 275 (275)
T ss_pred CCCeEEEEeCCCCccch---hHHHhHHHHHHHHHhhC
Confidence 99999999999999984 55677888888887653
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=187.82 Aligned_cols=241 Identities=20% Similarity=0.225 Sum_probs=158.9
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHHCCCEEEEEcCCCCC--
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGST-- 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rG~~-- 536 (732)
..+.+++.++.-|..+.+.+|.|+.. ++++.|+|+++||++.....+.. ....+.+...|++|+.||..+.+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~-----~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~ 91 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS-----DSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLN 91 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc-----cCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCC
Confidence 45666777765788899999999731 25678999999997554432221 12345667789999999965322
Q ss_pred ----------CCChh-hHHhhccCCCcc-----cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcce
Q 004735 537 ----------GYGRE-FRERLLGRWGIV-----DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFK 599 (732)
Q Consensus 537 ----------g~g~~-~~~~~~~~~~~~-----~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~ 599 (732)
+++.+ +.+.....|+.. ..+++...++.... .+|.++++|+|+|+||++++.++. +|++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~ 169 (283)
T PLN02442 92 VEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYK 169 (283)
T ss_pred CCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEE
Confidence 01111 111111111111 12333333333322 358899999999999999999988 999999
Q ss_pred EEEeecCcCCHHHHHhhcchhhhhhhhhhcC-Chhhhhhc---CccccCCCCCCCEEEEEeCCCCccChH-HHHHHHHHH
Q 004735 600 AGASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEK---SPINFVDKFSCPIILFQGLEDKVVPPD-QARKIYKAL 674 (732)
Q Consensus 600 a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---sp~~~~~~i~~P~Lii~G~~D~~v~~~-~~~~~~~~l 674 (732)
++++.+|+.++.... +....+...++ +.+.+.+. +++..+...++|+|++||++|.+++.. ++..+++++
T Consensus 170 ~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l 244 (283)
T PLN02442 170 SVSAFAPIANPINCP-----WGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEAC 244 (283)
T ss_pred EEEEECCccCcccCc-----hhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHH
Confidence 999999998754211 10111122222 22334434 444555567899999999999999874 578999999
Q ss_pred HhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 675 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++.|.+++++++++++|.+. ....+++..+.|..++++
T Consensus 245 ~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 245 KEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred HHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999864 445566666677766664
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=191.79 Aligned_cols=231 Identities=16% Similarity=0.108 Sum_probs=156.8
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
..+.++++.. +|..++++++.|.. .++.|+||+.||. .+.....+...++.|+++||+|+++|+||.+...
T Consensus 167 ~~e~v~i~~~-~g~~l~g~l~~P~~-------~~~~P~Vli~gG~-~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~ 237 (414)
T PRK05077 167 ELKELEFPIP-GGGPITGFLHLPKG-------DGPFPTVLVCGGL-DSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSS 237 (414)
T ss_pred ceEEEEEEcC-CCcEEEEEEEECCC-------CCCccEEEEeCCc-ccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence 3578999986 77799999999974 4567888876664 3322334556778899999999999999865432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-H---HH
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-M---LR 614 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-~---~~ 614 (732)
.. ... ........++++++.+.+.+|.+||+++|||+||++++.++. +|++++++|+.+|+.+.. . ..
T Consensus 238 ~~---~~~----~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~ 310 (414)
T PRK05077 238 KW---KLT----QDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQ 310 (414)
T ss_pred CC---Ccc----ccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhh
Confidence 11 000 011223357889999888899999999999999999999988 888999999999886411 0 00
Q ss_pred hhcchhhhhhhhhhcC----Chhhh----hhcCcc--c-cCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEE
Q 004735 615 AETHKFESRYIDNLVG----SEKDY----YEKSPI--N-FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 683 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~----~~~~~----~~~sp~--~-~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (732)
..........+...++ +.+.+ ..++.. . ...++++|+|+++|++|.++|+++++.+.+... +.++
T Consensus 311 ~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l 386 (414)
T PRK05077 311 QQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKL 386 (414)
T ss_pred hhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeE
Confidence 0000000111111111 11111 111111 1 125688999999999999999999987765543 4588
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 684 VEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 684 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+++++. |.+ +...+.+..+.+||+++|
T Consensus 387 ~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 387 LEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred EEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 999986 433 467899999999999876
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-20 Score=181.65 Aligned_cols=204 Identities=20% Similarity=0.287 Sum_probs=142.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCC-CChhh--HHhhccC--
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG-YGREF--RERLLGR-- 549 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g-~g~~~--~~~~~~~-- 549 (732)
+.+++..|++ .++.|.||++|+..+.. ......++.|+++||.|++||+-+..+ ..... .......
T Consensus 1 ~~ay~~~P~~-------~~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~ 71 (218)
T PF01738_consen 1 IDAYVARPEG-------GGPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELF 71 (218)
T ss_dssp EEEEEEEETT-------SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCH
T ss_pred CeEEEEeCCC-------CCCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHH
Confidence 4678888976 35789999999963322 445567889999999999999654333 11111 1111110
Q ss_pred --CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchhhhhhhhh
Q 004735 550 --WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDN 627 (732)
Q Consensus 550 --~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 627 (732)
.......|+.+++++|.+++.++.+||+++|+|+||.+++.++...+.++++++.+|.....
T Consensus 72 ~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~~~~~a~v~~yg~~~~~---------------- 135 (218)
T PF01738_consen 72 APRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARDPRVDAAVSFYGGSPPP---------------- 135 (218)
T ss_dssp HHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCTTTSSEEEEES-SSSGG----------------
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhccccceEEEEcCCCCCC----------------
Confidence 11123678889999999998788999999999999999999998557899999999911100
Q ss_pred hcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc-------ccHH
Q 004735 628 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA-------ENIK 700 (732)
Q Consensus 628 ~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~-------~~~~ 700 (732)
.+.....++++|+|+++|++|+.++.+...++.+.|++.|.++++++|+|++|+|..+ +..+
T Consensus 136 -----------~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~ 204 (218)
T PF01738_consen 136 -----------PPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAE 204 (218)
T ss_dssp -----------GHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHH
T ss_pred -----------cchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHH
Confidence 0112244678999999999999999999999999999999999999999999998543 3466
Q ss_pred HHHHHHHHHHHHHh
Q 004735 701 FTLEQQMVFFARVV 714 (732)
Q Consensus 701 ~~~~~~~~fl~~~l 714 (732)
+.++++++||+++|
T Consensus 205 ~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 205 DAWQRTLAFFKRHL 218 (218)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcC
Confidence 78889999998876
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=188.09 Aligned_cols=238 Identities=14% Similarity=0.149 Sum_probs=170.4
Q ss_pred CCEEEEEeCC-----CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 154 GDTVIFSNYK-----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 154 ~~~i~f~~~~-----~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
+.+|+|+... +.+||++|.++ ...++|+.. ......++|||||++|+|+..+.. ..+||++|+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg--~~~~~lt~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~i~i~dl 235 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG--FNQFIVNRS----SQPLMSPAWSPDGSKLAYVSFENK------KSQLVVHDL 235 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC--CCceEeccC----CCccccceEcCCCCEEEEEEecCC------CcEEEEEeC
Confidence 4578777543 24899999987 667888875 345578999999999999876432 258999999
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
.+++ .++++...+....|+|||||++|+|..... +..+||++|++ +++.+ .+.... .....+.|
T Consensus 236 ~tg~---~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~-~~~~~---~lt~~~----~~~~~~~w 299 (429)
T PRK01742 236 RSGA---RKVVASFRGHNGAPAFSPDGSRLAFASSKD-----GVLNIYVMGAN-GGTPS---QLTSGA----GNNTEPSW 299 (429)
T ss_pred CCCc---eEEEecCCCccCceeECCCCCEEEEEEecC-----CcEEEEEEECC-CCCeE---eeccCC----CCcCCEEE
Confidence 9887 777775555556799999999999986333 24569999987 66653 233333 45678999
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
+|||+ |+|.+++ .|..+||.++..++..+.+... . ..+.|++ +++.|++.+. ..++++|
T Consensus 300 SpDG~~i~f~s~~-~g~~~I~~~~~~~~~~~~l~~~-~--~~~~~Sp------------DG~~ia~~~~----~~i~~~D 359 (429)
T PRK01742 300 SPDGQSILFTSDR-SGSPQVYRMSASGGGASLVGGR-G--YSAQISA------------DGKTLVMING----DNVVKQD 359 (429)
T ss_pred CCCCCEEEEEECC-CCCceEEEEECCCCCeEEecCC-C--CCccCCC------------CCCEEEEEcC----CCEEEEE
Confidence 99999 9999887 7888999999888877666422 1 2456776 8888887754 3578889
Q ss_pred CCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 388 DFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 388 ~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
+.+++.+.++.... ...+ ..++++.+++++.......++.++.+++..++|+
T Consensus 360 l~~g~~~~lt~~~~-~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 360 LTSGSTEVLSSTFL-DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCCCCeEEecCCCC-CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 99998888875432 2222 4455666666666555556778887776655543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-18 Score=186.03 Aligned_cols=243 Identities=17% Similarity=0.198 Sum_probs=174.5
Q ss_pred CCEEEEEeCC----CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 154 GDTVIFSNYK----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 154 ~~~i~f~~~~----~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
+++++|.... ..+||++|.++ +..++|+.. ......+.|||||++|+|+..... ..+||++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~----~~~~~~p~~Spdg~~la~~~~~~~------~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSGKSRRYELQVADYDG--ANPQTITRS----REPILSPAWSPDGQKLAYVSFESG------KPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeCCCCcceEEEEcCCC--CCCEEeecC----CCceecccCCCCCCEEEEEEcCCC------CcEEEEEECC
Confidence 4567777543 23799999986 778888865 234567889999999999865332 2689999999
Q ss_pred CCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 230 ~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
+++ .+.++........++|||||++|+|..... +..+||++++. +++.+.+ .... .....+.|+
T Consensus 223 ~g~---~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-----~~~~i~~~d~~-~~~~~~l---~~~~----~~~~~~~~s 286 (417)
T TIGR02800 223 TGQ---REKVASFPGMNGAPAFSPDGSKLAVSLSKD-----GNPDIYVMDLD-GKQLTRL---TNGP----GIDTEPSWS 286 (417)
T ss_pred CCC---EEEeecCCCCccceEECCCCCEEEEEECCC-----CCccEEEEECC-CCCEEEC---CCCC----CCCCCEEEC
Confidence 987 677765555556799999999999876332 24579999998 6655332 2222 234578999
Q ss_pred CCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 310 pDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|||+ |+|.+++ .+..+||++++.+++.++++........+.|++ +++.|+++....+..+||++++
T Consensus 287 ~dg~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp------------dg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 287 PDGKSIAFTSDR-GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP------------DGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccCeEECC------------CCCEEEEEEccCCceEEEEEeC
Confidence 9999 8888887 677799999999998888875544445667775 8888999887777889999999
Q ss_pred CCCceEEeccCCCceE-EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCccee
Q 004735 389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA 438 (732)
Q Consensus 389 ~~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~ 438 (732)
+++..+.++....... .++.+++.+++ .+...+...+|+++++++..++
T Consensus 354 ~~~~~~~l~~~~~~~~p~~spdg~~l~~-~~~~~~~~~l~~~~~~g~~~~~ 403 (417)
T TIGR02800 354 DGGGERVLTDTGLDESPSFAPNGRMILY-ATTRGGRGVLGLVSTDGRFRAR 403 (417)
T ss_pred CCCCeEEccCCCCCCCceECCCCCEEEE-EEeCCCcEEEEEEECCCceeeE
Confidence 9988888876433222 22344444544 4445555678888877665433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=169.13 Aligned_cols=235 Identities=17% Similarity=0.237 Sum_probs=167.3
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhH
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~ 543 (732)
-.+... +|..+....|.|.+ ..+++.+|+++||+ +....+.+...+..|+..||.|+++|++|.+++..
T Consensus 30 ~~~~n~-rG~~lft~~W~p~~------~~~pr~lv~~~HG~-g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdG--- 98 (313)
T KOG1455|consen 30 SFFTNP-RGAKLFTQSWLPLS------GTEPRGLVFLCHGY-GEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDG--- 98 (313)
T ss_pred eeEEcC-CCCEeEEEecccCC------CCCCceEEEEEcCC-cccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCC---
Confidence 344555 89999999999965 23667899999997 34455778888999999999999999998765321
Q ss_pred HhhccCCCc--ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh----
Q 004735 544 ERLLGRWGI--VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE---- 616 (732)
Q Consensus 544 ~~~~~~~~~--~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~---- 616 (732)
...-... .-++|+..-++.+..+........+++||||||.+++.++. +|..+.++|+.+|..-+..-...
T Consensus 99 --l~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v 176 (313)
T KOG1455|consen 99 --LHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPV 176 (313)
T ss_pred --CcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHH
Confidence 1111111 12777888888777665445568999999999999999998 99999999999987633211100
Q ss_pred ------cchhhhhh--------hhhhcCChh--hhhhcCc----------------------cccCCCCCCCEEEEEeCC
Q 004735 617 ------THKFESRY--------IDNLVGSEK--DYYEKSP----------------------INFVDKFSCPIILFQGLE 658 (732)
Q Consensus 617 ------~~~~~~~~--------~~~~~~~~~--~~~~~sp----------------------~~~~~~i~~P~Lii~G~~ 658 (732)
...+...| .+....+++ .....+| ..++.+++.|+||+||++
T Consensus 177 ~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~d 256 (313)
T KOG1455|consen 177 ISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTD 256 (313)
T ss_pred HHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCC
Confidence 00000000 000000111 1112222 234778899999999999
Q ss_pred CCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCC---CcccHHHHHHHHHHHHHHH
Q 004735 659 DKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR---KAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 659 D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~fl~~~ 713 (732)
|.++.+..++++++..... +.++.+|||+-|.+. .+++...++..+++|+++.
T Consensus 257 D~VTDp~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 257 DKVTDPKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred CcccCcHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 9999999999999988776 458999999999875 5688899999999999875
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-19 Score=183.55 Aligned_cols=242 Identities=14% Similarity=0.119 Sum_probs=157.8
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCC
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g 537 (732)
+...++..+... +|.++++..+.|.. +.++||++||.. .....+...+..++++||.|+++|+||.|.
T Consensus 27 ~~~~~~~~~~~~-~g~~l~~~~~~~~~---------~~~~vll~HG~~--~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~ 94 (330)
T PRK10749 27 WRQREEAEFTGV-DDIPIRFVRFRAPH---------HDRVVVICPGRI--ESYVKYAELAYDLFHLGYDVLIIDHRGQGR 94 (330)
T ss_pred HhhccceEEEcC-CCCEEEEEEccCCC---------CCcEEEEECCcc--chHHHHHHHHHHHHHCCCeEEEEcCCCCCC
Confidence 344566777776 89999988887632 247899999973 333345566777889999999999998766
Q ss_pred CChhhHHhhccCCC--cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH---
Q 004735 538 YGREFRERLLGRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--- 611 (732)
Q Consensus 538 ~g~~~~~~~~~~~~--~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~--- 611 (732)
..........+... ..-++|+.+.++.+.+. .+..++.++||||||.+++.++. +|++++++|+.+|.....
T Consensus 95 S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~ 172 (330)
T PRK10749 95 SGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPL 172 (330)
T ss_pred CCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCC
Confidence 54321110000000 01245666666665443 24578999999999999998887 999999999999864311
Q ss_pred -H-H-------Hhhcc-----------hh-------------hh---hhhhhhcCChh-------------hhhh-cCcc
Q 004735 612 -M-L-------RAETH-----------KF-------------ES---RYIDNLVGSEK-------------DYYE-KSPI 641 (732)
Q Consensus 612 -~-~-------~~~~~-----------~~-------------~~---~~~~~~~~~~~-------------~~~~-~sp~ 641 (732)
. . ..... .+ .. .+......++. .+.. ....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
T PRK10749 173 PSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVL 252 (330)
T ss_pred CcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHH
Confidence 0 0 00000 00 00 00000000000 0000 0112
Q ss_pred ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCC---CCEEEEEeCCCCccCCCccc--HHHHHHHHHHHHHHH
Q 004735 642 NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG---LPVALVEYEGEQHGFRKAEN--IKFTLEQQMVFFARV 713 (732)
Q Consensus 642 ~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g---~~~~~~~~~~~gH~~~~~~~--~~~~~~~~~~fl~~~ 713 (732)
..+.++++|+|+++|++|.+++++.+..+++.+++.+ .+++++++++++|....+.. .+.+++.+++||+++
T Consensus 253 ~~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 253 AGAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred hhccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 3467789999999999999999999999999998765 34589999999998765433 678889999999764
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=169.39 Aligned_cols=214 Identities=21% Similarity=0.267 Sum_probs=167.5
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+.+++++. +.++.+++..|.. ..+.|.||++|+..+ ........++.|++.||.|++||+-+..+....
T Consensus 3 ~~v~~~~~--~~~~~~~~a~P~~-------~~~~P~VIv~hei~G--l~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~ 71 (236)
T COG0412 3 TDVTIPAP--DGELPAYLARPAG-------AGGFPGVIVLHEIFG--LNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTD 71 (236)
T ss_pred cceEeeCC--CceEeEEEecCCc-------CCCCCEEEEEecccC--CchHHHHHHHHHHhCCcEEEechhhccCCCCCc
Confidence 45778875 5899999999987 344599999999633 334667788999999999999996442221111
Q ss_pred hH----Hhhc-----cCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHH
Q 004735 542 FR----ERLL-----GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSM 612 (732)
Q Consensus 542 ~~----~~~~-----~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~ 612 (732)
.. .... ..+ .....|+.++++||..++.++.+||+++|+|+||.+++.++.....++++++++|..-..
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~v~a~v~fyg~~~~~- 149 (236)
T COG0412 72 IEDEPAELETGLVERVDP-AEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAVAFYGGLIAD- 149 (236)
T ss_pred ccccHHHHhhhhhccCCH-HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCCccEEEEecCCCCCC-
Confidence 11 1111 111 345889999999999998889999999999999999999999555899999999863211
Q ss_pred HHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 613 LRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
......++++|+|+.+|+.|..+|......+.+.+.++++.+++.+|+++.|+
T Consensus 150 ---------------------------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~ 202 (236)
T COG0412 150 ---------------------------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHG 202 (236)
T ss_pred ---------------------------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccc
Confidence 01125678999999999999999999999999999999888999999999999
Q ss_pred CCCcc----------cHHHHHHHHHHHHHHHhC
Q 004735 693 FRKAE----------NIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 693 ~~~~~----------~~~~~~~~~~~fl~~~l~ 715 (732)
|..+. ...+.++++++||+++++
T Consensus 203 F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 203 FANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred cccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 97542 356788999999999885
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-19 Score=180.68 Aligned_cols=237 Identities=27% Similarity=0.423 Sum_probs=157.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
....++|.+. +|.+|+++++.|++ ..++.|+||.+||.+... ..+. ....++.+||+|+.+|.||.++..
T Consensus 55 ~vy~v~f~s~-~g~~V~g~l~~P~~------~~~~~Pavv~~hGyg~~~--~~~~-~~~~~a~~G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 55 EVYDVSFESF-DGSRVYGWLYRPKN------AKGKLPAVVQFHGYGGRS--GDPF-DLLPWAAAGYAVLAMDVRGQGGRS 124 (320)
T ss_dssp EEEEEEEEEG-GGEEEEEEEEEES-------SSSSEEEEEEE--TT--G--GGHH-HHHHHHHTT-EEEEE--TTTSSSS
T ss_pred EEEEEEEEcc-CCCEEEEEEEecCC------CCCCcCEEEEecCCCCCC--CCcc-cccccccCCeEEEEecCCCCCCCC
Confidence 4567899987 99999999999985 257899999999974332 2222 233578999999999999987543
Q ss_pred hhhHHhh----cc--CCCcc----------cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEe
Q 004735 540 REFRERL----LG--RWGIV----------DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 603 (732)
Q Consensus 540 ~~~~~~~----~~--~~~~~----------~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~ 603 (732)
....... .+ ..|.. .+.|+..++++|.+.+.+|.+||++.|.|.||.+++.+++..++|+++++
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~rv~~~~~ 204 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPRVKAAAA 204 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST-SEEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCccccEEEe
Confidence 3221110 00 01111 26899999999999999999999999999999999999995557999999
Q ss_pred ecCc-CCHHHHHhhcc---hh--hhhhhh---hhcC-Ch---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHH
Q 004735 604 LYGV-ADLSMLRAETH---KF--ESRYID---NLVG-SE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKI 670 (732)
Q Consensus 604 ~~~~-~d~~~~~~~~~---~~--~~~~~~---~~~~-~~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~ 670 (732)
..|. .|+........ .+ ...|+. .... .+ +.+.-.+..+.+.+|++|+++..|-.|.+||+......
T Consensus 205 ~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~ 284 (320)
T PF05448_consen 205 DVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAA 284 (320)
T ss_dssp ESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHH
T ss_pred cCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHH
Confidence 9885 56665433221 11 122322 1111 11 23455677888999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 671 YKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
++.+.. +.++.+||..+|.... ....++.++||.++
T Consensus 285 yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 285 YNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp HCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred HhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 999975 6799999999996432 23367888998874
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-19 Score=179.44 Aligned_cols=226 Identities=17% Similarity=0.203 Sum_probs=154.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
||..+++.+|.|.. .+.|+|+++||.+ .....|...++.|+++||.|+++|+||.|..... ......+
T Consensus 9 ~g~~l~~~~~~~~~--------~~~~~v~llHG~~--~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~--~~~~~~~ 76 (276)
T PHA02857 9 DNDYIYCKYWKPIT--------YPKALVFISHGAG--EHSGRYEELAENISSLGILVFSHDHIGHGRSNGE--KMMIDDF 76 (276)
T ss_pred CCCEEEEEeccCCC--------CCCEEEEEeCCCc--cccchHHHHHHHHHhCCCEEEEccCCCCCCCCCc--cCCcCCH
Confidence 89999999998842 3458899999973 4456777889999999999999999987643221 0001111
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh----------c--
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE----------T-- 617 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~----------~-- 617 (732)
. ..++|+...++++.+.. ..++++++|||+||.+++.++. +|++++++|+.+|..+....... .
T Consensus 77 ~-~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 77 G-VYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred H-HHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 1 12677777777776542 2468999999999999999887 99999999999997542211000 0
Q ss_pred ch----hhhhhhh-------hhcCCh--------hhh-h----h-cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHH
Q 004735 618 HK----FESRYID-------NLVGSE--------KDY-Y----E-KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYK 672 (732)
Q Consensus 618 ~~----~~~~~~~-------~~~~~~--------~~~-~----~-~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (732)
.. +...... ....++ ..+ . . ......+.++++|+|+++|++|.++|+..+.++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~ 233 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFMQ 233 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHHH
Confidence 00 0000000 000000 000 0 0 00123467889999999999999999999999988
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCc--ccHHHHHHHHHHHHHHHh
Q 004735 673 ALKENGLPVALVEYEGEQHGFRKA--ENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 673 ~l~~~g~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~~~l 714 (732)
.+.. ++++++++++||.+..+ +..+++++.+.+||++..
T Consensus 234 ~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 234 HANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 7743 46899999999987644 447889999999998863
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=177.13 Aligned_cols=230 Identities=17% Similarity=0.251 Sum_probs=161.4
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC-CcccHHHHHHHH-CCCEEEEEcCCCCCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGY 538 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~d~rG~~g~ 538 (732)
.+.+.+++. +| .+.+.+|.|.. ...|+||++|||++.... ..+......|+. .|+.|+.+|||.++++
T Consensus 57 ~~~~~i~~~-~g-~i~~~~y~P~~--------~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 57 TRAYMVPTP-YG-QVETRLYYPQP--------DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEEEecC-CC-ceEEEEECCCC--------CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 566778876 55 68999999953 235999999999765433 234556677776 5999999999987653
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-C------CCcceEEEeecCcC
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F------RDTFKAGASLYGVA 608 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~------p~~~~a~v~~~~~~ 608 (732)
.. . ..++|+.++++|+.++ ..+|++||+|+|+|+||++++.++. . +.+++++++++|+.
T Consensus 127 ~~----------p-~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 127 RF----------P-QAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred CC----------C-CcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 21 1 2378999999998763 5678999999999999999998875 1 35789999999988
Q ss_pred CHHHHHhh---cc---hh----hhhhhhhhcCChhhhhhcCccccC--CCC---CCCEEEEEeCCCCccChHHHHHHHHH
Q 004735 609 DLSMLRAE---TH---KF----ESRYIDNLVGSEKDYYEKSPINFV--DKF---SCPIILFQGLEDKVVPPDQARKIYKA 673 (732)
Q Consensus 609 d~~~~~~~---~~---~~----~~~~~~~~~~~~~~~~~~sp~~~~--~~i---~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (732)
++...... .. .+ ...+...++++.. ...+|.... ..+ -.|++|++|+.|... .+++.+.++
T Consensus 196 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~--~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~ 271 (318)
T PRK10162 196 GLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDA--DRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQT 271 (318)
T ss_pred CCCCChhHHHhCCCccccCHHHHHHHHHHhCCCcc--ccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHH
Confidence 75321100 00 00 0111112222111 012232111 222 379999999999875 589999999
Q ss_pred HHhCCCCEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHhC
Q 004735 674 LKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 674 l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 715 (732)
|+++|+++++++++|..|+|... +...+.++.+.+||+++++
T Consensus 272 L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 272 LAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999997432 3456788889999998875
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=184.52 Aligned_cols=239 Identities=14% Similarity=0.150 Sum_probs=156.0
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhh
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~ 542 (732)
+..+... +|.++.+..+.|.+ .+..|+||++||.+... ...+...+..|++.||.|+++|+||.|......
T Consensus 63 ~~~~~~~-~g~~l~~~~~~p~~-------~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~ 133 (349)
T PLN02385 63 ESYEVNS-RGVEIFSKSWLPEN-------SRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGFGLSEGLH 133 (349)
T ss_pred eeeEEcC-CCCEEEEEEEecCC-------CCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC
Confidence 3344455 89999999998864 34568999999974322 223456778888899999999999875432110
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH------H--
Q 004735 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM------L-- 613 (732)
Q Consensus 543 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~------~-- 613 (732)
.....+ ...++|+.+.++.+..+...+..+++|+||||||.+++.++. +|++++++|+++|...... .
T Consensus 134 --~~~~~~-~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~ 210 (349)
T PLN02385 134 --GYIPSF-DDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVL 210 (349)
T ss_pred --CCcCCH-HHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHH
Confidence 000000 012567777777776544445568999999999999999988 9999999999998643210 0
Q ss_pred --H---hh-cch--h--hhhhhhhhcCCh-----------------------hhhhh-cCccccCCCCCCCEEEEEeCCC
Q 004735 614 --R---AE-THK--F--ESRYIDNLVGSE-----------------------KDYYE-KSPINFVDKFSCPIILFQGLED 659 (732)
Q Consensus 614 --~---~~-~~~--~--~~~~~~~~~~~~-----------------------~~~~~-~sp~~~~~~i~~P~Lii~G~~D 659 (732)
. .. ... . ...+....+.+. +.+.. ......+.++++|+|++||++|
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D 290 (349)
T PLN02385 211 QILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEAD 290 (349)
T ss_pred HHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCC
Confidence 0 00 000 0 000000000000 00000 0112336778999999999999
Q ss_pred CccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--ccc-HHHHHHHHHHHHHHHhC
Q 004735 660 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AEN-IKFTLEQQMVFFARVVG 715 (732)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~-~~~~~~~~~~fl~~~l~ 715 (732)
.++++..++.+++.+... +.+++++++++|.+.. ++. ...+++.+++||++++.
T Consensus 291 ~vv~~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 291 KVTDPSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CccChHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 999999999998877532 4589999999998653 222 44588999999998874
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-19 Score=161.15 Aligned_cols=202 Identities=18% Similarity=0.253 Sum_probs=153.5
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
..||++||.. ......+.+.++|.++||.|.+|+|+|.+-.+..+......+| .+|+.++.++|.++++ +.
T Consensus 16 ~AVLllHGFT--Gt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e 86 (243)
T COG1647 16 RAVLLLHGFT--GTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE 86 (243)
T ss_pred EEEEEEeccC--CCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence 7899999983 3345677889999999999999999998877777777666666 7899999999998753 68
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH---HHhhcchhhhhhhhhhcC-C----hhhhhhc--------
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---LRAETHKFESRYIDNLVG-S----EKDYYEK-------- 638 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~---~~~~~~~~~~~~~~~~~~-~----~~~~~~~-------- 638 (732)
|.++|.||||.+++.++. +| .+++|.+|+...... .....-.+..+ .....+ + .+.|...
T Consensus 87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~-~kk~e~k~~e~~~~e~~~~~~~~~~~~ 163 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRN-AKKYEGKDQEQIDKEMKSYKDTPMTTT 163 (243)
T ss_pred EEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHH-hhhccCCCHHHHHHHHHHhhcchHHHH
Confidence 999999999999999998 77 788888877654221 11111110000 001111 0 0111111
Q ss_pred --------CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 639 --------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 639 --------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
.....++.|..|+++++|.+|..+|.+.+..+++.+... +.++.+|++.||.+...+.++++.+.++.||
T Consensus 164 ~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL 241 (243)
T COG1647 164 AQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESD--DKELKWLEGSGHVITLDKERDQVEEDVITFL 241 (243)
T ss_pred HHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccCC--cceeEEEccCCceeecchhHHHHHHHHHHHh
Confidence 123457788999999999999999999999999998765 5599999999999999899999999999998
Q ss_pred H
Q 004735 711 A 711 (732)
Q Consensus 711 ~ 711 (732)
+
T Consensus 242 ~ 242 (243)
T COG1647 242 E 242 (243)
T ss_pred h
Confidence 6
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-18 Score=179.08 Aligned_cols=238 Identities=13% Similarity=0.103 Sum_probs=161.0
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
....+... ++..+++..|.|.. ....|+||++||.+. ....+...+..|+++||.|+++|+||.+.....
T Consensus 111 ~~~~~~~~-~~~~l~~~~~~p~~-------~~~~~~Vl~lHG~~~--~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~ 180 (395)
T PLN02652 111 ATSLFYGA-RRNALFCRSWAPAA-------GEMRGILIIIHGLNE--HSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL 180 (395)
T ss_pred EEEEEECC-CCCEEEEEEecCCC-------CCCceEEEEECCchH--HHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 44556666 78899999998864 345689999999743 334466788889999999999999987654322
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCC---cceEEEeecCcCCHHHH---Hh
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLYGVADLSML---RA 615 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~---~~~a~v~~~~~~d~~~~---~~ 615 (732)
.. .........+|+.++++++..+. +..+++++||||||.+++.++.+|+ +++++|+.+|...+... ..
T Consensus 181 ~~---~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~~p~~~~~v~glVL~sP~l~~~~~~~~~~ 255 (395)
T PLN02652 181 HG---YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAASYPSIEDKLEGIVLTSPALRVKPAHPIVG 255 (395)
T ss_pred CC---CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHhccCcccccceEEEECcccccccchHHHH
Confidence 10 00000112578888888887652 2357999999999999998776664 79999999997543210 00
Q ss_pred hcchhhhhh----------------------hhhhcCChhhhh------------hcC--ccccCCCCCCCEEEEEeCCC
Q 004735 616 ETHKFESRY----------------------IDNLVGSEKDYY------------EKS--PINFVDKFSCPIILFQGLED 659 (732)
Q Consensus 616 ~~~~~~~~~----------------------~~~~~~~~~~~~------------~~s--p~~~~~~i~~P~Lii~G~~D 659 (732)
....+.... ......++..+. ... ....+.++++|+|++||++|
T Consensus 256 ~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D 335 (395)
T PLN02652 256 AVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTAD 335 (395)
T ss_pred HHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCC
Confidence 000000000 000000000000 000 11335678999999999999
Q ss_pred CccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 660 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
.++|++.+.++++.+... ..+++++++++|....++..+++++.+.+||+.+++.
T Consensus 336 ~vvp~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~~ 390 (395)
T PLN02652 336 RVTDPLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLDL 390 (395)
T ss_pred CCCCHHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999887543 4588899999998766667899999999999998863
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-17 Score=171.09 Aligned_cols=230 Identities=15% Similarity=0.186 Sum_probs=170.7
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
.+|++.|-++ ...+.++.. ......|.|+|||+.++|+.-.... ..++|++++++++ ..++..-..
T Consensus 173 ~~l~~~D~dg--~~~~~l~~~----~~~~~~p~ws~~~~~~~y~~f~~~~-----~~~i~~~~l~~g~---~~~i~~~~g 238 (425)
T COG0823 173 YELALGDYDG--YNQQKLTDS----GSLILTPAWSPDGKKLAYVSFELGG-----CPRIYYLDLNTGK---RPVILNFNG 238 (425)
T ss_pred ceEEEEccCC--cceeEeccc----CcceeccccCcCCCceEEEEEecCC-----CceEEEEeccCCc---cceeeccCC
Confidence 4899999885 667777765 4556778999999999998554332 1589999999988 666666566
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCC
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g 323 (732)
....|+|||||++|+|...++ ...+||++|+. ++...+ +.... +....|.|+|||+ |+|.+++ .|
T Consensus 239 ~~~~P~fspDG~~l~f~~~rd-----g~~~iy~~dl~-~~~~~~---Lt~~~----gi~~~Ps~spdG~~ivf~Sdr-~G 304 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRD-----GSPDIYLMDLD-GKNLPR---LTNGF----GINTSPSWSPDGSKIVFTSDR-GG 304 (425)
T ss_pred ccCCccCCCCCCEEEEEECCC-----CCccEEEEcCC-CCccee---cccCC----ccccCccCCCCCCEEEEEeCC-CC
Confidence 667899999999999998544 36779999998 555422 33333 4445999999999 9999999 99
Q ss_pred eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCc
Q 004735 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTD 402 (732)
Q Consensus 324 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~ 402 (732)
..+||+++++++..++++........|.|++ +|++|++.+...|...|...++.++. ++.++.....
T Consensus 305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp------------dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~ 372 (425)
T COG0823 305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP------------DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLN 372 (425)
T ss_pred CcceEEECCCCCceeEeeccCCCCcCccCCC------------CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccC
Confidence 9999999999999999996554445889997 89999998865677889999887776 7777765432
Q ss_pred eEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 403 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 403 v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
-.+- ..++..++|... ..+...++.+++.+..
T Consensus 373 e~ps~~~ng~~i~~~s~-~~~~~~l~~~s~~g~~ 405 (425)
T COG0823 373 ESPSWAPNGRMIMFSSG-QGGGSVLSLVSLDGRV 405 (425)
T ss_pred CCCCcCCCCceEEEecc-CCCCceEEEeecccee
Confidence 2222 334444444444 3466678887765543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-17 Score=174.78 Aligned_cols=246 Identities=14% Similarity=0.104 Sum_probs=171.3
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~~ 176 (732)
+.+++|+..+.+......|+.++.++ +..+.++..... .....|++++++|+|....+ .+||++|+.+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg-~~~~~lt~~~~~-------v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-- 237 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG-FNQFIVNRSSQP-------LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-- 237 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC-CCceEeccCCCc-------cccceEcCCCCEEEEEEecCCCcEEEEEeCCC--
Confidence 67888887655433346777776652 234444432201 12345667777899986543 3799999987
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
++.++++... .....++|||||++|++.....+ ..+||++|+++++ .++++.+......|.|||||+
T Consensus 238 g~~~~l~~~~----g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~ 304 (429)
T PRK01742 238 GARKVVASFR----GHNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQ 304 (429)
T ss_pred CceEEEecCC----CccCceeECCCCCEEEEEEecCC------cEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCC
Confidence 7777777542 12346899999999988765332 2579999999888 889988777777899999999
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
+|+|.+. ..+ ..+||.++.. ++.. ..+. .. . ..+.|||||+ |++.+. .+++++|+.++
T Consensus 305 ~i~f~s~-~~g----~~~I~~~~~~-~~~~---~~l~-~~----~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g 363 (429)
T PRK01742 305 SILFTSD-RSG----SPQVYRMSAS-GGGA---SLVG-GR----G--YSAQISADGKTLVMING-----DNVVKQDLTSG 363 (429)
T ss_pred EEEEEEC-CCC----CceEEEEECC-CCCe---EEec-CC----C--CCccCCCCCCEEEEEcC-----CCEEEEECCCC
Confidence 9999873 322 4579998876 4543 2232 21 2 3578999999 777643 24788999999
Q ss_pred eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
+.+.++.. .....+.|++ +++.|++.+.+.+...+++++.+++..+.|+....
T Consensus 364 ~~~~lt~~-~~~~~~~~sP------------dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 364 STEVLSST-FLDESPSISP------------NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred CeEEecCC-CCCCCceECC------------CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence 88877633 2335677776 88889998876666778888888888888875444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=174.30 Aligned_cols=252 Identities=15% Similarity=0.231 Sum_probs=179.9
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~~ 176 (732)
+.+++|+.... ..++..|+..+.++ +..+.++...... ....|++++..|+|..... .+||++++.+
T Consensus 155 ~~~~~~~~~~~-~~~~~~l~~~d~~g-~~~~~l~~~~~~~-------~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-- 223 (417)
T TIGR02800 155 STRIAYVSKSG-KSRRYELQVADYDG-ANPQTITRSREPI-------LSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-- 223 (417)
T ss_pred CCEEEEEEEeC-CCCcceEEEEcCCC-CCCEEeecCCCce-------ecccCCCCCCEEEEEEcCCCCcEEEEEECCC--
Confidence 67788887654 34666788877652 3556665432111 1224666677898886544 4899999987
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
+..++++... .....+.|||||+.|+|.....+ ..+||+++++++. .++++........|.|||||+
T Consensus 224 g~~~~~~~~~----~~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~s~dg~ 290 (417)
T TIGR02800 224 GQREKVASFP----GMNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQ---LTRLTNGPGIDTEPSWSPDGK 290 (417)
T ss_pred CCEEEeecCC----CCccceEECCCCCEEEEEECCCC------CccEEEEECCCCC---EEECCCCCCCCCCEEECCCCC
Confidence 7677766542 12245789999999888765332 2589999999988 788886665566799999999
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
+|+|.+. +.+ ..+||++|++ +++.. ++... . .....+.|+|||+ +++.... .+..+|+.+|+.++
T Consensus 291 ~l~~~s~-~~g----~~~iy~~d~~-~~~~~--~l~~~-~----~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 291 SIAFTSD-RGG----SPQIYMMDAD-GGEVR--RLTFR-G----GYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDGG 356 (417)
T ss_pred EEEEEEC-CCC----CceEEEEECC-CCCEE--EeecC-C----CCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCCC
Confidence 9999873 322 3479999998 66653 22222 2 4556889999999 7777665 57788999999998
Q ss_pred eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
..+.++... ....|.|++ +++.|++.+.+++...||+++.+++..+.++.+..
T Consensus 357 ~~~~l~~~~-~~~~p~~sp------------dg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 357 GERVLTDTG-LDESPSFAP------------NGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred CeEEccCCC-CCCCceECC------------CCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 877776432 334567776 88999999998888899999988877777876543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=158.32 Aligned_cols=219 Identities=20% Similarity=0.238 Sum_probs=160.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHH-CCCEEEEEcCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGY 538 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~~g~ 538 (732)
..+.+..+++ .|..+.+..+.|.. ...+++|+.||. ...-.........+.. .+++++.+||+|.+..
T Consensus 34 ~v~v~~~~t~-rgn~~~~~y~~~~~--------~~~~~lly~hGN--a~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S 102 (258)
T KOG1552|consen 34 FVEVFKVKTS-RGNEIVCMYVRPPE--------AAHPTLLYSHGN--AADLGQMVELFKELSIFLNCNVVSYDYSGYGRS 102 (258)
T ss_pred ccceEEeecC-CCCEEEEEEEcCcc--------ccceEEEEcCCc--ccchHHHHHHHHHHhhcccceEEEEeccccccc
Confidence 3455666676 78889888888864 346899999996 2211111112222333 4899999999987654
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~ 617 (732)
+....+. ..++|+.++.++|.+.++ ..++|+++|+|+|...++.++. .| ..++|+.+|+.+..+.....
T Consensus 103 ~G~psE~-------n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~ 172 (258)
T KOG1552|consen 103 SGKPSER-------NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPD 172 (258)
T ss_pred CCCcccc-------cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccC
Confidence 4332221 348999999999999976 7799999999999999999998 66 99999999999877654431
Q ss_pred chhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcc
Q 004735 618 HKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697 (732)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 697 (732)
.... .++ ..+.-+..+..+++|+|++||++|.+++..+..++++..++ +++..+..|+||.-. +
T Consensus 173 ~~~~-~~~----------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~---~~epl~v~g~gH~~~--~ 236 (258)
T KOG1552|consen 173 TKTT-YCF----------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKE---KVEPLWVKGAGHNDI--E 236 (258)
T ss_pred cceE-Eee----------ccccccCcceeccCCEEEEecccCceecccccHHHHHhccc---cCCCcEEecCCCccc--c
Confidence 1100 111 11222566778889999999999999999999999999886 578889999999743 3
Q ss_pred cHHHHHHHHHHHHHHHhC
Q 004735 698 NIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 698 ~~~~~~~~~~~fl~~~l~ 715 (732)
-..+.++.+..|+....+
T Consensus 237 ~~~~yi~~l~~f~~~~~~ 254 (258)
T KOG1552|consen 237 LYPEYIEHLRRFISSVLP 254 (258)
T ss_pred cCHHHHHHHHHHHHHhcc
Confidence 445777888888877665
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-17 Score=159.16 Aligned_cols=185 Identities=18% Similarity=0.093 Sum_probs=128.9
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCC----CCChhhHHhhccCCCcc-------cHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST----GYGREFRERLLGRWGIV-------DVNDCCS 560 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~----g~g~~~~~~~~~~~~~~-------~~~D~~~ 560 (732)
.+..|+||++||.+.+ ...+......|...++.+..+.++|.. +.+..|.... ...... ..+.+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 3456899999997433 345667778888777655555555521 1233332210 000001 1233445
Q ss_pred HHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcC
Q 004735 561 CATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKS 639 (732)
Q Consensus 561 ~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 639 (732)
.++++.++..++.+||+++|+|+||.+++.++. +|+.+.+++++++.... . +
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~-----------------~---~------- 142 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS-----------------L---P------- 142 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc-----------------c---c-------
Confidence 667777777788899999999999999999887 88888888887764210 0 0
Q ss_pred ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 640 PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 640 p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
......+|+|++||++|+++|++.++++.+.|++.|.++++++|++++|.+.. +.++.+.+||.++|
T Consensus 143 ---~~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l 209 (232)
T PRK11460 143 ---ETAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTV 209 (232)
T ss_pred ---ccccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHc
Confidence 01123689999999999999999999999999999999999999999998853 44555556665554
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-16 Score=177.75 Aligned_cols=207 Identities=19% Similarity=0.226 Sum_probs=153.9
Q ss_pred HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc---------------CCCCCCcEEEE
Q 004735 515 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---------------GKADEKRLCIT 579 (732)
Q Consensus 515 ~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---------------~~~d~~ri~i~ 579 (732)
...++|+.+||+|+.+|.||.+++...+. .++..+.+|..++|+|+..+ .+. ..||+++
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~ 343 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMT 343 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEE
Confidence 35688999999999999999877544331 23345689999999999853 333 4799999
Q ss_pred EcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc------hh-------hhh---------------------h
Q 004735 580 GGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH------KF-------ESR---------------------Y 624 (732)
Q Consensus 580 G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~------~~-------~~~---------------------~ 624 (732)
|.||||++++.+++ .|+.++++|+.+++.++..++.... .+ ... +
T Consensus 344 G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~ 423 (767)
T PRK05371 344 GKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKL 423 (767)
T ss_pred EEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHH
Confidence 99999999998888 8899999999999988765432210 00 000 0
Q ss_pred hhhhc-------C-ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc
Q 004735 625 IDNLV-------G-SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 696 (732)
Q Consensus 625 ~~~~~-------~-~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 696 (732)
+..+. + ..+.|...+++.+++++++|+|++||.+|..+++.++.++++++++.+++.++.+.++ +|.....
T Consensus 424 ~~~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~ 502 (767)
T PRK05371 424 LAELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNN 502 (767)
T ss_pred HhhhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCc
Confidence 00000 0 1235566778888999999999999999999999999999999999888888877654 6865544
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCCC-CCCCcccc
Q 004735 697 ENIKFTLEQQMVFFARVVGHFDVA-DEIIPIKI 728 (732)
Q Consensus 697 ~~~~~~~~~~~~fl~~~l~~~~~~-~~~~~~~~ 728 (732)
....++.+.+++||+++|++..+. +..|++.+
T Consensus 503 ~~~~d~~e~~~~Wfd~~LkG~~ng~~~~~pv~i 535 (767)
T PRK05371 503 WQSIDFRDTMNAWFTHKLLGIDNGVENELPAVI 535 (767)
T ss_pred hhHHHHHHHHHHHHHhccccCCCCcccCCcceE
Confidence 456678899999999999875543 23345544
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=162.39 Aligned_cols=235 Identities=17% Similarity=0.217 Sum_probs=158.9
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
.+..+.+. +|..+....+.+.. .+..+||++||. ......+...+..|..+||.|+++|.||.|.+.+
T Consensus 10 ~~~~~~~~-d~~~~~~~~~~~~~--------~~~g~Vvl~HG~--~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r- 77 (298)
T COG2267 10 TEGYFTGA-DGTRLRYRTWAAPE--------PPKGVVVLVHGL--GEHSGRYEELADDLAARGFDVYALDLRGHGRSPR- 77 (298)
T ss_pred ccceeecC-CCceEEEEeecCCC--------CCCcEEEEecCc--hHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCC-
Confidence 44566666 89999999888764 223899999998 5555667778999999999999999998776543
Q ss_pred hHHhhccCCCc--ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH--HHhh
Q 004735 542 FRERLLGRWGI--VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--LRAE 616 (732)
Q Consensus 542 ~~~~~~~~~~~--~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~--~~~~ 616 (732)
...+.... .-+.|+.+.++.+... .-..+++|+||||||.+++.++. ++..++++|+.+|...+.. ....
T Consensus 78 ---~~rg~~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~ 152 (298)
T COG2267 78 ---GQRGHVDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLI 152 (298)
T ss_pred ---CCcCCchhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHH
Confidence 11111111 1134444455554433 12478999999999999999998 8899999999999887662 1110
Q ss_pred cch--------hhhhh-hh-----hhc----C-Chh--hhhhcCc-----------------------cccCCCCCCCEE
Q 004735 617 THK--------FESRY-ID-----NLV----G-SEK--DYYEKSP-----------------------INFVDKFSCPII 652 (732)
Q Consensus 617 ~~~--------~~~~~-~~-----~~~----~-~~~--~~~~~sp-----------------------~~~~~~i~~P~L 652 (732)
... +...+ .. ... . +++ .....+| ......+++|+|
T Consensus 153 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvL 232 (298)
T COG2267 153 LARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVL 232 (298)
T ss_pred HHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEE
Confidence 000 00000 00 000 0 110 0011112 112456789999
Q ss_pred EEEeCCCCccC-hHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHHhC
Q 004735 653 LFQGLEDKVVP-PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI--KFTLEQQMVFFARVVG 715 (732)
Q Consensus 653 ii~G~~D~~v~-~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~--~~~~~~~~~fl~~~l~ 715 (732)
+++|++|.+++ .+...++++.+... ++++++++|+.|....+... +++++.+.+|+.+.+.
T Consensus 233 ll~g~~D~vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 233 LLQGGDDRVVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred EEecCCCccccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 99999999999 67777777765543 36999999999998777776 8999999999998775
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-17 Score=146.61 Aligned_cols=231 Identities=19% Similarity=0.231 Sum_probs=168.9
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
..-+.+++.++ |..++++|+...+ ...|+++++|+..+.. +.......-++...++.|+.++|||.+..
T Consensus 52 ~pye~i~l~T~-D~vtL~a~~~~~E---------~S~pTlLyfh~NAGNm-Ghr~~i~~~fy~~l~mnv~ivsYRGYG~S 120 (300)
T KOG4391|consen 52 MPYERIELRTR-DKVTLDAYLMLSE---------SSRPTLLYFHANAGNM-GHRLPIARVFYVNLKMNVLIVSYRGYGKS 120 (300)
T ss_pred CCceEEEEEcC-cceeEeeeeeccc---------CCCceEEEEccCCCcc-cchhhHHHHHHHHcCceEEEEEeeccccC
Confidence 45688999998 9999999998732 3679999999963332 22333334456778999999999975543
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh-
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE- 616 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~- 616 (732)
..+..+. |. .-|..++++||..++..|..+++++|.|.||.+|..+++ ..+++.|+++-..+..+..+...
T Consensus 121 ~GspsE~-----GL--~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~ 193 (300)
T KOG4391|consen 121 EGSPSEE-----GL--KLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPL 193 (300)
T ss_pred CCCcccc-----ce--eccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhhe
Confidence 2221111 11 568899999999999999999999999999999999998 88899999999988887544322
Q ss_pred cchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc
Q 004735 617 THKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 696 (732)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 696 (732)
...+...++..+. -+.. +.....+.+-+.|.|++.|.+|.+||+-+.+++++..... ..++..||++.|+-..
T Consensus 194 v~p~~~k~i~~lc-~kn~---~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT~- 266 (300)
T KOG4391|consen 194 VFPFPMKYIPLLC-YKNK---WLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDTW- 266 (300)
T ss_pred eccchhhHHHHHH-HHhh---hcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCceE-
Confidence 2233333333222 1112 2233345566789999999999999999999999987665 3489999999997322
Q ss_pred ccHHHHHHHHHHHHHHHhC
Q 004735 697 ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 697 ~~~~~~~~~~~~fl~~~l~ 715 (732)
..+-.++.+.+|+.+...
T Consensus 267 -i~dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 267 -ICDGYFQAIEDFLAEVVK 284 (300)
T ss_pred -EeccHHHHHHHHHHHhcc
Confidence 234678888999988776
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-16 Score=164.65 Aligned_cols=207 Identities=17% Similarity=0.286 Sum_probs=153.1
Q ss_pred eeEEECCEEEEEeCCC---CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 149 AFRIFGDTVIFSNYKD---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~---~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.|+.++..+.|..... .++|++++++ +...++... ......|+|||||++|+|+..+.+ ..+||+
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--g~~~~i~~~----~g~~~~P~fspDG~~l~f~~~rdg------~~~iy~ 266 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNT--GKRPVILNF----NGNNGAPAFSPDGSKLAFSSSRDG------SPDIYL 266 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccC--Cccceeecc----CCccCCccCCCCCCEEEEEECCCC------CccEEE
Confidence 3555566766664433 3699999998 555555543 233467899999999999987653 379999
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
+|+.++. .++|+...+....|.|||||++|+|++ ++.+ ..+||+++++ ++..++++ ... +....
T Consensus 267 ~dl~~~~---~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G----~p~I~~~~~~-g~~~~riT--~~~-----~~~~~ 330 (425)
T COG0823 267 MDLDGKN---LPRLTNGFGINTSPSWSPDGSKIVFTS-DRGG----RPQIYLYDLE-GSQVTRLT--FSG-----GGNSN 330 (425)
T ss_pred EcCCCCc---ceecccCCccccCccCCCCCCEEEEEe-CCCC----CcceEEECCC-CCceeEee--ccC-----CCCcC
Confidence 9999998 788998888888999999999999998 6655 3479999998 55553222 222 23348
Q ss_pred ceeCCCCc-EEEEEeccCCeeeEEEEeccCCe-EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEE
Q 004735 306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (732)
Q Consensus 306 ~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~l 383 (732)
|.|||||+ |+|.... .|.+++...++.++. .+.++ .......|.|.+ +++.+++.+...+...|
T Consensus 331 p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~------------ng~~i~~~s~~~~~~~l 396 (425)
T COG0823 331 PVWSPDGDKIVFESSS-GGQWDIDKNDLASGGKIRILT-STYLNESPSWAP------------NGRMIMFSSGQGGGSVL 396 (425)
T ss_pred ccCCCCCCEEEEEecc-CCceeeEEeccCCCCcEEEcc-ccccCCCCCcCC------------CCceEEEeccCCCCceE
Confidence 99999999 8888754 677889999988776 55554 333445788876 88888888887788889
Q ss_pred EEEECCCCceEEec
Q 004735 384 GILDDFGHSLSLLD 397 (732)
Q Consensus 384 y~~~~~~~~~~~lt 397 (732)
+.++..+...+.+.
T Consensus 397 ~~~s~~g~~~~~~~ 410 (425)
T COG0823 397 SLVSLDGRVSRPLP 410 (425)
T ss_pred EEeeccceeEEEEe
Confidence 98887766555443
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=154.48 Aligned_cols=234 Identities=22% Similarity=0.300 Sum_probs=162.3
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
-.++|++. .|.+|.+|+..|.. +++++|+||-.||..++.. .+. -.-.|+..||+|+.+|.||.+++..+
T Consensus 57 ydvTf~g~-~g~rI~gwlvlP~~------~~~~~P~vV~fhGY~g~~g--~~~-~~l~wa~~Gyavf~MdvRGQg~~~~d 126 (321)
T COG3458 57 YDVTFTGY-GGARIKGWLVLPRH------EKGKLPAVVQFHGYGGRGG--EWH-DMLHWAVAGYAVFVMDVRGQGSSSQD 126 (321)
T ss_pred EEEEEecc-CCceEEEEEEeecc------cCCccceEEEEeeccCCCC--Ccc-ccccccccceeEEEEecccCCCcccc
Confidence 35788887 99999999999987 3588999999999744432 221 23457899999999999998776331
Q ss_pred hHHhhcc-----C--CCcc----------cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEee
Q 004735 542 FRERLLG-----R--WGIV----------DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASL 604 (732)
Q Consensus 542 ~~~~~~~-----~--~~~~----------~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~ 604 (732)
-.....+ . .|.. .+.|+..+++-+.+...+|.+||++.|.|.||.+++.+++...+++++++.
T Consensus 127 t~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~rik~~~~~ 206 (321)
T COG3458 127 TADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKAVVAD 206 (321)
T ss_pred CCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChhhhccccc
Confidence 1110000 0 0111 278999999999999999999999999999999999999977789999999
Q ss_pred cCcC-CHHHHHhh--cchhh--hhhhhhhcC-Ch---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHH
Q 004735 605 YGVA-DLSMLRAE--THKFE--SRYIDNLVG-SE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 675 (732)
Q Consensus 605 ~~~~-d~~~~~~~--~~~~~--~~~~~~~~~-~~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~ 675 (732)
.|+. |+...... ...+. ..|+...-. +. +.+.-.+..+.+.++++|+|+..|-.|++||+.....+++++.
T Consensus 207 ~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~ 286 (321)
T COG3458 207 YPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALT 286 (321)
T ss_pred ccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhccc
Confidence 9975 33332111 00110 111111110 11 2233345567788999999999999999999999999999987
Q ss_pred hCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 676 ENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 676 ~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
. +.++.+|+.-+|.-.. .-..+.+..|++.
T Consensus 287 ~---~K~i~iy~~~aHe~~p----~~~~~~~~~~l~~ 316 (321)
T COG3458 287 T---SKTIEIYPYFAHEGGP----GFQSRQQVHFLKI 316 (321)
T ss_pred C---CceEEEeeccccccCc----chhHHHHHHHHHh
Confidence 5 4578888877785321 1223345566554
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=163.33 Aligned_cols=236 Identities=15% Similarity=0.108 Sum_probs=147.0
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhh
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~ 542 (732)
...+... ||..+......... .....|+||++||.++..........+..|.++||.|+++|+||.++.....
T Consensus 33 ~~~~~~~-dg~~~~l~w~~~~~------~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~ 105 (324)
T PRK10985 33 WQRLELP-DGDFVDLAWSEDPA------QARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL 105 (324)
T ss_pred eeEEECC-CCCEEEEecCCCCc------cCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC
Confidence 3445666 78777644332111 1345699999999865443333445678899999999999999976543211
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEeecCcCCHHHHHhhc--
Q 004735 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYGVADLSMLRAET-- 617 (732)
Q Consensus 543 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~~~~~d~~~~~~~~-- 617 (732)
.. .+.....+|+.++++++.++.. ..+++++|||+||.+++.++. +++ .+++++++++..++.......
T Consensus 106 ~~----~~~~~~~~D~~~~i~~l~~~~~--~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~ 179 (324)
T PRK10985 106 HR----IYHSGETEDARFFLRWLQREFG--HVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQ 179 (324)
T ss_pred cc----eECCCchHHHHHHHHHHHHhCC--CCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhh
Confidence 11 1112347899999999988643 468999999999998777766 543 388888888877643211000
Q ss_pred --chhhhh---------h---hhh-----------h------------c-----C--C-hhhhhhcCccccCCCCCCCEE
Q 004735 618 --HKFESR---------Y---IDN-----------L------------V-----G--S-EKDYYEKSPINFVDKFSCPII 652 (732)
Q Consensus 618 --~~~~~~---------~---~~~-----------~------------~-----~--~-~~~~~~~sp~~~~~~i~~P~L 652 (732)
..+... . ... . + + . .+.|...+....++++++|+|
T Consensus 180 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P~l 259 (324)
T PRK10985 180 GFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIRKPTL 259 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCCCCEE
Confidence 000000 0 000 0 0 0 1 123334445556788999999
Q ss_pred EEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHhC
Q 004735 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 715 (732)
+++|++|++++++....+.+ ...++++++++++||..... .......+.+.+||+.++.
T Consensus 260 ii~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 322 (324)
T PRK10985 260 IIHAKDDPFMTHEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYLE 322 (324)
T ss_pred EEecCCCCCCChhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhhc
Confidence 99999999998766555432 22367899999999953211 1123445667888877664
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=155.68 Aligned_cols=191 Identities=17% Similarity=0.116 Sum_probs=123.3
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHHCCCEEEEEcCCCCCCCChhh--HHhhccCCCcc
Q 004735 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTGYGREF--RERLLGRWGIV 553 (732)
Q Consensus 477 ~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rG~~g~g~~~--~~~~~~~~~~~ 553 (732)
+++|.|++. .++.|+||++||+++....... ..+.+.+.+.||.|++||++|.++.+..+ ........+..
T Consensus 1 ~~ly~P~~~------~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~ 74 (212)
T TIGR01840 1 MYVYVPAGL------TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTG 74 (212)
T ss_pred CEEEcCCCC------CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCc
Confidence 368889762 4568999999998654332211 11345555679999999999875433211 11111112334
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCCh
Q 004735 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSE 632 (732)
Q Consensus 554 ~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 632 (732)
+..|+...++++.++..+|++||+|+|||+||++++.++. +|+++.+++++++......-.. .... ... ......
T Consensus 75 ~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~-~~~~-~~~--~~~~~~ 150 (212)
T TIGR01840 75 EVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSS-ISAT-PQM--CTAATA 150 (212)
T ss_pred cHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccc-hhhH-hhc--CCCCCH
Confidence 5788999999999988899999999999999999999988 9999999999887642111000 0000 000 000001
Q ss_pred hhhhhc-Cc-cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 633 KDYYEK-SP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 633 ~~~~~~-sp-~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
..+.+. .. .........|++++||++|.+||++.++++++++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 151 ASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHHHHHhccCCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 111110 00 1112233456789999999999999999999999985
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-16 Score=163.55 Aligned_cols=240 Identities=15% Similarity=0.144 Sum_probs=150.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+...+... ||..+....+.+.... .....|+||++||..++.....+...+..+.++||.|+++|+||.++....
T Consensus 72 ~re~l~~~-DG~~~~ldw~~~~~~~----~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~ 146 (388)
T PLN02511 72 RRECLRTP-DGGAVALDWVSGDDRA----LPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT 146 (388)
T ss_pred eEEEEECC-CCCEEEEEecCccccc----CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 44566676 8888876554432110 123468999999975543322233455667789999999999998764321
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCc--ceEEEeecCcCCHHHHH----
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDT--FKAGASLYGVADLSMLR---- 614 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~--~~a~v~~~~~~d~~~~~---- 614 (732)
. ...+.....+|+.++++++..+. ...++.++|||+||.+++.++. ++++ +.+++++++..++....
T Consensus 147 ~----~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~ 220 (388)
T PLN02511 147 T----PQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFH 220 (388)
T ss_pred C----cCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHh
Confidence 0 11122244789999999998764 2468999999999999999888 8876 78888777765542100
Q ss_pred h------------hcchhhhh---hhh---------------------h-----hcC--C-hhhhhhcCccccCCCCCCC
Q 004735 615 A------------ETHKFESR---YID---------------------N-----LVG--S-EKDYYEKSPINFVDKFSCP 650 (732)
Q Consensus 615 ~------------~~~~~~~~---~~~---------------------~-----~~~--~-~~~~~~~sp~~~~~~i~~P 650 (732)
. ........ .+. . ..+ + .+.|...++...+.+|++|
T Consensus 221 ~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I~vP 300 (388)
T PLN02511 221 KGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHVRVP 300 (388)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccCCCC
Confidence 0 00000000 000 0 000 1 1234455667778899999
Q ss_pred EEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--cccH---HHHHHHHHHHHHHHhC
Q 004735 651 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AENI---KFTLEQQMVFFARVVG 715 (732)
Q Consensus 651 ~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~~---~~~~~~~~~fl~~~l~ 715 (732)
+|+|+|++|+++|...... .+.+...++++++++++||.... ++.. ....+.+.+||+....
T Consensus 301 tLiI~g~dDpi~p~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~~ 367 (388)
T PLN02511 301 LLCIQAANDPIAPARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALEE 367 (388)
T ss_pred eEEEEcCCCCcCCcccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999998754321 11223346899999999996322 1110 1246778888887765
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=159.29 Aligned_cols=223 Identities=22% Similarity=0.262 Sum_probs=157.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc--HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhcc
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 548 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~--~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~ 548 (732)
.+..+.+.+|.|... .....|+||++|||++........ .....+...|+.|+.+|||-.+.+...
T Consensus 60 ~~~~~~~~~y~p~~~-----~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~~p------- 127 (312)
T COG0657 60 SGDGVPVRVYRPDRK-----AAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHPFP------- 127 (312)
T ss_pred CCCceeEEEECCCCC-----CCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCCCC-------
Confidence 556677899999210 245689999999998765554433 456667778999999999977764211
Q ss_pred CCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh--CC---CcceEEEeecCcCCHHH----HHhh
Q 004735 549 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA--FR---DTFKAGASLYGVADLSM----LRAE 616 (732)
Q Consensus 549 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~--~p---~~~~a~v~~~~~~d~~~----~~~~ 616 (732)
..++|+.+++.|+.++ ..+|+++|+++|+|.||++++.++. .. ....+.++++|..|... +...
T Consensus 128 ----~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~~~ 203 (312)
T COG0657 128 ----AALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGY 203 (312)
T ss_pred ----chHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchhhc
Confidence 3478999999999876 4689999999999999999998886 32 26789999999988765 0000
Q ss_pred c-------chhhhhhhhhhcCChhhh--hhcCccccC--CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 617 T-------HKFESRYIDNLVGSEKDY--YEKSPINFV--DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 617 ~-------~~~~~~~~~~~~~~~~~~--~~~sp~~~~--~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
. ......+...+.+..... ...+|+... .. -.|+++++|+.|.+.+ +++.+.++|++.|++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~ 280 (312)
T COG0657 204 GEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRV 280 (312)
T ss_pred CCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEE
Confidence 0 000112222222211111 234554433 33 4789999999998866 89999999999999999999
Q ss_pred eCCCCccCC--CcccHHHHHHHHHHHHHH
Q 004735 686 YEGEQHGFR--KAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 686 ~~~~gH~~~--~~~~~~~~~~~~~~fl~~ 712 (732)
+++..|+|. ......+.+..+.+|+..
T Consensus 281 ~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 281 YPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred eCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 999999983 323344456667777663
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=169.52 Aligned_cols=245 Identities=17% Similarity=0.148 Sum_probs=157.0
Q ss_pred eccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc--CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH
Q 004735 467 PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 467 ~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~--~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~ 544 (732)
+.. ||.++++.+|.|.. .++.|+||++||...... ........+.|+++||+|+++|+||.+++...+..
T Consensus 2 ~~~-DG~~L~~~~~~P~~-------~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~ 73 (550)
T TIGR00976 2 PMR-DGTRLAIDVYRPAG-------GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDL 73 (550)
T ss_pred cCC-CCCEEEEEEEecCC-------CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEe
Confidence 345 89999999999975 457899999999743321 01112245678999999999999998765443211
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchh---
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF--- 620 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~--- 620 (732)
++....+|+.++++|+.+++..+ .+|+++|+|+||++++.++. +|+.++++++.++..++.........+
T Consensus 74 -----~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~~g~~~~~ 147 (550)
T TIGR00976 74 -----LGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAFPGALRLD 147 (550)
T ss_pred -----cCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhccCCeeccc
Confidence 12356899999999999987766 79999999999999999988 889999999999887755321000000
Q ss_pred -hhhhhhh----------------------hcC---C----------------------------h---hhhhhcCcccc
Q 004735 621 -ESRYIDN----------------------LVG---S----------------------------E---KDYYEKSPINF 643 (732)
Q Consensus 621 -~~~~~~~----------------------~~~---~----------------------------~---~~~~~~sp~~~ 643 (732)
...++.. ... . . +.+...+....
T Consensus 148 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 227 (550)
T TIGR00976 148 VLLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWVSISLWRD 227 (550)
T ss_pred hhHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhccCchhhH
Confidence 0000000 000 0 0 01111222234
Q ss_pred CCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--------cccHHHHHH--HHHHHHHHH
Q 004735 644 VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--------AENIKFTLE--QQMVFFARV 713 (732)
Q Consensus 644 ~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--------~~~~~~~~~--~~~~fl~~~ 713 (732)
+.++++|+|++.|-.|. ....+.+.++.+.+.+ +.++++-| ..|.... ......... ..++||+++
T Consensus 228 ~~~i~vP~l~~~gw~D~--~~~g~~~~~~~~~~~~-~~~lilGp-w~H~~~~~~~~~~~~g~~~~~~~~~~~~~~wfD~~ 303 (550)
T TIGR00976 228 LGGSDVPTLVTGGWYDN--HSRGSIRLFLAVHRGG-AQRLVVGP-WTHSGLGGRVGDGNYGMAALSWVDEAEQLAFFDRH 303 (550)
T ss_pred hcCCCCCEEEeCcccCC--CCchHHHHHHHHhhcC-CceEEEcc-CCCCCcccccCCCccCccccccchhhhhHHHHHHH
Confidence 56789999999999994 4456667777776654 45666544 3575110 000011111 468999999
Q ss_pred hCCCCCC-CCCCccccc
Q 004735 714 VGHFDVA-DEIIPIKID 729 (732)
Q Consensus 714 l~~~~~~-~~~~~~~~~ 729 (732)
|++..+. +..|++.+.
T Consensus 304 Lkg~~~g~~~~p~v~~~ 320 (550)
T TIGR00976 304 LKGGTTGVRSEPKVRLF 320 (550)
T ss_pred hCCCCCCCCCCCceEEE
Confidence 9975443 334566554
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=148.12 Aligned_cols=233 Identities=20% Similarity=0.234 Sum_probs=155.3
Q ss_pred EeeccCCCeE-EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhH
Q 004735 465 EFPTEVPGQK-AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543 (732)
Q Consensus 465 ~~~~~~~g~~-i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~ 543 (732)
.+..+ +|.. ...|...|. ....|+||++||.-++........+...+..+||.|+++|.||+++......
T Consensus 53 ~v~~p-dg~~~~ldw~~~p~--------~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p 123 (345)
T COG0429 53 RLETP-DGGFIDLDWSEDPR--------AAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSP 123 (345)
T ss_pred EEEcC-CCCEEEEeeccCcc--------ccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCc
Confidence 44555 5554 455555454 3456999999997666666666678888999999999999999887433211
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHH-HHHHHHHh--CCCcceEEEeecCcCCHHHHHhhc---
Q 004735 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG-YTTLAALA--FRDTFKAGASLYGVADLSMLRAET--- 617 (732)
Q Consensus 544 ~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG-~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~~~~--- 617 (732)
.-+.....+|+...++++.+... +.++..+|.|+|| +++.+++. ....+.+++.++..+|+.......
T Consensus 124 ----~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~ 197 (345)
T COG0429 124 ----RLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSG 197 (345)
T ss_pred ----ceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCc
Confidence 11222346999999999988643 6799999999999 66666665 333567777766655543211000
Q ss_pred -c-hhhhhh---------------------------h---------hh-----hcC--C-hhhhhhcCccccCCCCCCCE
Q 004735 618 -H-KFESRY---------------------------I---------DN-----LVG--S-EKDYYEKSPINFVDKFSCPI 651 (732)
Q Consensus 618 -~-~~~~~~---------------------------~---------~~-----~~~--~-~~~~~~~sp~~~~~~i~~P~ 651 (732)
. .+..++ + +. ..| + .+.|+..|.+..+.+|.+|+
T Consensus 198 ~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~Ir~Pt 277 (345)
T COG0429 198 FSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKIRKPT 277 (345)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccccccce
Confidence 0 000000 0 00 001 2 36778889999999999999
Q ss_pred EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc-CCC-cc-cH-HHHHHHHHHHHHHHhC
Q 004735 652 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-FRK-AE-NI-KFTLEQQMVFFARVVG 715 (732)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~~~-~~-~~-~~~~~~~~~fl~~~l~ 715 (732)
||||+.+|+++++...-+.... .+..+.+.+.+.+||. |.. .. .. ....+++.+||+.++.
T Consensus 278 Lii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 278 LIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred EEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 9999999999987554433222 4567899999999994 322 11 11 2456789999998875
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=152.81 Aligned_cols=201 Identities=14% Similarity=0.156 Sum_probs=128.5
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|+||++||.+.. ...|...+..+. +||.|+++|+||.+...... . .....+|..+.+..+++. .+.
T Consensus 12 ~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~----~---~~~~~~~~~~~~~~~i~~--~~~ 79 (257)
T TIGR03611 12 DAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRGTGRSPGEL----P---PGYSIAHMADDVLQLLDA--LNI 79 (257)
T ss_pred CCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCCCCCCCCCC----c---ccCCHHHHHHHHHHHHHH--hCC
Confidence 46889999998443 344555555554 57999999999876543221 1 112344544444444443 235
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh----hc---------chh---------hhhhhhhhc-
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA----ET---------HKF---------ESRYIDNLV- 629 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~----~~---------~~~---------~~~~~~~~~- 629 (732)
+++.++|||+||++++.++. +|++++++|++++......... .. ..+ ...++....
T Consensus 80 ~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (257)
T TIGR03611 80 ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENAA 159 (257)
T ss_pred CcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccch
Confidence 68999999999999999988 8999999999887543211000 00 000 000000000
Q ss_pred --------------CCh------hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004735 630 --------------GSE------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689 (732)
Q Consensus 630 --------------~~~------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (732)
+.. ..+...+....++++++|+|+++|++|..+|+++++++++.++ +.++++++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~ 235 (257)
T TIGR03611 160 RLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALP----NAQLKLLPYG 235 (257)
T ss_pred hhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcC----CceEEEECCC
Confidence 000 0011122234467789999999999999999999888877664 4578899999
Q ss_pred CccCCCcccHHHHHHHHHHHHH
Q 004735 690 QHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 690 gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
||.+. .++.+++.+.+.+||+
T Consensus 236 gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 236 GHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred CCCcc-ccCHHHHHHHHHHHhc
Confidence 99754 3567778888888875
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=154.66 Aligned_cols=202 Identities=14% Similarity=0.133 Sum_probs=125.8
Q ss_pred CEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
|.||++||.+.....+. +......+.+.||.|+++|+||.+...... ..........+|+.+.++.+ +.+
T Consensus 31 ~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~---~~~~~~~~~~~~l~~~l~~l------~~~ 101 (282)
T TIGR03343 31 EAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVV---MDEQRGLVNARAVKGLMDAL------DIE 101 (282)
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCc---CcccccchhHHHHHHHHHHc------CCC
Confidence 67999999754433222 112345567789999999999865432210 00011112244555544443 457
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH------------HHHhhc----chhhhhhhh-----------
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------------MLRAET----HKFESRYID----------- 626 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~------------~~~~~~----~~~~~~~~~----------- 626 (732)
++.++|||+||.+++.++. +|++++++|++++..... .+.... ......++.
T Consensus 102 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (282)
T TIGR03343 102 KAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLITE 181 (282)
T ss_pred CeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCcH
Confidence 9999999999999999998 999999999988642100 000000 000000000
Q ss_pred --------hhcCChh---hhh---------hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe
Q 004735 627 --------NLVGSEK---DYY---------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 686 (732)
Q Consensus 627 --------~~~~~~~---~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (732)
.....+. .+. ..+....+.++++|+|+++|++|.+++++.++++.+.++ +++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~i 257 (282)
T TIGR03343 182 ELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHVF 257 (282)
T ss_pred HHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEEe
Confidence 0000011 000 011122356789999999999999999988888877664 5689999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHH
Q 004735 687 EGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 687 ~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+++||.. ..+....+.+.+.+|+.
T Consensus 258 ~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 258 SRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred CCCCcCC-cccCHHHHHHHHHHHhh
Confidence 9999975 44777888888888885
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.4e-15 Score=148.81 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=144.9
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC--cccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~--~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+.+.|.. +|..+.++++.|.+ . ..+.||++|||+...... .+..+++.|+++||.|+++|+||.+...
T Consensus 3 ~~~~~~~--~~~~l~g~~~~p~~-------~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~ 72 (274)
T TIGR03100 3 RALTFSC--EGETLVGVLHIPGA-------S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSE 72 (274)
T ss_pred eeEEEEc--CCcEEEEEEEcCCC-------C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence 4577776 58889999999965 2 245777788875433222 2345678899999999999999766432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHH-----HH
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSM-----LR 614 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~-----~~ 614 (732)
... ..+. ...+|+.++++++.++.. ..++|+++|||+||++++.++.++.+++++|+.+|...... ..
T Consensus 73 ~~~-----~~~~-~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~~~v~~lil~~p~~~~~~~~~~~~~ 145 (274)
T TIGR03100 73 GEN-----LGFE-GIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPADLRVAGLVLLNPWVRTEAAQAASRI 145 (274)
T ss_pred CCC-----CCHH-HHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhCCCccEEEEECCccCCcccchHHHH
Confidence 110 0111 125789999999987521 23679999999999999988776678999999998753111 00
Q ss_pred hhc---chhhhhhhhhhc-CC------hhhhhh----c---Cc-----------cccCCCCCCCEEEEEeCCCCccChHH
Q 004735 615 AET---HKFESRYIDNLV-GS------EKDYYE----K---SP-----------INFVDKFSCPIILFQGLEDKVVPPDQ 666 (732)
Q Consensus 615 ~~~---~~~~~~~~~~~~-~~------~~~~~~----~---sp-----------~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (732)
... ......++..++ +. ...+.. . .+ ...+.++++|+|+++|..|...+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~ 225 (274)
T TIGR03100 146 RHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFA 225 (274)
T ss_pred HHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHH
Confidence 000 000001111111 10 000100 1 00 12244678999999999998742111
Q ss_pred H-----HHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 667 A-----RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 667 ~-----~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
. ....+.+.. ..++++++++++|.+.......++.+.+.+||+
T Consensus 226 ~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 226 DSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred HHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 0 222222322 367899999999977677777889999999985
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=149.40 Aligned_cols=183 Identities=23% Similarity=0.291 Sum_probs=122.9
Q ss_pred EEEEcCCCCCccCCccc-HHHHHHHH-CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCC
Q 004735 498 LVKSHGGPTSEARGILN-LSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKAD 572 (732)
Q Consensus 498 vl~~HGg~~~~~~~~~~-~~~~~l~~-~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d 572 (732)
||++|||++........ .....+++ .|+.|+.+|||-++...- ...++|+.++++|+.++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~~~-----------p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEAPF-----------PAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTSST-----------THHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccccc-----------cccccccccceeeecccccccccc
Confidence 78999998775554433 34555554 899999999996554211 13489999999999987 4578
Q ss_pred CCcEEEEEcChHHHHHHHHHh---CC--CcceEEEeecCcCCH-H----HHH---hhcc-hh-----hhhhhhhhcC-Ch
Q 004735 573 EKRLCITGGSAGGYTTLAALA---FR--DTFKAGASLYGVADL-S----MLR---AETH-KF-----ESRYIDNLVG-SE 632 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~---~p--~~~~a~v~~~~~~d~-~----~~~---~~~~-~~-----~~~~~~~~~~-~~ 632 (732)
+++|+|+|+|.||.+++.++. .. ..++++++++|+.|+ . ... .... .+ ...+.....+ ..
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYLPGSD 149 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHHSTGG
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccccccc
Confidence 999999999999999998886 22 358999999999876 1 110 0000 00 0011111111 11
Q ss_pred hhhhhcCccccCCCC--CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004735 633 KDYYEKSPINFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 694 (732)
Q Consensus 633 ~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 694 (732)
......+|+.. ..+ -+|+++++|+.|.. ..++..++++|++.|++++++++++.+|.|.
T Consensus 150 ~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l--~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 150 RDDPLASPLNA-SDLKGLPPTLIIHGEDDVL--VDDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp TTSTTTSGGGS-SCCTTCHEEEEEEETTSTT--HHHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred ccccccccccc-cccccCCCeeeeccccccc--hHHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 12234556654 123 36899999999976 4688999999999999999999999999874
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=154.81 Aligned_cols=233 Identities=18% Similarity=0.178 Sum_probs=143.1
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC--------------------c---c-cHHHHHHH
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--------------------I---L-NLSIQYWT 521 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~--------------------~---~-~~~~~~l~ 521 (732)
|.+. +|..++...|.|.+ +..+|+++||........ . + ..+++.|.
T Consensus 2 ~~~~-~g~~l~~~~~~~~~---------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~ 71 (332)
T TIGR01607 2 FRNK-DGLLLKTYSWIVKN---------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFN 71 (332)
T ss_pred ccCC-CCCeEEEeeeeccC---------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHH
Confidence 4455 88899988888743 347999999964333211 1 1 24688999
Q ss_pred HCCCEEEEEcCCCCCCCChhhHHhhc-cCCCcccHHHHHHHHHHHHhc------------------CCCCCCcEEEEEcC
Q 004735 522 SRGWAFVDVNYGGSTGYGREFRERLL-GRWGIVDVNDCCSCATFLVGS------------------GKADEKRLCITGGS 582 (732)
Q Consensus 522 ~~G~~v~~~d~rG~~g~g~~~~~~~~-~~~~~~~~~D~~~~i~~l~~~------------------~~~d~~ri~i~G~S 582 (732)
++||.|+++|.||.+.....-..... ..|. .-++|+...++.+.+. ..-...+++|+|||
T Consensus 72 ~~G~~V~~~D~rGHG~S~~~~~~~g~~~~~~-~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhS 150 (332)
T TIGR01607 72 KNGYSVYGLDLQGHGESDGLQNLRGHINCFD-DLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLS 150 (332)
T ss_pred HCCCcEEEecccccCCCccccccccchhhHH-HHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeecc
Confidence 99999999999987653221000000 1110 1256777777766541 01113579999999
Q ss_pred hHHHHHHHHHh-CCC--------cceEEEeecCcCCHHH-----------HHhhcchhhhhhhhhh-------c-CCh--
Q 004735 583 AGGYTTLAALA-FRD--------TFKAGASLYGVADLSM-----------LRAETHKFESRYIDNL-------V-GSE-- 632 (732)
Q Consensus 583 ~GG~~a~~~~~-~p~--------~~~a~v~~~~~~d~~~-----------~~~~~~~~~~~~~~~~-------~-~~~-- 632 (732)
|||.+++.++. +++ .++++|+.+|...+.. .....-.....+...+ . .++
T Consensus 151 mGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~ 230 (332)
T TIGR01607 151 MGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYV 230 (332)
T ss_pred CccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhh
Confidence 99999998875 432 5888988887643211 0000000000000000 0 000
Q ss_pred hhhhhcCc----------------------cccCCCC--CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC
Q 004735 633 KDYYEKSP----------------------INFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 688 (732)
Q Consensus 633 ~~~~~~sp----------------------~~~~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (732)
......+| ...+.++ ++|+|+++|++|.+++++.+.++++.+... +++++++++
T Consensus 231 ~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~--~~~l~~~~g 308 (332)
T TIGR01607 231 NDIIKFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSIS--NKELHTLED 308 (332)
T ss_pred hhHHhcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCC--CcEEEEECC
Confidence 00000111 1123445 689999999999999999998888766432 458899999
Q ss_pred CCccCCCcccHHHHHHHHHHHHH
Q 004735 689 EQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 689 ~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++|.+.......++++.+.+||+
T Consensus 309 ~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 309 MDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCCccCCCHHHHHHHHHHHhh
Confidence 99998776667889999999985
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=137.85 Aligned_cols=145 Identities=26% Similarity=0.321 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcE
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 576 (732)
+||++||+... ...+...++.|+++||.|+.+|+++.+.... ..++.++++.+.+... +.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAGYP-DPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHHHC-TCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhhcC-CCCcE
Confidence 58999998443 4456788899999999999999987654311 2345566666533222 78999
Q ss_pred EEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEe
Q 004735 577 CITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQG 656 (732)
Q Consensus 577 ~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G 656 (732)
+++|||+||.+++.++...++++++|+++|..+. ..+.+.+.|+++++|
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~~~v~~~v~~~~~~~~-------------------------------~~~~~~~~pv~~i~g 112 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARNPRVKAVVLLSPYPDS-------------------------------EDLAKIRIPVLFIHG 112 (145)
T ss_dssp EEEEETHHHHHHHHHHHHSTTESEEEEESESSGC-------------------------------HHHTTTTSEEEEEEE
T ss_pred EEEEEccCcHHHHHHhhhccceeEEEEecCccch-------------------------------hhhhccCCcEEEEEE
Confidence 9999999999999999833789999999993110 112345679999999
Q ss_pred CCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 657 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 657 ~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
++|..+++++..+++++++ .+.+++++++++|+
T Consensus 113 ~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 113 ENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp TT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred CCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 9999999999999999887 37799999999994
|
... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=153.11 Aligned_cols=250 Identities=15% Similarity=0.165 Sum_probs=173.6
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCe---------------EeeceeecCCCCEEEEEEecc
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLV---------------SYADGIFDPRFNRYVTVREDR 212 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~---------------~~~~~~~spdG~~l~~~~~~~ 212 (732)
..++++++.++|+. +++||+.++.+ +..++||.+... .. +...+.|||||++|+|.+-+.
T Consensus 48 ~~~sP~g~~~~~v~--~~nly~~~~~~--~~~~~lT~dg~~-~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 48 AKWSPDGKYIAFVR--DNNLYLRDLAT--GQETQLTTDGEP-GIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp EEE-SSSTEEEEEE--TTEEEEESSTT--SEEEESES--TT-TEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred ceeecCCCeeEEEe--cCceEEEECCC--CCeEEeccccce-eEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence 34666677999996 56799999988 888999976311 11 123456999999999997643
Q ss_pred CCC---------------------------CCCceeEEEEEEcCCCCccccEEcc------cCCCceeccccCCCCCeEE
Q 004735 213 RQD---------------------------ALNSTTEIVAIALNGQNIQEPKVLV------SGSDFYAFPRMDPRGERMA 259 (732)
Q Consensus 213 ~~~---------------------------~~~~~~~l~~~d~~~~~~~~~~~lt------~~~~~~~~p~~SPDG~~la 259 (732)
..- ..+..-.|+++++++++ ...+. ..........|++|+++|+
T Consensus 123 ~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~---~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 123 REVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK---TTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC---CCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred cCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc---EEEeeeccccCCCccCcccceecCCCcEEE
Confidence 310 11356789999999887 43332 2233455789999999888
Q ss_pred EEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC-CCCc-EEEEEeccCCeeeEEEEeccCCeE
Q 004735 260 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-SKGE-LFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 260 ~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws-pDg~-l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
+...++.. +...|.++|.. +|+.+.+. ......|......+.+. +||. +++.+.+ .|+.+||.++.+++..
T Consensus 200 ~~~~nR~q---~~~~l~~~d~~-tg~~~~~~--~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~-~G~~hly~~~~~~~~~ 272 (353)
T PF00930_consen 200 VQWLNRDQ---NRLDLVLCDAS-TGETRVVL--EETSDGWVDVYDPPHFLGPDGNEFLWISER-DGYRHLYLYDLDGGKP 272 (353)
T ss_dssp EEEEETTS---TEEEEEEEEEC-TTTCEEEE--EEESSSSSSSSSEEEE-TTTSSEEEEEEET-TSSEEEEEEETTSSEE
T ss_pred EEEcccCC---CEEEEEEEECC-CCceeEEE--EecCCcceeeecccccccCCCCEEEEEEEc-CCCcEEEEEcccccce
Confidence 77766655 57789999998 67654333 22222555555566665 8887 8888886 8999999999999999
Q ss_pred EEecccccccCC-CceeecccceeeeeecCCCCEEEEEEEE--CCEEEEEEEECC-CCceEEeccCCCce-E-EeeEeCC
Q 004735 338 LAIYSLDAEFSR-PLWVFGINSYEIIQSHGEKNLIACSYRQ--NGRSYLGILDDF-GHSLSLLDIPFTDI-D-NITLGND 411 (732)
Q Consensus 338 ~~l~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~l~~~s~~--~g~~~ly~~~~~-~~~~~~lt~~~~~v-~-~~~~~~~ 411 (732)
+.||.++.++.. ..|.. +++.|||++.. ....|||+++++ +++.++||...... . .++.+++
T Consensus 273 ~~lT~G~~~V~~i~~~d~------------~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 273 RQLTSGDWEVTSILGWDE------------DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK 340 (353)
T ss_dssp EESS-SSS-EEEEEEEEC------------TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred eccccCceeecccceEcC------------CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence 999988776643 22332 78899999986 457999999999 99999999876654 2 2356677
Q ss_pred EEEEEEeCCCCCc
Q 004735 412 CLFVEGASGVEPS 424 (732)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (732)
.++..+++++.|+
T Consensus 341 y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 341 YYVDTYSGPDTPP 353 (353)
T ss_dssp EEEEEEESSSSCE
T ss_pred EEEEEEcCCCCCC
Confidence 8888888887663
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.8e-15 Score=150.29 Aligned_cols=229 Identities=20% Similarity=0.224 Sum_probs=139.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
..+.++++- .|..|++++..|.. .++.|+||++-|. .+.....+.....+++.+|++++++|.+|.+.
T Consensus 164 ~i~~v~iP~--eg~~I~g~LhlP~~-------~~p~P~VIv~gGl-Ds~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~-- 231 (411)
T PF06500_consen 164 PIEEVEIPF--EGKTIPGYLHLPSG-------EKPYPTVIVCGGL-DSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGE-- 231 (411)
T ss_dssp EEEEEEEEE--TTCEEEEEEEESSS-------SS-EEEEEEE--T-TS-GGGGHHHHHCCCHHCT-EEEEE--TTSGG--
T ss_pred CcEEEEEee--CCcEEEEEEEcCCC-------CCCCCEEEEeCCc-chhHHHHHHHHHHHHHhCCCEEEEEccCCCcc--
Confidence 357788887 47999999999985 6778999888665 22222223344567899999999999987543
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC-HHHHHhhc
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD-LSMLRAET 617 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d-~~~~~~~~ 617 (732)
+.......+. -.-..++++||.+.+.+|..||+++|.|+||+.+.+++. ++++++++|+..|+.. +..-....
T Consensus 232 -s~~~~l~~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~ 306 (411)
T PF06500_consen 232 -SPKWPLTQDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQ 306 (411)
T ss_dssp -GTTT-S-S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHH
T ss_pred -cccCCCCcCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHH
Confidence 2111122221 123568899999999999999999999999999999987 9999999999988642 21110111
Q ss_pred chhhhhhhh---hhcC----Chhh----hhhcCcccc--C--CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEE
Q 004735 618 HKFESRYID---NLVG----SEKD----YYEKSPINF--V--DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 682 (732)
Q Consensus 618 ~~~~~~~~~---~~~~----~~~~----~~~~sp~~~--~--~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (732)
.....-|++ ..+| +.+. ...+|-... + .+.++|+|.+.+++|+++|.++..-++. .+.+-+
T Consensus 307 ~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s~~gk 382 (411)
T PF06500_consen 307 QRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SSTDGK 382 (411)
T ss_dssp TTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TBTT-E
T ss_pred hcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cCCCCc
Confidence 111111211 1112 1221 233343221 3 4566899999999999999977755543 333446
Q ss_pred EEEeCCCC-ccCCCcccHHHHHHHHHHHHHHHh
Q 004735 683 LVEYEGEQ-HGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 683 ~~~~~~~g-H~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
...++... |. .....+..+.+||++.|
T Consensus 383 ~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 383 ALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp EEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred eeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 66666544 53 55688999999999876
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=151.08 Aligned_cols=232 Identities=12% Similarity=0.087 Sum_probs=138.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
....+++... +|..++.. |...+ ....|.||++||.+ .....|...+..|.+.||.|+++|+||.+...
T Consensus 20 ~~~~~~~~~~-~~~~~~i~-y~~~G-------~~~~~~lvliHG~~--~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~ 88 (302)
T PRK00870 20 APHYVDVDDG-DGGPLRMH-YVDEG-------PADGPPVLLLHGEP--SWSYLYRKMIPILAAAGHRVIAPDLIGFGRSD 88 (302)
T ss_pred CceeEeecCC-CCceEEEE-EEecC-------CCCCCEEEEECCCC--CchhhHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence 3455666654 56554422 22222 11247899999974 33455677788888889999999999765432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH------H
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------M 612 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~------~ 612 (732)
.. ... .....++..+.+..++++. +.+++.|+|||+||.+++.++. +|+++++++++++..... .
T Consensus 89 ~~---~~~---~~~~~~~~a~~l~~~l~~l--~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 160 (302)
T PRK00870 89 KP---TRR---EDYTYARHVEWMRSWFEQL--DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDA 160 (302)
T ss_pred CC---CCc---ccCCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHH
Confidence 21 000 1123445555555444442 3468999999999999999998 999999999987632100 0
Q ss_pred H--Hhh----cc-----h---------hhhhhhhhh---cCCh------hhhhhc---Cc-----------cccCCCCCC
Q 004735 613 L--RAE----TH-----K---------FESRYIDNL---VGSE------KDYYEK---SP-----------INFVDKFSC 649 (732)
Q Consensus 613 ~--~~~----~~-----~---------~~~~~~~~~---~~~~------~~~~~~---sp-----------~~~~~~i~~ 649 (732)
+ ... .. . ........+ .... ..+... .+ ...+.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 240 (302)
T PRK00870 161 FWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDK 240 (302)
T ss_pred HhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCC
Confidence 0 000 00 0 000000000 0000 000000 00 022467889
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
|+|+++|++|++++... .++.+.+... ..+++.+++++||.. ..+..+.+.+.+.+|++++
T Consensus 241 P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 241 PFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHPTIKGAGHFL-QEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred ceEEEecCCCCcccCch-HHHHhhcccc-cccceeeecCCCccc-hhhChHHHHHHHHHHHhcC
Confidence 99999999999998755 6666666532 123478899999975 4466788888888888653
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=149.37 Aligned_cols=207 Identities=12% Similarity=0.063 Sum_probs=129.9
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+.+ ...|......|+.. |.|+++|+||.|.....-....... .....+|..+.+..++++.. .++
T Consensus 30 ~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~-~~~~~~~~a~~l~~~l~~l~--~~~ 103 (294)
T PLN02824 30 PALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPN-SFYTFETWGEQLNDFCSDVV--GDP 103 (294)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCcccccccc-ccCCHHHHHHHHHHHHHHhc--CCC
Confidence 789999998544 45677778888766 6999999998765432210000000 11335555555555554432 368
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH----------HHH----Hhhc--chhh-------------hhhh
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----------SML----RAET--HKFE-------------SRYI 625 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~----------~~~----~~~~--~~~~-------------~~~~ 625 (732)
+.|+|||+||++++.++. +|++++++|++++.... ..+ .... .... ...+
T Consensus 104 ~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (294)
T PLN02824 104 AFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNIL 183 (294)
T ss_pred eEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHH
Confidence 999999999999999998 99999999999864310 000 0000 0000 0000
Q ss_pred hhhcC-----Ch----------------hhhhhc---C----ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 626 DNLVG-----SE----------------KDYYEK---S----PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 626 ~~~~~-----~~----------------~~~~~~---s----p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
...+. +. ..+... . ....+.++++|+|+++|++|..++.+.++.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~--- 260 (294)
T PLN02824 184 CQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFD--- 260 (294)
T ss_pred HHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcC---
Confidence 00000 00 011000 0 11335678999999999999999988776654432
Q ss_pred CCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 678 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 678 g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
...++++++++||.. ..+..+.+.+.+.+|++++
T Consensus 261 -~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 261 -AVEDFIVLPGVGHCP-QDEAPELVNPLIESFVARH 294 (294)
T ss_pred -CccceEEeCCCCCCh-hhhCHHHHHHHHHHHHhcC
Confidence 235899999999964 4477888999999998753
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=146.58 Aligned_cols=226 Identities=19% Similarity=0.232 Sum_probs=154.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC---CcccHHHHHH-HHCCCEEEEEcCCCCCCCChhhHHhh
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERL 546 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~---~~~~~~~~~l-~~~G~~v~~~d~rG~~g~g~~~~~~~ 546 (732)
....+...+|.|.... +..+.|+||++|||++.... ..+......+ .+.++.|+.+|||-.+.+...
T Consensus 70 ~~~~l~vRly~P~~~~----~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~P----- 140 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSS----SETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFP----- 140 (336)
T ss_pred CCCCeEEEEEcCCCCC----cccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCC-----
Confidence 4556788899997632 12678999999999876543 3344444444 566999999999977654322
Q ss_pred ccCCCcccHHHHHHHHHHHHhc----CCCCCCcEEEEEcChHHHHHHHHHh-----C--CCcceEEEeecCcCCHHHHHh
Q 004735 547 LGRWGIVDVNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALA-----F--RDTFKAGASLYGVADLSMLRA 615 (732)
Q Consensus 547 ~~~~~~~~~~D~~~~i~~l~~~----~~~d~~ri~i~G~S~GG~~a~~~~~-----~--p~~~~a~v~~~~~~d~~~~~~ 615 (732)
..++|..+++.|+.++ ..+|++||+|+|-|.||.+|..++. . +.++++.|++.|++.......
T Consensus 141 ------a~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~ 214 (336)
T KOG1515|consen 141 ------AAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTE 214 (336)
T ss_pred ------ccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCC
Confidence 3479999999999885 6789999999999999999987775 2 457999999999875433222
Q ss_pred hcch------------hhhhhhhhhcCChh---hhhhcCccc-----cCCCCC-CCEEEEEeCCCCccChHHHHHHHHHH
Q 004735 616 ETHK------------FESRYIDNLVGSEK---DYYEKSPIN-----FVDKFS-CPIILFQGLEDKVVPPDQARKIYKAL 674 (732)
Q Consensus 616 ~~~~------------~~~~~~~~~~~~~~---~~~~~sp~~-----~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (732)
...+ ....++...+.+.. .-...+|.. ...... .|+|++.++.|.. ..++..+.++|
T Consensus 215 ~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L--~D~~~~Y~~~L 292 (336)
T KOG1515|consen 215 SEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVL--RDEGLAYAEKL 292 (336)
T ss_pred HHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhh--hhhhHHHHHHH
Confidence 1100 00111111111111 001112222 111223 5699999999966 58899999999
Q ss_pred HhCCCCEEEEEeCCCCccCC--Cc--ccHHHHHHHHHHHHHHH
Q 004735 675 KENGLPVALVEYEGEQHGFR--KA--ENIKFTLEQQMVFFARV 713 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~--~~--~~~~~~~~~~~~fl~~~ 713 (732)
++.|++++++.++++.|++. .+ +...+.++.+.+|+.+.
T Consensus 293 kk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 293 KKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 99999999999999999863 22 35667778888887754
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=143.04 Aligned_cols=189 Identities=21% Similarity=0.209 Sum_probs=111.2
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHH-HHHHCCCEEEEEcCCC---CCCCCh---hhHHhhccCC-CcccHHHHH----
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQ-YWTSRGWAFVDVNYGG---STGYGR---EFRERLLGRW-GIVDVNDCC---- 559 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~-~l~~~G~~v~~~d~rG---~~g~g~---~~~~~~~~~~-~~~~~~D~~---- 559 (732)
++..|+||++||.+... ..+..... .+....+.++.++-+- ....|. .|.+...... ...+.+++.
T Consensus 11 ~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~ 88 (216)
T PF02230_consen 11 GKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE 88 (216)
T ss_dssp ST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred CCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence 46679999999974333 22222222 1122466777776321 001122 3332211111 111223333
Q ss_pred ---HHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhh
Q 004735 560 ---SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY 635 (732)
Q Consensus 560 ---~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (732)
+.++...+. .++++||+++|+|.||.+++.++. +|..+.++++++|........
T Consensus 89 ~l~~li~~~~~~-~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~--------------------- 146 (216)
T PF02230_consen 89 RLDELIDEEVAY-GIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESEL--------------------- 146 (216)
T ss_dssp HHHHHHHHHHHT-T--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCC---------------------
T ss_pred HHHHHHHHHHHc-CCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccc---------------------
Confidence 333333333 489999999999999999999998 999999999999975322100
Q ss_pred hhcCccccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 636 YEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 636 ~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
....... ++|++++||.+|+++|.+.+++..+.|++.+.+++++.|++.||.+. .+.++.+.+||++++
T Consensus 147 -----~~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 147 -----EDRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp -----HCCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred -----cccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 0001111 68999999999999999999999999999999999999999999864 577888999998864
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=145.90 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=125.2
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|+||++||.+.. ...|...++.| ..||.|+++|+||.+..... . .....++..+.+..+++.. +.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~-----~---~~~~~~~~~~~~~~~i~~~--~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPAL-TPDFRVLRYDKRGHGLSDAP-----E---GPYSIEDLADDVLALLDHL--GI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHh-hcccEEEEecCCCCCCCCCC-----C---CCCCHHHHHHHHHHHHHHh--CC
Confidence 46899999997433 34455566665 46899999999987543211 1 1123556555555555542 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH---HHhh--------cch----hhhhhhhhhcC-------
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---LRAE--------THK----FESRYIDNLVG------- 630 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~---~~~~--------~~~----~~~~~~~~~~~------- 630 (732)
+++.++|||+||++++.++. +|++++++++.++...... +... ... ....+......
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 68999999999999999888 8899999888775432110 0000 000 00000000000
Q ss_pred ----------Chh-------hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 631 ----------SEK-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 631 ----------~~~-------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
... .+...+....+.++++|+++++|++|..+|.+....+.+.++ +.+++++++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcc
Confidence 000 011112223456788999999999999999988877776654 45889999999965
Q ss_pred CCcccHHHHHHHHHHHH
Q 004735 694 RKAENIKFTLEQQMVFF 710 (732)
Q Consensus 694 ~~~~~~~~~~~~~~~fl 710 (732)
.. +..+.+.+.+.+||
T Consensus 235 ~~-~~p~~~~~~i~~fl 250 (251)
T TIGR02427 235 CV-EQPEAFNAALRDFL 250 (251)
T ss_pred cc-cChHHHHHHHHHHh
Confidence 43 55667777777775
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-15 Score=152.10 Aligned_cols=209 Identities=22% Similarity=0.279 Sum_probs=139.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc----cc----HHHHHHHHCCCEEEEEcCCCCCCCChhh
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI----LN----LSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~----~~----~~~~~l~~~G~~v~~~d~rG~~g~g~~~ 542 (732)
||.+|.+.+|.| +.. ..++.|+||..|+......... .. .....|+++||+|+..|.||.++++..+
T Consensus 1 DGv~L~adv~~P-~~~----~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~ 75 (272)
T PF02129_consen 1 DGVRLAADVYRP-GAD----GGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEF 75 (272)
T ss_dssp TS-EEEEEEEEE---T----TSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B
T ss_pred CCCEEEEEEEec-CCC----CCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcc
Confidence 689999999999 211 2678999999999742210100 00 0122399999999999999988766554
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH-HHhh----
Q 004735 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-LRAE---- 616 (732)
Q Consensus 543 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~-~~~~---- 616 (732)
... ...+.+|..++|+|+.+++..+ .||+++|.|++|+.++.+++ .|..++|++...+..|+.. ....
T Consensus 76 ~~~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~ 149 (272)
T PF02129_consen 76 DPM-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAF 149 (272)
T ss_dssp -TT-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEE
T ss_pred ccC-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcc
Confidence 432 3356899999999999997654 79999999999999999999 8999999999888765433 1000
Q ss_pred ----cchh--------------------h----------hh----------hhhhhc---CChhhhhhcCccccCCCCCC
Q 004735 617 ----THKF--------------------E----------SR----------YIDNLV---GSEKDYYEKSPINFVDKFSC 649 (732)
Q Consensus 617 ----~~~~--------------------~----------~~----------~~~~~~---~~~~~~~~~sp~~~~~~i~~ 649 (732)
...+ . .. +..... ...+.|.+.++...+.++++
T Consensus 150 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~v 229 (272)
T PF02129_consen 150 RLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDV 229 (272)
T ss_dssp BCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--S
T ss_pred cccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCC
Confidence 0000 0 00 000000 02245555566666789999
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCC-CCEEEEEeCCCCcc
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENG-LPVALVEYEGEQHG 692 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g-~~~~~~~~~~~gH~ 692 (732)
|+|+++|-.|.... ..+.+.++++++.+ .+.++++-|. +|+
T Consensus 230 P~l~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 230 PVLIVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEEEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CEEEecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999997666 88999999999988 6778888775 574
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-14 Score=142.21 Aligned_cols=243 Identities=17% Similarity=0.158 Sum_probs=161.2
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
-+..-++.+ ||..+...+..+.+.... +.....|+||++||..++........++..+.++||.|+++|.||.+|...
T Consensus 93 y~Reii~~~-DGG~~~lDW~~~~~~~~~-~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~L 170 (409)
T KOG1838|consen 93 YTREIIKTS-DGGTVTLDWVENPDSRCR-TDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKL 170 (409)
T ss_pred ceeEEEEeC-CCCEEEEeeccCcccccC-CCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCcc
Confidence 345556666 888888877766552110 113467999999998777777666777778888999999999999776433
Q ss_pred hhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CCCcceEEEeecCcCCHH---HH
Q 004735 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLS---ML 613 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~~d~~---~~ 613 (732)
..... +.....+|+.++++++.+++. ..++..+|.|+||.+...++. ..++..|+++.+|+ |.. ..
T Consensus 171 tTpr~----f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pw-d~~~~~~~ 243 (409)
T KOG1838|consen 171 TTPRL----FTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPW-DLLAASRS 243 (409)
T ss_pred CCCce----eecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccc-hhhhhhhH
Confidence 32111 223447999999999999853 458999999999999988876 33344444444454 421 11
Q ss_pred Hhh-----------------------------------------cchhhhhhhhhhcC---ChhhhhhcCccccCCCCCC
Q 004735 614 RAE-----------------------------------------THKFESRYIDNLVG---SEKDYYEKSPINFVDKFSC 649 (732)
Q Consensus 614 ~~~-----------------------------------------~~~~~~~~~~~~~~---~~~~~~~~sp~~~~~~i~~ 649 (732)
... ...|+..+....++ -.+.|.+.|+..++++|++
T Consensus 244 ~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs~~~v~~I~V 323 (409)
T KOG1838|consen 244 IETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASSSNYVDKIKV 323 (409)
T ss_pred HhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcchhhhcccccc
Confidence 000 00111112222222 2478888999999999999
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc-CCCc--ccHHHHHHH-HHHHHHHHhC
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-FRKA--ENIKFTLEQ-QMVFFARVVG 715 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~~~~--~~~~~~~~~-~~~fl~~~l~ 715 (732)
|+|+|++.+|+++|.. +.-. .....+.++-+.+-..+||- |... .+...++++ +.+||.+..-
T Consensus 324 P~L~ina~DDPv~p~~-~ip~--~~~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~~ 390 (409)
T KOG1838|consen 324 PLLCINAADDPVVPEE-AIPI--DDIKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAIF 390 (409)
T ss_pred cEEEEecCCCCCCCcc-cCCH--HHHhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHHh
Confidence 9999999999999874 2121 22234557888888889993 3221 144566666 8888877653
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=142.57 Aligned_cols=202 Identities=12% Similarity=0.124 Sum_probs=126.9
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcE
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 576 (732)
.||++||.+. ....|...+..|++.||.|+++|+||.+..... . . .....++..+.+..+++.... .+++
T Consensus 5 ~vvllHG~~~--~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~---~--~--~~~~~~~~a~dl~~~l~~l~~-~~~~ 74 (255)
T PLN02965 5 HFVFVHGASH--GAWCWYKLATLLDAAGFKSTCVDLTGAGISLTD---S--N--TVSSSDQYNRPLFALLSDLPP-DHKV 74 (255)
T ss_pred EEEEECCCCC--CcCcHHHHHHHHhhCCceEEEecCCcCCCCCCC---c--c--ccCCHHHHHHHHHHHHHhcCC-CCCE
Confidence 5999999843 345677788888889999999999987644221 0 0 012244444444444443211 1589
Q ss_pred EEEEcChHHHHHHHHHh-CCCcceEEEeecCcC---C---HHHHH---hhcc-------------h-----hhhhhhhhh
Q 004735 577 CITGGSAGGYTTLAALA-FRDTFKAGASLYGVA---D---LSMLR---AETH-------------K-----FESRYIDNL 628 (732)
Q Consensus 577 ~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~---d---~~~~~---~~~~-------------~-----~~~~~~~~~ 628 (732)
.++||||||.+++.++. +|++++++|+.++.. . ...+. .... . ....+....
T Consensus 75 ~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (255)
T PLN02965 75 ILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRHY 154 (255)
T ss_pred EEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHHH
Confidence 99999999999999988 999999999887641 1 11110 0000 0 000011000
Q ss_pred -cCC--hh--hh--hh--cCc----------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004735 629 -VGS--EK--DY--YE--KSP----------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689 (732)
Q Consensus 629 -~~~--~~--~~--~~--~sp----------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (732)
... .+ .+ .. ..+ ...+.++++|+|+++|++|..+|+..++.+.+.+. +.++++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~----~a~~~~i~~~ 230 (255)
T PLN02965 155 YYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWP----PAQTYVLEDS 230 (255)
T ss_pred HhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCC----cceEEEecCC
Confidence 000 00 00 00 000 01234688999999999999999988888777665 4588999999
Q ss_pred CccCCCcccHHHHHHHHHHHHHHH
Q 004735 690 QHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 690 gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
||.+. .+..+++.+.+.+|++..
T Consensus 231 GH~~~-~e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 231 DHSAF-FSVPTTLFQYLLQAVSSL 253 (255)
T ss_pred CCchh-hcCHHHHHHHHHHHHHHh
Confidence 99754 367778888888886653
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-14 Score=146.27 Aligned_cols=217 Identities=16% Similarity=0.142 Sum_probs=135.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.+++++.... +...|.||++||.+... ..|......|.+ +|.|+++|+||.+..... ..
T Consensus 10 ~~~~~~~~~~~~---------~~~~~plvllHG~~~~~--~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~-----~~-- 70 (276)
T TIGR02240 10 DGQSIRTAVRPG---------KEGLTPLLIFNGIGANL--ELVFPFIEALDP-DLEVIAFDVPGVGGSSTP-----RH-- 70 (276)
T ss_pred CCcEEEEEEecC---------CCCCCcEEEEeCCCcch--HHHHHHHHHhcc-CceEEEECCCCCCCCCCC-----CC--
Confidence 677887655421 12236789999974433 455666666644 699999999976554321 01
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-------HH--Hhhcchh
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-------ML--RAETHKF 620 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-------~~--~~~~~~~ 620 (732)
....+++.+.+..+++.. +.+++.|+|||+||.+++.++. +|++++++|+.++..... .. ......+
T Consensus 71 -~~~~~~~~~~~~~~i~~l--~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (276)
T TIGR02240 71 -PYRFPGLAKLAARMLDYL--DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRY 147 (276)
T ss_pred -cCcHHHHHHHHHHHHHHh--CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhh
Confidence 122344444444444432 3468999999999999999998 999999999998764311 00 0000000
Q ss_pred hh-----hhhhhhcC-----Chh----------------hhh------hcCccccCCCCCCCEEEEEeCCCCccChHHHH
Q 004735 621 ES-----RYIDNLVG-----SEK----------------DYY------EKSPINFVDKFSCPIILFQGLEDKVVPPDQAR 668 (732)
Q Consensus 621 ~~-----~~~~~~~~-----~~~----------------~~~------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~ 668 (732)
.. .......+ +++ .+. .......+.++++|+|+++|++|+++++..++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~ 227 (276)
T TIGR02240 148 IQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMR 227 (276)
T ss_pred hccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHH
Confidence 00 00000000 000 000 01112336788999999999999999999888
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 669 KIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 669 ~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++.+.+. ..+++++++ ||.. ..+..+++.+.+.+|+++.-.
T Consensus 228 ~l~~~~~----~~~~~~i~~-gH~~-~~e~p~~~~~~i~~fl~~~~~ 268 (276)
T TIGR02240 228 LLAWRIP----NAELHIIDD-GHLF-LITRAEAVAPIIMKFLAEERQ 268 (276)
T ss_pred HHHHhCC----CCEEEEEcC-CCch-hhccHHHHHHHHHHHHHHhhh
Confidence 8877764 347788875 9964 346778899999999987654
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=135.08 Aligned_cols=208 Identities=16% Similarity=0.160 Sum_probs=130.0
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
...|+|+++||.|... ..|+.....|+++||.|+++|+||.+ .+-....... ..+..++.-+..++....
T Consensus 42 ~~gP~illlHGfPe~w--yswr~q~~~la~~~~rviA~DlrGyG---~Sd~P~~~~~---Yt~~~l~~di~~lld~Lg-- 111 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESW--YSWRHQIPGLASRGYRVIAPDLRGYG---FSDAPPHISE---YTIDELVGDIVALLDHLG-- 111 (322)
T ss_pred CCCCEEEEEccCCccc--hhhhhhhhhhhhcceEEEecCCCCCC---CCCCCCCcce---eeHHHHHHHHHHHHHHhc--
Confidence 3469999999997665 44566778899999999999999654 3322111111 223333333444443322
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC---HHHHHhhcchh---------------h------------
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSMLRAETHKF---------------E------------ 621 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d---~~~~~~~~~~~---------------~------------ 621 (732)
-+|+.++||++|+.+|+.++. +|+++++.|..+.... ..........+ +
T Consensus 112 ~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~~~ 191 (322)
T KOG4178|consen 112 LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEMLV 191 (322)
T ss_pred cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHHhH
Confidence 479999999999999999998 9999999998875443 00000000000 0
Q ss_pred hh----------------------hhhhhc-------------CChhhhhh--cCc---cccCCCCCCCEEEEEeCCCCc
Q 004735 622 SR----------------------YIDNLV-------------GSEKDYYE--KSP---INFVDKFSCPIILFQGLEDKV 661 (732)
Q Consensus 622 ~~----------------------~~~~~~-------------~~~~~~~~--~sp---~~~~~~i~~P~Lii~G~~D~~ 661 (732)
.. .++.-+ +--..|++ +.+ .....++++|++++.|+.|.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D~v 271 (322)
T KOG4178|consen 192 KTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLDPV 271 (322)
T ss_pred HhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCccc
Confidence 00 000000 00011111 111 233567889999999999999
Q ss_pred cChHHHHHHHHH-HHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 662 VPPDQARKIYKA-LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 662 v~~~~~~~~~~~-l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.++....+.++. +.. -.+.+++++.||. ...+...++.+.+++|+++..
T Consensus 272 ~~~p~~~~~~rk~vp~---l~~~vv~~~~gH~-vqqe~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 272 LPYPIFGELYRKDVPR---LTERVVIEGIGHF-VQQEKPQEVNQAILGFINSFS 321 (322)
T ss_pred ccchhHHHHHHHhhcc---ccceEEecCCccc-ccccCHHHHHHHHHHHHHhhc
Confidence 887633333333 332 2268899999995 566888999999999998764
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=151.89 Aligned_cols=247 Identities=17% Similarity=0.148 Sum_probs=159.0
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc----cHHHHHHHHCCCEEEEEcCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~----~~~~~~l~~~G~~v~~~d~rG 534 (732)
-..|+..+.+. ||..+....+.+.... . ...+.|.|+++||...+...+.. ...+..|+++||.|+++|.||
T Consensus 42 y~~e~h~v~T~-DGy~L~l~ri~~~~~~-~--~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG 117 (395)
T PLN02872 42 YSCTEHTIQTK-DGYLLALQRVSSRNPR-L--GSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRG 117 (395)
T ss_pred CCceEEEEECC-CCcEEEEEEcCCCCCC-C--CCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccc
Confidence 35688889898 9999987777543211 0 12345789999997554444321 235567889999999999999
Q ss_pred CCC-CChhhHHhh-cc----CCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCC---cceEEEeec
Q 004735 535 STG-YGREFRERL-LG----RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLY 605 (732)
Q Consensus 535 ~~g-~g~~~~~~~-~~----~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~---~~~a~v~~~ 605 (732)
.+. +|....... .. .|......|+.++++++.+.. .+++.++|||+||.+++.++.+|+ +++++++++
T Consensus 118 ~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~~~p~~~~~v~~~~~l~ 194 (395)
T PLN02872 118 TRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAALTQPNVVEMVEAAALLC 194 (395)
T ss_pred cccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHhhChHHHHHHHHHHHhc
Confidence 653 232211111 11 121222479999999998653 368999999999999986666766 577777777
Q ss_pred CcCCHHH--------HHh----------h------cchhhhhh--------------hhhhcC-----------------
Q 004735 606 GVADLSM--------LRA----------E------THKFESRY--------------IDNLVG----------------- 630 (732)
Q Consensus 606 ~~~d~~~--------~~~----------~------~~~~~~~~--------------~~~~~~----------------- 630 (732)
|+..+.. +.. . ........ +..+.|
T Consensus 195 P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~ 274 (395)
T PLN02872 195 PISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYE 274 (395)
T ss_pred chhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcC
Confidence 6532100 000 0 00000000 000000
Q ss_pred ------------------------------Chhhhhh-cCccccCCCC--CCCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 631 ------------------------------SEKDYYE-KSPINFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 631 ------------------------------~~~~~~~-~sp~~~~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
+...|.. ..|...++++ ++|+++++|++|..+++....++.+.+..
T Consensus 275 pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~- 353 (395)
T PLN02872 275 PHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS- 353 (395)
T ss_pred CCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC-
Confidence 1111211 2345567888 47999999999999999998888887763
Q ss_pred CCCEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHHhC
Q 004735 678 GLPVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 678 g~~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
..+++.+++.+|. +...+..+.+++.+++|++++.+
T Consensus 354 --~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 354 --KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred --ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 2478889999996 45667788899999999998765
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-14 Score=149.82 Aligned_cols=225 Identities=11% Similarity=0.102 Sum_probs=137.5
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HHHHHH---HCCCEEEEEcCCCCCCCCh
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWT---SRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~---~~G~~v~~~d~rG~~g~g~ 540 (732)
.+.+. .+..+++....|.+ ....|.||++||.+... ..|.. ....|. +.+|.|+++|+||.+....
T Consensus 179 ~~~~~-~~~~l~~~~~gp~~-------~~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~ 248 (481)
T PLN03087 179 SWLSS-SNESLFVHVQQPKD-------NKAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPK 248 (481)
T ss_pred eeEee-CCeEEEEEEecCCC-------CCCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcC
Confidence 34443 57788888887764 23347899999985443 33332 233443 4799999999997654322
Q ss_pred hhHHhhccCCCcccHHHHHHHH-HHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-------
Q 004735 541 EFRERLLGRWGIVDVNDCCSCA-TFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------- 611 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~------- 611 (732)
.. .. ....++..+.+ ..+++.. +.+++.++||||||++++.++. +|+++++++++++.....
T Consensus 249 p~----~~---~ytl~~~a~~l~~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~ 319 (481)
T PLN03087 249 PA----DS---LYTLREHLEMIERSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQAT 319 (481)
T ss_pred CC----CC---cCCHHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHH
Confidence 10 11 12345555555 2444443 3468999999999999999988 999999999988643110
Q ss_pred -HHHhh---c---c-----hhhhhh------------------hh---hhcCC---hhhhh----hc--Cc---------
Q 004735 612 -MLRAE---T---H-----KFESRY------------------ID---NLVGS---EKDYY----EK--SP--------- 640 (732)
Q Consensus 612 -~~~~~---~---~-----~~~~~~------------------~~---~~~~~---~~~~~----~~--sp--------- 640 (732)
..... . . .....+ +. ..+.. ...+. .. .+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 399 (481)
T PLN03087 320 QYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNII 399 (481)
T ss_pred HHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHH
Confidence 00000 0 0 000000 00 00000 00000 00 00
Q ss_pred ----------c-ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 641 ----------I-NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 641 ----------~-~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
+ ....++++|+|+++|++|.++|++.++.+.+.+. ++++++++++||.....+....+.+.+.+|
T Consensus 400 ~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F 475 (481)
T PLN03087 400 CGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVP----RARVKVIDDKDHITIVVGRQKEFARELEEI 475 (481)
T ss_pred hchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCC----CCEEEEeCCCCCcchhhcCHHHHHHHHHHH
Confidence 0 0112688999999999999999999988877764 468999999999744335567777788877
Q ss_pred HHH
Q 004735 710 FAR 712 (732)
Q Consensus 710 l~~ 712 (732)
++.
T Consensus 476 ~~~ 478 (481)
T PLN03087 476 WRR 478 (481)
T ss_pred hhc
Confidence 753
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-14 Score=135.18 Aligned_cols=179 Identities=18% Similarity=0.140 Sum_probs=114.3
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHC--CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
|.||++||.+.+...+........+.+. +|.|+++|++|. + ++..+.+..++++. +.
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~---~----------------~~~~~~l~~l~~~~--~~ 60 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY---P----------------ADAAELLESLVLEH--GG 60 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC---H----------------HHHHHHHHHHHHHc--CC
Confidence 6799999985554443333345556553 799999999853 1 23445555555543 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc-chhhhhhhh--hhcCChhhh---hhcCccccCCC
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HKFESRYID--NLVGSEKDY---YEKSPINFVDK 646 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-~~~~~~~~~--~~~~~~~~~---~~~sp~~~~~~ 646 (732)
+++.++|+|+||++++.++. +|. + +|+++|..+........ ......+.. ..+ ..+.+ ....+ ..+.
T Consensus 61 ~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~-~~i~- 134 (190)
T PRK11071 61 DPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVL-ESRHIYDLKVMQI-DPLE- 134 (190)
T ss_pred CCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEE-cHHHHHHHHhcCC-ccCC-
Confidence 68999999999999999998 773 3 47788877743222110 000000000 000 11111 11222 1133
Q ss_pred CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 647 FSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
..+|++++||++|.+||++.+.++++.. .+++++|++|.|. +.++.++.+.+|+.
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH~f~---~~~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNHAFV---GFERYFNQIVDFLG 189 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCcchh---hHHHhHHHHHHHhc
Confidence 5678899999999999999999998842 5667899999985 33778888888874
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-14 Score=143.19 Aligned_cols=200 Identities=18% Similarity=0.130 Sum_probs=125.5
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.. ...|......|++ +|.|+++|+||.+...... . ....+++..+.+..++++. +.+
T Consensus 28 ~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~-----~--~~~~~~~~~~~l~~~i~~~--~~~ 95 (278)
T TIGR03056 28 GPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPF-----R--FRFTLPSMAEDLSALCAAE--GLS 95 (278)
T ss_pred CCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCCCCCCCCcc-----c--cCCCHHHHHHHHHHHHHHc--CCC
Confidence 4789999997433 3445566666654 6999999999765432111 0 1123556666666555543 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH---------HHh--hcchh--------------hhhhhhh-
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---------LRA--ETHKF--------------ESRYIDN- 627 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~---------~~~--~~~~~--------------~~~~~~~- 627 (732)
+++|+|||+||.+++.++. +|+++++++++++...... +.. ....+ ...+...
T Consensus 96 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (278)
T TIGR03056 96 PDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDT 175 (278)
T ss_pred CceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhcc
Confidence 7899999999999999988 8999998888876432100 000 00000 0000000
Q ss_pred --hcC--Chhhhh-----------------hcC---ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEE
Q 004735 628 --LVG--SEKDYY-----------------EKS---PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 683 (732)
Q Consensus 628 --~~~--~~~~~~-----------------~~s---p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (732)
.+. ....+. .+. ....+.++++|+|+++|++|..+|....+.+.+.+. ++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~----~~~~ 251 (278)
T TIGR03056 176 GSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVP----TATL 251 (278)
T ss_pred ccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhcc----CCeE
Confidence 000 000000 000 112356788999999999999999988887766654 4588
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 684 VEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 684 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++++++||.+.. +..++..+.+.+|++
T Consensus 252 ~~~~~~gH~~~~-e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 252 HVVPGGGHLVHE-EQADGVVGLILQAAE 278 (278)
T ss_pred EEECCCCCcccc-cCHHHHHHHHHHHhC
Confidence 999999997543 567788888888873
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=143.04 Aligned_cols=203 Identities=12% Similarity=0.112 Sum_probs=126.8
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+.+ ...|...++.|++.+ .|+++|+||.+..... ... ...++..+.+..+++.. ..++
T Consensus 28 ~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G~G~S~~~-----~~~---~~~~~~a~dl~~ll~~l--~~~~ 94 (295)
T PRK03592 28 DPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIGMGASDKP-----DID---YTFADHARYLDAWFDAL--GLDD 94 (295)
T ss_pred CEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCCCCCCCCC-----CCC---CCHHHHHHHHHHHHHHh--CCCC
Confidence 689999998543 355667788888876 9999999976554322 111 23444444444444432 3468
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC---HHHH-------Hhh--cch----h---hhhhhhhhcC-----
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSML-------RAE--THK----F---ESRYIDNLVG----- 630 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d---~~~~-------~~~--~~~----~---~~~~~~~~~~----- 630 (732)
+.++|||+||.+++.++. +|+++++++++++... +..+ ... ... . ...+....+.
T Consensus 95 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (295)
T PRK03592 95 VVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGSILR 174 (295)
T ss_pred eEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCcccc
Confidence 999999999999999998 9999999999887421 1100 000 000 0 0000010000
Q ss_pred --Chh---hhh-----------------hcCc--------------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHH
Q 004735 631 --SEK---DYY-----------------EKSP--------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 674 (732)
Q Consensus 631 --~~~---~~~-----------------~~sp--------------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (732)
.++ .+. ...+ ...+.++++|+|+++|++|..+++....++...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~ 254 (295)
T PRK03592 175 PLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRSW 254 (295)
T ss_pred cCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHHh
Confidence 000 000 0000 0124568899999999999999665555554443
Q ss_pred HhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 675 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.. +.++++++++||... .+..+++.+.+.+|+++...
T Consensus 255 ~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 255 PN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred hh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhcc
Confidence 32 458999999999754 46778899999999987653
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-14 Score=140.49 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=123.4
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHHHHHhcCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~ 570 (732)
....|.||++||.+... ..|......|+ .+|.|+++|+||.|..... ..+.. ...+|+.+.++.+
T Consensus 13 ~~~~~~iv~lhG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~------~~~~~~~~~~d~~~~l~~l----- 78 (255)
T PRK10673 13 PHNNSPIVLVHGLFGSL--DNLGVLARDLV-NDHDIIQVDMRNHGLSPRD------PVMNYPAMAQDLLDTLDAL----- 78 (255)
T ss_pred CCCCCCEEEECCCCCch--hHHHHHHHHHh-hCCeEEEECCCCCCCCCCC------CCCCHHHHHHHHHHHHHHc-----
Confidence 34568899999985443 34555566664 4699999999986543221 11110 1134455555443
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc-CCHH-----HHHh---h-----cchh--hhhhhhhhcC---
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV-ADLS-----MLRA---E-----THKF--ESRYIDNLVG--- 630 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~-~d~~-----~~~~---~-----~~~~--~~~~~~~~~~--- 630 (732)
..+++.++|||+||.+++.++. +|+++++++++++. .+.. .... . .... ...++...+.
T Consensus 79 -~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 79 -QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred -CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 3457999999999999999988 89999999987432 1110 0000 0 0000 0000000000
Q ss_pred ----------C-------h---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004735 631 ----------S-------E---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690 (732)
Q Consensus 631 ----------~-------~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~g 690 (732)
. + ..+........+.++++|+|+++|++|..++.+..+.+.+.+. ++++.+++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~g 233 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGAG 233 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCCC
Confidence 0 0 0111111122355678999999999999998877766665543 56889999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHH
Q 004735 691 HGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 691 H~~~~~~~~~~~~~~~~~fl~~ 712 (732)
|.+ ..+..+.+.+.+.+||.+
T Consensus 234 H~~-~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 234 HWV-HAEKPDAVLRAIRRYLND 254 (255)
T ss_pred Cee-eccCHHHHHHHHHHHHhc
Confidence 965 446677888888888864
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-14 Score=143.26 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=136.1
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCC
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG 551 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~ 551 (732)
...+++.++.|.. .+..|+||++||+... ...+...++.|+++||.|+++|++|..+.+ .
T Consensus 36 ~~~~p~~v~~P~~-------~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~~-----------~ 95 (313)
T PLN00021 36 SPPKPLLVATPSE-------AGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGPD-----------G 95 (313)
T ss_pred CCCceEEEEeCCC-------CCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCCC-----------c
Confidence 3567888999975 5678999999998433 445667888999999999999988643211 1
Q ss_pred cccHHHHHHHHHHHHhc--------CCCCCCcEEEEEcChHHHHHHHHHh-CCC-----cceEEEeecCcCCHHHHHhhc
Q 004735 552 IVDVNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAALA-FRD-----TFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 552 ~~~~~D~~~~i~~l~~~--------~~~d~~ri~i~G~S~GG~~a~~~~~-~p~-----~~~a~v~~~~~~d~~~~~~~~ 617 (732)
..+++|..++++|+.+. ...|.++++|+|||+||++++.++. +++ ++++++.+.|+........ +
T Consensus 96 ~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~~-~ 174 (313)
T PLN00021 96 TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGKQ-T 174 (313)
T ss_pred hhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccccccccC-C
Confidence 12356677777777652 2367789999999999999999987 553 6899999888754321000 0
Q ss_pred chhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCC-----c----cChH-HHHHHHHHHHhCCCCEEEEEeC
Q 004735 618 HKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK-----V----VPPD-QARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-----~----v~~~-~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
.+..+ ... ...-++.+|+|++++..|. . .|.. +..++++..+. +..+.+.+
T Consensus 175 -------------~p~il-~~~--~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~---~~~~~~~~ 235 (313)
T PLN00021 175 -------------PPPVL-TYA--PHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA---PAVHFVAK 235 (313)
T ss_pred -------------CCccc-ccC--cccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---Ceeeeeec
Confidence 00000 000 1122367999999999763 2 2233 33677776553 77888999
Q ss_pred CCCcc-CCCc---------------------ccHHHHHHHHHHHHHHHhCC
Q 004735 688 GEQHG-FRKA---------------------ENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 688 ~~gH~-~~~~---------------------~~~~~~~~~~~~fl~~~l~~ 716 (732)
++||. +... ..++.....++.||..+|.+
T Consensus 236 ~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~ 286 (313)
T PLN00021 236 DYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEG 286 (313)
T ss_pred CCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcC
Confidence 99995 2111 11233445678999999975
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=136.56 Aligned_cols=191 Identities=18% Similarity=0.135 Sum_probs=118.6
Q ss_pred EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEcCCCC--CCCChhhHHhhccCCCc
Q 004735 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGS--TGYGREFRERLLGRWGI 552 (732)
Q Consensus 476 ~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~rG~--~g~g~~~~~~~~~~~~~ 552 (732)
.+.+|.|+... ..+.|+||++||+........ ...+.+...++||+|+.|+-... ......|.. .....+.
T Consensus 2 ~Y~lYvP~~~~-----~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~ 75 (220)
T PF10503_consen 2 SYRLYVPPGAP-----RGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGG 75 (220)
T ss_pred cEEEecCCCCC-----CCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCc
Confidence 46788898621 346899999999854432111 11123333456999999985321 111122222 1222344
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhc-C
Q 004735 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV-G 630 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~-~ 630 (732)
.+...+.+.++++.+++.+|++||.+.|+|.||+|+..++. +||+|.++.+++|..--.... ....+ ..+..-. .
T Consensus 76 ~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~-~~~a~--~~m~~g~~~ 152 (220)
T PF10503_consen 76 GDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAAS-GASAL--SAMRSGPRP 152 (220)
T ss_pred cchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccC-cccHH--HHhhCCCCC
Confidence 56777889999999999999999999999999999999988 999999999988864211100 00000 0000000 0
Q ss_pred Chhh-hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 631 SEKD-YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 631 ~~~~-~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
.+.. ........ ..-..|++++||+.|..|.+.++.++.+++...
T Consensus 153 ~p~~~~~a~~~~g--~~~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 153 APAAAWGARSDAG--AYPGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred ChHHHHHhhhhcc--CCCCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 1111 11111000 011259999999999999999999999988764
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=145.36 Aligned_cols=205 Identities=17% Similarity=0.190 Sum_probs=125.6
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.. ...|...+..|++ +|.|+++|++|.+...... .. ....++..+.+..++++. ..+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~----~~---~~~~~~~a~~l~~~l~~l--~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPP----GF---SYTMETWAELILDFLEEV--VQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCC----Cc---cccHHHHHHHHHHHHHHh--cCC
Confidence 3779999998543 3456666776754 7999999999766532210 00 122344444443333332 346
Q ss_pred cEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHH------HHHh--------------hc--------c-----h
Q 004735 575 RLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLS------MLRA--------------ET--------H-----K 619 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~------~~~~--------------~~--------~-----~ 619 (732)
++.|+|||+||.+++.++. +|++++++|++++..... .... .. . .
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999988775 699999999888642110 0000 00 0 0
Q ss_pred hhhhhhhhhcC------------------C---hhhhhh-------cCccccCCCCCCCEEEEEeCCCCccChHHH-HHH
Q 004735 620 FESRYIDNLVG------------------S---EKDYYE-------KSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKI 670 (732)
Q Consensus 620 ~~~~~~~~~~~------------------~---~~~~~~-------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~ 670 (732)
....++..... . ...+.. .+....+.++++|+|+++|++|..+|+... .++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~ 315 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKY 315 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHH
Confidence 00000000000 0 001110 011234567899999999999999988643 234
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 671 YKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
++.+.+.-.+.++++++++||.. ..+..+++.+.+.+||++
T Consensus 316 ~~~l~~~ip~~~l~~i~~aGH~~-~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 316 FSSLPSQLPNVTLYVLEGVGHCP-HDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred HHhhhccCCceEEEEcCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 45555444467999999999964 557788999999999875
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=142.40 Aligned_cols=203 Identities=13% Similarity=0.105 Sum_probs=124.2
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||++++.. ..+......+.+.||.|+++|+||.+..... .... ....+++..+.+..++++. +.+
T Consensus 25 ~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~---~~~~--~~~~~~~~~~~~~~~~~~~--~~~ 96 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLGCGYSDQP---DDSD--ELWTIDYFVDELEEVREKL--GLD 96 (288)
T ss_pred CCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCC---Cccc--ccccHHHHHHHHHHHHHHc--CCC
Confidence 477899999855432 2334455555666999999999976543211 0000 0123566666666666553 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc----hh---hh------------------hhhhhh
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH----KF---ES------------------RYIDNL 628 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~----~~---~~------------------~~~~~~ 628 (732)
++.++|||+||.+++.++. +|++++++++.++............ .+ .. ......
T Consensus 97 ~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (288)
T TIGR01250 97 KFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEVF 176 (288)
T ss_pred cEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 7999999999999999988 9999999998887543221100000 00 00 000000
Q ss_pred c----C----------------Chhhh---------------hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHH
Q 004735 629 V----G----------------SEKDY---------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673 (732)
Q Consensus 629 ~----~----------------~~~~~---------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (732)
. . ....+ ...+....+.++++|+|+++|++|.+ ++.....+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~~ 255 (288)
T TIGR01250 177 YHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAREMQEL 255 (288)
T ss_pred HHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHHHHHHh
Confidence 0 0 00000 00011223567889999999999984 66666666555
Q ss_pred HHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 674 LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 674 l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+. +.++++++++||.... +...++.+.+.+|++
T Consensus 256 ~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 256 IA----GSRLVVFPDGSHMTMI-EDPEVYFKLLSDFIR 288 (288)
T ss_pred cc----CCeEEEeCCCCCCccc-CCHHHHHHHHHHHhC
Confidence 43 4578999999997544 567788888888863
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=140.71 Aligned_cols=181 Identities=19% Similarity=0.266 Sum_probs=117.6
Q ss_pred EEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEE
Q 004735 498 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 577 (732)
Q Consensus 498 vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 577 (732)
||++||.+... ..|...+..| ++||.|+++|+||.+....... ......++..+.+..++++.. .+++.
T Consensus 1 vv~~hG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~l~~~l~~~~--~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDPLAEAL-ARGYRVIAFDLPGHGRSDPPPD------YSPYSIEDYAEDLAELLDALG--IKKVI 69 (228)
T ss_dssp EEEE-STTTTG--GGGHHHHHHH-HTTSEEEEEECTTSTTSSSHSS------GSGGSHHHHHHHHHHHHHHTT--TSSEE
T ss_pred eEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEecCCccccccccc------cCCcchhhhhhhhhhcccccc--ccccc
Confidence 79999984443 6677788888 5899999999998665432211 112334555555555555422 37899
Q ss_pred EEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH--h----hcch-----------hhhhhhhhhcC---------
Q 004735 578 ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR--A----ETHK-----------FESRYIDNLVG--------- 630 (732)
Q Consensus 578 i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~--~----~~~~-----------~~~~~~~~~~~--------- 630 (732)
++|||+||.+++.++. +|++++++++.+|........ . .... +....+.....
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 9999999999999998 999999999999988643221 0 0000 00000000000
Q ss_pred C-h----hh----hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 631 S-E----KD----YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 631 ~-~----~~----~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
. . +. +...+....+.++++|+++++|++|.+++.....++.+.+. ++++++++++||.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLP----NAELVVIPGAGHFL 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHST----TEEEEEETTSSSTH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCcc
Confidence 0 0 00 01122334567789999999999999998766666665543 67999999999974
|
... |
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=136.63 Aligned_cols=182 Identities=24% Similarity=0.328 Sum_probs=126.4
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCC-CEEEEEcCCCCCccCCccc------HHHHHHHHCCCEEEEEcCCCCC
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKP-PLLVKSHGGPTSEARGILN------LSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~-P~vl~~HGg~~~~~~~~~~------~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
++|.....|.++.+.+|.|++.+ +++++ |+|||+||++.......-. ..+-..-+-+|-|++|.|.-
T Consensus 163 ~~f~d~~tgneLkYrly~Pkdy~----pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~-- 236 (387)
T COG4099 163 VEFYDESTGNELKYRLYTPKDYA----PDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNP-- 236 (387)
T ss_pred eEeeccccCceeeEEEecccccC----CCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccccc--
Confidence 44444447899999999998744 46666 9999999974432221110 01111122356677777531
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHH-HHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 614 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~ 614 (732)
- +.+. ..-.........+.++ -+.+++.+|.+||.++|.|+||+.++.++. +|+.|.++++++|-.|-...
T Consensus 237 i----f~d~--e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v~l- 309 (387)
T COG4099 237 I----FADS--EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRVYL- 309 (387)
T ss_pred c----cccc--ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchhhh-
Confidence 0 0000 0001122344555555 788899999999999999999999999998 99999999999997653211
Q ss_pred hhcchhhhhhhhhhcCChhhhhhcCccccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 615 AETHKFESRYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
.+.+ +.|+.++|+.+|.++|.+++.-++..|+..+.++.+..|.
T Consensus 310 -----------------------------v~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 310 -----------------------------VRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred -----------------------------hhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 1112 4799999999999999999999999999988877777665
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=146.59 Aligned_cols=209 Identities=14% Similarity=0.111 Sum_probs=125.2
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCc-ccH-HHHHHHHHHHHhcCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDV-NDCCSCATFLVGSGKA 571 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~-~D~~~~i~~l~~~~~~ 571 (732)
..|.||++||.++.. ..|......|++ +|.|+++|+||.+...+.. ..... .+. +.+.+.+..+.+. .
T Consensus 104 ~~p~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~-----~~~~~~~~~~~~~~~~i~~~~~~--l 173 (402)
T PLN02894 104 DAPTLVMVHGYGASQ--GFFFRNFDALAS-RFRVIAIDQLGWGGSSRPD-----FTCKSTEETEAWFIDSFEEWRKA--K 173 (402)
T ss_pred CCCEEEEECCCCcch--hHHHHHHHHHHh-CCEEEEECCCCCCCCCCCC-----cccccHHHHHHHHHHHHHHHHHH--c
Confidence 458999999985432 334445566655 5999999999876543221 00000 011 1222233222232 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH---H----HHhhcc-------------------------
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---M----LRAETH------------------------- 618 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~---~----~~~~~~------------------------- 618 (732)
+.+++.|+|||+||++++.++. +|++++++|+.+|..-.. . +.....
T Consensus 174 ~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g 253 (402)
T PLN02894 174 NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGLG 253 (402)
T ss_pred CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhcc
Confidence 4568999999999999999888 999999999887642110 0 000000
Q ss_pred ----hhhhhhhhhh---------cC--Chhhh--------------------------hhcCcc-ccCCCCCCCEEEEEe
Q 004735 619 ----KFESRYIDNL---------VG--SEKDY--------------------------YEKSPI-NFVDKFSCPIILFQG 656 (732)
Q Consensus 619 ----~~~~~~~~~~---------~~--~~~~~--------------------------~~~sp~-~~~~~i~~P~Lii~G 656 (732)
.+...+.... +. ..+.+ ....++ ..+.++++|+++++|
T Consensus 254 p~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~G 333 (402)
T PLN02894 254 PWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIYG 333 (402)
T ss_pred chhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEEe
Confidence 0000000000 00 00000 001122 336778999999999
Q ss_pred CCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCC
Q 004735 657 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 657 ~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
++|.+++ ....++.+.+ +.++++++++++||.. ..++.+.+.+.+.+|++.+++..
T Consensus 334 ~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~-~~E~P~~f~~~l~~~~~~~~~~~ 389 (402)
T PLN02894 334 RHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFV-FLDNPSGFHSAVLYACRKYLSPD 389 (402)
T ss_pred CCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCee-eccCHHHHHHHHHHHHHHhccCC
Confidence 9998654 4554544433 3357899999999964 44678899999999999999853
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=130.54 Aligned_cols=186 Identities=21% Similarity=0.175 Sum_probs=127.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH-hhccCCCc----ccHHHHHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE-RLLGRWGI----VDVNDCCSCATFLV 566 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~-~~~~~~~~----~~~~D~~~~i~~l~ 566 (732)
++..|+||++||.+ .....+-...+.+ .-.+.++.+.-+-.-..+..|.. .....+.. ...+.+.+.++.+.
T Consensus 15 ~p~~~~iilLHG~G--gde~~~~~~~~~~-~P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~ 91 (207)
T COG0400 15 DPAAPLLILLHGLG--GDELDLVPLPELI-LPNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELA 91 (207)
T ss_pred CCCCcEEEEEecCC--CChhhhhhhhhhc-CCCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHH
Confidence 45678999999974 3333333322222 22355555543211111111110 01111111 12344556677777
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCC
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 645 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 645 (732)
++..+|.+|++++|+|.|+.+++.++. +|+.++++++++|..-+... ....
T Consensus 92 ~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~----------------------------~~~~ 143 (207)
T COG0400 92 EEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE----------------------------LLPD 143 (207)
T ss_pred HHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc----------------------------cccc
Confidence 788899999999999999999999988 99999999999997543210 0011
Q ss_pred CCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 646 ~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.-.+|+|++||+.|++||...+.++.+.|++.|.+++.++++ .||.+. .+.++.+.+|+.+.+
T Consensus 144 ~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~~~ 206 (207)
T COG0400 144 LAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLANTL 206 (207)
T ss_pred cCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHhcc
Confidence 224899999999999999999999999999999999999999 799875 466778888988764
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-14 Score=140.87 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=121.3
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+. ....|......|. .+|.|+++|+||.+..... ...+.+++.+ .+.+.. .+
T Consensus 4 ~~~iv~~HG~~~--~~~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~~---~~~~~~---~~ 65 (245)
T TIGR01738 4 NVHLVLIHGWGM--NAEVFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAAE---AIAAQA---PD 65 (245)
T ss_pred CceEEEEcCCCC--chhhHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHHH---HHHHhC---CC
Confidence 378999999743 3445666677665 4699999999986653211 1123444443 333331 26
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH-----------HHhh----c----chhhhhhhh-hhcC---
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-----------LRAE----T----HKFESRYID-NLVG--- 630 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~-----------~~~~----~----~~~~~~~~~-~~~~--- 630 (732)
++.++|||+||++++.++. +|++++++|++++...+.. .... . ......+.. ...+
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPT 145 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 8999999999999999988 9999999998866432100 0000 0 000000000 0000
Q ss_pred ----------------Ch--h-------hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 631 ----------------SE--K-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 631 ----------------~~--~-------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
.+ . .+...+....+.++++|+|+++|++|..++++..+.+.+.++ ++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 221 (245)
T TIGR01738 146 ARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYI 221 (245)
T ss_pred cchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEE
Confidence 00 0 000111123357889999999999999999988777766554 568999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHH
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
++++||.... +..+++.+.+.+|+
T Consensus 222 ~~~~gH~~~~-e~p~~~~~~i~~fi 245 (245)
T TIGR01738 222 FAKAAHAPFL-SHAEAFCALLVAFK 245 (245)
T ss_pred eCCCCCCccc-cCHHHHHHHHHhhC
Confidence 9999997543 56778888887774
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=145.79 Aligned_cols=213 Identities=11% Similarity=0.056 Sum_probs=126.8
Q ss_pred CCCEEEEEcCCCCCccCCcccHHH---HHHHHCCCEEEEEcCCCCCCCChhhHH---hhccCCCccc-HHHHHHHHHHHH
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSI---QYWTSRGWAFVDVNYGGSTGYGREFRE---RLLGRWGIVD-VNDCCSCATFLV 566 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~---~~l~~~G~~v~~~d~rG~~g~g~~~~~---~~~~~~~~~~-~~D~~~~i~~l~ 566 (732)
+.|+||++||+++.... +.+.. ..|...+|.|+++|+||.+........ .....+.... .+|+.+....+.
T Consensus 40 ~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLT 117 (339)
T ss_pred CCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHH
Confidence 45778888886543322 22222 245567899999999987654322110 0001111112 344544444455
Q ss_pred hcCCCCCCcE-EEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH--------HH---hhc----------------
Q 004735 567 GSGKADEKRL-CITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--------LR---AET---------------- 617 (732)
Q Consensus 567 ~~~~~d~~ri-~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~--------~~---~~~---------------- 617 (732)
+... .+++ .|+||||||++++.++. +|++++.+|++++...... .. ...
T Consensus 118 ~~lg--i~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (339)
T PRK07581 118 EKFG--IERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGL 195 (339)
T ss_pred HHhC--CCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH
Confidence 5433 3684 78999999999999998 9999999998865432100 00 000
Q ss_pred ----chh-----hhhhhh---------------------hhcC--Chhhhhh-------c----------CccccCCCCC
Q 004735 618 ----HKF-----ESRYID---------------------NLVG--SEKDYYE-------K----------SPINFVDKFS 648 (732)
Q Consensus 618 ----~~~-----~~~~~~---------------------~~~~--~~~~~~~-------~----------sp~~~~~~i~ 648 (732)
..+ ...++. .... ++..+.. . +....+.+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~ 275 (339)
T PRK07581 196 RAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSIT 275 (339)
T ss_pred HHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCC
Confidence 000 000000 0000 0000000 0 1112356789
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG-EQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+|+|+++|++|..+|+..++.+.+.+. ..+++++++ +||.. ..+...++...+.+|+++++.
T Consensus 276 ~PtLvI~G~~D~~~p~~~~~~l~~~ip----~a~l~~i~~~~GH~~-~~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 276 AKTFVMPISTDLYFPPEDCEAEAALIP----NAELRPIESIWGHLA-GFGQNPADIAFIDAALKELLA 338 (339)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEeCCCCCccc-cccCcHHHHHHHHHHHHHHHh
Confidence 999999999999999988888777664 358999998 89954 346667888899999998874
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=140.50 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=122.1
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|.||++||.+ .....|......|.+ .|.|+++|+||.+.... . .....+++.+ .+.+. ..
T Consensus 12 g~~~ivllHG~~--~~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~------~---~~~~~~~~~~---~l~~~---~~ 73 (256)
T PRK10349 12 GNVHLVLLHGWG--LNAEVWRCIDEELSS-HFTLHLVDLPGFGRSRG------F---GALSLADMAE---AVLQQ---AP 73 (256)
T ss_pred CCCeEEEECCCC--CChhHHHHHHHHHhc-CCEEEEecCCCCCCCCC------C---CCCCHHHHHH---HHHhc---CC
Confidence 346799999974 334566677777754 59999999997654321 1 1122344433 33332 24
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH------H--------HHHh----hcchhhhhhhhh-hcCC--
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL------S--------MLRA----ETHKFESRYIDN-LVGS-- 631 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~------~--------~~~~----~~~~~~~~~~~~-~~~~-- 631 (732)
+++.++|||+||++++.++. +|+++++++++++.... . .+.. ........++.. ..+.
T Consensus 74 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
T PRK10349 74 DKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTET 153 (256)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCch
Confidence 78999999999999999988 99999999988763210 0 0000 000000011100 0000
Q ss_pred -------------------h-------hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 632 -------------------E-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 632 -------------------~-------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
. ..+...+....+.++++|+|+++|++|.++|.+.+..+.+.++ +.++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~ 229 (256)
T PRK10349 154 ARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYI 229 (256)
T ss_pred HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCC----CCeEEE
Confidence 0 0011112223466789999999999999999877766666554 558999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++++||.. ..++.+.+.+.+.+|-+
T Consensus 230 i~~~gH~~-~~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 230 FAKAAHAP-FISHPAEFCHLLVALKQ 254 (256)
T ss_pred eCCCCCCc-cccCHHHHHHHHHHHhc
Confidence 99999965 44677778777777643
|
|
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=143.03 Aligned_cols=220 Identities=15% Similarity=0.091 Sum_probs=131.8
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~ 544 (732)
.+... +|.++++..+.+ ...+.||++||++..... ......+...+|.|+++|+||.+.....
T Consensus 8 ~~~~~-~~~~l~y~~~g~----------~~~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~--- 70 (306)
T TIGR01249 8 YLNVS-DNHQLYYEQSGN----------PDGKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRGCGKSTPH--- 70 (306)
T ss_pred eEEcC-CCcEEEEEECcC----------CCCCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCCCCCCCCC---
Confidence 45554 677787544321 113568999998655322 1233445567899999999976543211
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH----HH-------
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----SM------- 612 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~----~~------- 612 (732)
.. ......+|+.+.+..+.++. +.+++.++|||+||++++.++. +|++++++|+.++.... ..
T Consensus 71 ~~---~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 145 (306)
T TIGR01249 71 AC---LEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGAS 145 (306)
T ss_pred CC---cccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchh
Confidence 00 01123556666667666653 3468999999999999999988 99999998887654311 00
Q ss_pred ---------HHhhc------chhhhhhhhhhcCCh--------hh---hh-------------------------h----
Q 004735 613 ---------LRAET------HKFESRYIDNLVGSE--------KD---YY-------------------------E---- 637 (732)
Q Consensus 613 ---------~~~~~------~~~~~~~~~~~~~~~--------~~---~~-------------------------~---- 637 (732)
+.... ..+...+........ +. +. .
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (306)
T TIGR01249 146 MIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENH 225 (306)
T ss_pred hhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHh
Confidence 00000 000000000000000 00 00 0
Q ss_pred ------cC-----ccccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHH
Q 004735 638 ------KS-----PINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQ 705 (732)
Q Consensus 638 ------~s-----p~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~ 705 (732)
.. -...+.++ ++|+|++||++|.++|+..+.++++.+. +.++++++++||....+ ..++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~----~~~~~ 297 (306)
T TIGR01249 226 YFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFP----EAELKVTNNAGHSAFDP----NNLAA 297 (306)
T ss_pred HHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCCCCCh----HHHHH
Confidence 00 01234556 5899999999999999999888888764 45899999999986543 34566
Q ss_pred HHHHHHHHh
Q 004735 706 QMVFFARVV 714 (732)
Q Consensus 706 ~~~fl~~~l 714 (732)
+.+|+..+|
T Consensus 298 i~~~~~~~~ 306 (306)
T TIGR01249 298 LVHALETYL 306 (306)
T ss_pred HHHHHHHhC
Confidence 666666654
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=138.91 Aligned_cols=198 Identities=16% Similarity=0.162 Sum_probs=121.0
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHH-HHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 574 (732)
|.||++||.+. ....|......|+ .||.|+++|+||.+..... ......+.++.... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~--~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLG--SGADWQALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCC--chhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 78999999743 3345667778887 8999999999986554221 11111234555544 5555544 2457
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh------------------cchhhhhhhhh-h------
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE------------------THKFESRYIDN-L------ 628 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~------------------~~~~~~~~~~~-~------ 628 (732)
++.++|||+||.+++.++. +|+.++++++.++...+...... ...+...+... .
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 8999999999999999998 99999999998875432110000 00000000000 0
Q ss_pred cC--------------Ch----hhhh------hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEE
Q 004735 629 VG--------------SE----KDYY------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684 (732)
Q Consensus 629 ~~--------------~~----~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (732)
.. .. ..+. ..+....+.++++|+|+++|++|..++ ... +.+.+...+.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~~----~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QIA----KEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HHH----HHHHhcCCCCcEE
Confidence 00 00 0000 011223356788999999999997653 222 3344444467899
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 685 EYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 685 ~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
+++++||.+.. ++.+.+.+.+.+|+
T Consensus 226 ~~~~~gH~~~~-e~~~~~~~~i~~~l 250 (251)
T TIGR03695 226 IIANAGHNIHL-ENPEAFAKILLAFL 250 (251)
T ss_pred EEcCCCCCcCc-cChHHHHHHHHHHh
Confidence 99999996543 55567777777776
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=144.39 Aligned_cols=231 Identities=18% Similarity=0.196 Sum_probs=138.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC---------cccHHH---HHHHHCCCEEEEEcCCCC-CC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---------ILNLSI---QYWTSRGWAFVDVNYGGS-TG 537 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~---------~~~~~~---~~l~~~G~~v~~~d~rG~-~g 537 (732)
+|.++++..+-+.+ ....|.||++||.+.+.... .|...+ ..|...+|.|+++|+||. .|
T Consensus 14 ~~~~~~y~~~g~~~-------~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g 86 (351)
T TIGR01392 14 SDVRVAYETYGTLN-------AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYG 86 (351)
T ss_pred CCceEEEEeccccC-------CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCC
Confidence 56677766665532 12347899999975543221 233332 245578999999999983 22
Q ss_pred -CChhhHH-hh---ccCCCcccHHHHHHHHHHHHhcCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH
Q 004735 538 -YGREFRE-RL---LGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL 610 (732)
Q Consensus 538 -~g~~~~~-~~---~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~ 610 (732)
.+.+-.. .. ..+.....++|..+.+..++++.. .++ +.|+||||||.+++.++. +|++++++|++++....
T Consensus 87 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 164 (351)
T TIGR01392 87 STGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLG--IEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARH 164 (351)
T ss_pred CCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcC--CCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcC
Confidence 2211000 00 001112456777777766666543 357 999999999999999988 99999999998875431
Q ss_pred HH----HH----hhc---c---------------hhh-hh------h-----hhhhcC----------------------
Q 004735 611 SM----LR----AET---H---------------KFE-SR------Y-----IDNLVG---------------------- 630 (732)
Q Consensus 611 ~~----~~----~~~---~---------------~~~-~~------~-----~~~~~~---------------------- 630 (732)
.. +. ... . ... .. + +...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 244 (351)
T TIGR01392 165 SAWCIAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESY 244 (351)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHH
Confidence 11 00 000 0 000 00 0 000000
Q ss_pred ------------Chh-------hhhhcCc-------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEE
Q 004735 631 ------------SEK-------DYYEKSP-------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684 (732)
Q Consensus 631 ------------~~~-------~~~~~sp-------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (732)
++. .+...+. ...+++|++|+|+++|++|.++|+..++++.+.++.....++++
T Consensus 245 ~~~~~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~ 324 (351)
T TIGR01392 245 LRYQGDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYV 324 (351)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEE
Confidence 000 0011110 13456788999999999999999999999999998654444444
Q ss_pred Ee-CCCCccCCCcccHHHHHHHHHHHHH
Q 004735 685 EY-EGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 685 ~~-~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
.+ +++||... .+..+++.+.+.+||+
T Consensus 325 ~i~~~~GH~~~-le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 325 EIESPYGHDAF-LVETDQVEELIRGFLR 351 (351)
T ss_pred EeCCCCCcchh-hcCHHHHHHHHHHHhC
Confidence 44 68999643 3667788888888863
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=143.66 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=124.7
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHH-------HHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHH-HHHH
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYW-------TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCA-TFLV 566 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l-------~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~ 566 (732)
.|.||++||++.+...+........+ ...+|.|+++|+||.+...... ...........++++.+.+ ..+.
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~-~~~~~~~~~~~~~~~a~~~~~~l~ 147 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPS-DGLRAAFPRYDYDDMVEAQYRLVT 147 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCC-cCCCCCCCcccHHHHHHHHHHHHH
Confidence 47899999986543322111222222 2568999999999876432110 0000001123456665443 3344
Q ss_pred hcCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEeecCcCC--------HHHH-Hh---hcc-----h------hh
Q 004735 567 GSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD--------LSML-RA---ETH-----K------FE 621 (732)
Q Consensus 567 ~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d--------~~~~-~~---~~~-----~------~~ 621 (732)
++.. .+++. |+||||||++++.++. +|++++++|++++... .... .. ... . ..
T Consensus 148 ~~lg--i~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (360)
T PRK06489 148 EGLG--VKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSL 225 (360)
T ss_pred HhcC--CCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHH
Confidence 4432 35774 8999999999999998 9999999998876421 0000 00 000 0 00
Q ss_pred h----h------------------------hhhhhcC-----Chhhhh-------hcCccccCCCCCCCEEEEEeCCCCc
Q 004735 622 S----R------------------------YIDNLVG-----SEKDYY-------EKSPINFVDKFSCPIILFQGLEDKV 661 (732)
Q Consensus 622 ~----~------------------------~~~~~~~-----~~~~~~-------~~sp~~~~~~i~~P~Lii~G~~D~~ 661 (732)
. . ++..... +...+. ..+....+.+|++|+|+++|++|.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~ 305 (360)
T PRK06489 226 KRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDER 305 (360)
T ss_pred HHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcc
Confidence 0 0 0000000 011110 1112234668899999999999999
Q ss_pred cChHHH--HHHHHHHHhCCCCEEEEEeCCC----CccCCCcccHHHHHHHHHHHHHHHh
Q 004735 662 VPPDQA--RKIYKALKENGLPVALVEYEGE----QHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 662 v~~~~~--~~~~~~l~~~g~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+|++.+ +.+.+.+. +.++++++++ ||.. . +..+.+.+.+.+||+++-
T Consensus 306 ~p~~~~~~~~la~~ip----~a~l~~i~~a~~~~GH~~-~-e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 306 NPPETGVMEAALKRVK----HGRLVLIPASPETRGHGT-T-GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred cChhhHHHHHHHHhCc----CCeEEEECCCCCCCCccc-c-cCHHHHHHHHHHHHHhcc
Confidence 998765 56666554 4589999996 9976 4 688889999999987654
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=122.11 Aligned_cols=197 Identities=17% Similarity=0.240 Sum_probs=136.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC---ccCCcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS---EARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~---~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
+.+.+..+ -.++.+. +.|.. .+..|+.|.+|--|.. .........+..|.++||+++.+||||-+++
T Consensus 5 ~~v~i~Gp--~G~le~~-~~~~~-------~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S 74 (210)
T COG2945 5 PTVIINGP--AGRLEGR-YEPAK-------TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRS 74 (210)
T ss_pred CcEEecCC--cccceec-cCCCC-------CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccc
Confidence 34556654 2334433 34433 3567899998875532 3333344567788999999999999997765
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~ 617 (732)
..+|. .|..+.+|+.++++|+.++.. +..-..+.|+|+|+++++.++. .|+ ....++..|..+...+
T Consensus 75 ~G~fD------~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~df---- 142 (210)
T COG2945 75 QGEFD------NGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAYDF---- 142 (210)
T ss_pred cCccc------CCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCchhh----
Confidence 55443 355679999999999998842 3333478999999999999998 555 5666666666541110
Q ss_pred chhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcc
Q 004735 618 HKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697 (732)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 697 (732)
..+....+|.++++|+.|.++.+....+..+. .+.+++++++++|.|..
T Consensus 143 ------------------------s~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~g-- 191 (210)
T COG2945 143 ------------------------SFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFHG-- 191 (210)
T ss_pred ------------------------hhccCCCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceecc--
Confidence 12334457899999999999988777776554 46689999999997753
Q ss_pred cHHHHHHHHHHHHH
Q 004735 698 NIKFTLEQQMVFFA 711 (732)
Q Consensus 698 ~~~~~~~~~~~fl~ 711 (732)
......+.+.+|+.
T Consensus 192 Kl~~l~~~i~~~l~ 205 (210)
T COG2945 192 KLIELRDTIADFLE 205 (210)
T ss_pred cHHHHHHHHHHHhh
Confidence 34566667777774
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-13 Score=133.83 Aligned_cols=241 Identities=19% Similarity=0.199 Sum_probs=164.0
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+|+|+|+... +||.+++.+ +++++||.+ ---.+.+.|+|||++|+|++-..+... ...+||+++.++|+
T Consensus 50 GD~IiFt~~D--dlWe~slk~--g~~~ritS~----lGVvnn~kf~pdGrkvaf~rv~~~ss~--~taDly~v~~e~Ge- 118 (668)
T COG4946 50 GDRIIFTCCD--DLWEYSLKD--GKPLRITSG----LGVVNNPKFSPDGRKVAFSRVMLGSSL--QTADLYVVPSEDGE- 118 (668)
T ss_pred CcEEEEEech--HHHHhhhcc--CCeeEEecc----cceeccccCCCCCcEEEEEEEEecCCC--ccccEEEEeCCCCc-
Confidence 6799999644 499999998 999999987 234577899999999999654332211 14799999999999
Q ss_pred cccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 234 QEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 234 ~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
++++| -|..|..-.-|+|||+-|+++..-.+-..| +.||.+..+ +++...+.+.+. ... .-.||
T Consensus 119 --~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~--~~lYkv~~d-g~~~e~LnlGpa---------thi-v~~dg 183 (668)
T COG4946 119 --AKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQW--TELYKVNVD-GIKTEPLNLGPA---------THI-VIKDG 183 (668)
T ss_pred --EEEEEEeccccceeeccCCCCCEEEEeccCCCcccc--eeeeEEccC-CceeeeccCCce---------eeE-EEeCC
Confidence 89998 344454556799999988877644433223 468888877 554422221111 112 22566
Q ss_pred cEEEEEec---------cCC-eeeEEEEeccCC-eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 313 ELFFVTDR---------KNG-FWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 313 ~l~~~~~~---------~~g-~~~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
.++.-.+. +.| ...||. ..++| ..+.+...+..++.|.-+ ++++||.++.+|..
T Consensus 184 ~ivigRntydLP~WK~YkGGtrGklWi-s~d~g~tFeK~vdl~~~vS~PmIV--------------~~RvYFlsD~eG~G 248 (668)
T COG4946 184 IIVIGRNTYDLPHWKGYKGGTRGKLWI-SSDGGKTFEKFVDLDGNVSSPMIV--------------GERVYFLSDHEGVG 248 (668)
T ss_pred EEEEccCcccCcccccccCCccceEEE-EecCCcceeeeeecCCCcCCceEE--------------cceEEEEecccCcc
Confidence 43332221 012 234664 34444 566666665555555533 57899999999999
Q ss_pred EEEEEECCCCceEEeccC-CCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 382 YLGILDDFGHSLSLLDIP-FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 382 ~ly~~~~~~~~~~~lt~~-~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
+||.+|++++.+++-|.- +.....+..++++++|..++ .||++|.++..+++|.
T Consensus 249 nlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~G-----dIylydP~td~lekld 303 (668)
T COG4946 249 NLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAG-----DIYLYDPETDSLEKLD 303 (668)
T ss_pred ceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCC-----cEEEeCCCcCcceeee
Confidence 999999999999888763 33344556778888887763 6999999998887775
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=143.27 Aligned_cols=217 Identities=16% Similarity=0.194 Sum_probs=134.4
Q ss_pred CCEEEEEcCCCCCccCCc-----------ccHHH---HHHHHCCCEEEEEcCCCC-CCC-ChhhHHh-----hccCCCcc
Q 004735 495 PPLLVKSHGGPTSEARGI-----------LNLSI---QYWTSRGWAFVDVNYGGS-TGY-GREFRER-----LLGRWGIV 553 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~-----------~~~~~---~~l~~~G~~v~~~d~rG~-~g~-g~~~~~~-----~~~~~~~~ 553 (732)
.|.||++||.+.+..... |..++ ..+...+|.|+++|++|. ++. +.+.... ....+...
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 589999999865543211 22222 133356899999999983 222 1110000 00011234
Q ss_pred cHHHHHHHHHHHHhcCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH----HH-------hhcch-
Q 004735 554 DVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM----LR-------AETHK- 619 (732)
Q Consensus 554 ~~~D~~~~i~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~----~~-------~~~~~- 619 (732)
.++|..+.+..++++.. .++ +.++||||||.+++.++. +|++++++|++++...... +. .....
T Consensus 128 ~~~~~~~~~~~~l~~l~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 205 (379)
T PRK00175 128 TIRDWVRAQARLLDALG--ITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQNIAFNEVARQAILADPDW 205 (379)
T ss_pred CHHHHHHHHHHHHHHhC--CCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHHHHHHHHHHHHHHhCCCC
Confidence 56777777777766643 356 589999999999999988 9999999999886542110 00 00000
Q ss_pred -----------------hhh-----hh-----hhhhcC---------------------------------Chhhhh---
Q 004735 620 -----------------FES-----RY-----IDNLVG---------------------------------SEKDYY--- 636 (732)
Q Consensus 620 -----------------~~~-----~~-----~~~~~~---------------------------------~~~~~~--- 636 (732)
... .+ +...+. ++..|.
T Consensus 206 ~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~ 285 (379)
T PRK00175 206 HGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFDANSYLYLT 285 (379)
T ss_pred CCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccCchHHHHHH
Confidence 000 00 000000 000000
Q ss_pred ----hcC--------ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC-CCCccCCCcccHHHHH
Q 004735 637 ----EKS--------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE-GEQHGFRKAENIKFTL 703 (732)
Q Consensus 637 ----~~s--------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~-~~gH~~~~~~~~~~~~ 703 (732)
..+ -...+.+|++|+|+++|++|.++|++.++++.+.+...+..+++++++ ++||... .+...++.
T Consensus 286 ~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~ 364 (379)
T PRK00175 286 RALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYG 364 (379)
T ss_pred HHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHH
Confidence 000 012346789999999999999999999999999998877677888775 8999643 36667888
Q ss_pred HHHHHHHHHHh
Q 004735 704 EQQMVFFARVV 714 (732)
Q Consensus 704 ~~~~~fl~~~l 714 (732)
+.+.+||.+.-
T Consensus 365 ~~L~~FL~~~~ 375 (379)
T PRK00175 365 RLVRAFLERAA 375 (379)
T ss_pred HHHHHHHHhhh
Confidence 88899988754
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=134.80 Aligned_cols=199 Identities=17% Similarity=0.119 Sum_probs=122.1
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+. ....|......|. ++|.|+++|+||.+..+... . .....++..+.+..++++. +.+
T Consensus 34 ~~~iv~lHG~~~--~~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~------~-~~~~~~~~~~~~~~~~~~~--~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPT--WSFLYRDIIVALR-DRFRCVAPDYLGFGLSERPS------G-FGYQIDEHARVIGEFVDHL--GLD 101 (286)
T ss_pred CCEEEEECCCCc--cHHHHHHHHHHHh-CCcEEEEECCCCCCCCCCCC------c-cccCHHHHHHHHHHHHHHh--CCC
Confidence 378999999853 2334555666664 46999999999876543211 0 0134677777777777763 446
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH----H--HH---Hhhcc---h------hhhhhhhhhc-C--Ch
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----S--ML---RAETH---K------FESRYIDNLV-G--SE 632 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~----~--~~---~~~~~---~------~~~~~~~~~~-~--~~ 632 (732)
++.++|||+||.+++.++. +|++++++|+.++..-. . .+ ..... . +...++.... . ..
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEHRPSS 181 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccCCCCH
Confidence 8999999999999999887 99999999987664310 0 00 00000 0 0000000000 0 00
Q ss_pred ---hhhhh--------------------cCc-ccc----CC--CCCCCEEEEEeCCCCccChH-HHHHHHHHHHhCCCCE
Q 004735 633 ---KDYYE--------------------KSP-INF----VD--KFSCPIILFQGLEDKVVPPD-QARKIYKALKENGLPV 681 (732)
Q Consensus 633 ---~~~~~--------------------~sp-~~~----~~--~i~~P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g~~~ 681 (732)
..+.. ..+ +.. +. .+++|+|+++|++|..+++. ..+.+.+.+. +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip----~~ 257 (286)
T PRK03204 182 AVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFP----DH 257 (286)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcC----CC
Confidence 00000 000 000 11 12799999999999988655 3455555554 45
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 682 ALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 682 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
++++++++||.. ..+..+++.+.+.+||
T Consensus 258 ~~~~i~~aGH~~-~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 258 VLVELPNAKHFI-QEDAPDRIAAAIIERF 285 (286)
T ss_pred eEEEcCCCcccc-cccCHHHHHHHHHHhc
Confidence 899999999975 4477788888888886
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-13 Score=128.54 Aligned_cols=233 Identities=22% Similarity=0.213 Sum_probs=144.0
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEc-CCCCC---C
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVN-YGGST---G 537 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d-~rG~~---g 537 (732)
..+|.. +|...++++|.|... ..+.|+||++||+.++..... ...+-......||.|+.|| +.+.. +
T Consensus 37 ~~s~~~--~g~~r~y~l~vP~g~------~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~ 108 (312)
T COG3509 37 VASFDV--NGLKRSYRLYVPPGL------PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANG 108 (312)
T ss_pred cccccc--CCCccceEEEcCCCC------CCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCc
Confidence 345555 688889999999873 445599999999754432221 1122333445699999996 33221 0
Q ss_pred CChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh
Q 004735 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE 616 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~ 616 (732)
.+..+. .....-+..++..+.+++..|+.++.+|++||.|.|.|.||.|+.++++ +|++|.++..+++......-...
T Consensus 109 ~~~~~~-p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~~~ 187 (312)
T COG3509 109 CGNWFG-PADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVACTP 187 (312)
T ss_pred ccccCC-cccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcccCC
Confidence 111110 1111224456888999999999999999999999999999999999999 99999999998886521100000
Q ss_pred cchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC-------------------
Q 004735 617 THKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN------------------- 677 (732)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~------------------- 677 (732)
.+-+..+. .--..+|..-...=..| |.+|..|..++..+..+..+.+...
T Consensus 188 -----~rp~~~m~----~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~~ 256 (312)
T COG3509 188 -----PRPVSVMA----FHGTADPLNPYHGGGVP--IGRGQRDGVVSAADLAARWAAVNGCQAGPDTAELPDVGDGTDYD 256 (312)
T ss_pred -----CCchhHHH----hcCCCCCCCCCCCCCcc--cccccccccccHHHHHHHHHHhcCCCCCCcccccCCCcccceee
Confidence 00000000 00012222222222234 7888888877666555555554322
Q ss_pred ----CCCEEEEEeCCCCccCCCccc-----------HHHHHHHHHHHHHHHhC
Q 004735 678 ----GLPVALVEYEGEQHGFRKAEN-----------IKFTLEQQMVFFARVVG 715 (732)
Q Consensus 678 ----g~~~~~~~~~~~gH~~~~~~~-----------~~~~~~~~~~fl~~~l~ 715 (732)
+..++++.+.+.||.+..... -....+.+.+||.++-+
T Consensus 257 ~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~R 309 (312)
T COG3509 257 TCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHRR 309 (312)
T ss_pred ccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhccc
Confidence 246889999999998754222 12356778888887654
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-14 Score=141.73 Aligned_cols=213 Identities=21% Similarity=0.210 Sum_probs=114.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC----------------CcccHHHHHHHHC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR----------------GILNLSIQYWTSR 523 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~----------------~~~~~~~~~l~~~ 523 (732)
+.|.+.|... ++..++++++.|++ ..++.|.||++||-+..-.. .........|+++
T Consensus 87 ~~EKv~f~~~-p~~~vpaylLvPd~------~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~ 159 (390)
T PF12715_consen 87 TREKVEFNTT-PGSRVPAYLLVPDG------AKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR 159 (390)
T ss_dssp EEEEEEE--S-TTB-EEEEEEEETT--------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred EEEEEEEEcc-CCeeEEEEEEecCC------CCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence 4578889887 89999999999987 25678999999984221100 0012357789999
Q ss_pred CCEEEEEcCCCCCCCChhh---------HHhh-------ccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHH
Q 004735 524 GWAFVDVNYGGSTGYGREF---------RERL-------LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587 (732)
Q Consensus 524 G~~v~~~d~rG~~g~g~~~---------~~~~-------~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~ 587 (732)
||+|+++|..|-+..+..- ...+ -..+......|...+++||.+++.+|++||+++|+|+||+.
T Consensus 160 GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 160 GYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp TSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 9999999988754432210 0000 01112223556777999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEEeecCcCCHHHHHhh-c---c----hh---hhhhhhhhcCChhhhhhcCccccCCCC-CCCEEEEE
Q 004735 588 TLAALAFRDTFKAGASLYGVADLSMLRAE-T---H----KF---ESRYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQ 655 (732)
Q Consensus 588 a~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~---~----~~---~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~ 655 (732)
++++++-.++|+++|+.+-+......... + . .+ ...++..++...+ +. .-++-+ ..|+|++.
T Consensus 240 a~~LaALDdRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D----~P--dIasliAPRPll~~n 313 (390)
T PF12715_consen 240 AWWLAALDDRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFD----FP--DIASLIAPRPLLFEN 313 (390)
T ss_dssp HHHHHHH-TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC------HH--HHHHTTTTS-EEESS
T ss_pred HHHHHHcchhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCc----cH--HHHHHhCCCcchhhc
Confidence 99999988889998887665444321100 0 0 00 0112222221000 00 001112 36899999
Q ss_pred eCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC
Q 004735 656 GLEDKVVPPDQARKIYKALKENGLPVALVEYEG 688 (732)
Q Consensus 656 G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (732)
|..|..+|. .++-|+... ..-+++++.||+
T Consensus 314 G~~Dklf~i--V~~AY~~~~-~p~n~~~~~~p~ 343 (390)
T PF12715_consen 314 GGKDKLFPI--VRRAYAIMG-APDNFQIHHYPK 343 (390)
T ss_dssp -B-HHHHHH--HHHHHHHTT--GGGEEE---GG
T ss_pred CCcccccHH--HHHHHHhcC-CCcceEEeeccc
Confidence 999988755 334444322 234688888885
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-13 Score=140.09 Aligned_cols=205 Identities=12% Similarity=0.112 Sum_probs=129.8
Q ss_pred EEEEEcCCCCCcc---CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 497 LLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 497 ~vl~~HGg~~~~~---~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
.||++||...... .......+.+|+++||.|+++|++|.+. +.. ...+.....+|+.++++++.++. ..
T Consensus 64 pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~---s~~---~~~~~d~~~~~~~~~v~~l~~~~--~~ 135 (350)
T TIGR01836 64 PLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDR---ADR---YLTLDDYINGYIDKCVDYICRTS--KL 135 (350)
T ss_pred cEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCH---HHh---cCCHHHHHHHHHHHHHHHHHHHh--CC
Confidence 3888898521111 1123568899999999999999986432 111 00111111345788899998874 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH----h---h------------cc------------h--
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR----A---E------------TH------------K-- 619 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~----~---~------------~~------------~-- 619 (732)
+++.++|||+||.+++.++. +|++++++++.++..++.... . . .. .
T Consensus 136 ~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~ 215 (350)
T TIGR01836 136 DQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFS 215 (350)
T ss_pred CcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcch
Confidence 68999999999999999887 999999999998876542100 0 0 00 0
Q ss_pred -hhhhhhh--hhcCChh---hhh------h-cCc-----------------------------cccCCCCCCCEEEEEeC
Q 004735 620 -FESRYID--NLVGSEK---DYY------E-KSP-----------------------------INFVDKFSCPIILFQGL 657 (732)
Q Consensus 620 -~~~~~~~--~~~~~~~---~~~------~-~sp-----------------------------~~~~~~i~~P~Lii~G~ 657 (732)
....+.. ....+++ .|. . ..+ ...++++++|+|+++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~ 295 (350)
T TIGR01836 216 LGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAE 295 (350)
T ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecC
Confidence 0000000 0001110 000 0 000 11255688999999999
Q ss_pred CCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC--CCcccHHHHHHHHHHHHHH
Q 004735 658 EDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF--RKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 658 ~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~--~~~~~~~~~~~~~~~fl~~ 712 (732)
+|.++|+..+..+++.+.. ..+++++++ +||.. ..+...++++..+.+||.+
T Consensus 296 ~D~i~~~~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 296 RDHLVPPDASKALNDLVSS--EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CCCcCCHHHHHHHHHHcCC--CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 9999999999988887754 356888888 46753 2334567889999999875
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-13 Score=141.44 Aligned_cols=196 Identities=16% Similarity=0.197 Sum_probs=120.5
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcc-cHHHHHHHHHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~~d~~ 574 (732)
|.||++||.+.+ ...|......|+ .+|.|+++|++|.+.+..... .+... ..+|+.+.++.+. .+
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~~-----~~~~~~~a~~l~~~i~~~~------~~ 152 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLGFGWSDKALI-----EYDAMVWRDQVADFVKEVV------KE 152 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCCCCCCCccc-----ccCHHHHHHHHHHHHHHhc------cC
Confidence 558899997443 344555566665 469999999998765443211 11110 1234444444432 36
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH------------------H-HHhhcc----hh----------
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------------------M-LRAETH----KF---------- 620 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~------------------~-~~~~~~----~~---------- 620 (732)
++.++|||+||++++.++. +|+++++++++++...+. . ...... ..
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAK 232 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999998 999999999886532110 0 000000 00
Q ss_pred ----hhhhhhhhcC------------------Ch---hh-hh----------hcCccccCCCCCCCEEEEEeCCCCccCh
Q 004735 621 ----ESRYIDNLVG------------------SE---KD-YY----------EKSPINFVDKFSCPIILFQGLEDKVVPP 664 (732)
Q Consensus 621 ----~~~~~~~~~~------------------~~---~~-~~----------~~sp~~~~~~i~~P~Lii~G~~D~~v~~ 664 (732)
........+. ++ +. +. ..+....++++++|+|+++|++|.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 233 QPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred CHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 0000000000 00 00 00 0111223567899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 665 DQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 665 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
..+.++.+.+. +.+++++ ++||.. ..+..+++.+.+.+|++
T Consensus 313 ~~~~~l~~~~p----~a~l~~i-~~GH~~-~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYP----DTTLVNL-QAGHCP-HDEVPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCC----CCEEEEe-CCCCCc-cccCHHHHHHHHHHHHh
Confidence 88887777654 3477778 589965 45778888899999875
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.3e-13 Score=141.76 Aligned_cols=198 Identities=13% Similarity=0.136 Sum_probs=122.9
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|.||++||.+.. ...|......|.. +|.|+++|++|.+..... ....+.+++.+.+..++++ ++.
T Consensus 130 ~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~~ 196 (371)
T PRK14875 130 DGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LGI 196 (371)
T ss_pred CCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCC
Confidence 35789999997433 3445555666654 599999999976654211 0123466777777666665 345
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH--------HHhh-cchhhhhhhhhhcC-------------
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--------LRAE-THKFESRYIDNLVG------------- 630 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~--------~~~~-~~~~~~~~~~~~~~------------- 630 (732)
.+++++|||+||++++.++. +|++++++++.+|...... +... .......++...+.
T Consensus 197 ~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (371)
T PRK14875 197 ERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVEDL 276 (371)
T ss_pred ccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHHH
Confidence 68999999999999998888 8999999999887532110 0000 00000000000000
Q ss_pred -------C-hhhh------------hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004735 631 -------S-EKDY------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690 (732)
Q Consensus 631 -------~-~~~~------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~g 690 (732)
. ...+ ...+....+.++++|+|+++|++|..+|+.++..+. ..+++.+++++|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~~g 349 (371)
T PRK14875 277 LKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPGAG 349 (371)
T ss_pred HHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCCCC
Confidence 0 0000 001112245678999999999999999987665432 146889999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHH
Q 004735 691 HGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 691 H~~~~~~~~~~~~~~~~~fl~~ 712 (732)
|... -++.+.+.+.+.+||++
T Consensus 350 H~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 350 HMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred CChh-hhCHHHHHHHHHHHhcc
Confidence 9653 35556666667777653
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-12 Score=126.68 Aligned_cols=215 Identities=13% Similarity=0.195 Sum_probs=133.4
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC--CcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR--GILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~--~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
.+.++++ ...+.++++.|.. .++.|+||++||.+..... ..+...+..|+++||.|+++|+||.+....
T Consensus 2 ~~~l~~~--~g~~~~~~~~p~~-------~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g 72 (266)
T TIGR03101 2 PFFLDAP--HGFRFCLYHPPVA-------VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAG 72 (266)
T ss_pred CEEecCC--CCcEEEEEecCCC-------CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Confidence 3556664 4446678887764 3446899999997433222 234456788999999999999998654322
Q ss_pred hhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcch
Q 004735 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHK 619 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~ 619 (732)
.... ..+. ...+|+.++++++.+.+ ..+++++|||+||.+++.++. +|++++++|+.+|+.+...+....-.
T Consensus 73 ~~~~---~~~~-~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lr 145 (266)
T TIGR03101 73 DFAA---ARWD-VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLR 145 (266)
T ss_pred cccc---CCHH-HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHH
Confidence 2111 1111 12688889999998763 468999999999999998887 89999999999998875544332111
Q ss_pred hhh--hh-----------hh-hhc--------C---ChhhhhhcCccccCCC--CCCCEEEEEeCCC-CccChHHHHHHH
Q 004735 620 FES--RY-----------ID-NLV--------G---SEKDYYEKSPINFVDK--FSCPIILFQGLED-KVVPPDQARKIY 671 (732)
Q Consensus 620 ~~~--~~-----------~~-~~~--------~---~~~~~~~~sp~~~~~~--i~~P~Lii~G~~D-~~v~~~~~~~~~ 671 (732)
+.. +. +. ... | .++.-....-+..... -..++|++.-..+ .-.......++.
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (266)
T TIGR03101 146 LRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPKNCPVHWFEVRPEEGATLSPVFSRLG 225 (266)
T ss_pred HHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCCCCceEEEEeccccCCCCCHHHHHHH
Confidence 100 00 00 000 0 0000001100111101 1456788766432 122334567899
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCC
Q 004735 672 KALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 672 ~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
+++++.|+.++...|++. .|..
T Consensus 226 ~~~~~~g~~v~~~~~~~~--~~~~ 247 (266)
T TIGR03101 226 EQWVQSGVEVTVDLVPGP--AFWQ 247 (266)
T ss_pred HHHHHcCCeEeeeecCCc--hhhc
Confidence 999999999999999987 4544
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-13 Score=123.15 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=125.0
Q ss_pred ccHHHHHHHHCCCEEEEEcC-CC---CCCCChhhHHh-hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHH
Q 004735 513 LNLSIQYWTSRGWAFVDVNY-GG---STGYGREFRER-LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587 (732)
Q Consensus 513 ~~~~~~~l~~~G~~v~~~d~-rG---~~g~g~~~~~~-~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~ 587 (732)
.+..+..++..||.|++||+ +| +.+.-.+-.+. ..+.-......|+.+.++||..++ +..+|+++|+++||-+
T Consensus 56 ~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~ 133 (242)
T KOG3043|consen 56 TREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKV 133 (242)
T ss_pred HHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceE
Confidence 34567778889999999995 66 22211111111 111112234789999999999775 5789999999999998
Q ss_pred HHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHH
Q 004735 588 TLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQ 666 (732)
Q Consensus 588 a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (732)
+..+.. .+ .|.++++.+|..-= ...+.++++|+|+++|+.|..+|+..
T Consensus 134 vv~~~~~~~-~f~a~v~~hps~~d------------------------------~~D~~~vk~Pilfl~ae~D~~~p~~~ 182 (242)
T KOG3043|consen 134 VVTLSAKDP-EFDAGVSFHPSFVD------------------------------SADIANVKAPILFLFAELDEDVPPKD 182 (242)
T ss_pred EEEeeccch-hheeeeEecCCcCC------------------------------hhHHhcCCCCEEEEeecccccCCHHH
Confidence 877776 55 79999998885310 12345678999999999999999999
Q ss_pred HHHHHHHHHhCCC-CEEEEEeCCCCccCCC-------c---ccHHHHHHHHHHHHHHHhC
Q 004735 667 ARKIYKALKENGL-PVALVEYEGEQHGFRK-------A---ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 667 ~~~~~~~l~~~g~-~~~~~~~~~~gH~~~~-------~---~~~~~~~~~~~~fl~~~l~ 715 (732)
..++-+.+++... ..++.+|++.+|+|.. | ...++.+..+++||++++.
T Consensus 183 v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 183 VKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred HHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 9899888887542 3579999999999852 2 2356778889999999873
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=130.47 Aligned_cols=191 Identities=13% Similarity=0.051 Sum_probs=115.8
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+.+. ..|......| .+|.|+++|+||.+...... ...+++..+.+..++++. +.++
T Consensus 3 p~vvllHG~~~~~--~~w~~~~~~l--~~~~vi~~D~~G~G~S~~~~---------~~~~~~~~~~l~~~l~~~--~~~~ 67 (242)
T PRK11126 3 PWLVFLHGLLGSG--QDWQPVGEAL--PDYPRLYIDLPGHGGSAAIS---------VDGFADVSRLLSQTLQSY--NILP 67 (242)
T ss_pred CEEEEECCCCCCh--HHHHHHHHHc--CCCCEEEecCCCCCCCCCcc---------ccCHHHHHHHHHHHHHHc--CCCC
Confidence 6799999985443 4666677766 37999999999876543211 113444444444444442 3479
Q ss_pred EEEEEcChHHHHHHHHHh-CCC-cceEEEeecCcCCH---HH----HH------hhc-----chhhhhhhh-hh---cCC
Q 004735 576 LCITGGSAGGYTTLAALA-FRD-TFKAGASLYGVADL---SM----LR------AET-----HKFESRYID-NL---VGS 631 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~-~~~a~v~~~~~~d~---~~----~~------~~~-----~~~~~~~~~-~~---~~~ 631 (732)
+.++|||+||.+++.++. +++ +++++++.++.... .. .. ... ..+...++. .. ...
T Consensus 68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (242)
T PRK11126 68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLNA 147 (242)
T ss_pred eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccCc
Confidence 999999999999999988 755 49999987754321 10 00 000 000000000 00 000
Q ss_pred --hhhh----------------hh------cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 632 --EKDY----------------YE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 632 --~~~~----------------~~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
...+ .. .+....+.++++|+++++|++|..+. .+.+.. +.++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~-----~~~~~~i~ 217 (242)
T PRK11126 148 EQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQL-----ALPLHVIP 217 (242)
T ss_pred cHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHHh-----cCeEEEeC
Confidence 0000 00 01112356789999999999998542 222221 46899999
Q ss_pred CCCccCCCcccHHHHHHHHHHHHHH
Q 004735 688 GEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 688 ~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
++||.+ ..+..++..+.+.+|+.+
T Consensus 218 ~~gH~~-~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 218 NAGHNA-HRENPAAFAASLAQILRL 241 (242)
T ss_pred CCCCch-hhhChHHHHHHHHHHHhh
Confidence 999965 446778888888888865
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.1e-12 Score=128.01 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=119.5
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
+..|.||++||... ....|..+...|.++||.|+++|++|.+..... . . ....+++..+.+..++++.. .
T Consensus 16 ~~~p~vvliHG~~~--~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~---~-~---~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISG--GSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSD---A-D---SVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCC--CcCcHHHHHHHHHhCCCEEEEecccCCCCCCCC---c-c---cCCCHHHHHHHHHHHHHhcC-C
Confidence 34589999999743 345677788888889999999999976532110 0 0 11234454444444433321 2
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC------HHHHHhhcchhh------------------------
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD------LSMLRAETHKFE------------------------ 621 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d------~~~~~~~~~~~~------------------------ 621 (732)
.+++.++||||||.+++.++. +|++++++|.+++... ...+........
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIK 165 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeeeC
Confidence 368999999999999999988 9999999999866421 110000000000
Q ss_pred hhhhhhh-cC-Chh---h-hhh------cCcc------ccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEE
Q 004735 622 SRYIDNL-VG-SEK---D-YYE------KSPI------NFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 682 (732)
Q Consensus 622 ~~~~~~~-~~-~~~---~-~~~------~sp~------~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (732)
..+...+ .. .++ . +.. ...+ ....++ ++|+++|.|++|..+|++.++.+.+.+.. .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~----~~ 241 (273)
T PLN02211 166 KEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP----SQ 241 (273)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----cE
Confidence 0000000 00 000 0 000 0011 112234 68999999999999999988888877642 37
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 683 LVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 683 ~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
++.++ +||.. .-+..+++.+.+.+.
T Consensus 242 ~~~l~-~gH~p-~ls~P~~~~~~i~~~ 266 (273)
T PLN02211 242 VYELE-SDHSP-FFSTPFLLFGLLIKA 266 (273)
T ss_pred EEEEC-CCCCc-cccCHHHHHHHHHHH
Confidence 77886 79964 224555555555544
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=132.03 Aligned_cols=206 Identities=20% Similarity=0.253 Sum_probs=131.9
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
...|.||++||... ....|+.....|... |+.|+++|..|. |+. +..+.. ...+..+....+..+..+..
T Consensus 56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G~-g~~-s~~~~~----~~y~~~~~v~~i~~~~~~~~- 126 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPGH-GYS-SPLPRG----PLYTLRELVELIRRFVKEVF- 126 (326)
T ss_pred CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCCC-CcC-CCCCCC----CceehhHHHHHHHHHHHhhc-
Confidence 45688999999843 556666666555554 799999999873 321 111111 11456777777776666543
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEE---eecCcCCHH-----HHHhhcchh-------------------hhh
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGA---SLYGVADLS-----MLRAETHKF-------------------ESR 623 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v---~~~~~~d~~-----~~~~~~~~~-------------------~~~ 623 (732)
.+++.++|||+||++++.+|+ +|+.++..+ +..+..... ........+ ...
T Consensus 127 -~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 127 -VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred -CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 345999999999999999999 999999999 444432110 000000000 000
Q ss_pred hhhhhcC---C----h-----------------h----hhh-----hcCccccCCCCC-CCEEEEEeCCCCccChHHHHH
Q 004735 624 YIDNLVG---S----E-----------------K----DYY-----EKSPINFVDKFS-CPIILFQGLEDKVVPPDQARK 669 (732)
Q Consensus 624 ~~~~~~~---~----~-----------------~----~~~-----~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~ 669 (732)
....... + . + .+. .......+.++. +|+|+++|++|+++|.+.+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~ 285 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEE 285 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHH
Confidence 0000000 0 0 0 000 012223456666 999999999999999987777
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 670 IYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
+.+.+ .++++++++++||.. +.+..+.+...+..|+.+.
T Consensus 286 ~~~~~----pn~~~~~I~~~gH~~-h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 286 LKKKL----PNAELVEIPGAGHLP-HLERPEEVAALLRSFIARL 324 (326)
T ss_pred HHhhC----CCceEEEeCCCCccc-ccCCHHHHHHHHHHHHHHh
Confidence 76665 477999999999965 4488889999999999875
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=127.91 Aligned_cols=207 Identities=13% Similarity=0.099 Sum_probs=124.5
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
...+.+|++||.+.+ ...|......|++ ...|.++|..|.| ++.+.....+.. .......+.++.-...-.
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG~G---~SSRP~F~~d~~-~~e~~fvesiE~WR~~~~-- 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLGFG---RSSRPKFSIDPT-TAEKEFVESIEQWRKKMG-- 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccCCC---CCCCCCCCCCcc-cchHHHHHHHHHHHHHcC--
Confidence 345667889997333 2333344455666 7999999998554 444434333322 223355666665544433
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH-------------HHh-------hcch---------h--
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-------------LRA-------ETHK---------F-- 620 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~-------------~~~-------~~~~---------~-- 620 (732)
.++..|+|||+|||++..++. ||++++..|+.+|..-... +.. ...+ +
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 469999999999999999988 9999999999998632110 000 0000 0
Q ss_pred --hhhhhhhhc----C--Chh---------------------------hhhhcCccccCCCCC--CCEEEEEeCCCCccC
Q 004735 621 --ESRYIDNLV----G--SEK---------------------------DYYEKSPINFVDKFS--CPIILFQGLEDKVVP 663 (732)
Q Consensus 621 --~~~~~~~~~----~--~~~---------------------------~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~ 663 (732)
..++....+ + .++ .+....-+..+..++ +|+++|+|++|. +.
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dW-mD 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDW-MD 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccc-cc
Confidence 000000000 0 000 001111122344455 999999999996 46
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 664 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 664 ~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
.....++...+.. ..++.++++++||.... ++.+...+.++.++++
T Consensus 318 ~~~g~~~~~~~~~--~~~~~~~v~~aGHhvyl-Dnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 318 KNAGLEVTKSLMK--EYVEIIIVPGAGHHVYL-DNPEFFNQIVLEECDK 363 (365)
T ss_pred chhHHHHHHHhhc--ccceEEEecCCCceeec-CCHHHHHHHHHHHHhc
Confidence 6667777776633 35799999999997533 5667777777777764
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-12 Score=134.29 Aligned_cols=179 Identities=12% Similarity=0.101 Sum_probs=109.4
Q ss_pred HHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc-EEEEEcChHHHHHHHHHh-CCC
Q 004735 519 YWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRD 596 (732)
Q Consensus 519 ~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~p~ 596 (732)
.|...+|.|+++|+||.++.. . .. ...++..+.+..+++... .++ +.++||||||++++.++. +|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~---~----~~---~~~~~~a~dl~~ll~~l~--l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSL---D----VP---IDTADQADAIALLLDALG--IARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCCCCCCC---C----CC---CCHHHHHHHHHHHHHHcC--CCcceEEEEECHHHHHHHHHHHHChH
Confidence 354567999999999764321 1 11 123444444444444423 335 579999999999999998 999
Q ss_pred cceEEEeecCcCCHHH----HHh---h----c-------c--hhhhh-----h-----hhhhcC-C-----------hh-
Q 004735 597 TFKAGASLYGVADLSM----LRA---E----T-------H--KFESR-----Y-----IDNLVG-S-----------EK- 633 (732)
Q Consensus 597 ~~~a~v~~~~~~d~~~----~~~---~----~-------~--~~~~~-----~-----~~~~~~-~-----------~~- 633 (732)
+++++|++++...... ... . . . ..... + +...+. . ..
T Consensus 162 ~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T PRK08775 162 RVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAED 241 (343)
T ss_pred hhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHH
Confidence 9999999987532110 000 0 0 0 00000 0 000000 0 00
Q ss_pred --------hhhhcCc-------------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC-CCc
Q 004735 634 --------DYYEKSP-------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG-EQH 691 (732)
Q Consensus 634 --------~~~~~sp-------------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~gH 691 (732)
.....++ ...+.++++|+|+++|++|.++|+....++.+.+.. +.+++++++ +||
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l~~i~~~aGH 318 (343)
T PRK08775 242 YLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSLRVLRSPYGH 318 (343)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeEEEEeCCccH
Confidence 0000000 112567899999999999999999888888777632 458999985 899
Q ss_pred cCCCcccHHHHHHHHHHHHHHH
Q 004735 692 GFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 692 ~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
... .+..+.+.+.+.+||++.
T Consensus 319 ~~~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 319 DAF-LKETDRIDAILTTALRST 339 (343)
T ss_pred HHH-hcCHHHHHHHHHHHHHhc
Confidence 653 367788888889998754
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-11 Score=130.79 Aligned_cols=316 Identities=13% Similarity=0.138 Sum_probs=182.1
Q ss_pred ceEEcCCCcEEEEeecCCCCCceEEEEcCCCC-CCCC-cccCCCCCccccccc-ccCCceeEE--ECCEEEEEeCCCC--
Q 004735 93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKA-GDEP-SDITPKEYAVRTTAQ-EYGGGAFRI--FGDTVIFSNYKDQ-- 165 (732)
Q Consensus 93 ~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~-~~l~~~~~~~~~~~~-~~g~~~~~~--~~~~i~f~~~~~~-- 165 (732)
.|... |+.+||....++ .....++|..... ++.. +.|++. +....-. -..++.+.+ +++.++|.....|
T Consensus 73 ~p~~~-g~~~y~~~~~~~-~~~~~~~r~~~~~~~~~~~evllD~--n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e 148 (414)
T PF02897_consen 73 VPVRR-GGYYYYSRNQGG-KNYPVLYRRKTDEEDGPEEEVLLDP--NELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSE 148 (414)
T ss_dssp --EEE-TTEEEEEEE-SS--SS-EEEEEETTS-TS-C-EEEEEG--GGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSS
T ss_pred ccEEE-CCeEEEEEEcCC-CceEEEEEEecccCCCCceEEEEcc--hHhhccCceEEeeeeeECCCCCEEEEEecCCCCc
Confidence 34434 888888876554 3343566665441 1233 444432 1111111 111223344 4668888765444
Q ss_pred --eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCC--CCCceeEEEEEEcCCCCccccEEccc
Q 004735 166 --RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD--ALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 166 --~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~--~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
.|+++|+++ |+ .+...- ....+..+.|++||+.++|+..+.... ......+||+..+.+.... ...|..
T Consensus 149 ~~~l~v~Dl~t--g~--~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~-d~lvfe 221 (414)
T PF02897_consen 149 WYTLRVFDLET--GK--FLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE-DELVFE 221 (414)
T ss_dssp EEEEEEEETTT--TE--EEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC
T ss_pred eEEEEEEECCC--Cc--CcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHh-CeeEEe
Confidence 699999987 53 222210 012223388999999999988765433 1122489999999886521 124443
Q ss_pred C--CCc-eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCC---ceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 242 G--SDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG---DVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 242 ~--~~~-~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g---~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
+ ..+ ......|+||++|+..+... . ..+++|++|+. ++ ......+....+ .....+... .+.+|
T Consensus 222 ~~~~~~~~~~~~~s~d~~~l~i~~~~~-~---~~s~v~~~d~~-~~~~~~~~~~~l~~~~~----~~~~~v~~~-~~~~y 291 (414)
T PF02897_consen 222 EPDEPFWFVSVSRSKDGRYLFISSSSG-T---SESEVYLLDLD-DGGSPDAKPKLLSPRED----GVEYYVDHH-GDRLY 291 (414)
T ss_dssp -TTCTTSEEEEEE-TTSSEEEEEEESS-S---SEEEEEEEECC-CTTTSS-SEEEEEESSS----S-EEEEEEE-TTEEE
T ss_pred ecCCCcEEEEEEecCcccEEEEEEEcc-c---cCCeEEEEecc-ccCCCcCCcEEEeCCCC----ceEEEEEcc-CCEEE
Confidence 3 233 45678899999887655333 1 23789999998 43 222233333332 112222222 33488
Q ss_pred EEEeccCCeeeEEEEeccCCe---EE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC-C
Q 004735 316 FVTDRKNGFWNLHKWIESNNE---VL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-G 390 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~---~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~-~ 390 (732)
+.++.......|+.+++++.. .+ .|.+...... ...+.. .+++|++...+++..+|+++++. +
T Consensus 292 i~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-------l~~~~~-----~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 292 ILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-------LEDVSL-----FKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-------EEEEEE-----ETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EeeCCCCCCcEEEEecccccccccceeEEcCCCCcee-------EEEEEE-----ECCEEEEEEEECCccEEEEEECCCC
Confidence 888875667889999988754 33 3433321111 111222 56789999999999999999999 7
Q ss_pred CceEEeccCCC-ceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeee
Q 004735 391 HSLSLLDIPFT-DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDF 441 (732)
Q Consensus 391 ~~~~~lt~~~~-~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~ 441 (732)
.....+..+.. .+..+ ..+.+.++|..++...|..+|.+|+++++.+.+++
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 66677766543 34444 34567899999999999999999999999876653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-11 Score=129.50 Aligned_cols=202 Identities=12% Similarity=0.058 Sum_probs=125.7
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.. ...|...+..|+ .+|.|+++|++|.+....... .......++++.+.+..++++. ..+
T Consensus 127 ~~~ivllHG~~~~--~~~w~~~~~~L~-~~~~Via~DlpG~G~S~~p~~----~~~~~ys~~~~a~~l~~~i~~l--~~~ 197 (383)
T PLN03084 127 NPPVLLIHGFPSQ--AYSYRKVLPVLS-KNYHAIAFDWLGFGFSDKPQP----GYGFNYTLDEYVSSLESLIDEL--KSD 197 (383)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCCCCCCCCcc----cccccCCHHHHHHHHHHHHHHh--CCC
Confidence 4789999998543 345666777775 479999999997654322110 0001134556666555555543 235
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH-----HHHHhhc-c----------hhh--hh------------
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL-----SMLRAET-H----------KFE--SR------------ 623 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~-----~~~~~~~-~----------~~~--~~------------ 623 (732)
++.|+|||+||.+++.++. +|++++++|++++.... ....... . ... ..
T Consensus 198 ~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (383)
T PLN03084 198 KVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLRASDKALTSCGPYAMKE 277 (383)
T ss_pred CceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHHHHhhhhcccCccCCCH
Confidence 8999999999999999988 99999999999976421 1000000 0 000 00
Q ss_pred -----hhhhhc--CC-hh----hhhhcC-cc----------ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCC
Q 004735 624 -----YIDNLV--GS-EK----DYYEKS-PI----------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 680 (732)
Q Consensus 624 -----~~~~~~--~~-~~----~~~~~s-p~----------~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (732)
+...+. +. .. .+.... .. ....++++|+|+++|+.|.+++.+..+++.+.. +
T Consensus 278 e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~~-----~ 352 (383)
T PLN03084 278 DDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKSS-----Q 352 (383)
T ss_pred HHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----C
Confidence 000000 00 00 000000 00 001357899999999999999988777766642 4
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 681 VALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 681 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
.++++++++||.. ..+..+++.+.+.+|+.
T Consensus 353 a~l~vIp~aGH~~-~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 353 HKLIELPMAGHHV-QEDCGEELGGIISGILS 382 (383)
T ss_pred CeEEEECCCCCCc-chhCHHHHHHHHHHHhh
Confidence 5899999999965 44778888888888875
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=117.66 Aligned_cols=201 Identities=17% Similarity=0.173 Sum_probs=141.5
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-HHHHHHHHCCCEEEEEcCCCCC
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
..+.+.+.+-- .| .-...+|.|.+ ..|++||+|||.|........ ..+..+..+||+|..++|--++
T Consensus 42 i~r~e~l~Yg~--~g-~q~VDIwg~~~---------~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~ 109 (270)
T KOG4627|consen 42 IIRVEHLRYGE--GG-RQLVDIWGSTN---------QAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCP 109 (270)
T ss_pred ccchhccccCC--CC-ceEEEEecCCC---------CccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCc
Confidence 44455555532 23 44446676744 348999999999876554332 3456677889999999985433
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHHHH
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLR 614 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~ 614 (732)
. ++. -...+.++...++|+.+... ..+++.+.|||.|+.+++.+.+ +..++.++++.+|+++++.+.
T Consensus 110 q-~ht---------L~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~ 178 (270)
T KOG4627|consen 110 Q-VHT---------LEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELS 178 (270)
T ss_pred c-ccc---------HHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHh
Confidence 2 111 11347889999999998743 4567889999999999999887 888999999999999998875
Q ss_pred hhcchhhhhhhhhhcC-ChhhhhhcCc-cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 615 AETHKFESRYIDNLVG-SEKDYYEKSP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~-~~~~~~~~sp-~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
..... .-++ ..+.-...|+ +.....++.|+|+++++.|.---++|.+.+.+++++ ..+..|++.+|.
T Consensus 179 ~te~g-------~dlgLt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~hy 247 (270)
T KOG4627|consen 179 NTESG-------NDLGLTERNAESVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDHY 247 (270)
T ss_pred CCccc-------cccCcccchhhhcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcchh
Confidence 43221 1111 1111222233 234567789999999999987778999999999886 478889999995
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.3e-11 Score=120.93 Aligned_cols=300 Identities=13% Similarity=0.132 Sum_probs=162.7
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEE
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~ 169 (732)
+-...|.+ |+++.|...+ +|+..||..+.+++ +.++|+..+.. ...++.++..++.++|.... .+|+.
T Consensus 38 F~~~~ft~dG~kllF~s~~---dg~~nly~lDL~t~-~i~QLTdg~g~------~~~g~~~s~~~~~~~Yv~~~-~~l~~ 106 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDF---DGNRNLYLLDLATG-EITQLTDGPGD------NTFGGFLSPDDRALYYVKNG-RSLRR 106 (386)
T ss_dssp TTS--B-TTS-EEEEEE-T---TSS-EEEEEETTT--EEEE---SS-B-------TTT-EE-TTSSEEEEEETT-TEEEE
T ss_pred ecCCCcCCCCCEEEEEecc---CCCcceEEEEcccC-EEEECccCCCC------CccceEEecCCCeEEEEECC-CeEEE
Confidence 45778888 8888886654 36668899998876 88889875411 11134455555677777532 47999
Q ss_pred EeCCCCCCCceecCCCCCCCCeE-eeceeecCCCCEEEEEEeccCCC---C----------CCceeEEEEEEcCCCCccc
Q 004735 170 HSIDSKDSSPLPITPDYGEPLVS-YADGIFDPRFNRYVTVREDRRQD---A----------LNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~~~~~-~~~~~~spdG~~l~~~~~~~~~~---~----------~~~~~~l~~~d~~~~~~~~ 235 (732)
+|+++ .+.+.|-..++ ... +.......|+++++.+...+.+. + ......|+.+|+.+|+
T Consensus 107 vdL~T--~e~~~vy~~p~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--- 179 (386)
T PF14583_consen 107 VDLDT--LEERVVYEVPD--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--- 179 (386)
T ss_dssp EETTT----EEEEEE--T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-----
T ss_pred EECCc--CcEEEEEECCc--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc---
Confidence 99998 77766654421 222 33333467899988876543321 1 1236899999999999
Q ss_pred cEEcccCCCceeccccCC-CCCeEEEEeccCCCCCCCc--cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 236 PKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~--~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.+.+.........+.+|| |...|.|.- . .||+. .+||+++.+ ++..+.+..-.. . ..+.--.|+|||
T Consensus 180 ~~~v~~~~~wlgH~~fsP~dp~li~fCH---E-Gpw~~Vd~RiW~i~~d-g~~~~~v~~~~~---~--e~~gHEfw~~DG 249 (386)
T PF14583_consen 180 RKVVFEDTDWLGHVQFSPTDPTLIMFCH---E-GPWDLVDQRIWTINTD-GSNVKKVHRRME---G--ESVGHEFWVPDG 249 (386)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEEEEE-----S-TTTSS-SEEEEETT-S---EESS---T---T--EEEEEEEE-TTS
T ss_pred eeEEEecCccccCcccCCCCCCEEEEec---c-CCcceeceEEEEEEcC-CCcceeeecCCC---C--cccccccccCCC
Confidence 888888888888999999 777788854 1 25654 479999987 444333322111 1 455666799999
Q ss_pred c-EEEEEeccCC-eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEE-------------
Q 004735 313 E-LFFVTDRKNG-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ------------- 377 (732)
Q Consensus 313 ~-l~~~~~~~~g-~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~------------- 377 (732)
+ |+|.+..+.+ ...|+.+|+++++.+.+...+. .+ .+...+ |++ |++.-..
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-----~~-----H~~ss~---Dg~-L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW-----CS-----HFMSSP---DGK-LFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S-----EE-----EEEE-T---TSS-EEEEEE--------------
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc-----ee-----eeEEcC---CCC-EEEecCCCCCccccccccce
Confidence 9 8887764334 4568899999998777653321 10 111110 333 3322111
Q ss_pred -CCEEEEEEEECCCCceEEeccCCC------------ceEEeeEeCCEEEEEEeCCCCCcEEEEEEcC
Q 004735 378 -NGRSYLGILDDFGHSLSLLDIPFT------------DIDNITLGNDCLFVEGASGVEPSSVAKVTLD 432 (732)
Q Consensus 378 -~g~~~ly~~~~~~~~~~~lt~~~~------------~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~ 432 (732)
.+..-||++++..+..+.|..... ....-.+++++.+++.++..++..||.+++.
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 123468889998887766654321 1122246677788888899999999999875
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.7e-12 Score=114.12 Aligned_cols=214 Identities=19% Similarity=0.251 Sum_probs=141.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+++.+.++.+ .+..+.+.+..- +...+||++||.-..-........+..+++.|+-++.+|++|.+...
T Consensus 9 ~~~~ivi~n~-~ne~lvg~lh~t----------gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~ 77 (269)
T KOG4667|consen 9 IAQKIVIPNS-RNEKLVGLLHET----------GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESE 77 (269)
T ss_pred eeeEEEeccC-CCchhhcceecc----------CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcC
Confidence 4566777776 677766655433 34579999999733332233445778888999999999999887765
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh--
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-- 616 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~-- 616 (732)
.++... . +....+|+..+++++.... .---+|+|||-||.+++..+. +++ +.-++-.+|-+|......+
T Consensus 78 gsf~~G---n-~~~eadDL~sV~q~~s~~n---r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRl 149 (269)
T KOG4667|consen 78 GSFYYG---N-YNTEADDLHSVIQYFSNSN---RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERL 149 (269)
T ss_pred CccccC---c-ccchHHHHHHHHHHhccCc---eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhh
Confidence 554322 2 2245799999999996531 122369999999999998888 666 7778888888877655421
Q ss_pred cchhhhhhhh-hhcCC-------hhhhhhcCccc--------cCCC--CCCCEEEEEeCCCCccChHHHHHHHHHHHhCC
Q 004735 617 THKFESRYID-NLVGS-------EKDYYEKSPIN--------FVDK--FSCPIILFQGLEDKVVPPDQARKIYKALKENG 678 (732)
Q Consensus 617 ~~~~~~~~~~-~~~~~-------~~~~~~~sp~~--------~~~~--i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g 678 (732)
...+..+..+ .++.. +..+...+-+. ...+ .+||+|-+||..|.+||.+.+.++++.+..
T Consensus 150 g~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n-- 227 (269)
T KOG4667|consen 150 GEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN-- 227 (269)
T ss_pred cccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC--
Confidence 1111111111 11110 01111111111 1112 359999999999999999999999998874
Q ss_pred CCEEEEEeCCCCccCCCc
Q 004735 679 LPVALVEYEGEQHGFRKA 696 (732)
Q Consensus 679 ~~~~~~~~~~~gH~~~~~ 696 (732)
.++++++|+.|++...
T Consensus 228 --H~L~iIEgADHnyt~~ 243 (269)
T KOG4667|consen 228 --HKLEIIEGADHNYTGH 243 (269)
T ss_pred --CceEEecCCCcCccch
Confidence 4899999999998753
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=125.06 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH----Hhh---cchhhhh--h
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML----RAE---THKFESR--Y 624 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~----~~~---~~~~~~~--~ 624 (732)
.+-+..+++||.+++.++.++|+|+|.|.||.+|+.++. +| .++++|+.+|..-.... ... ....... .
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 455789999999999999999999999999999999999 66 79999999885421110 000 0000000 0
Q ss_pred h-hhhcCChh---hh------hhcCccccCCCCCCCEEEEEeCCCCccChHH-HHHHHHHHHhCCCC--EEEEEeCCCCc
Q 004735 625 I-DNLVGSEK---DY------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGLP--VALVEYEGEQH 691 (732)
Q Consensus 625 ~-~~~~~~~~---~~------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g~~--~~~~~~~~~gH 691 (732)
. ....+... .+ ......-.++++++|+|+++|++|.+.|-.. ++.+.+.|++.|.+ ++++.|+++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 0 00000000 00 0011112366789999999999999988654 55677889998865 78999999999
Q ss_pred cCCCc---------------------------ccHHHHHHHHHHHHHHHhC
Q 004735 692 GFRKA---------------------------ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 692 ~~~~~---------------------------~~~~~~~~~~~~fl~~~l~ 715 (732)
.+..| ...++.++++++||+++|+
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 75321 1356789999999999986
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-11 Score=127.74 Aligned_cols=219 Identities=18% Similarity=0.164 Sum_probs=134.8
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCC----CEEEEEcCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNYGGS 535 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G----~~v~~~d~rG~ 535 (732)
..+.+++.+..-|.+..+++|.|.+.. .+++|+|+++||..+..... .......|...| ++++.+|....
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~-----~~~~PvlyllDG~~w~~~~~-~~~~ld~li~~g~i~P~ivV~id~~~~ 252 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA-----PEERPLAILLDGQFWAESMP-VWPALDSLTHRGQLPPAVYLLIDAIDT 252 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC-----CCCCCEEEEEECHHhhhcCC-HHHHHHHHHHcCCCCceEEEEECCCCc
Confidence 346677777656788899999998732 35789999999976543322 223445566666 45678875322
Q ss_pred CCCChhhHHhhccCCCcccHH-H-HHHHHHHHHhcCC--CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH
Q 004735 536 TGYGREFRERLLGRWGIVDVN-D-CCSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL 610 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~-D-~~~~i~~l~~~~~--~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~ 610 (732)
......+. ....+. . ..+.+.++.+++. .|+++.+|+|+||||+.++.++. +|++|.++++++|.+-+
T Consensus 253 ~~R~~el~-------~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww 325 (411)
T PRK10439 253 THRSQELP-------CNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWW 325 (411)
T ss_pred ccccccCC-------chHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceec
Confidence 11111110 001111 1 1344556666544 47789999999999999999988 99999999999996422
Q ss_pred HHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004735 611 SMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690 (732)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~g 690 (732)
..... .....+. +.+... ....-...++|-+|+.|... ....+++++.|+++|.++++.+++| |
T Consensus 326 ~~~~~---~~~~~l~-------~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-G 389 (411)
T PRK10439 326 PHRGG---QQEGVLL-------EQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-G 389 (411)
T ss_pred CCccC---CchhHHH-------HHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-C
Confidence 11000 0000000 011110 01112245888899998643 5678999999999999999999997 6
Q ss_pred ccCCCcccHHHHHHHHHHHH
Q 004735 691 HGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 691 H~~~~~~~~~~~~~~~~~fl 710 (732)
|.+. .+...+...+.||
T Consensus 390 Hd~~---~Wr~~L~~~L~~l 406 (411)
T PRK10439 390 HDAL---CWRGGLIQGLIDL 406 (411)
T ss_pred cCHH---HHHHHHHHHHHHH
Confidence 9642 3344444444443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=123.85 Aligned_cols=235 Identities=9% Similarity=0.038 Sum_probs=127.3
Q ss_pred EeCCCCCCCceecCCCCCC-CCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc-ee
Q 004735 170 HSIDSKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-YA 247 (732)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~-~~ 247 (732)
.|..+| -+..+||+.+.. ..+.+.+.+|.+||++++|..+..+ ..+||.+|+++++ .+|||.+++. ..
T Consensus 15 ~D~~TG-~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg------~~nly~lDL~t~~---i~QLTdg~g~~~~ 84 (386)
T PF14583_consen 15 IDPDTG-HRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDG------NRNLYLLDLATGE---ITQLTDGPGDNTF 84 (386)
T ss_dssp E-TTT---EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTS------S-EEEEEETTT-E---EEE---SS-B-TT
T ss_pred eCCCCC-ceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCC------CcceEEEEcccCE---EEECccCCCCCcc
Confidence 455664 567899987432 2244577889999999999776432 3799999999999 9999987643 34
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC--CCCc-EEEEEeccCC-
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS--SKGE-LFFVTDRKNG- 323 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws--pDg~-l~~~~~~~~g- 323 (732)
+..+||+++.|+|+. +...|+.+|++ +.+.+.+..++. +| .....|+ .|++ ++........
T Consensus 85 g~~~s~~~~~~~Yv~--------~~~~l~~vdL~-T~e~~~vy~~p~---~~---~g~gt~v~n~d~t~~~g~e~~~~d~ 149 (386)
T PF14583_consen 85 GGFLSPDDRALYYVK--------NGRSLRRVDLD-TLEERVVYEVPD---DW---KGYGTWVANSDCTKLVGIEISREDW 149 (386)
T ss_dssp T-EE-TTSSEEEEEE--------TTTEEEEEETT-T--EEEEEE--T---TE---EEEEEEEE-TTSSEEEEEEEEGGG-
T ss_pred ceEEecCCCeEEEEE--------CCCeEEEEECC-cCcEEEEEECCc---cc---ccccceeeCCCccEEEEEEEeehhc
Confidence 678999999999987 23469999998 776544443333 22 2234554 4666 4444322111
Q ss_pred -----------------eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC--C-EEEE
Q 004735 324 -----------------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--G-RSYL 383 (732)
Q Consensus 324 -----------------~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~--g-~~~l 383 (732)
..+|+.+|+.+|+.+.|.........+.++|- +...|.|.-+.. . ..+|
T Consensus 150 ~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~-----------dp~li~fCHEGpw~~Vd~Ri 218 (386)
T PF14583_consen 150 KPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT-----------DPTLIMFCHEGPWDLVDQRI 218 (386)
T ss_dssp ----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT-----------EEEEEEEEE-S-TTTSS-SE
T ss_pred cCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC-----------CCCEEEEeccCCcceeceEE
Confidence 24799999999999998866544444444431 566788877632 2 2479
Q ss_pred EEEECCCCceEEeccCC-Cce--EEe-eEeCCEEEEEEeCCCCCc-EEEEEEcCCCcceeee
Q 004735 384 GILDDFGHSLSLLDIPF-TDI--DNI-TLGNDCLFVEGASGVEPS-SVAKVTLDDHKLKAVD 440 (732)
Q Consensus 384 y~~~~~~~~~~~lt~~~-~~v--~~~-~~~~~~~~~~~~~~~~~~-~ly~~dl~~~~~~~lt 440 (732)
|.++.+++..+.+.... ..+ .++ +.++..++|..-.+.+.. -|+.+|+++++.+.+.
T Consensus 219 W~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 219 WTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred EEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 99999999888886542 221 222 566777777665454433 4899999998765554
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-11 Score=127.29 Aligned_cols=217 Identities=14% Similarity=0.132 Sum_probs=134.9
Q ss_pred CCCCEEEEEcCCCCCccC----------Cc-ccHHH---HHHHHCCCEEEEEcCCCCCC--------CChhhHHhhc---
Q 004735 493 EKPPLLVKSHGGPTSEAR----------GI-LNLSI---QYWTSRGWAFVDVNYGGSTG--------YGREFRERLL--- 547 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~----------~~-~~~~~---~~l~~~G~~v~~~d~rG~~g--------~g~~~~~~~~--- 547 (732)
.+-++||++|+..+.... .. |..++ ..+--.-|-|+++|.-|++. .|........
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 345899999996443211 11 11111 22334468999999987642 1211111111
Q ss_pred --cCCCcccHHHHHHHHHHHHhcCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH---H--HHHh---
Q 004735 548 --GRWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---S--MLRA--- 615 (732)
Q Consensus 548 --~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~---~--~~~~--- 615 (732)
.++....++|..+.+..++++..+ +++. ++||||||++++.++. +|++++.+|++++.... . .+..
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~~~~~~~~~~~~~~ 211 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQNDAWTSVNVLQNWA 211 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCCChhHHHHHHHHHH
Confidence 124446788988888888876444 5775 9999999999999988 99999999998754211 0 0000
Q ss_pred ----hcc------------h---------------hhhhhhhhhcC-----------------Chhhhhh----------
Q 004735 616 ----ETH------------K---------------FESRYIDNLVG-----------------SEKDYYE---------- 637 (732)
Q Consensus 616 ----~~~------------~---------------~~~~~~~~~~~-----------------~~~~~~~---------- 637 (732)
... . +...++...++ ..+.|..
T Consensus 212 ~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~e~yl~~~~~~~~~~~ 291 (389)
T PRK06765 212 EAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSFEKEINKATYRRAELV 291 (389)
T ss_pred HHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhHHHHHHHHHHHhhhcc
Confidence 000 0 00001110000 0001100
Q ss_pred --------------c-------CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC-CCccCCC
Q 004735 638 --------------K-------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG-EQHGFRK 695 (732)
Q Consensus 638 --------------~-------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~gH~~~~ 695 (732)
. +....+.++++|+|+++|++|.++|++.++++.+.++..+.+++++++++ .||.. .
T Consensus 292 Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~-~ 370 (389)
T PRK06765 292 DANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMA-G 370 (389)
T ss_pred ChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcch-h
Confidence 0 11223557899999999999999999999999999987666789999986 89964 3
Q ss_pred cccHHHHHHHHHHHHHH
Q 004735 696 AENIKFTLEQQMVFFAR 712 (732)
Q Consensus 696 ~~~~~~~~~~~~~fl~~ 712 (732)
.+..+++.+.+.+||++
T Consensus 371 le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 371 VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred hcCHHHHHHHHHHHHcc
Confidence 35667788888888764
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-11 Score=115.65 Aligned_cols=201 Identities=18% Similarity=0.151 Sum_probs=130.9
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHH
Q 004735 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN 556 (732)
Q Consensus 477 ~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~ 556 (732)
..++.|+. ...+|+|||+||.. .....+..+.+++++.||+|+.+|+....+.. ...+++
T Consensus 6 l~v~~P~~-------~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~-----------~~~~~~ 65 (259)
T PF12740_consen 6 LLVYYPSS-------AGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGGPD-----------DTDEVA 65 (259)
T ss_pred eEEEecCC-------CCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCCCC-----------cchhHH
Confidence 45677876 56799999999984 33334777899999999999999964322211 224477
Q ss_pred HHHHHHHHHHhc--------CCCCCCcEEEEEcChHHHHHHHHHh-C-----CCcceEEEeecCcCCHHHHHhhcchhhh
Q 004735 557 DCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAALA-F-----RDTFKAGASLYGVADLSMLRAETHKFES 622 (732)
Q Consensus 557 D~~~~i~~l~~~--------~~~d~~ri~i~G~S~GG~~a~~~~~-~-----p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 622 (732)
++.+.++|+.+. ..+|-.|++|+|||.||-++..++. + +.+|++++++.|+..+......
T Consensus 66 ~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~------ 139 (259)
T PF12740_consen 66 SAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQT------ 139 (259)
T ss_pred HHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCC------
Confidence 888889998763 1358889999999999999988877 5 5689999999998632221100
Q ss_pred hhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCC--------ccChH--HHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 623 RYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK--------VVPPD--QARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 623 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~--------~v~~~--~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.+..+. +.| ..-+...|+|++-..-.. -|.++ +-.+|+++++. +.-..+..+.||.
T Consensus 140 --------~P~v~~-~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~---p~~~~v~~~~GH~ 205 (259)
T PF12740_consen 140 --------EPPVLT-YTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKP---PSWHFVAKDYGHM 205 (259)
T ss_pred --------CCcccc-Ccc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCC---CEEEEEeCCCCch
Confidence 011110 011 111245899998655553 22222 34667777653 7778888999995
Q ss_pred -CCCc-----------------------ccHHHHHHHHHHHHHHHhCCC
Q 004735 693 -FRKA-----------------------ENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 693 -~~~~-----------------------~~~~~~~~~~~~fl~~~l~~~ 717 (732)
|... +.++-.--.+.+|++.+|++.
T Consensus 206 d~LDd~~~~~~~~~~~~~~Ck~g~~~~~~~r~f~~g~~vAfl~~~l~g~ 254 (259)
T PF12740_consen 206 DFLDDDTPGYVGLCLFRCLCKNGPDDRDPMRRFVGGIMVAFLNAQLQGD 254 (259)
T ss_pred HhhcCCCcchhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 2111 112233345788888888753
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.8e-11 Score=145.68 Aligned_cols=215 Identities=15% Similarity=0.160 Sum_probs=131.1
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|.||++||.+.+. ..|......|. .+|.|+++|+||.+.+................++++.+.+..++++. ..
T Consensus 1370 ~~~~vVllHG~~~s~--~~w~~~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l--~~ 1444 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTG--EDWIPIMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHI--TP 1444 (1655)
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHh--CC
Confidence 357899999985444 35666666664 46999999999776543211000000001123556666555555542 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH--H---HHhh-------------cchhhhhhhh-h----h-
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--M---LRAE-------------THKFESRYID-N----L- 628 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~--~---~~~~-------------~~~~~~~~~~-~----~- 628 (732)
+++.|+||||||.+++.++. +|+++++++++++...+. . .... ...+...+.. . .
T Consensus 1445 ~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 1524 (1655)
T PLN02980 1445 GKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWKSLR 1524 (1655)
T ss_pred CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhhhhc
Confidence 68999999999999999988 999999999887642111 0 0000 0000000000 0 0
Q ss_pred ------------c-C-Chh----hhhhc------CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCC------
Q 004735 629 ------------V-G-SEK----DYYEK------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG------ 678 (732)
Q Consensus 629 ------------~-~-~~~----~~~~~------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g------ 678 (732)
. . +.. .+... +-...+.++++|+|+++|++|..++ ..+.++.+.+.+..
T Consensus 1525 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~ 1603 (1655)
T PLN02980 1525 NHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDK 1603 (1655)
T ss_pred cCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccc
Confidence 0 0 000 00000 0112367889999999999998774 56677777665421
Q ss_pred --CCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 679 --LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 679 --~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
..+++++++++||.. ..++.+.+.+.+.+||.+.-.
T Consensus 1604 ~~~~a~lvvI~~aGH~~-~lE~Pe~f~~~I~~FL~~~~~ 1641 (1655)
T PLN02980 1604 GKEIIEIVEIPNCGHAV-HLENPLPVIRALRKFLTRLHN 1641 (1655)
T ss_pred cccceEEEEECCCCCch-HHHCHHHHHHHHHHHHHhccc
Confidence 126899999999965 346778888899999987554
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.8e-12 Score=127.09 Aligned_cols=219 Identities=19% Similarity=0.256 Sum_probs=128.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCC----CEEEEEcCCCCCCCChhhHHh-
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNYGGSTGYGREFRER- 545 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G----~~v~~~d~rG~~g~g~~~~~~- 545 (732)
-|..+..++|.|++. . +.+++|+|+++||..............+.+...| ..+++++..+.......+...
T Consensus 4 Lg~~~~~~VylP~~y--~--~~~~~PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~ 79 (251)
T PF00756_consen 4 LGRDRRVWVYLPPGY--D--PSKPYPVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPA 79 (251)
T ss_dssp TTEEEEEEEEECTTG--G--TTTTEEEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSB
T ss_pred cCCeEEEEEEECCCC--C--CCCCCEEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccc
Confidence 478889999999884 2 4788999999999500111111112233334443 456666654332111111100
Q ss_pred -----hccCCCcccHHHH--HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH-HHhh
Q 004735 546 -----LLGRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-LRAE 616 (732)
Q Consensus 546 -----~~~~~~~~~~~D~--~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~-~~~~ 616 (732)
.....+...+.+. .+.+.++.++..+++++.+|+|+||||+.|+.++. ||+.|.++++++|..++.. ++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~ 159 (251)
T PF00756_consen 80 GSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGP 159 (251)
T ss_dssp CTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHH
T ss_pred ccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCc
Confidence 0000111112222 35677888888777777999999999999999988 9999999999999876541 1111
Q ss_pred cchhhhhhhhhhcCChhhhhhcCcccc-----CCCCCCCEEEEEeCCCCccC----------hHHHHHHHHHHHhCCCCE
Q 004735 617 THKFESRYIDNLVGSEKDYYEKSPINF-----VDKFSCPIILFQGLEDKVVP----------PDQARKIYKALKENGLPV 681 (732)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~-----~~~i~~P~Lii~G~~D~~v~----------~~~~~~~~~~l~~~g~~~ 681 (732)
.+.+.|...++... ...-..++++.+|+.|.... .....++.+.|+..|.+.
T Consensus 160 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 226 (251)
T PF00756_consen 160 -------------SDDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKGIPH 226 (251)
T ss_dssp -------------STCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEECTT
T ss_pred -------------CCcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcCCCc
Confidence 01112222222221 12234678999999998321 223444555566667788
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 682 ALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 682 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
.++.++ ++|.+ ..+...+...+.||
T Consensus 227 ~~~~~~-G~H~~---~~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 227 TYHVFP-GGHDW---AYWRRRLPDALPWM 251 (251)
T ss_dssp ESEEEH-SESSH---HHHHHHHHHHHHHH
T ss_pred eEEEec-Cccch---hhHHHHHHHHHhhC
Confidence 899998 46854 34566666666664
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=124.21 Aligned_cols=235 Identities=21% Similarity=0.247 Sum_probs=152.6
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc---ccHHH---HHHHHCCCEEEEEcCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSI---QYWTSRGWAFVDVNYGGS 535 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~---~~~~~---~~l~~~G~~v~~~d~rG~ 535 (732)
..+.++.+ ||.++...+|.|++ .++.|+++..+-.|-...... ..... ..++.+||+|+..|.||+
T Consensus 20 ~~v~V~MR-DGvrL~~dIy~Pa~-------~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~ 91 (563)
T COG2936 20 RDVMVPMR-DGVRLAADIYRPAG-------AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGR 91 (563)
T ss_pred eeeeEEec-CCeEEEEEEEccCC-------CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEeccccc
Confidence 45778888 99999999999987 578899999884333322111 11122 268999999999999998
Q ss_pred CCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH
Q 004735 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 614 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~ 614 (732)
+++...+.... . .+.+|-.+.|+|+.+++..+ .+|+++|.|++|+..+++++ +|.-+|+++..++..|...-.
T Consensus 92 ~~SeG~~~~~~----~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~ 165 (563)
T COG2936 92 GGSEGVFDPES----S-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDD 165 (563)
T ss_pred ccCCcccceec----c-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccccccc
Confidence 87655443322 1 36899999999999998876 89999999999999999999 888899999998877632110
Q ss_pred hh---c--chhhhhh-------------------------hh----------hhcCCh-------------hhhhhcCcc
Q 004735 615 AE---T--HKFESRY-------------------------ID----------NLVGSE-------------KDYYEKSPI 641 (732)
Q Consensus 615 ~~---~--~~~~~~~-------------------------~~----------~~~~~~-------------~~~~~~sp~ 641 (732)
.. . ..+...| .. ...+.+ ..|.+.+-.
T Consensus 166 ~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~~~~~~ 245 (563)
T COG2936 166 AFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWRRGDRV 245 (563)
T ss_pred cccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhhccCcc
Confidence 00 0 0000000 00 000000 133434445
Q ss_pred ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc-----ccHHHHHHHHHHHHHHHhC
Q 004735 642 NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA-----ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 642 ~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~-----~~~~~~~~~~~~fl~~~l~ 715 (732)
...+++++|+|++.|-.|.. .....+++..++.. +..+++-|- .|.-..- ......++...+||+.++.
T Consensus 246 ~d~~~i~vP~L~i~gW~D~~--l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~~l~~~~~ 319 (563)
T COG2936 246 ADLSKIKVPALVIGGWSDGY--LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDDFLDAYLD 319 (563)
T ss_pred cccccCCCcEEEEccccccc--ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHhhhhHhhh
Confidence 55788999999999999964 44566777777664 335555543 4542111 2233444555555555554
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=118.04 Aligned_cols=195 Identities=21% Similarity=0.257 Sum_probs=124.2
Q ss_pred HHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh-
Q 004735 516 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA- 593 (732)
Q Consensus 516 ~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~- 593 (732)
.+..+.++||+|+++||.|-+. .|.... -....+-|.+.+++.+... +.....+++++|+|.||..+++++.
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg~---~y~~~~---~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLGT---PYLNGR---SEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCCC---cccCcH---hHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 5677889999999999987554 332211 1112244444555444432 2223479999999999999988874
Q ss_pred ----CCCc---ceEEEeecCcCCHHHHHhhcch-----h--------h------hhhhhhhcC-----------------
Q 004735 594 ----FRDT---FKAGASLYGVADLSMLRAETHK-----F--------E------SRYIDNLVG----------------- 630 (732)
Q Consensus 594 ----~p~~---~~a~v~~~~~~d~~~~~~~~~~-----~--------~------~~~~~~~~~----------------- 630 (732)
-|++ +.++++..+..|+..+...... + . ..++...+.
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~ 171 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLAD 171 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 3554 7888888888877654331110 0 0 000000000
Q ss_pred --------C------------------h---hhhhhcCc-cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCC-C
Q 004735 631 --------S------------------E---KDYYEKSP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG-L 679 (732)
Q Consensus 631 --------~------------------~---~~~~~~sp-~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g-~ 679 (732)
+ + ..+.+.+. +..-..-+.|++|.||..|.++|+....++++.++++| .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 172 IVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGA 251 (290)
T ss_pred HHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Confidence 0 0 00000000 00011225899999999999999999999999999999 7
Q ss_pred CEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCCCCC
Q 004735 680 PVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVA 720 (732)
Q Consensus 680 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 720 (732)
+++++.+++.+|... ........++|+.+.+.+.+..
T Consensus 252 ~V~~~~~~~~~H~~~----~~~~~~~a~~Wl~~rf~G~~~~ 288 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGA----AFASAPDALAWLDDRFAGKPAT 288 (290)
T ss_pred CEEEEecCCCChhhh----hhcCcHHHHHHHHHHHCCCCCC
Confidence 999999999999632 2334567789999999876654
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.9e-11 Score=133.83 Aligned_cols=218 Identities=12% Similarity=0.085 Sum_probs=121.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+.+. ..|.||++||.+.. ...|......| ..||.|+++|+||.+...... ..
T Consensus 11 ~g~~l~~~~~g~~----------~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~---~~--- 71 (582)
T PRK05855 11 DGVRLAVYEWGDP----------DRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRGAGRSSAPK---RT--- 71 (582)
T ss_pred CCEEEEEEEcCCC----------CCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCCCCCCCCCC---cc---
Confidence 7888887665331 24789999998533 34566677777 678999999999865443211 00
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCcC-CHH-HHH-----------
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA-DLS-MLR----------- 614 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~~-d~~-~~~----------- 614 (732)
...+.++..+.+..+++.... ..++.|+|||+||.+++.++.. ++++...+..++.. +.. .+.
T Consensus 72 ~~~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (582)
T PRK05855 72 AAYTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPRR 150 (582)
T ss_pred cccCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchhh
Confidence 112233333333333332111 2349999999999999877764 44444444333221 100 000
Q ss_pred --hhcchhhh----------------------hhhhhhcC-------C--------------hhhhhh----cCccccCC
Q 004735 615 --AETHKFES----------------------RYIDNLVG-------S--------------EKDYYE----KSPINFVD 645 (732)
Q Consensus 615 --~~~~~~~~----------------------~~~~~~~~-------~--------------~~~~~~----~sp~~~~~ 645 (732)
........ ..+...+. . ...+.. ........
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (582)
T PRK05855 151 LARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRER 230 (582)
T ss_pred hhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccC
Confidence 00000000 00000000 0 000000 00011134
Q ss_pred CCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 646 ~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.+++|+|+++|++|.++++.....+.+.+. ..++++++ +||... .+..+.+.+.+.+|+.+.-
T Consensus 231 ~~~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 231 YTDVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred CccCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHHHHHhcc
Confidence 578999999999999999888777665443 34677776 589653 4666788888889987744
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-09 Score=110.03 Aligned_cols=244 Identities=13% Similarity=0.115 Sum_probs=143.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeE
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l 167 (732)
.-.++|.|.| .+.+||+++... .++++++.+|.......|..+. .....+.+..++.. +..+
T Consensus 25 ~~gEgP~w~~~~~~L~w~DI~~~-----~i~r~~~~~g~~~~~~~p~~~~----------~~~~~d~~g~Lv~~--~~g~ 87 (307)
T COG3386 25 TLGEGPVWDPDRGALLWVDILGG-----RIHRLDPETGKKRVFPSPGGFS----------SGALIDAGGRLIAC--EHGV 87 (307)
T ss_pred ccccCccCcCCCCEEEEEeCCCC-----eEEEecCCcCceEEEECCCCcc----------cceeecCCCeEEEE--cccc
Confidence 3458999999 889999999543 5888888755333333333310 11122333334443 2336
Q ss_pred EEEeCCCCCCCc-eecCCCC-CCCCeEeeceeecCCCCEEEEEEe---ccCCCCCCceeEEEEEEcCCCCccccEEcccC
Q 004735 168 YKHSIDSKDSSP-LPITPDY-GEPLVSYADGIFDPRFNRYVTVRE---DRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (732)
Q Consensus 168 ~~~d~~~~~~~~-~~lt~~~-~~~~~~~~~~~~spdG~~l~~~~~---~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~ 242 (732)
++++++. +.. +.++... +.+..+.+|....|||+.++-.+. ....+ ......||+++..++. .+.+...
T Consensus 88 ~~~~~~~--~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~-~~~~G~lyr~~p~g~~---~~l~~~~ 161 (307)
T COG3386 88 RLLDPDT--GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSE-ERPTGSLYRVDPDGGV---VRLLDDD 161 (307)
T ss_pred EEEeccC--CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccc-cCCcceEEEEcCCCCE---EEeecCc
Confidence 7777765 444 4554432 333467899999999996544444 11111 1124589999986665 5555554
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec-CCCceeee---EEecCCCCCccccCcCceeCCCCcEEEEE
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKR---VCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~-~~g~~~~~---~~~~~~~~~~~~~~~~~~wspDg~l~~~~ 318 (732)
-.+.++.+|||||+.|+++.+. ..+|+.++++ .+|..... ....... +.+...+...||.++..+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~-------~~~i~r~~~d~~~g~~~~~~~~~~~~~~~----G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTP-------ANRIHRYDLDPATGPIGGRRGFVDFDEEP----GLPDGMAVDADGNLWVAA 230 (307)
T ss_pred EEecCceEECCCCCEEEEEeCC-------CCeEEEEecCcccCccCCcceEEEccCCC----CCCCceEEeCCCCEEEec
Confidence 6677889999999988877632 3458888886 23433222 2222222 667788888888765443
Q ss_pred eccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
.. +...|.++++++.....+.-.....+.+.+.- . +.+.||+++.+.+
T Consensus 231 ~~--~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG-------~----~~~~L~iTs~~~~ 278 (307)
T COG3386 231 VW--GGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGG-------P----DLNTLYITSARSG 278 (307)
T ss_pred cc--CCceEEEECCCCcEEEEEECCCCCCccceEeC-------C----CcCEEEEEecCCC
Confidence 33 44678999999555555431112223333321 0 4577888887653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-10 Score=113.33 Aligned_cols=200 Identities=16% Similarity=0.171 Sum_probs=133.2
Q ss_pred CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEe-ccCCCCCCCccEEEEEE
Q 004735 201 RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGY 279 (732)
Q Consensus 201 dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~-~~~~~~~~~~~~l~v~d 279 (732)
-|.+|+|++. .+||..++.+|+ +++||++-+.+..|++||||+++||.+ +..++. +..+||+++
T Consensus 49 ~GD~IiFt~~----------DdlWe~slk~g~---~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~--~taDly~v~ 113 (668)
T COG4946 49 YGDRIIFTCC----------DDLWEYSLKDGK---PLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSL--QTADLYVVP 113 (668)
T ss_pred cCcEEEEEec----------hHHHHhhhccCC---eeEEecccceeccccCCCCCcEEEEEEEEecCCC--ccccEEEEe
Confidence 3889999987 679999999999 999999999999999999999999955 333332 567899999
Q ss_pred ecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC---CeeeEEEEeccCCeEEEecccccccCCCceeecc
Q 004735 280 ISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN---GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGI 356 (732)
Q Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~---g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~ 356 (732)
.+ +|+.++++-+ +. ..-.-..|+|||++++.++-.+ .+..||+++.++.+..+|.-+. .-
T Consensus 114 ~e-~Ge~kRiTyf-Gr-----~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGp------at---- 176 (668)
T COG4946 114 SE-DGEAKRITYF-GR-----RFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGP------AT---- 176 (668)
T ss_pred CC-CCcEEEEEEe-cc-----ccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCc------ee----
Confidence 98 8999888877 33 2223456999999776766532 3568999999988777665221 10
Q ss_pred cceeeeeecCCCCEEEEEEE----------ECC-EEEEEEEECCCC-ceEEeccCCCceEEeeEeCCEEEEEEeCCCCCc
Q 004735 357 NSYEIIQSHGEKNLIACSYR----------QNG-RSYLGILDDFGH-SLSLLDIPFTDIDNITLGNDCLFVEGASGVEPS 424 (732)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~s~----------~~g-~~~ly~~~~~~~-~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~ 424 (732)
.+.+ .++.+++..+ +.| +..||.-. ++| .-+.+-.-+..|+....-++++ |+.+.-++..
T Consensus 177 -hiv~-----~dg~ivigRntydLP~WK~YkGGtrGklWis~-d~g~tFeK~vdl~~~vS~PmIV~~Rv-YFlsD~eG~G 248 (668)
T COG4946 177 -HIVI-----KDGIIVIGRNTYDLPHWKGYKGGTRGKLWISS-DGGKTFEKFVDLDGNVSSPMIVGERV-YFLSDHEGVG 248 (668)
T ss_pred -eEEE-----eCCEEEEccCcccCcccccccCCccceEEEEe-cCCcceeeeeecCCCcCCceEEcceE-EEEecccCcc
Confidence 0111 2334443322 122 23466543 333 3343333333443332224455 4555677888
Q ss_pred EEEEEEcCCCcceeee
Q 004735 425 SVAKVTLDDHKLKAVD 440 (732)
Q Consensus 425 ~ly~~dl~~~~~~~lt 440 (732)
.||.+|+++..+++=|
T Consensus 249 nlYSvdldGkDlrrHT 264 (668)
T COG4946 249 NLYSVDLDGKDLRRHT 264 (668)
T ss_pred ceEEeccCCchhhhcC
Confidence 9999999998876544
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.4e-11 Score=118.15 Aligned_cols=210 Identities=18% Similarity=0.275 Sum_probs=86.7
Q ss_pred CCCEEEEEcCCCCCccC-CcccHHHHHHHHCCCEEEEEcCCCC-CCCChhhHHhhccCCCcccHHHHHHHHHHHHhcC--
Q 004735 494 KPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-- 569 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~~G~~v~~~d~rG~-~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 569 (732)
.+.+|||+.|...+... .....+++.|...||.|+.+.++-+ .|+|....+ .|++|+.++|+||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~--------~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLD--------RDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HH--------HHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhh--------hHHHHHHHHHHHHHHhhcc
Confidence 45689999886554443 4455678888778999999998752 456655443 35899999999999873
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh--CC----CcceEEEeecCcCCHHHHHhhcch---hhh--hhhhhhc--C--Ch--
Q 004735 570 KADEKRLCITGGSAGGYTTLAALA--FR----DTFKAGASLYGVADLSMLRAETHK---FES--RYIDNLV--G--SE-- 632 (732)
Q Consensus 570 ~~d~~ri~i~G~S~GG~~a~~~~~--~p----~~~~a~v~~~~~~d~~~~~~~~~~---~~~--~~~~~~~--~--~~-- 632 (732)
....++|+|+|||.|+.-++.++. .+ ..+.++|+.+|++|...+...... +.. .....++ + +.
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 235789999999999999999987 32 679999999999986554322111 100 0000010 0 00
Q ss_pred -hhhhh----cCcc----------------------------ccCCCCCCCEEEEEeCCCCccChH-HHHHHHHHHHhCC
Q 004735 633 -KDYYE----KSPI----------------------------NFVDKFSCPIILFQGLEDKVVPPD-QARKIYKALKENG 678 (732)
Q Consensus 633 -~~~~~----~sp~----------------------------~~~~~i~~P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g 678 (732)
..+.. ..|+ ....++.+|+|++.+++|..||.. ..+++.+.++..-
T Consensus 184 p~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~ 263 (303)
T PF08538_consen 184 PREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAAT 263 (303)
T ss_dssp ----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------------------
T ss_pred eccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccccccccccccccc
Confidence 00000 1111 125567889999999999999875 3455666666542
Q ss_pred C----CEEEEEeCCCCccCCCccc---HHHHHHHHHHHHH
Q 004735 679 L----PVALVEYEGEQHGFRKAEN---IKFTLEQQMVFFA 711 (732)
Q Consensus 679 ~----~~~~~~~~~~gH~~~~~~~---~~~~~~~~~~fl~ 711 (732)
. .....++||+.|.+..++. .+...+++..||+
T Consensus 264 ~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 264 NPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccCC
Confidence 2 2235689999999865443 3356666676653
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-09 Score=108.66 Aligned_cols=216 Identities=16% Similarity=0.179 Sum_probs=130.2
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEE
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~ 169 (732)
.|+|.|.+ .+.+||++... + .|+++++.++ ...+...+ +..+..+...++.+++... +.+.+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~---~--~i~~~~~~~~--~~~~~~~~--------~~~G~~~~~~~g~l~v~~~--~~~~~ 64 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPG---G--RIYRVDPDTG--EVEVIDLP--------GPNGMAFDRPDGRLYVADS--GGIAV 64 (246)
T ss_dssp EEEEEEETTTTEEEEEETTT---T--EEEEEETTTT--EEEEEESS--------SEEEEEEECTTSEEEEEET--TCEEE
T ss_pred CcceEEECCCCEEEEEEcCC---C--EEEEEECCCC--eEEEEecC--------CCceEEEEccCCEEEEEEc--CceEE
Confidence 47899999 99999999743 2 5888877733 22222211 0111112213456776653 34666
Q ss_pred EeCCCCCCCceecCCCC--CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCcee
Q 004735 170 HSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA 247 (732)
Q Consensus 170 ~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~ 247 (732)
+|+++ ++.+.+.... ..+..+.+|.+++|||+ |++...............||+++.+ ++ .+.+..+-...+
T Consensus 65 ~d~~~--g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pN 137 (246)
T PF08450_consen 65 VDPDT--GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPN 137 (246)
T ss_dssp EETTT--TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEE
T ss_pred EecCC--CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce---EEEEecCccccc
Confidence 69887 6666555431 11357889999999999 4444332221111112789999998 66 667766666677
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
+.+|||||+.|++.... ..+|+.++++..+. +...+.+...... .+.+..++...+|+|++. .. +...
T Consensus 138 Gi~~s~dg~~lyv~ds~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va-~~--~~~~ 206 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSF-------NGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVA-DW--GGGR 206 (246)
T ss_dssp EEEEETTSSEEEEEETT-------TTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEE-EE--TTTE
T ss_pred ceEECCcchheeecccc-------cceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEE-Ec--CCCE
Confidence 89999999998776522 44599999974343 5545544322100 024677889999976554 33 3456
Q ss_pred EEEEeccCCeEEEec
Q 004735 327 LHKWIESNNEVLAIY 341 (732)
Q Consensus 327 l~~~d~~~g~~~~l~ 341 (732)
|+++++++.....|.
T Consensus 207 I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 207 IVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEETTSCEEEEEE
T ss_pred EEEECCCccEEEEEc
Confidence 999999854444443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=119.02 Aligned_cols=209 Identities=15% Similarity=0.130 Sum_probs=125.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-----HHHHHHHHCCCEEEEEcCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-----LSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-----~~~~~l~~~G~~v~~~d~rG 534 (732)
+|..+-+... .+..+-|.|... ....+-||++||.. .....++ .++.+|.++||.|+++|+||
T Consensus 163 Tpg~VV~~~~----~~eLi~Y~P~t~------~~~~~PlLiVp~~i--~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrg 230 (532)
T TIGR01838 163 TPGAVVFENE----LFQLIQYEPTTE------TVHKTPLLIVPPWI--NKYYILDLRPQNSLVRWLVEQGHTVFVISWRN 230 (532)
T ss_pred CCCeEEEECC----cEEEEEeCCCCC------cCCCCcEEEECccc--ccceeeecccchHHHHHHHHCCcEEEEEECCC
Confidence 3445555543 344455677541 22345577889863 2233332 58899999999999999997
Q ss_pred CCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHH----HHh-C-CCcceEEEeecCcC
Q 004735 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA----ALA-F-RDTFKAGASLYGVA 608 (732)
Q Consensus 535 ~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~----~~~-~-p~~~~a~v~~~~~~ 608 (732)
.+.....+ .+.....+++.++++.+.+.. +.+++.++|||+||.++.. +++ + +++++.+++++...
T Consensus 231 pg~s~~~~------~~ddY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~ 302 (532)
T TIGR01838 231 PDASQADK------TFDDYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLL 302 (532)
T ss_pred CCcccccC------ChhhhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCc
Confidence 54322111 011123456888899888753 4678999999999998622 233 4 77899998887766
Q ss_pred CHHHHHh---------------hcc---------------------hhhhhhhhhhc-CCh-------------------
Q 004735 609 DLSMLRA---------------ETH---------------------KFESRYIDNLV-GSE------------------- 632 (732)
Q Consensus 609 d~~~~~~---------------~~~---------------------~~~~~~~~~~~-~~~------------------- 632 (732)
|+..... ... .....++..++ ++.
T Consensus 303 Df~~~G~l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~ 382 (532)
T TIGR01838 303 DFSDPGELGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGK 382 (532)
T ss_pred CCCCcchhhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHH
Confidence 5321100 000 00011111111 100
Q ss_pred -------hhhhhcC----------ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 633 -------KDYYEKS----------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 633 -------~~~~~~s----------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
+.|.+.. -...+.+|++|+|+++|++|.++|+..+..+.+.+. ..+..+++++||.
T Consensus 383 ~~~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~----~~~~~vL~~sGHi 455 (532)
T TIGR01838 383 MHNFYLRNLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLG----GPKTFVLGESGHI 455 (532)
T ss_pred HHHHHHHHHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCC----CCEEEEECCCCCc
Confidence 0111111 012367789999999999999999998888876654 2366788999995
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-08 Score=103.00 Aligned_cols=242 Identities=8% Similarity=0.010 Sum_probs=132.2
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
+.+++..+++....++.|+++|+.+ ++... +.... . ...+.|+|||+.++...... ..|+++|+
T Consensus 38 ~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~---~--~~~~~~~~~g~~l~~~~~~~--------~~l~~~d~ 102 (300)
T TIGR03866 38 LSKDGKLLYVCASDSDTIQVIDLAT--GEVIGTLPSGP---D--PELFALHPNGKILYIANEDD--------NLVTVIDI 102 (300)
T ss_pred ECCCCCEEEEEECCCCeEEEEECCC--CcEEEeccCCC---C--ccEEEECCCCCEEEEEcCCC--------CeEEEEEC
Confidence 3334445656666677899999987 54433 33221 1 23467999999865543322 57999999
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
.+++. ...+..+ .......|+|||+.+++...+ ...++.+|.. +++.. ...... .....+.|
T Consensus 103 ~~~~~--~~~~~~~-~~~~~~~~~~dg~~l~~~~~~-------~~~~~~~d~~-~~~~~--~~~~~~-----~~~~~~~~ 164 (300)
T TIGR03866 103 ETRKV--LAEIPVG-VEPEGMAVSPDGKIVVNTSET-------TNMAHFIDTK-TYEIV--DNVLVD-----QRPRFAEF 164 (300)
T ss_pred CCCeE--EeEeeCC-CCcceEEECCCCCEEEEEecC-------CCeEEEEeCC-CCeEE--EEEEcC-----CCccEEEE
Confidence 87651 2222212 223457899999988776522 2236667876 56542 212111 22356789
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeE-EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
+|||+ +++.... .+ .|+.+|+.+++. +.+....... .+.. .....+.|.+ +++.+++....+ ..|.++
T Consensus 165 s~dg~~l~~~~~~-~~--~v~i~d~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~s~---dg~~~~~~~~~~--~~i~v~ 234 (300)
T TIGR03866 165 TADGKELWVSSEI-GG--TVSVIDVATRKVIKKITFEIPGV-HPEA-VQPVGIKLTK---DGKTAFVALGPA--NRVAVV 234 (300)
T ss_pred CCCCCEEEEEcCC-CC--EEEEEEcCcceeeeeeeeccccc-cccc-CCccceEECC---CCCEEEEEcCCC--CeEEEE
Confidence 99999 5555433 33 577788888764 3332110000 0000 0011233433 666666554333 357777
Q ss_pred ECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 387 DDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 387 ~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
|.++++..........+..+ ..+++..++.++.. ...|.++|++++++
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV--SNDVSVIDVAALKV 283 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC--CCeEEEEECCCCcE
Confidence 88877765332222234444 34455555554332 23689999988774
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-09 Score=101.41 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=108.6
Q ss_pred EEEEcCCCCCccCCcccHHHHHHHHCC--CEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 498 LVKSHGGPTSEARGILNLSIQYWTSRG--WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 498 vl~~HGg~~~~~~~~~~~~~~~l~~~G--~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
||++||.-.+..+.....+.+++++.+ ..+.+++++- ..++..+.++.++++. .++.
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~~ 60 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPEN 60 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCCC
Confidence 799999855544444455677787776 4556666531 1344556666666653 2345
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchh-hhhhhhhhcC-ChhhhhhcCccccC-CCCCCCE
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF-ESRYIDNLVG-SEKDYYEKSPINFV-DKFSCPI 651 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~sp~~~~-~~i~~P~ 651 (732)
++|+|.|+||+.|.+++. ++ +++ |+++|...+.......-.. ...+....+. +...+.....+... ..-..++
T Consensus 61 ~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~~~~ 137 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNPERY 137 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCCccE
Confidence 999999999999999987 54 444 8889988765543321100 0001000000 11111111111111 1223689
Q ss_pred EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 652 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
++++++.|.++++..+...++. ....+.+|++|.|. +..+.+..+++|+
T Consensus 138 lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~---~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 138 LVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQ---DFEEYLPQIIAFL 186 (187)
T ss_pred EEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCc---cHHHHHHHHHHhh
Confidence 9999999999999766555542 24446678899885 5678888888886
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.9e-11 Score=105.58 Aligned_cols=206 Identities=13% Similarity=0.098 Sum_probs=123.5
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHH-HHCCCEEEEEcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l-~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~ 570 (732)
...-.|+++.|.- +.....|......+ ...-+.+++.|.+|.+ .+-. ....++. .-.+|...+++.+...
T Consensus 40 ~G~~~iLlipGal-Gs~~tDf~pql~~l~k~l~~TivawDPpGYG---~SrP--P~Rkf~~~ff~~Da~~avdLM~aL-- 111 (277)
T KOG2984|consen 40 HGPNYILLIPGAL-GSYKTDFPPQLLSLFKPLQVTIVAWDPPGYG---TSRP--PERKFEVQFFMKDAEYAVDLMEAL-- 111 (277)
T ss_pred CCCceeEeccccc-ccccccCCHHHHhcCCCCceEEEEECCCCCC---CCCC--CcccchHHHHHHhHHHHHHHHHHh--
Confidence 3345788888853 23344555543333 3335899999998644 3311 1111111 1256777777777654
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC---CHHHHHhh----cchh--------hhhhhhhhc----C
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA---DLSMLRAE----THKF--------ESRYIDNLV----G 630 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~---d~~~~~~~----~~~~--------~~~~~~~~~----~ 630 (732)
+.+++.|+|+|-||.+++.+++ +++.+...++..+.. +...+... ..++ +..|-.+.+ .
T Consensus 112 -k~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa 190 (277)
T KOG2984|consen 112 -KLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWA 190 (277)
T ss_pred -CCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHH
Confidence 5689999999999999999988 999888887776533 22222111 1111 111111000 0
Q ss_pred ----ChhhhhhcC----ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHH
Q 004735 631 ----SEKDYYEKS----PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFT 702 (732)
Q Consensus 631 ----~~~~~~~~s----p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~ 702 (732)
....+.... --..+.+++||+||+||+.|+.|+..++--+...+. -.+++++|.++|++.. ...+++
T Consensus 191 ~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~----~a~~~~~peGkHn~hL-rya~eF 265 (277)
T KOG2984|consen 191 AWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKS----LAKVEIHPEGKHNFHL-RYAKEF 265 (277)
T ss_pred HHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcc----cceEEEccCCCcceee-echHHH
Confidence 000111000 012377899999999999999998777654433332 4589999999999743 455677
Q ss_pred HHHHHHHHHH
Q 004735 703 LEQQMVFFAR 712 (732)
Q Consensus 703 ~~~~~~fl~~ 712 (732)
...+++||++
T Consensus 266 nklv~dFl~~ 275 (277)
T KOG2984|consen 266 NKLVLDFLKS 275 (277)
T ss_pred HHHHHHHHhc
Confidence 7788888865
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=115.04 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=104.3
Q ss_pred CEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEe
Q 004735 525 WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 603 (732)
Q Consensus 525 ~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~ 603 (732)
|.|+++|.||.+..... ....+.....+|+.+.++.+++...+ +++.++||||||.+++.++. +|++++++++
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 68999999987654321 01122334588999999999887544 45999999999999999998 9999999999
Q ss_pred ecCcC---C------HHH-HHh-----hcch--------hhhh------hhhhh-cC------------C----------
Q 004735 604 LYGVA---D------LSM-LRA-----ETHK--------FESR------YIDNL-VG------------S---------- 631 (732)
Q Consensus 604 ~~~~~---d------~~~-~~~-----~~~~--------~~~~------~~~~~-~~------------~---------- 631 (732)
.++.. . +.. ... .... .... ..... .. .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 0 000 000 0000 0000 00000 00 0
Q ss_pred ----hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 632 ----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 632 ----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
...+...++...+.++++|+|+++|++|.++|+.....+.+.+. ..+++++++.||..
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIP----NSQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHST----TEEEEEETTCCSTH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcC----CCEEEECCCCChHH
Confidence 01111222334467899999999999999999988888665554 47999999999964
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=104.38 Aligned_cols=212 Identities=16% Similarity=0.188 Sum_probs=131.2
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HHHHHHHCCCEEEEEc--CCCCCCCCh--hh------
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVN--YGGSTGYGR--EF------ 542 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~~G~~v~~~d--~rG~~g~g~--~~------ 542 (732)
.+..-+|.|+... .+++.|++.++-|.........-.. .-+.....|++|+.|| .||..--|. +|
T Consensus 27 ~Mtf~vylPp~a~----~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 27 SMTFGVYLPPDAP----RGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred ceEEEEecCCCcc----cCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 3555667776532 3667899999999732222211122 3344556799999999 676321111 11
Q ss_pred ---HHhhccCCCc--ccHHHHHHHHHHHHh--cCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH
Q 004735 543 ---RERLLGRWGI--VDVNDCCSCATFLVG--SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 614 (732)
Q Consensus 543 ---~~~~~~~~~~--~~~~D~~~~i~~l~~--~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~ 614 (732)
.++....|.. .+++-+..-+-.++. .-.+|+.+++|.||||||+-|+.... .|.+++.+.+++|+.+....
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c- 181 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC- 181 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC-
Confidence 1111111211 122223333333332 24688999999999999999988777 89999999999999876532
Q ss_pred hhcchhhhhhhhhhcC-ChhhhhhcCccccCCCCC---CCEEEEEeCCCCccChH-HHHHHHHHHHhCC-CCEEEEEeCC
Q 004735 615 AETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS---CPIILFQGLEDKVVPPD-QARKIYKALKENG-LPVALVEYEG 688 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~---~P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g-~~~~~~~~~~ 688 (732)
.|....+..++| ++..|..+++...+++.. .-+||-+|+.|....-+ -.+.+.++.++.. .++.++..+|
T Consensus 182 ----pWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~~~~v~~r~~~g 257 (283)
T KOG3101|consen 182 ----PWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLAEQLLPENLLEACKATWQAPVVFRLQEG 257 (283)
T ss_pred ----cchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhhhhcChHHHHHHhhccccccEEEEeecC
Confidence 233333444444 567888888876666554 45899999999886511 1344555555333 5788888888
Q ss_pred CCccCC
Q 004735 689 EQHGFR 694 (732)
Q Consensus 689 ~gH~~~ 694 (732)
-.|.+.
T Consensus 258 yDHSYy 263 (283)
T KOG3101|consen 258 YDHSYY 263 (283)
T ss_pred CCccee
Confidence 889753
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-07 Score=94.10 Aligned_cols=283 Identities=14% Similarity=0.099 Sum_probs=162.0
Q ss_pred CCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-E
Q 004735 79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-T 156 (732)
Q Consensus 79 ~~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~ 156 (732)
++.-++......+..+.|+| .+.+|-+.. +++.|...-|+.++.+| +...+--. ...+..-.-.+++.+ +
T Consensus 30 l~~~~~v~~~~nptyl~~~~~~~~LY~v~~-~~~~ggvaay~iD~~~G-~Lt~ln~~------~~~g~~p~yvsvd~~g~ 101 (346)
T COG2706 30 LSLLQLVAELGNPTYLAVNPDQRHLYVVNE-PGEEGGVAAYRIDPDDG-RLTFLNRQ------TLPGSPPCYVSVDEDGR 101 (346)
T ss_pred cchhhhccccCCCceEEECCCCCEEEEEEe-cCCcCcEEEEEEcCCCC-eEEEeecc------ccCCCCCeEEEECCCCC
Confidence 55555666666788999999 566666654 54578888888887654 33322111 111111123345544 3
Q ss_pred EEEE-eCCCCeEEEEeCCCCCCCceecC---CCCCC-CCeE-----eeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 157 VIFS-NYKDQRLYKHSIDSKDSSPLPIT---PDYGE-PLVS-----YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 157 i~f~-~~~~~~l~~~d~~~~~~~~~~lt---~~~~~-~~~~-----~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
.+|+ +...+.|-++.++.. |.+..+. ...+. +..+ .-...+.|||++|+.. +-. ...|+++
T Consensus 102 ~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~-DLG-------~Dri~~y 172 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP-DLG-------TDRIFLY 172 (346)
T ss_pred EEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe-ecC-------CceEEEE
Confidence 4444 444567777777542 3332221 11000 0111 1223489999985544 322 2577888
Q ss_pred EcCCCCccccEEcc-----cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC-CCceeeeEEecCCCC--C
Q 004735 227 ALNGQNIQEPKVLV-----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDP--T 298 (732)
Q Consensus 227 d~~~~~~~~~~~lt-----~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~-~g~~~~~~~~~~~~~--~ 298 (732)
+++.|. ..... .+.+ -....|.|+|+. ||+- .+ -.++|-++..+. .|++.++..+..-.. .
T Consensus 173 ~~~dg~---L~~~~~~~v~~G~G-PRHi~FHpn~k~-aY~v-~E-----L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 173 DLDDGK---LTPADPAEVKPGAG-PRHIVFHPNGKY-AYLV-NE-----LNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred EcccCc---cccccccccCCCCC-cceEEEcCCCcE-EEEE-ec-----cCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 887665 32221 2211 234579999985 4554 22 134566666652 377655544322110 0
Q ss_pred ccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC
Q 004735 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (732)
Q Consensus 299 ~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~ 378 (732)
-......+..++||+.+|.++|..+...+|.+|+.+|+++.+.....+-. ..++|.+.+ .++.|+...+++
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~------~PR~F~i~~---~g~~Liaa~q~s 312 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ------FPRDFNINP---SGRFLIAANQKS 312 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc------CCccceeCC---CCCEEEEEccCC
Confidence 00344567789999977788885666678899999998776542111111 123455543 677777777777
Q ss_pred CEEEEEEEECCCCceEEecc
Q 004735 379 GRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 379 g~~~ly~~~~~~~~~~~lt~ 398 (732)
..-.+|.+|.++|+++.+..
T Consensus 313 d~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 313 DNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CcEEEEEEcCCCceEEeccc
Confidence 78899999999999887765
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=130.44 Aligned_cols=217 Identities=14% Similarity=0.130 Sum_probs=129.3
Q ss_pred CCCEEEEEcCCCCCccCCccc---HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcc-cHHHHHHHHHHHHhcC
Q 004735 494 KPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSG 569 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~---~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~ 569 (732)
..|.||++||.+.....+... .+...|.++||.|+++|+ |.++... ....+... .+..+.++++.+....
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~~~-----~~~~~~l~~~i~~l~~~l~~v~~~~ 139 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDKVE-----GGMERNLADHVVALSEAIDTVKDVT 139 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcC-CCCChhH-----cCccCCHHHHHHHHHHHHHHHHHhh
Confidence 347899999985554443322 147889999999999997 3222110 00011110 1223344444444332
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCCHHH-----HH----hh--------------cch-----
Q 004735 570 KADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADLSM-----LR----AE--------------THK----- 619 (732)
Q Consensus 570 ~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d~~~-----~~----~~--------------~~~----- 619 (732)
.+++.++|||+||.+++.+++ + +++++.+++++...|+.. +. .. ...
T Consensus 140 ---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (994)
T PRK07868 140 ---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDIPGWMART 216 (994)
T ss_pred ---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCCCHHHHHH
Confidence 357999999999999988876 5 558998887555433210 00 00 000
Q ss_pred -h--------hhhh---hhhhcC-----C---------hh---------------hhhhcCcc-----------ccCCCC
Q 004735 620 -F--------ESRY---IDNLVG-----S---------EK---------------DYYEKSPI-----------NFVDKF 647 (732)
Q Consensus 620 -~--------~~~~---~~~~~~-----~---------~~---------------~~~~~sp~-----------~~~~~i 647 (732)
+ ...+ +..+.+ + .. .+...+.+ ..+++|
T Consensus 217 ~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i 296 (994)
T PRK07868 217 GFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADI 296 (994)
T ss_pred HHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCEEcchhhC
Confidence 0 0000 000000 0 00 00000011 136788
Q ss_pred CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEE-EEeCCCCcc--CCCcccHHHHHHHHHHHHHHHhCCCCCCCCC
Q 004735 648 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL-VEYEGEQHG--FRKAENIKFTLEQQMVFFARVVGHFDVADEI 723 (732)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~-~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~ 723 (732)
++|+|+++|++|.++|+..++.+.+.+.. .++ .+++++||. +......++.+..+.+||.++-+..+.++.+
T Consensus 297 ~~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~~~~~~~~~ 371 (994)
T PRK07868 297 TCPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEGDGDKPENI 371 (994)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhccCCCCCccc
Confidence 99999999999999999999988776642 355 577899996 3445667889999999999988765555443
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=115.02 Aligned_cols=226 Identities=18% Similarity=0.092 Sum_probs=131.9
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
...+++.....+.++..+++.|...... ....+.|+|++.||. +.....|.+.++++++.||.|..++..|+..-+.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~-~~~~~~PlvvlshG~--Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~ 114 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGT-VALYLLPLVVLSHGS--GSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGA 114 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccc-cccCcCCeEEecCCC--CCCccchhhhHHHHhhCceEEEeccCCCcccccC
Confidence 3456666553577888899999763210 001478999999997 3446788899999999999999999998643222
Q ss_pred hhHHhhccC----CCcccHHHHHHHHHHHHhc---C----CCCCCcEEEEEcChHHHHHHHHHh-CCC---cceEEE---
Q 004735 541 EFRERLLGR----WGIVDVNDCCSCATFLVGS---G----KADEKRLCITGGSAGGYTTLAALA-FRD---TFKAGA--- 602 (732)
Q Consensus 541 ~~~~~~~~~----~~~~~~~D~~~~i~~l~~~---~----~~d~~ri~i~G~S~GG~~a~~~~~-~p~---~~~a~v--- 602 (732)
.-....... .......|+...+++|++. + .+|..+|+++|||+||+.++.++. +.+ ....+.
T Consensus 115 ~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C~~~~ 194 (365)
T COG4188 115 PAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELDAEALLQHCESAS 194 (365)
T ss_pred ChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccccHHHHHHHhhhhh
Confidence 211111100 0112367888888888876 3 678899999999999999999886 432 111111
Q ss_pred ---eecCcCCHHHHHhhcchhhhhhhhhhcCChh--hhhhcCcc-------ccCCCCCCCEEEEEeCCCCccChHH-HHH
Q 004735 603 ---SLYGVADLSMLRAETHKFESRYIDNLVGSEK--DYYEKSPI-------NFVDKFSCPIILFQGLEDKVVPPDQ-ARK 669 (732)
Q Consensus 603 ---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sp~-------~~~~~i~~P~Lii~G~~D~~v~~~~-~~~ 669 (732)
..-+..+...+...........-..+ .++. .-....|. .-+.+++.|++++.|..|...|+.. ...
T Consensus 195 ~~~~~~~~~~~~~l~q~~av~~~~~~~~~-rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~~a~s~D~~aP~~~~~~~ 273 (365)
T COG4188 195 RICLDPPGLNGRLLNQCAAVWLPRQAYDL-RDPRIRAVVAINPALGMIFGTTGLVKVTDPVLLAAGSADGFAPPVTEQIR 273 (365)
T ss_pred hcccCCCCcChhhhccccccccchhhhcc-ccccceeeeeccCCcccccccccceeeecceeeecccccccCCccccccc
Confidence 11111222221111100000000000 0000 00011111 2366788999999999999766642 333
Q ss_pred HHHHHHhCCCCEEEEEeCCCCcc
Q 004735 670 IYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.+..|.. ....+...+++.|-
T Consensus 274 ~f~~l~g--~~k~~~~vp~a~h~ 294 (365)
T COG4188 274 PFGYLPG--ALKYLRLVPGATHF 294 (365)
T ss_pred ccccCCc--chhheeecCCCccc
Confidence 3333332 23468888999994
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-10 Score=117.84 Aligned_cols=190 Identities=19% Similarity=0.200 Sum_probs=103.5
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC------Chh-hHHh------hc------cCC---
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY------GRE-FRER------LL------GRW--- 550 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~------g~~-~~~~------~~------~~~--- 550 (732)
.+.|+|||.||. +.....+...+..||++||+|++++.|-.... ... .... .. ...
T Consensus 98 ~~~PvvIFSHGl--gg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGL--GGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--T--T--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCC--CcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 568999999997 34456677889999999999999999843221 110 0000 00 000
Q ss_pred ---------CcccHHHHHHHHHHHHh--------------------cCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEE
Q 004735 551 ---------GIVDVNDCCSCATFLVG--------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 601 (732)
Q Consensus 551 ---------~~~~~~D~~~~i~~l~~--------------------~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~ 601 (732)
-.....|+..+++.|.+ ++.+|.++|+++|||+||.+++.++....+|+++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d~r~~~~ 255 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQDTRFKAG 255 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-TT--EE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhccCcceE
Confidence 00115566677776653 1456788999999999999999999877889999
Q ss_pred EeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCE
Q 004735 602 ASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 681 (732)
Q Consensus 602 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (732)
|++.|..-.. + .+. ...++.|+|+|+.+.= .-..+...+.+ +...+...
T Consensus 256 I~LD~W~~Pl------------------~-~~~---------~~~i~~P~L~InSe~f--~~~~~~~~~~~-~~~~~~~~ 304 (379)
T PF03403_consen 256 ILLDPWMFPL------------------G-DEI---------YSKIPQPLLFINSESF--QWWENIFRMKK-VISNNKES 304 (379)
T ss_dssp EEES---TTS--------------------GGG---------GGG--S-EEEEEETTT----HHHHHHHHT-T--TTS-E
T ss_pred EEeCCcccCC------------------C-ccc---------ccCCCCCEEEEECccc--CChhhHHHHHH-HhccCCCc
Confidence 9998863210 0 000 1346789999988852 22333333333 33344567
Q ss_pred EEEEeCCCCccC------CCc------------cc----HHHHHHHHHHHHHHHhC
Q 004735 682 ALVEYEGEQHGF------RKA------------EN----IKFTLEQQMVFFARVVG 715 (732)
Q Consensus 682 ~~~~~~~~gH~~------~~~------------~~----~~~~~~~~~~fl~~~l~ 715 (732)
.++.+.|..|.- ..+ .+ .+...+.+++||+++|+
T Consensus 305 ~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 305 RMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp EEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999951 111 01 23445678999999987
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-08 Score=102.31 Aligned_cols=230 Identities=14% Similarity=0.033 Sum_probs=129.1
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++++...++.|+++|+++ ++....... ........|+|||+.++.+.... ..|+++|+.+++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t--~~~~~~~~~----~~~~~~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~--- 64 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT--LEVTRTFPV----GQRPRGITLSKDGKLLYVCASDS--------DTIQVIDLATGE--- 64 (300)
T ss_pred cEEEEecCCCEEEEEECCC--CceEEEEEC----CCCCCceEECCCCCEEEEEECCC--------CeEEEEECCCCc---
Confidence 3566667788999999987 544333222 11224578999999865554322 578999998876
Q ss_pred cEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 236 PKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 236 ~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
... +..+.. .....|+|||+.|+... .. ...|+++|+. +++. +..+... ..+..+.|+|||++
T Consensus 65 ~~~~~~~~~~-~~~~~~~~~g~~l~~~~-~~------~~~l~~~d~~-~~~~--~~~~~~~-----~~~~~~~~~~dg~~ 128 (300)
T TIGR03866 65 VIGTLPSGPD-PELFALHPNGKILYIAN-ED------DNLVTVIDIE-TRKV--LAEIPVG-----VEPEGMAVSPDGKI 128 (300)
T ss_pred EEEeccCCCC-ccEEEECCCCCEEEEEc-CC------CCeEEEEECC-CCeE--EeEeeCC-----CCcceEEECCCCCE
Confidence 433 333322 34568999999775543 21 2359999997 5543 3333322 23457899999994
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL- 393 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~- 393 (732)
++.... . ...++.+|..+++............. +.|.+ +++.++++...++ .|+++++++++.
T Consensus 129 l~~~~~-~-~~~~~~~d~~~~~~~~~~~~~~~~~~---------~~~s~---dg~~l~~~~~~~~--~v~i~d~~~~~~~ 192 (300)
T TIGR03866 129 VVNTSE-T-TNMAHFIDTKTYEIVDNVLVDQRPRF---------AEFTA---DGKELWVSSEIGG--TVSVIDVATRKVI 192 (300)
T ss_pred EEEEec-C-CCeEEEEeCCCCeEEEEEEcCCCccE---------EEECC---CCCEEEEEcCCCC--EEEEEEcCcceee
Confidence 444433 2 22355568777654332211111111 23332 6777777655455 466668777654
Q ss_pred EEeccCC-----Cc--eEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 394 SLLDIPF-----TD--IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 394 ~~lt~~~-----~~--v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+.++... .. ...+ ..++++.+++....+ ..+.++|++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~ 241 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEV 241 (300)
T ss_pred eeeeecccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCCCcE
Confidence 3443211 11 1122 234444544443332 3588889887764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.8e-10 Score=102.98 Aligned_cols=231 Identities=15% Similarity=0.124 Sum_probs=135.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhH
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~ 543 (732)
..++.. ||..+.+..|...+ +.+--|++-|++ +.....++..+++++.+||.|+.+||||.++......
T Consensus 8 ~~l~~~-DG~~l~~~~~pA~~---------~~~g~~~va~a~-Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~ 76 (281)
T COG4757 8 AHLPAP-DGYSLPGQRFPADG---------KASGRLVVAGAT-GVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASL 76 (281)
T ss_pred cccccC-CCccCccccccCCC---------CCCCcEEecccC-CcchhHhHHHHHHhhccCceEEEEecccccCCCcccc
Confidence 567777 99999988884433 223233333432 3333456678888999999999999999876543322
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhh-------
Q 004735 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAE------- 616 (732)
Q Consensus 544 ~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~------- 616 (732)
....-.+..-...|+.++++++.+.. .......+|||+||.+...+..++..-.+++..++.. +......
T Consensus 77 ~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~~~k~~a~~vfG~gag-wsg~m~~~~~l~~~ 153 (281)
T COG4757 77 SGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQHPKYAAFAVFGSGAG-WSGWMGLRERLGAV 153 (281)
T ss_pred ccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccccCcccceeeEeccccc-cccchhhhhcccce
Confidence 21111111122678899999998742 2356899999999997766666773222222222211 1111000
Q ss_pred --------cchhhhhhhhh-hcC---C--------------hhhhhhcCccc-----cCCCCCCCEEEEEeCCCCccChH
Q 004735 617 --------THKFESRYIDN-LVG---S--------------EKDYYEKSPIN-----FVDKFSCPIILFQGLEDKVVPPD 665 (732)
Q Consensus 617 --------~~~~~~~~~~~-~~~---~--------------~~~~~~~sp~~-----~~~~i~~P~Lii~G~~D~~v~~~ 665 (732)
.-.+...++.. ++| + ...|...+|.. ..+.+.+|+..+...+|+.+|+.
T Consensus 154 ~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~A 233 (281)
T COG4757 154 LLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPA 233 (281)
T ss_pred eeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHH
Confidence 00011111111 111 0 01111122211 14567899999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCC----CccCCCcccHHHHHHHHHHHH
Q 004735 666 QARKIYKALKENGLPVALVEYEGE----QHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~~fl 710 (732)
..+.+.+..+++ +++.+.++.. ||.-.-.+..+..+++++.||
T Consensus 234 s~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 234 SRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999998888765 6677777754 785222223367777888876
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-08 Score=112.39 Aligned_cols=171 Identities=9% Similarity=0.012 Sum_probs=110.6
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCC----
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPN---- 267 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~---- 267 (732)
...++++||||++++|+....... .....+||+.+. ++. .++++.+.. ...|.|||||++|+|++....-
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~-~d~~s~Lwv~~~-gg~---~~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGA-PDPASSLWVGPL-GGV---AVQVLEGHS-LTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCC-CCcceEEEEEeC-CCc---ceeeecCCC-CCCceECCCCCceEEEecCcceEEEe
Confidence 347789999999999997533211 123579999997 455 677877665 7889999999999998622110
Q ss_pred CCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEE---EeccCCeEEEe---
Q 004735 268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK---WIESNNEVLAI--- 340 (732)
Q Consensus 268 ~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~---~d~~~g~~~~l--- 340 (732)
......+||+++++ .|+... ..+ ..+..+.|||||+ ++|+.. + +|++ +..++|+ +.|
T Consensus 425 ~~~~~gql~~~~vd-~ge~~~-----~~~----g~Issl~wSpDG~RiA~i~~---g--~v~Va~Vvr~~~G~-~~l~~~ 488 (591)
T PRK13616 425 RDPATGQLARTPVD-ASAVAS-----RVP----GPISELQLSRDGVRAAMIIG---G--KVYLAVVEQTEDGQ-YALTNP 488 (591)
T ss_pred ccCCCceEEEEecc-Cchhhh-----ccC----CCcCeEEECCCCCEEEEEEC---C--EEEEEEEEeCCCCc-eeeccc
Confidence 00134578888887 565522 222 5578999999999 888763 3 4554 4445565 333
Q ss_pred ---cccccc-cCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 341 ---YSLDAE-FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 341 ---~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
.....+ .....|. ++..|+... ..+...+|.+++++...+.+..
T Consensus 489 ~~l~~~l~~~~~~l~W~-------------~~~~L~V~~-~~~~~~v~~v~vDG~~~~~~~~ 536 (591)
T PRK13616 489 REVGPGLGDTAVSLDWR-------------TGDSLVVGR-SDPEHPVWYVNLDGSNSDALPS 536 (591)
T ss_pred EEeecccCCccccceEe-------------cCCEEEEEe-cCCCCceEEEecCCccccccCC
Confidence 322222 2345566 455566554 3556779999999876655443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-06 Score=86.02 Aligned_cols=246 Identities=14% Similarity=0.114 Sum_probs=149.4
Q ss_pred CCeEEEEeCCCCCCCcee--cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-
Q 004735 164 DQRLYKHSIDSKDSSPLP--ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV- 240 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~--lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt- 240 (732)
.+.||++++++..|+... +....+ ...-..|+|+++.|+.+..+.... .-.-|.+|.+.|+ .+.|.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~----nptyl~~~~~~~~LY~v~~~~~~g----gvaay~iD~~~G~---Lt~ln~ 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELG----NPTYLAVNPDQRHLYVVNEPGEEG----GVAAYRIDPDDGR---LTFLNR 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccC----CCceEEECCCCCEEEEEEecCCcC----cEEEEEEcCCCCe---EEEeec
Confidence 456888888742133221 222211 114457999999977766543221 2456777777677 55543
Q ss_pred ---cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeE-EecCCC--C--Ccc-ccCcCceeCCC
Q 004735 241 ---SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV-CVAGFD--P--TIV-ESPTEPKWSSK 311 (732)
Q Consensus 241 ---~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~-~~~~~~--~--~~~-~~~~~~~wspD 311 (732)
.+.. ....+.++||+.|+-.. - ....|-++.+..+|.+.... .+.... + ++. .......+.||
T Consensus 84 ~~~~g~~-p~yvsvd~~g~~vf~An-Y------~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 84 QTLPGSP-PCYVSVDEDGRFVFVAN-Y------HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD 155 (346)
T ss_pred cccCCCC-CeEEEECCCCCEEEEEE-c------cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence 2222 14457899999775443 2 24558888887567664432 221111 0 000 11455678999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
|+++++.+- |.-+++.++++.|+.....+... .| .-|.+.+.|.| +++..|+..+-++.-.+|.++...+
T Consensus 156 ~~~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v---~~--G~GPRHi~FHp---n~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 156 GRYLVVPDL--GTDRIFLYDLDDGKLTPADPAEV---KP--GAGPRHIVFHP---NGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred CCEEEEeec--CCceEEEEEcccCcccccccccc---CC--CCCcceEEEcC---CCcEEEEEeccCCEEEEEEEcCCCc
Confidence 997777776 44455555665666555442211 11 12556778876 8888888888899999999998888
Q ss_pred ceEEeccC---------CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCccee
Q 004735 392 SLSLLDIP---------FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA 438 (732)
Q Consensus 392 ~~~~lt~~---------~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~ 438 (732)
+.++|..- .....++ ...+++++|.+........+|.+|..++++.-
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~ 282 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLEL 282 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEE
Confidence 87766421 2234445 56778888888777776778999988887543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-07 Score=100.07 Aligned_cols=276 Identities=11% Similarity=0.115 Sum_probs=153.1
Q ss_pred cCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC--ceeEEE--CCEEEEEe
Q 004735 87 ASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIF--GDTVIFSN 161 (732)
Q Consensus 87 ~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~--~~~~~~--~~~i~f~~ 161 (732)
....+..+.++| ++.+|.+.....+.+....++.+.++| +.+.+- .+...|. ..++++ +..++..+
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-~L~~~~--------~~~~~g~~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-TLTLLN--------SVPSGGSSPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-EEEEEE--------EEEESSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-eeEEee--------eeccCCCCcEEEEEecCCCEEEEEE
Confidence 345778899999 888888765432457766677665532 222211 1111222 223443 44677777
Q ss_pred CCCCeEEEEeCCCCCCCceec---C------CCC-CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 162 YKDQRLYKHSIDSKDSSPLPI---T------PDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~l---t------~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
...+.+.+++++.. +..... . +.+ ....-+.....++|||+++ |+.+.. ...|++++++..
T Consensus 106 y~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v-~v~dlG-------~D~v~~~~~~~~ 176 (345)
T PF10282_consen 106 YGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV-YVPDLG-------ADRVYVYDIDDD 176 (345)
T ss_dssp TTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE-EEEETT-------TTEEEEEEE-TT
T ss_pred ccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEE-EEEecC-------CCEEEEEEEeCC
Confidence 77888888888752 332222 1 000 0012233456799999985 554432 246777776653
Q ss_pred C--ccccE--EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec-CCCceeeeEEecCCCCCcc--ccCc
Q 004735 232 N--IQEPK--VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIV--ESPT 304 (732)
Q Consensus 232 ~--~~~~~--~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~-~~g~~~~~~~~~~~~~~~~--~~~~ 304 (732)
. .+... .+..+.+ -.+..|+|||++++.+. .. .+.|.+++++ .+|+++.+..+......+. ....
T Consensus 177 ~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~-e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVN-EL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp S-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEE-TT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred CceEEEeeccccccCCC-CcEEEEcCCcCEEEEec-CC------CCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 2 11111 1222222 34568999999775554 22 4558887776 3565544443332210000 1355
Q ss_pred CceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 305 ~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
.+..+|||+.+|++++..+.-.+|.+|.++|+.+.+......-.. .+.+.+.+ +++.|+++...++.-.+|
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~------Pr~~~~s~---~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF------PRHFAFSP---DGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS------EEEEEE-T---TSSEEEEEETTTTEEEEE
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC------ccEEEEeC---CCCEEEEEecCCCeEEEE
Confidence 678999999767777745566677776677877766422111011 23455554 778788777778888999
Q ss_pred EEECCCCceEEec
Q 004735 385 ILDDFGHSLSLLD 397 (732)
Q Consensus 385 ~~~~~~~~~~~lt 397 (732)
.+|.++|.++.+.
T Consensus 320 ~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 320 DIDPDTGKLTPVG 332 (345)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEeCCCCcEEEec
Confidence 9999999887664
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-07 Score=99.07 Aligned_cols=258 Identities=11% Similarity=0.067 Sum_probs=132.4
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
+++++.++.....++.|..++++.. +..+.+..... ........++|||++++...... ..|.+++++.
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~~--~~~p~~i~~~~~g~~l~v~~~~~--------~~v~v~~~~~ 111 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAESPL--PGSPTHISTDHQGRFLFSASYNA--------NCVSVSPLDK 111 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCC-CceEEeeeecC--CCCceEEEECCCCCEEEEEEcCC--------CeEEEEEECC
Confidence 3334456666556677877777531 43332221100 01124567999999865554321 5777777763
Q ss_pred -CCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee----EEecCCCCCccccCcC
Q 004735 231 -QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR----VCVAGFDPTIVESPTE 305 (732)
Q Consensus 231 -~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~----~~~~~~~~~~~~~~~~ 305 (732)
+..........+........++|||++|+... . ....|+++|++..|.+... ..... . ..+..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~-~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g----~~p~~ 179 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC-L------KEDRIRLFTLSDDGHLVAQEPAEVTTVE-G----AGPRH 179 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCCEEEEee-C------CCCEEEEEEECCCCcccccCCCceecCC-C----CCCce
Confidence 32100111111211223356899999886544 2 2346999999744544211 01111 1 34567
Q ss_pred ceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecc---cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEE
Q 004735 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (732)
Q Consensus 306 ~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ 382 (732)
+.|+|||+.+|+.+...+.-.+|.++..+++.+.+.. .......+.|. ..+.+.+ +++.+|.+.+.++.-.
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~i~~~p---dg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA---ADIHITP---DGRHLYACDRTASLIS 253 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc---eeEEECC---CCCEEEEecCCCCeEE
Confidence 8999999965566553455555555544555443321 11111223332 1244543 6666666544456666
Q ss_pred EEEEECCCCceEEecc--CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 383 LGILDDFGHSLSLLDI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 383 ly~~~~~~~~~~~lt~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
+|.++.+++..+.+.. .......+ ..++++.+|.+...++.-.+|.+|.+++.++
T Consensus 254 v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred EEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 7777666554432221 11112233 3445666666665555556777776666653
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-08 Score=87.53 Aligned_cols=169 Identities=17% Similarity=0.200 Sum_probs=110.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
+..+-+||+.||.+....+..+...+..|+.+|+.|..+++.-....... .......-+.. -.....++..|... .
T Consensus 11 g~~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg-~rkPp~~~~t~-~~~~~~~~aql~~~--l 86 (213)
T COG3571 11 GPAPVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTG-RRKPPPGSGTL-NPEYIVAIAQLRAG--L 86 (213)
T ss_pred CCCCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhcccc-CCCCcCccccC-CHHHHHHHHHHHhc--c
Confidence 34456788999987777777788888999999999999997421110000 00011111111 12334455555554 3
Q ss_pred CCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeec-CcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCC
Q 004735 572 DEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLY-GVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 648 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~ 648 (732)
+..++++-|+||||-++.+++. +.+ +.+.+++. |+... +.++.. -..++..++
T Consensus 87 ~~gpLi~GGkSmGGR~aSmvade~~A~-i~~L~clgYPfhpp-------------------GKPe~~----Rt~HL~gl~ 142 (213)
T COG3571 87 AEGPLIIGGKSMGGRVASMVADELQAP-IDGLVCLGYPFHPP-------------------GKPEQL----RTEHLTGLK 142 (213)
T ss_pred cCCceeeccccccchHHHHHHHhhcCC-cceEEEecCccCCC-------------------CCcccc----hhhhccCCC
Confidence 5568999999999999998886 554 77777653 33211 112211 235678899
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
+|+||.||+.|.+-..++...+ . ...+++++++.++.|.+
T Consensus 143 tPtli~qGtrD~fGtr~~Va~y--~---ls~~iev~wl~~adHDL 182 (213)
T COG3571 143 TPTLITQGTRDEFGTRDEVAGY--A---LSDPIEVVWLEDADHDL 182 (213)
T ss_pred CCeEEeecccccccCHHHHHhh--h---cCCceEEEEeccCcccc
Confidence 9999999999998777665222 1 23478999999999975
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.7e-09 Score=97.01 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=93.0
Q ss_pred EEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEE
Q 004735 498 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 577 (732)
Q Consensus 498 vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 577 (732)
|+++||..++....-+.++.+.+... +.|-.++.. .-++.+.+..|.+.-....+.+.
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~~---------------------~P~~~~W~~~l~~~i~~~~~~~i 58 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDWD---------------------NPDLDEWVQALDQAIDAIDEPTI 58 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC--T---------------------S--HHHHHHHHHHCCHC-TTTEE
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEeccccC---------------------CCCHHHHHHHHHHHHhhcCCCeE
Confidence 68899986666555555666667666 667766651 11234444444443211235699
Q ss_pred EEEcChHHHHHHHHH-h-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEE
Q 004735 578 ITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQ 655 (732)
Q Consensus 578 i~G~S~GG~~a~~~~-~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~ 655 (732)
++|||+|+.+++.++ . ...+++++++++|+..-.... . ........+. ....+..|.+++.
T Consensus 59 lVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~--~--------------~~~~~~f~~~-p~~~l~~~~~via 121 (171)
T PF06821_consen 59 LVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEP--F--------------PPELDGFTPL-PRDPLPFPSIVIA 121 (171)
T ss_dssp EEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHC--C--------------TCGGCCCTTS-HCCHHHCCEEEEE
T ss_pred EEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccc--h--------------hhhccccccC-cccccCCCeEEEE
Confidence 999999999999999 5 788999999999985420100 0 0000011111 0112346679999
Q ss_pred eCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 656 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 656 G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
+++|+.+|++.+.++.+.+.. +++.++++||-
T Consensus 122 S~nDp~vp~~~a~~~A~~l~a-----~~~~~~~~GHf 153 (171)
T PF06821_consen 122 SDNDPYVPFERAQRLAQRLGA-----ELIILGGGGHF 153 (171)
T ss_dssp ETTBSSS-HHHHHHHHHHHT------EEEEETS-TTS
T ss_pred cCCCCccCHHHHHHHHHHcCC-----CeEECCCCCCc
Confidence 999999999999999999954 89999999994
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.1e-09 Score=98.64 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=86.8
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCC
Q 004735 456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGG 534 (732)
Q Consensus 456 ~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG 534 (732)
.++...+.+.+... ++ ++..++..|.. ...|++++.||++.+ ...|...++.+.++ -+.|+++|.||
T Consensus 45 ~yFdekedv~i~~~-~~-t~n~Y~t~~~~--------t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRg 112 (343)
T KOG2564|consen 45 DYFDEKEDVSIDGS-DL-TFNVYLTLPSA--------TEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRG 112 (343)
T ss_pred HhhccccccccCCC-cc-eEEEEEecCCC--------CCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccc
Confidence 34455566777664 33 67777776642 346999999998443 34555666666654 67889999998
Q ss_pred CCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeec
Q 004735 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLY 605 (732)
Q Consensus 535 ~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~ 605 (732)
.+..--+..+.+. ......|+.+.++++... .+.+|+|+||||||.++...+. -|. +.+++.+.
T Consensus 113 HGeTk~~~e~dlS---~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 113 HGETKVENEDDLS---LETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred cCccccCChhhcC---HHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 7653332222221 113478888888888654 3568999999999999987765 465 55555543
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-09 Score=107.34 Aligned_cols=221 Identities=19% Similarity=0.299 Sum_probs=142.0
Q ss_pred CCCCCEEEEEcCCCCCc-cCCcccHHHHHHHHCCCEEEEEcC--C------------CC-CCCChhhHHhhccCCCcccH
Q 004735 492 EEKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNY--G------------GS-TGYGREFRERLLGRWGIVDV 555 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~-~~~~~~~~~~~l~~~G~~v~~~d~--r------------G~-~g~g~~~~~~~~~~~~~~~~ 555 (732)
+++.|+++++||-.... ....+..........|++++.+|- | |. .++-..+....... +....
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~-~~~q~ 129 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWAS-GPYQW 129 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCcccc-Cccch
Confidence 46689999999863222 112233345556677888888742 1 11 11111111111000 11122
Q ss_pred HHHH-HHHH-HHHhcCCCCCC--cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc----chhhhhhhh
Q 004735 556 NDCC-SCAT-FLVGSGKADEK--RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET----HKFESRYID 626 (732)
Q Consensus 556 ~D~~-~~i~-~l~~~~~~d~~--ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~----~~~~~~~~~ 626 (732)
+++. .-+- .+.+....+.+ +.+|+||||||+-|+.++. ||++|+.+.+++|+.+........ ..+......
T Consensus 130 ~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~ 209 (316)
T COG0627 130 ETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFN 209 (316)
T ss_pred hHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHH
Confidence 2222 2222 34444445553 8999999999999999998 899999999999998876332222 112223344
Q ss_pred hhcCCh--hhhhhcCccccCCC--------------CCCCEEEEEeCCCCccC--hHHHHHHHHHHHhCCCCEEEEEeCC
Q 004735 627 NLVGSE--KDYYEKSPINFVDK--------------FSCPIILFQGLEDKVVP--PDQARKIYKALKENGLPVALVEYEG 688 (732)
Q Consensus 627 ~~~~~~--~~~~~~sp~~~~~~--------------i~~P~Lii~G~~D~~v~--~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (732)
.++|.. ..+.+++|...+++ ...++++-+|..|.+.. ......+.+++++.|.+..+..+++
T Consensus 210 ~~~G~~~~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~ 289 (316)
T COG0627 210 AMLGPDSDPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPG 289 (316)
T ss_pred HhcCCCccccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCC
Confidence 455532 36777777766654 44678888999998754 3347889999999999999999988
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 689 EQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 689 ~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
..|.+ ..+...++..+.|+.+.|+.
T Consensus 290 G~Hsw---~~w~~~l~~~~~~~a~~l~~ 314 (316)
T COG0627 290 GDHSW---YFWASQLADHLPWLAGALGL 314 (316)
T ss_pred CCcCH---HHHHHHHHHHHHHHHHHhcc
Confidence 99987 36778889999999988863
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-08 Score=93.07 Aligned_cols=210 Identities=14% Similarity=0.228 Sum_probs=120.1
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 545 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~ 545 (732)
+.-. +|..|+.|--.|++.. ..+.|.||+..|+ +..-..+..++.+|+.+||.|+.+|.--.-| .+...
T Consensus 7 i~~~-~~~~I~vwet~P~~~~-----~~~~~tiliA~Gf--~rrmdh~agLA~YL~~NGFhViRyDsl~HvG--lSsG~- 75 (294)
T PF02273_consen 7 IRLE-DGRQIRVWETRPKNNE-----PKRNNTILIAPGF--ARRMDHFAGLAEYLSANGFHVIRYDSLNHVG--LSSGD- 75 (294)
T ss_dssp EEET-TTEEEEEEEE---TTS--------S-EEEEE-TT---GGGGGGHHHHHHHHTTT--EEEE---B-----------
T ss_pred eEcC-CCCEEEEeccCCCCCC-----cccCCeEEEecch--hHHHHHHHHHHHHHhhCCeEEEecccccccc--CCCCC-
Confidence 3444 8999999999998632 4566899999997 4444567789999999999999999642211 11100
Q ss_pred hccCCCc-ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchhhhhh
Q 004735 546 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRY 624 (732)
Q Consensus 546 ~~~~~~~-~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~ 624 (732)
-.++.. ...+|+..+++||.+.+ ..+++++..|.-|=+|+..+...+ +...|...|+.+++........+ .|
T Consensus 76 -I~eftms~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~i~-lsfLitaVGVVnlr~TLe~al~~--Dy 148 (294)
T PF02273_consen 76 -INEFTMSIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAADIN-LSFLITAVGVVNLRDTLEKALGY--DY 148 (294)
T ss_dssp ------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS---SEEEEES--S-HHHHHHHHHSS---G
T ss_pred -hhhcchHHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhccC-cceEEEEeeeeeHHHHHHHHhcc--ch
Confidence 011110 12678999999999775 467999999999999999999664 78888888999988755432221 12
Q ss_pred hhhhc----C---------Chhhhh------hc----CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCE
Q 004735 625 IDNLV----G---------SEKDYY------EK----SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 681 (732)
Q Consensus 625 ~~~~~----~---------~~~~~~------~~----sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (732)
+...+ + +.+.|. .+ +-...++.+.+|++.+++.+|..|...+..++.+.+... .+
T Consensus 149 l~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~--~~ 226 (294)
T PF02273_consen 149 LQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINSN--KC 226 (294)
T ss_dssp GGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT----E
T ss_pred hhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCCC--ce
Confidence 22111 1 111111 11 223457788999999999999999998888887776543 57
Q ss_pred EEEEeCCCCccCCC
Q 004735 682 ALVEYEGEQHGFRK 695 (732)
Q Consensus 682 ~~~~~~~~gH~~~~ 695 (732)
+++.++|..|.+..
T Consensus 227 klysl~Gs~HdL~e 240 (294)
T PF02273_consen 227 KLYSLPGSSHDLGE 240 (294)
T ss_dssp EEEEETT-SS-TTS
T ss_pred eEEEecCccchhhh
Confidence 89999999998753
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=104.85 Aligned_cols=243 Identities=18% Similarity=0.176 Sum_probs=160.2
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc----cHHHHHHHHCCCEEEEEcCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~----~~~~~~l~~~G~~v~~~d~rG 534 (732)
-+.|...+.+. ||..+...- .|.. ..++|+|++.||.-.+...+-. ...+-.|+++||.|..-|.||
T Consensus 46 y~~E~h~V~T~-DgYiL~lhR-Ip~~-------~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG 116 (403)
T KOG2624|consen 46 YPVEEHEVTTE-DGYILTLHR-IPRG-------KKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG 116 (403)
T ss_pred CceEEEEEEcc-CCeEEEEee-ecCC-------CCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC
Confidence 35788889997 998555443 3543 3678999999996444444322 235667899999999999999
Q ss_pred CCCCChhhHHhhcc--------CCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC---cceEEE
Q 004735 535 STGYGREFRERLLG--------RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD---TFKAGA 602 (732)
Q Consensus 535 ~~g~g~~~~~~~~~--------~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~---~~~a~v 602 (732)
..|++........ .|.+....|+.+.|+++++.. ..+++..+|||.|+.....++. .|+ +++..+
T Consensus 117 -n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~ 193 (403)
T KOG2624|consen 117 -NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFI 193 (403)
T ss_pred -cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhheee
Confidence 4555543322211 123334789999999999874 4689999999999998887776 544 789999
Q ss_pred eecCcCCHHH---HH------------------hh------------------cch-hh----hhhhhhhcC--------
Q 004735 603 SLYGVADLSM---LR------------------AE------------------THK-FE----SRYIDNLVG-------- 630 (732)
Q Consensus 603 ~~~~~~d~~~---~~------------------~~------------------~~~-~~----~~~~~~~~~-------- 630 (732)
+++|+..... .. .. ... .. ..++....|
T Consensus 194 aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~ 273 (403)
T KOG2624|consen 194 ALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNT 273 (403)
T ss_pred eecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhh
Confidence 9998763220 00 00 000 00 000000000
Q ss_pred ----------------------------------------Chhhhh-hcCccccCCCCCCCEEEEEeCCCCccChHHHHH
Q 004735 631 ----------------------------------------SEKDYY-EKSPINFVDKFSCPIILFQGLEDKVVPPDQARK 669 (732)
Q Consensus 631 ----------------------------------------~~~~~~-~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~ 669 (732)
+...|. ...|...+.++.+|+.+..|.+|.++.++....
T Consensus 274 ~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~ 353 (403)
T KOG2624|consen 274 TLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLI 353 (403)
T ss_pred cccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHH
Confidence 111121 224566688899999999999999999999998
Q ss_pred HHHHHHhCCCCEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHHh
Q 004735 670 IYKALKENGLPVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+...+..... ...+.+++-.|- +......+++++.+++.++++.
T Consensus 354 ~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 354 LLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred HHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 8887776543 233336777784 2344667888999999888765
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=92.11 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=90.2
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCC
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 647 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i 647 (732)
..++.+||++.|+|+||.+++.++. ++..+.+.+..+++....... +...-+- ..
T Consensus 88 ~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~--------------------~~~~~~~--~~-- 143 (206)
T KOG2112|consen 88 NGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIG--------------------LPGWLPG--VN-- 143 (206)
T ss_pred cCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhh--------------------ccCCccc--cC--
Confidence 4578899999999999999999988 877777777777765421110 0000000 00
Q ss_pred CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 648 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
..|+++.||+.|++||..-.++..+.|+..+..++++.|++.+|... .+.++.+..|+.+
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999754 4667888888876
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-09 Score=119.50 Aligned_cols=130 Identities=25% Similarity=0.302 Sum_probs=92.4
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHC-C-CEEEEEcCC-CCCCCChhhHHhhcc
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-G-WAFVDVNYG-GSTGYGREFRERLLG 548 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G-~~v~~~d~r-G~~g~g~~~~~~~~~ 548 (732)
...++..+|.|.... +.++.|+||++|||++........ ....++.. + ++|+.+||| |..|+.........+
T Consensus 76 Edcl~l~i~~p~~~~----~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~ 150 (493)
T cd00312 76 EDCLYLNVYTPKNTK----PGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPG 150 (493)
T ss_pred CcCCeEEEEeCCCCC----CCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCc
Confidence 335777888887521 246789999999997654444332 23344444 3 999999999 766664432222233
Q ss_pred CCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCcCC
Q 004735 549 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVAD 609 (732)
Q Consensus 549 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~~d 609 (732)
++| ..|+.++++|+.++ ...|+++|.|+|+|+||++++.++.. +.+|+++|+.+|...
T Consensus 151 n~g---~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 151 NYG---LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred chh---HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 333 78999999999775 35799999999999999999888874 457999999987654
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-07 Score=94.48 Aligned_cols=262 Identities=14% Similarity=0.083 Sum_probs=140.2
Q ss_pred CCEEEEEeCC---CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 154 GDTVIFSNYK---DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 154 ~~~i~f~~~~---~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
++.|+..... .+.|..+.++...+..+.+..... .+......+++|||++|+...- .. ..+.+++++.
T Consensus 48 ~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany-~~-------g~v~v~~l~~ 118 (345)
T PF10282_consen 48 GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANY-GG-------GSVSVFPLDD 118 (345)
T ss_dssp SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEET-TT-------TEEEEEEECT
T ss_pred CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEc-cC-------CeEEEEEccC
Confidence 3456666553 456766666531033333322100 0111234568999998555432 21 4666666664
Q ss_pred -CCccccEEccc-----------CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC-CceeeeEEecCCCC
Q 004735 231 -QNIQEPKVLVS-----------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDP 297 (732)
Q Consensus 231 -~~~~~~~~lt~-----------~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~-g~~~~~~~~~~~~~ 297 (732)
|.......+.. .....-...++|||++|+... . ....|++++++.. +++.....+.-..
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-l------G~D~v~~~~~~~~~~~l~~~~~~~~~~- 190 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-L------GADRVYVYDIDDDTGKLTPVDSIKVPP- 190 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-T------TTTEEEEEEE-TTS-TEEEEEEEECST-
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-c------CCCEEEEEEEeCCCceEEEeecccccc-
Confidence 44111111110 011223457899999886544 2 2446899988732 2354433222111
Q ss_pred CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecc---cccccCCCceeecccceeeeeecCCCCEEEEE
Q 004735 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 374 (732)
. ..+..+.|+|||+.+|+.+...+.-.++.++..+++.+.+.. ......... ....+.+.+ +++.||++
T Consensus 191 G--~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~isp---dg~~lyvs 262 (345)
T PF10282_consen 191 G--SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN---APAEIAISP---DGRFLYVS 262 (345)
T ss_dssp T--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS---SEEEEEE-T---TSSEEEEE
T ss_pred C--CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC---CceeEEEec---CCCEEEEE
Confidence 1 456678999999954455443566666666655776554431 111111111 123445554 77777766
Q ss_pred EEECCEEEEEEEECCCCceEEecc---CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 375 YRQNGRSYLGILDDFGHSLSLLDI---PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 375 s~~~g~~~ly~~~~~~~~~~~lt~---~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
....+.-.+|.++.++|+++.+.. .......+ .++++++++++...+..-.+|.+|.++|.++.+.
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 655566778888777788776543 22224455 4566777788877777777899998999876554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=98.79 Aligned_cols=192 Identities=16% Similarity=0.238 Sum_probs=122.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh------hccCC--------C------
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER------LLGRW--------G------ 551 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~------~~~~~--------~------ 551 (732)
+.++|+|||.||.++ ...-+....-.||++||+|.++..|-....-.-+... +...| +
T Consensus 115 ~~k~PvvvFSHGLgg--sRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~i 192 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGG--SRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHI 192 (399)
T ss_pred CCCccEEEEeccccc--chhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEe
Confidence 678999999999733 3455666778899999999999988532210000000 00000 0
Q ss_pred -----cccHHHHHHHHHHHHh---------------------cCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeec
Q 004735 552 -----IVDVNDCCSCATFLVG---------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 605 (732)
Q Consensus 552 -----~~~~~D~~~~i~~l~~---------------------~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~ 605 (732)
...+.++..|+.-|.+ ++.+|..+++++|||+||.+++........|+++|+..
T Consensus 193 rNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~FrcaI~lD 272 (399)
T KOG3847|consen 193 RNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTDFRCAIALD 272 (399)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccceeeeeeee
Confidence 0125566666666554 45678899999999999999998888666799999987
Q ss_pred CcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 606 GVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 606 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
+.--+.. -.+.++++-|+|+|.-++ .. .-+.....+++...+..-.+.+
T Consensus 273 ~WM~Pl~----------------------------~~~~~~arqP~~finv~~-fQ--~~en~~vmKki~~~n~g~~~it 321 (399)
T KOG3847|consen 273 AWMFPLD----------------------------QLQYSQARQPTLFINVED-FQ--WNENLLVMKKIESQNEGNHVIT 321 (399)
T ss_pred eeecccc----------------------------hhhhhhccCCeEEEEccc-cc--chhHHHHHHhhhCCCccceEEE
Confidence 6421110 012345678999998443 21 2344455555555554447778
Q ss_pred eCCCCcc-CC--------------------C-cccHHHHHHHHHHHHHHHhCC
Q 004735 686 YEGEQHG-FR--------------------K-AENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 686 ~~~~gH~-~~--------------------~-~~~~~~~~~~~~~fl~~~l~~ 716 (732)
+.|.=|. +. . -+..+...+..++||++++..
T Consensus 322 ~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d~ 374 (399)
T KOG3847|consen 322 LDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLDL 374 (399)
T ss_pred EccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhhh
Confidence 8888784 11 1 123445567789999998863
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=96.36 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=114.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCccc
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD 554 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~ 554 (732)
.+..++.|.. ...+|+|+++||. ......|....+++++.||+|++|+.-.... --+..+
T Consensus 33 kpLlI~tP~~-------~G~yPVilF~HG~--~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~E 92 (307)
T PF07224_consen 33 KPLLIVTPSE-------AGTYPVILFLHGF--NLYNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDE 92 (307)
T ss_pred CCeEEecCCc-------CCCccEEEEeech--hhhhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHH
Confidence 4556677765 6789999999996 4445566778899999999999999642211 113345
Q ss_pred HHHHHHHHHHHHhc--------CCCCCCcEEEEEcChHHHHHHHHHh-C--CCcceEEEeecCcCCHHHHHhhcchhhhh
Q 004735 555 VNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAALA-F--RDTFKAGASLYGVADLSMLRAETHKFESR 623 (732)
Q Consensus 555 ~~D~~~~i~~l~~~--------~~~d~~ri~i~G~S~GG~~a~~~~~-~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 623 (732)
+++..+.++||.+. -..+..+++++|||.||..|..++. + .-.|++.|.+.|+.-........
T Consensus 93 i~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~~t~------ 166 (307)
T PF07224_consen 93 IKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGKQTP------ 166 (307)
T ss_pred HHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCCCCC------
Confidence 78888999999763 1246689999999999999998887 4 23588888888875432211000
Q ss_pred hhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCC-------CccChH--HHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 624 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLED-------KVVPPD--QARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 624 ~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D-------~~v~~~--~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
+.. ..+.|.. -.+..|+++|-..-- +-|.+. +-+++++..+. ++...+..+-||.
T Consensus 167 --------P~i-Lty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~---p~~hfV~~dYGHm 230 (307)
T PF07224_consen 167 --------PPI-LTYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKP---PCAHFVAKDYGHM 230 (307)
T ss_pred --------CCe-eecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhcc---cceeeeecccccc
Confidence 000 0011111 134589988843322 112222 34667776654 6666677777884
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-07 Score=89.85 Aligned_cols=205 Identities=18% Similarity=0.167 Sum_probs=112.0
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCE-EEEEcCCC-----
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA-FVDVNYGG----- 534 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~-v~~~d~rG----- 534 (732)
.+...+.+...|...+.++..|++.. +..++|+|.++-|. .........+...++..-.. .+.+.|+.
T Consensus 9 ~~~~~l~s~~~~~~yri~i~~P~~~~----~~~~YpVlY~lDGn--~vf~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~ 82 (264)
T COG2819 9 FRERDLKSANTGRKYRIFIATPKNYP----KPGGYPVLYMLDGN--AVFNALTEIMLRILADLPPPVIVGIGYETILVFD 82 (264)
T ss_pred ceeEeeeecCCCcEEEEEecCCCCCC----CCCCCcEEEEecch--hhhchHHHHhhhhhhcCCCceEEEeccccccccc
Confidence 34445555535778899999998732 33448877777664 22111111122223333222 22333332
Q ss_pred ----CCCCChh----hHHhh----ccCCCccc--HHHHHHHHH-HHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcc
Q 004735 535 ----STGYGRE----FRERL----LGRWGIVD--VNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTF 598 (732)
Q Consensus 535 ----~~g~g~~----~~~~~----~~~~~~~~--~~D~~~~i~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~ 598 (732)
...|... ..... ...-|..+ .+.+.+-+. ++.+.+.++.++.+|+|||+||.+++.++. +|+.|
T Consensus 83 ~~~r~~DyTp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F 162 (264)
T COG2819 83 PNRRAYDYTPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCF 162 (264)
T ss_pred cccccccCCCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchh
Confidence 1111000 00000 11112111 233333343 444558899999999999999999999988 99999
Q ss_pred eEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEE--eCCCCc------cChHHHHHH
Q 004735 599 KAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQ--GLEDKV------VPPDQARKI 670 (732)
Q Consensus 599 ~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~--G~~D~~------v~~~~~~~~ 670 (732)
...++.+|..-|... .......-.... + ..++.|+- |+.|.- ....++.+.
T Consensus 163 ~~y~~~SPSlWw~n~-------------------~~l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~ 221 (264)
T COG2819 163 GRYGLISPSLWWHNE-------------------AILREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAEL 221 (264)
T ss_pred ceeeeecchhhhCCH-------------------HHhccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHH
Confidence 999999997543321 111111111111 2 34444444 433331 234456666
Q ss_pred HHHHHh-CCCCEEEEEeCCCCcc
Q 004735 671 YKALKE-NGLPVALVEYEGEQHG 692 (732)
Q Consensus 671 ~~~l~~-~g~~~~~~~~~~~gH~ 692 (732)
.+.+++ .|..+.+..+++++|+
T Consensus 222 ~~~~~~~~g~~~~f~~~~~~~H~ 244 (264)
T COG2819 222 SSLLEKRTGARLVFQEEPLEHHG 244 (264)
T ss_pred HHHHhhccCCceEeccccccccc
Confidence 667777 7888899999988886
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-08 Score=95.12 Aligned_cols=222 Identities=18% Similarity=0.131 Sum_probs=127.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHC----CCEEEEEcCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR----GWAFVDVNYGGS 535 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~----G~~v~~~d~rG~ 535 (732)
..+.+.+.+. -..+....+|.|.+.. +..++|+++++||--+.....-. .....|... ...++.+|+--.
T Consensus 68 ~~~~~~~~~~-l~~~~~~vv~lppgy~----~~~k~pvl~~~DG~~~~~~g~i~-~~~dsli~~g~i~pai~vgid~~d~ 141 (299)
T COG2382 68 PVEEILYSSE-LLSERRRVVYLPPGYN----PLEKYPVLYLQDGQDWFRSGRIP-RILDSLIAAGEIPPAILVGIDYIDV 141 (299)
T ss_pred chhhhhhhhh-hccceeEEEEeCCCCC----ccccccEEEEeccHHHHhcCChH-HHHHHHHHcCCCCCceEEecCCCCH
Confidence 3456666665 3456666778887733 47889999999995333322222 233444444 356788887311
Q ss_pred CCCChhhHHhhccCCCcccHHH-HHHHHHHHHhcCC--CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH
Q 004735 536 TGYGREFRERLLGRWGIVDVND-CCSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 611 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D-~~~~i~~l~~~~~--~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~ 611 (732)
..-.+... ..... .+. ..+.+-++.+.+. -+.++-+++|.|+||.++++++. ||++|..+++.+|.++..
T Consensus 142 ----~~R~~~~~-~n~~~-~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 142 ----KKRREELH-CNEAY-WRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred ----HHHHHHhc-ccHHH-HHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 11111111 10000 111 2234455555532 35677899999999999999998 999999999999987754
Q ss_pred HHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004735 612 MLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691 (732)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH 691 (732)
-..... ..+.....+-...+.....-++...++.+.+. ...+++++.|++.|.++.+..|+| ||
T Consensus 216 ~~~~~~-------------~~~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gH 279 (299)
T COG2382 216 PLDTQP-------------QGEVAESLKILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GH 279 (299)
T ss_pred cccccc-------------ccchhhhhhhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CC
Confidence 321100 00011111111112222232333344444444 447789999999999999999998 99
Q ss_pred cCCCcccHHHHHHHHHHHHHHHhC
Q 004735 692 GFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 692 ~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.+ ..+-..+.++|...++
T Consensus 280 dw------~~Wr~~l~~~L~~l~~ 297 (299)
T COG2382 280 DW------AWWRPALAEGLQLLLP 297 (299)
T ss_pred ch------hHhHHHHHHHHHHhhc
Confidence 65 2444455566555543
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.2e-08 Score=96.60 Aligned_cols=208 Identities=17% Similarity=0.154 Sum_probs=122.4
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
-.+.|.++++||.-++ ...|......|+.. |..|+++|.|-. |.+..-.... .....+|+...++.......
T Consensus 49 ~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~RnH---G~Sp~~~~h~--~~~ma~dv~~Fi~~v~~~~~ 121 (315)
T KOG2382|consen 49 LERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRNH---GSSPKITVHN--YEAMAEDVKLFIDGVGGSTR 121 (315)
T ss_pred cCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEecccC---CCCccccccC--HHHHHHHHHHHHHHcccccc
Confidence 4567889999997333 36666666666654 789999999843 3332211111 22345666666666654322
Q ss_pred CCCCcEEEEEcChHH-HHHHHHHh-CCCcceEEEee--cC-cC-----CHHHHHhh------c------ch---------
Q 004735 571 ADEKRLCITGGSAGG-YTTLAALA-FRDTFKAGASL--YG-VA-----DLSMLRAE------T------HK--------- 619 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG-~~a~~~~~-~p~~~~a~v~~--~~-~~-----d~~~~~~~------~------~~--------- 619 (732)
..++.|+|||||| -+++.... .|+.+..+++. +| .. ....+... . .+
T Consensus 122 --~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~ 199 (315)
T KOG2382|consen 122 --LDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEV 199 (315)
T ss_pred --cCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 3579999999999 44444444 88877666654 23 11 00000000 0 00
Q ss_pred ----hhhhhhhhhc--C----------C----hhhhhh---cCccccC--CCCCCCEEEEEeCCCCccChHHHHHHHHHH
Q 004735 620 ----FESRYIDNLV--G----------S----EKDYYE---KSPINFV--DKFSCPIILFQGLEDKVVPPDQARKIYKAL 674 (732)
Q Consensus 620 ----~~~~~~~~~~--~----------~----~~~~~~---~sp~~~~--~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (732)
....++..-+ + + .+.+.. .+.-..+ .....|+|+++|.++..++.++-.++...+
T Consensus 200 ~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~f 279 (315)
T KOG2382|consen 200 GFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKIF 279 (315)
T ss_pred hcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHhc
Confidence 0001111100 0 1 011111 1111112 445689999999999999987766665555
Q ss_pred HhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 675 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
. .+++++++++||+. ..++.+.+.+.+.+|+.+.
T Consensus 280 p----~~e~~~ld~aGHwV-h~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 280 P----NVEVHELDEAGHWV-HLEKPEEFIESISEFLEEP 313 (315)
T ss_pred c----chheeecccCCcee-ecCCHHHHHHHHHHHhccc
Confidence 4 47999999999975 4588899999999988754
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-07 Score=87.95 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=75.9
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
+.+..+||-+||.|++. ..|..+...|.+.|+.++.+||+|.+-.... .... ..-.+-...+..|+++..+
T Consensus 32 gs~~gTVv~~hGsPGSH--~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~-~~~~------~~n~er~~~~~~ll~~l~i 102 (297)
T PF06342_consen 32 GSPLGTVVAFHGSPGSH--NDFKYIRPPLDEAGIRFIGINYPGFGFTPGY-PDQQ------YTNEERQNFVNALLDELGI 102 (297)
T ss_pred CCCceeEEEecCCCCCc--cchhhhhhHHHHcCeEEEEeCCCCCCCCCCC-cccc------cChHHHHHHHHHHHHHcCC
Confidence 34456999999998775 5677788999999999999999986432111 1111 1234455566666666666
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
+ +++.++|||.||-.|+.++. +| ..++++++|.
T Consensus 103 ~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 103 K-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 5 89999999999999999998 75 4577777764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-06 Score=87.45 Aligned_cols=251 Identities=11% Similarity=0.055 Sum_probs=130.1
Q ss_pred eEEECCEEEEEeC---------CCCeEEEEeCCCCCCCc-eecCCCCCCC---CeEeeceeecCCCCEEEEEEeccCCCC
Q 004735 150 FRIFGDTVIFSNY---------KDQRLYKHSIDSKDSSP-LPITPDYGEP---LVSYADGIFDPRFNRYVTVREDRRQDA 216 (732)
Q Consensus 150 ~~~~~~~i~f~~~---------~~~~l~~~d~~~~~~~~-~~lt~~~~~~---~~~~~~~~~spdG~~l~~~~~~~~~~~ 216 (732)
+++++..++..+. .++.|-++|+++ .+. ..|.-++.++ ...-..+.+||||++++....+.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p---- 126 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP---- 126 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC----
Confidence 5555567776666 566899999987 433 3333221100 11124678999999865443321
Q ss_pred CCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCC-CCCccEEEEEEecCCCceee--eEEec
Q 004735 217 LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM-PWDKAELWVGYISENGDVYK--RVCVA 293 (732)
Q Consensus 217 ~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~-~~~~~~l~v~d~~~~g~~~~--~~~~~ 293 (732)
.+.+-++|+++++. +..+.- ||+..++-.+ +...+ .+....+..+.++.+|+... ..++.
T Consensus 127 ---~~~V~VvD~~~~kv--v~ei~v-----------p~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 127 ---SPAVGVVDLEGKAF--VRMMDV-----------PDCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred ---CCEEEEEECCCCcE--EEEEeC-----------CCCcEEEEec-CCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 26889999998872 222321 4544332221 21111 01111222223332344221 11222
Q ss_pred CCCCCccccCcCceeCC-CCcEEEEEeccCCeeeEEEEeccCCeEEEeccc---ccccCCCceeecc-cceeeeeecCCC
Q 004735 294 GFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGI-NSYEIIQSHGEK 368 (732)
Q Consensus 294 ~~~~~~~~~~~~~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~---~~~~~~~~w~~~~-~~~~~~~~~~~~ 368 (732)
..+ + .-...|.+++ ||+.+|.+.. ..|+.+|+.+.+....... ........|.++. ..+.+.+ ++
T Consensus 190 ~~~-~--~v~~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~---dg 259 (352)
T TIGR02658 190 PED-E--YLINHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR---AR 259 (352)
T ss_pred CCc-c--ccccCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC---CC
Confidence 211 0 2224555566 8887777765 5688898766543322210 0011122455533 2355554 77
Q ss_pred CEEEEEEE-------ECCEEEEEEEECCCCceE-EeccCCCceEEe-eEeCCE-EEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 369 NLIACSYR-------QNGRSYLGILDDFGHSLS-LLDIPFTDIDNI-TLGNDC-LFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 369 ~~l~~~s~-------~~g~~~ly~~~~~~~~~~-~lt~~~~~v~~~-~~~~~~-~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+++|+... .++..+|+++|.++++.. .+..+. ....+ .+.+++ ++|..... ...|.++|.++++.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~--s~~VsViD~~t~k~ 334 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTG--DKTLYIFDAETGKE 334 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCC--CCcEEEEECcCCeE
Confidence 88887543 233468999999988754 444443 33344 444455 66655533 24588999888764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=105.94 Aligned_cols=163 Identities=11% Similarity=0.086 Sum_probs=106.9
Q ss_pred eeEEECCEEEEEeC-------CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCC---CCCC
Q 004735 149 AFRIFGDTVIFSNY-------KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ---DALN 218 (732)
Q Consensus 149 ~~~~~~~~i~f~~~-------~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~---~~~~ 218 (732)
.++.+++.++|+.. ...+||+.+.. +..++++.+. ....|+|||||+.|+|+.+.... ....
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g---g~~~~lt~g~-----~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG---GVAVQVLEGH-----SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCC---CcceeeecCC-----CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 45566778888872 23489999974 5568888652 36889999999998888653110 0001
Q ss_pred ceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec--CCCce--eeeEEe-c
Q 004735 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDV--YKRVCV-A 293 (732)
Q Consensus 219 ~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~--~~g~~--~~~~~~-~ 293 (732)
...+||++++++++ .++ .....+..++|||||++|||+. ..+|++.-+. .+|+. ...+.+ .
T Consensus 428 ~~gql~~~~vd~ge---~~~--~~~g~Issl~wSpDG~RiA~i~---------~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 428 ATGQLARTPVDASA---VAS--RVPGPISELQLSRDGVRAAMII---------GGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred CCceEEEEeccCch---hhh--ccCCCcCeEEECCCCCEEEEEE---------CCEEEEEEEEeCCCCceeecccEEeec
Confidence 13689999998887 554 2233477899999999999997 1358874332 24542 111222 2
Q ss_pred CCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE
Q 004735 294 GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 294 ~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
+.. .....+.|..|++|+..+. .+...+|++++++...+.
T Consensus 494 ~l~----~~~~~l~W~~~~~L~V~~~--~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 494 GLG----DTAVSLDWRTGDSLVVGRS--DPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred ccC----CccccceEecCCEEEEEec--CCCCceEEEecCCccccc
Confidence 222 2346789999999665543 355679999998765554
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-06 Score=91.17 Aligned_cols=245 Identities=10% Similarity=0.037 Sum_probs=123.3
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC-CCCccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNIQE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~ 235 (732)
+++.+..++.|.++++.++ ++.+.+..... ........+||||++|+...... ..|+.++++ .++
T Consensus 4 ~y~~~~~~~~I~~~~~~~~-g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~~--------~~i~~~~~~~~g~--- 69 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHE-GALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRPE--------FRVLSYRIADDGA--- 69 (330)
T ss_pred EEEEcCCCCCEEEEEECCC-CceeeeeEEec--CCCCccEEECCCCCEEEEEECCC--------CcEEEEEECCCCc---
Confidence 4555566778999998642 43332221100 01123457999999866554321 456666664 344
Q ss_pred cEEccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceee-eEEecCCCCCccccCcCceeCCCC
Q 004735 236 PKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 236 ~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~-~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.+.+.. .........++|||++|+.... ....|.+++++.+|.... ...+.+. .......++|||
T Consensus 70 l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~-------~~~~v~v~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~p~g 137 (330)
T PRK11028 70 LTFAAESPLPGSPTHISTDHQGRFLFSASY-------NANCVSVSPLDKDGIPVAPIQIIEGL-----EGCHSANIDPDN 137 (330)
T ss_pred eEEeeeecCCCCceEEEECCCCCEEEEEEc-------CCCeEEEEEECCCCCCCCceeeccCC-----CcccEeEeCCCC
Confidence 322211 1122345678999998865542 134588888874454321 2222222 234567899999
Q ss_pred cEEEEEeccCCeeeEEEEeccC-CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 313 ELFFVTDRKNGFWNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 313 ~l~~~~~~~~g~~~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
+.+|+++...+ .|.++|+++ +.............. -.+.+.+.|.+ +++.+|...+.++.-.+|.++..++
T Consensus 138 ~~l~v~~~~~~--~v~v~d~~~~g~l~~~~~~~~~~~~---g~~p~~~~~~p---dg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 138 RTLWVPCLKED--RIRLFTLSDDGHLVAQEPAEVTTVE---GAGPRHMVFHP---NQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred CEEEEeeCCCC--EEEEEEECCCCcccccCCCceecCC---CCCCceEEECC---CCCEEEEEecCCCEEEEEEEeCCCC
Confidence 95556655234 466666654 333211000000000 01123345554 7777777766677777777765455
Q ss_pred ceEEecc----CC-----CceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 392 SLSLLDI----PF-----TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 392 ~~~~lt~----~~-----~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.+.+.. +. .....+ ..++++++|.+......-.+|.++.+++.
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 5433211 11 111123 34566666666443333334555444433
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-07 Score=100.21 Aligned_cols=207 Identities=17% Similarity=0.194 Sum_probs=120.6
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-----cHHHHHHHHCCCEEEEEcCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-----NLSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-----~~~~~~l~~~G~~v~~~d~rG 534 (732)
+|..+-|... .+..+.|.|... ...+.|+|| ++.. ......+ +.++++|.++||.|+++|.+.
T Consensus 190 TPg~VV~~n~----l~eLiqY~P~te-----~v~~~PLLI-VPp~--INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~n 257 (560)
T TIGR01839 190 TEGAVVFRNE----VLELIQYKPITE-----QQHARPLLV-VPPQ--INKFYIFDLSPEKSFVQYCLKNQLQVFIISWRN 257 (560)
T ss_pred CCCceeEECC----ceEEEEeCCCCC-----CcCCCcEEE-echh--hhhhheeecCCcchHHHHHHHcCCeEEEEeCCC
Confidence 4455555542 234445677541 123345554 4543 2212222 357899999999999999875
Q ss_pred CCCCChhhHHhhccCCCccc-HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHH----HHh-CCC-cceEEEeecCc
Q 004735 535 STGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA----ALA-FRD-TFKAGASLYGV 607 (732)
Q Consensus 535 ~~g~g~~~~~~~~~~~~~~~-~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~----~~~-~p~-~~~a~v~~~~~ 607 (732)
-+. + ..+++..+ ++.+.++++.+.+. ...++|.++|+|+||.+++. +++ +++ +++.++++...
T Consensus 258 P~~---~-----~r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatp 327 (560)
T TIGR01839 258 PDK---A-----HREWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSL 327 (560)
T ss_pred CCh---h-----hcCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecc
Confidence 221 1 12222211 24566777777765 34578999999999999986 444 775 79998887776
Q ss_pred CCHHHH------H--------hh---cch-------------------hhhhhhhhh-cCC-------------------
Q 004735 608 ADLSML------R--------AE---THK-------------------FESRYIDNL-VGS------------------- 631 (732)
Q Consensus 608 ~d~~~~------~--------~~---~~~-------------------~~~~~~~~~-~~~------------------- 631 (732)
.|+..- . .. ... ....+.... .++
T Consensus 328 lDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg 407 (560)
T TIGR01839 328 LDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPA 407 (560)
T ss_pred cccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchH
Confidence 654310 0 00 000 000000000 110
Q ss_pred ------hhhhhhcCccc-----------cCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 632 ------EKDYYEKSPIN-----------FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 632 ------~~~~~~~sp~~-----------~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.+.|.+..... .+++|++|+|++.|+.|.++|+..+..+.+.+.. +++++..+ +||.
T Consensus 408 ~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs---~~~fvl~~-gGHI 481 (560)
T TIGR01839 408 AFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLGG---KRRFVLSN-SGHI 481 (560)
T ss_pred HHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHcCC---CeEEEecC-CCcc
Confidence 01111111111 2678999999999999999999999888776643 67888876 4784
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.9e-07 Score=97.26 Aligned_cols=215 Identities=10% Similarity=0.008 Sum_probs=131.9
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE-cccCCCceeccccCCCCCeEEEEeccCCCC---
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNM--- 268 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~--- 268 (732)
.....+||||++|+|..+..+.+ ...|+++|+++|+ ... ......+ .+..|++||+.++|++.+....
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e----~~~l~v~Dl~tg~---~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSE----WYTLRVFDLETGK---FLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSS----EEEEEEEETTTTE---EEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCc----eEEEEEEECCCCc---CcCCccccccc-ceEEEeCCCCEEEEEEeCccccccc
Confidence 34678999999999988776655 4799999999987 221 1111112 2389999999999999777542
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC-----eEEEecc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-----EVLAIYS 342 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g-----~~~~l~~ 342 (732)
.....+||...+. ++......++.+.+.. .....+.+|+||+ +++.+........+|.+++.++ +.+.|.+
T Consensus 198 ~~~~~~v~~~~~g-t~~~~d~lvfe~~~~~--~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 198 SGYPRQVYRHKLG-TPQSEDELVFEEPDEP--FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp CGCCEEEEEEETT-S-GGG-EEEEC-TTCT--TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred CCCCcEEEEEECC-CChHhCeeEEeecCCC--cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 0014569999886 4443334555555411 1134667899999 6655555222378999999875 5666664
Q ss_pred cccccCCCceeecccceeeeeecCCCCEEEEEEEECC-EEEEEEEECCCCc---eE-EeccCCC--ceEEeeEeCCEEEE
Q 004735 343 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDDFGHS---LS-LLDIPFT--DIDNITLGNDCLFV 415 (732)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g-~~~ly~~~~~~~~---~~-~lt~~~~--~v~~~~~~~~~~~~ 415 (732)
..... ... .-. .++.+|+.++.+. ...|+.++++... .+ .+..+.. .+..+...++.+++
T Consensus 275 ~~~~~---~~~------v~~----~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 275 REDGV---EYY------VDH----HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp SSSS----EEE------EEE----ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCCce---EEE------EEc----cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 32111 000 011 4667888777544 4689999998875 33 4444433 35666555666655
Q ss_pred EEeCCCCCcEEEEEEcC
Q 004735 416 EGASGVEPSSVAKVTLD 432 (732)
Q Consensus 416 ~~~~~~~~~~ly~~dl~ 432 (732)
.. ..+...+|+++++.
T Consensus 342 ~~-~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 342 SY-RENGSSRLRVYDLD 357 (414)
T ss_dssp EE-EETTEEEEEEEETT
T ss_pred EE-EECCccEEEEEECC
Confidence 44 45667789999998
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=100.75 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHH-HCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
...|++|++||............+...+. ..+|.|+++|+++.... .+..... .. ....+++...+++|.++..+
T Consensus 34 ~~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~--~y~~a~~-~~-~~v~~~la~~l~~L~~~~g~ 109 (275)
T cd00707 34 PSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANP--NYPQAVN-NT-RVVGAELAKFLDFLVDNTGL 109 (275)
T ss_pred CCCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECcccccc--ChHHHHH-hH-HHHHHHHHHHHHHHHHhcCC
Confidence 34689999999754432222223444344 46899999999865221 1211110 00 01135778888888887556
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD 609 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d 609 (732)
+.+++.++|||+||+++..++. ++++++.++++.|...
T Consensus 110 ~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 110 SLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred ChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 7789999999999999999998 8889999999987643
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=90.31 Aligned_cols=197 Identities=16% Similarity=0.149 Sum_probs=106.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC-
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK- 570 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~- 570 (732)
..+..++.+.|.|+... .|+.+...+-. -+.++.+.++|-+. .+.+. -..|+.+.++.+..+..
T Consensus 5 ~~~~~L~cfP~AGGsa~---~fr~W~~~lp~-~iel~avqlPGR~~---r~~ep--------~~~di~~Lad~la~el~~ 69 (244)
T COG3208 5 GARLRLFCFPHAGGSAS---LFRSWSRRLPA-DIELLAVQLPGRGD---RFGEP--------LLTDIESLADELANELLP 69 (244)
T ss_pred CCCceEEEecCCCCCHH---HHHHHHhhCCc-hhheeeecCCCccc---ccCCc--------ccccHHHHHHHHHHHhcc
Confidence 45556777777764332 23333332222 48899999986443 22222 24556666666665522
Q ss_pred -CCCCcEEEEEcChHHHHHHHHHh----CCCcceEEEeec---CcCCHHHHHhhcchhhhhhhhh----------hcCCh
Q 004735 571 -ADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASLY---GVADLSMLRAETHKFESRYIDN----------LVGSE 632 (732)
Q Consensus 571 -~d~~ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~---~~~d~~~~~~~~~~~~~~~~~~----------~~~~~ 632 (732)
.-....+++||||||.+|.-++. .--...+..+.+ |..+.... ..+.-+..++.. +++|+
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~--i~~~~D~~~l~~l~~lgG~p~e~led~ 147 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQ--IHHLDDADFLADLVDLGGTPPELLEDP 147 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCC--ccCCCHHHHHHHHHHhCCCChHHhcCH
Confidence 22357999999999999988875 111123333222 21111000 000011111111 11233
Q ss_pred hhhhhcCc-----------ccc--CCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccH
Q 004735 633 KDYYEKSP-----------INF--VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI 699 (732)
Q Consensus 633 ~~~~~~sp-----------~~~--~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~ 699 (732)
+.+.-.-| +.+ -..+.+|+.++.|++|..|..++...+.+..+. ..++++|+| ||.|.. .+.
T Consensus 148 El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl~-~~~ 222 (244)
T COG3208 148 ELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFLN-QQR 222 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceehh-hhH
Confidence 32221112 111 245789999999999999988777666665543 779999986 796543 344
Q ss_pred HHHHHHHHHHHHHHh
Q 004735 700 KFTLEQQMVFFARVV 714 (732)
Q Consensus 700 ~~~~~~~~~fl~~~l 714 (732)
.+ ++.++.+.+
T Consensus 223 ~~----v~~~i~~~l 233 (244)
T COG3208 223 EE----VLARLEQHL 233 (244)
T ss_pred HH----HHHHHHHHh
Confidence 44 445555544
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.8e-07 Score=90.07 Aligned_cols=212 Identities=17% Similarity=0.222 Sum_probs=126.0
Q ss_pred CCCCEEEEEcCCCCCccCCccc-----HHHHHH-------HHCCCEEEEEcCCCCC-CC-ChhhHHhh----ccCCCccc
Q 004735 493 EKPPLLVKSHGGPTSEARGILN-----LSIQYW-------TSRGWAFVDVNYGGST-GY-GREFRERL----LGRWGIVD 554 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~-----~~~~~l-------~~~G~~v~~~d~rG~~-g~-g~~~~~~~----~~~~~~~~ 554 (732)
.+-.+||++|+..+........ .+.+.+ .-.-|-|+++|.-|++ |. |.+..... ..++....
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 3457999999964433222211 112223 2334899999988765 32 22222111 12345567
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH-------------------
Q 004735 555 VNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML------------------- 613 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~------------------- 613 (732)
+.|.+.+-+.|++...+. ++. ++|.||||+.++..+. +|+++..++.++........
T Consensus 129 i~D~V~aq~~ll~~LGI~--~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n 206 (368)
T COG2021 129 IRDMVRAQRLLLDALGIK--KLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDWN 206 (368)
T ss_pred HHHHHHHHHHHHHhcCcc--eEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCcc
Confidence 899999988888886654 565 9999999999998887 99999988887764311100
Q ss_pred ----Hh--------------------hcchhhhhhhh-----------------hhc---C-------Chhhh-------
Q 004735 614 ----RA--------------------ETHKFESRYID-----------------NLV---G-------SEKDY------- 635 (732)
Q Consensus 614 ----~~--------------------~~~~~~~~~~~-----------------~~~---~-------~~~~~------- 635 (732)
+. ....+..++.. .++ + ++..|
T Consensus 207 ~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~al 286 (368)
T COG2021 207 GGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRAL 286 (368)
T ss_pred CCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 00 00001111111 000 0 11111
Q ss_pred hhcCcccc-------CCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC-CCCcc-CCCcccHHHHHHHH
Q 004735 636 YEKSPINF-------VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE-GEQHG-FRKAENIKFTLEQQ 706 (732)
Q Consensus 636 ~~~sp~~~-------~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~-~~gH~-~~~~~~~~~~~~~~ 706 (732)
...++... ++++++|+|++.-+.|...|+++.+++.+.|+..+. +++++ ..||. |.. ........+
T Consensus 287 d~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~--e~~~~~~~i 361 (368)
T COG2021 287 DYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREIDSPYGHDAFLV--ESEAVGPLI 361 (368)
T ss_pred HhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEecCCCCchhhhc--chhhhhHHH
Confidence 11222222 677899999999999999999999999999998765 54444 56885 332 123344555
Q ss_pred HHHHH
Q 004735 707 MVFFA 711 (732)
Q Consensus 707 ~~fl~ 711 (732)
..||+
T Consensus 362 ~~fL~ 366 (368)
T COG2021 362 RKFLA 366 (368)
T ss_pred HHHhh
Confidence 55554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.72 E-value=9e-06 Score=82.52 Aligned_cols=264 Identities=12% Similarity=0.087 Sum_probs=142.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~ 166 (732)
..+.++.|+| ++.++... .++...+|..... .....+... ........+.++ ..++....++.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~----~~g~i~i~~~~~~--~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGS----GDGTIKVWDLETG--ELLRTLKGH---------TGPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred CCEEEEEEcCCCCEEEEee----cCcEEEEEEeeCC--CcEEEEecC---------CcceeEEEECCCCCEEEEEcCCCe
Confidence 4567899998 66665543 2466666665432 111111111 111223333333 24445455788
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCce
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~ 246 (732)
|+++++.++ .....+... ........|+|+++.++.... ...|.++++.+++. ...+.......
T Consensus 75 i~i~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~--~~~~~~~~~~i 138 (289)
T cd00200 75 IRLWDLETG-ECVRTLTGH----TSYVSSVAFSPDGRILSSSSR---------DKTIKVWDVETGKC--LTTLRGHTDWV 138 (289)
T ss_pred EEEEEcCcc-cceEEEecc----CCcEEEEEEcCCCCEEEEecC---------CCeEEEEECCCcEE--EEEeccCCCcE
Confidence 999999862 233344432 234566789999876444431 15788899886551 23333334456
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 325 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~ 325 (732)
....|+|+++.|+... ....|+++|+. +++. ...+.... ..+..+.|+|+++ +++... .+
T Consensus 139 ~~~~~~~~~~~l~~~~--------~~~~i~i~d~~-~~~~--~~~~~~~~----~~i~~~~~~~~~~~l~~~~~--~~-- 199 (289)
T cd00200 139 NSVAFSPDGTFVASSS--------QDGTIKLWDLR-TGKC--VATLTGHT----GEVNSVAFSPDGEKLLSSSS--DG-- 199 (289)
T ss_pred EEEEEcCcCCEEEEEc--------CCCcEEEEEcc-cccc--ceeEecCc----cccceEEECCCcCEEEEecC--CC--
Confidence 6789999988665443 12348999987 5554 33334433 4677899999998 555443 23
Q ss_pred eEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCce
Q 004735 326 NLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDI 403 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v 403 (732)
.|..+|..+++..... ....... .+.|. +++.+++....++.-.+ ++..+++ ...+......+
T Consensus 200 ~i~i~d~~~~~~~~~~~~~~~~i~---------~~~~~----~~~~~~~~~~~~~~i~i--~~~~~~~~~~~~~~~~~~i 264 (289)
T cd00200 200 TIKLWDLSTGKCLGTLRGHENGVN---------SVAFS----PDGYLLASGSEDGTIRV--WDLRTGECVQTLSGHTNSV 264 (289)
T ss_pred cEEEEECCCCceecchhhcCCceE---------EEEEc----CCCcEEEEEcCCCcEEE--EEcCCceeEEEccccCCcE
Confidence 4666777665544333 2211122 22333 33555656554555444 4555444 34444334455
Q ss_pred EEe-eEeCCEEEEEE
Q 004735 404 DNI-TLGNDCLFVEG 417 (732)
Q Consensus 404 ~~~-~~~~~~~~~~~ 417 (732)
..+ ..+++..++.+
T Consensus 265 ~~~~~~~~~~~l~~~ 279 (289)
T cd00200 265 TSLAWSPDGKRLASG 279 (289)
T ss_pred EEEEECCCCCEEEEe
Confidence 555 33333444443
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-08 Score=102.31 Aligned_cols=129 Identities=24% Similarity=0.324 Sum_probs=89.1
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHCC-CEEEEEcCCCC-CCC--ChhhH--H
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRG-WAFVDVNYGGS-TGY--GREFR--E 544 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G-~~v~~~d~rG~-~g~--g~~~~--~ 544 (732)
...+..-+|.|+. +.++.|+||++|||........ .......|+++| ++|+.+|||-. -|+ ..++. +
T Consensus 77 EDCL~LNIwaP~~------~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~ 150 (491)
T COG2272 77 EDCLYLNIWAPEV------PAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTED 150 (491)
T ss_pred ccceeEEeeccCC------CCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccc
Confidence 3447778888972 2567899999999853322211 112346788888 99999999942 222 11111 1
Q ss_pred hhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhCCC---cceEEEeecCcCC
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLYGVAD 609 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~p~---~~~a~v~~~~~~d 609 (732)
....+ .-+.|+..+++|+.++ -.-|+++|.|+|+|+|++.++.+++.|. +|+.+|+.+|...
T Consensus 151 ~~~~n---~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 151 AFASN---LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred ccccc---ccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 11112 2379999999999875 4569999999999999999999988444 7777888887653
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.8e-07 Score=89.28 Aligned_cols=203 Identities=15% Similarity=0.086 Sum_probs=115.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh--hHHhhc-----
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE--FRERLL----- 547 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~--~~~~~~----- 547 (732)
.+..++.|...+ .+..|++|.+.|.+..........++.-|.+.|++.+.+..+-.+..-.. ....+.
T Consensus 77 a~~~~~~P~~~~-----~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl 151 (348)
T PF09752_consen 77 ARFQLLLPKRWD-----SPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDL 151 (348)
T ss_pred eEEEEEECCccc-----cCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHH
Confidence 344455676521 34579999999963322222223347777888999888874321111000 000000
Q ss_pred cCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC--------------CHHH
Q 004735 548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA--------------DLSM 612 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~--------------d~~~ 612 (732)
-..|...+.+....+.|+.+++. .+++|.|.||||.+|..+++ .|..+..+-++++.+ +|..
T Consensus 152 ~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~ 228 (348)
T PF09752_consen 152 FVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDA 228 (348)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHH
Confidence 00233447788889999999853 58999999999999999988 888777666665433 2333
Q ss_pred HHhhcchhhhhhhhhhc------------------CChhhh----hhcCccccCCCCCC-----CEEEEEeCCCCccChH
Q 004735 613 LRAETHKFESRYIDNLV------------------GSEKDY----YEKSPINFVDKFSC-----PIILFQGLEDKVVPPD 665 (732)
Q Consensus 613 ~~~~~~~~~~~~~~~~~------------------~~~~~~----~~~sp~~~~~~i~~-----P~Lii~G~~D~~v~~~ 665 (732)
+...... ..|.+... .+.+.. ..+.-..++.+..+ .+.++.+++|..||..
T Consensus 229 L~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~ 306 (348)
T PF09752_consen 229 LEKQFED--TVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRH 306 (348)
T ss_pred HHHHhcc--cchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechh
Confidence 2222000 00000000 000000 11112233444443 3788899999999988
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 666 QARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
+...+.+.+. ..++.++++ ||.
T Consensus 307 ~v~~Lq~~WP----GsEvR~l~g-GHV 328 (348)
T PF09752_consen 307 GVLSLQEIWP----GSEVRYLPG-GHV 328 (348)
T ss_pred hcchHHHhCC----CCeEEEecC-CcE
Confidence 8776666554 558888887 995
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.3e-07 Score=83.29 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--C-------CCcceEEEeecCcCCHHHHHhhcchhhhhhhhhh
Q 004735 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--F-------RDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 628 (732)
Q Consensus 558 ~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~-------p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (732)
+....+|+.+++..| +|+|+|.|+.++..+++ . -..|+.+|+++|+.......
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~~~-------------- 153 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSKKL-------------- 153 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcchh--------------
Confidence 556667888899999 99999999999988875 1 11479999999986432100
Q ss_pred cCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 004735 629 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 708 (732)
Q Consensus 629 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 708 (732)
.-..+...+++|.|-+.|+.|.+++...+..+++..... .+ +.-.+||.+. +.....+.+.+
T Consensus 154 ----------~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~v-l~HpggH~VP---~~~~~~~~i~~ 215 (230)
T KOG2551|consen 154 ----------DESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TV-LEHPGGHIVP---NKAKYKEKIAD 215 (230)
T ss_pred ----------hhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eE-EecCCCccCC---CchHHHHHHHH
Confidence 011234468899999999999999999999999988753 34 4445689764 44578888999
Q ss_pred HHHHHhC
Q 004735 709 FFARVVG 715 (732)
Q Consensus 709 fl~~~l~ 715 (732)
|+...+.
T Consensus 216 fi~~~~~ 222 (230)
T KOG2551|consen 216 FIQSFLQ 222 (230)
T ss_pred HHHHHHH
Confidence 9988876
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-05 Score=82.84 Aligned_cols=233 Identities=14% Similarity=0.113 Sum_probs=118.8
Q ss_pred CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCcc------
Q 004735 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQ------ 234 (732)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~------ 234 (732)
..|.+-++|.. ++...|...-+.-.-+..|.+|++||++|+++.+-+.. ....+.+|..+ |++.
T Consensus 79 ~sG~vRIWdtt---~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-----fg~~F~~DSG~SvGei~GhSr~i 150 (603)
T KOG0318|consen 79 VSGKVRIWDTT---QKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-----FGHVFLWDSGNSVGEITGHSRRI 150 (603)
T ss_pred CcCcEEEEecc---CcceeeeeeeeecccccccceeCCCCcEEEEEecCccc-----eeEEEEecCCCccceeeccceeE
Confidence 34567777764 22333322211012245788999999999998764321 24455554332 1100
Q ss_pred --------ccEE-cccC----------------------CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC
Q 004735 235 --------EPKV-LVSG----------------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN 283 (732)
Q Consensus 235 --------~~~~-lt~~----------------------~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~ 283 (732)
.+-+ +|.+ ..|++..++||||++.+-+.. ..+++++|=. +
T Consensus 151 ns~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs--------Dgki~iyDGk-t 221 (603)
T KOG0318|consen 151 NSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS--------DGKIYIYDGK-T 221 (603)
T ss_pred eeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC--------CccEEEEcCC-C
Confidence 0222 2221 135566789999998877663 3458999866 6
Q ss_pred CceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEE-Eeccccc-cc--CCCceeecccc
Q 004735 284 GDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDA-EF--SRPLWVFGINS 358 (732)
Q Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~-~~--~~~~w~~~~~~ 358 (732)
|+. +-.+.+.+ ...+++..+.||||++ ++-.+.+ ..+-++|..+.+.. .+.-+.. +. -+-.|.
T Consensus 222 ge~--vg~l~~~~-aHkGsIfalsWsPDs~~~~T~SaD----kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq----- 289 (603)
T KOG0318|consen 222 GEK--VGELEDSD-AHKGSIFALSWSPDSTQFLTVSAD----KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ----- 289 (603)
T ss_pred ccE--EEEecCCC-CccccEEEEEECCCCceEEEecCC----ceEEEEEeeccceEEEeecCCchhceEEEEEEe-----
Confidence 654 34444322 2228899999999998 6544333 23444455555432 2321111 00 011232
Q ss_pred eeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 359 YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 359 ~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
++ .|+-.+ -.|.-..+ +++... ++.+....-.+..+ ..+++..+|.++-. ..|..++..+|.-
T Consensus 290 --------kd-~lItVS-l~G~in~l--n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD---G~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 290 --------KD-HLITVS-LSGTINYL--NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD---GHINSWDSGSGTS 354 (603)
T ss_pred --------CC-eEEEEE-cCcEEEEe--cccCCChhheecccccceeEEEEcCCCCEEEeeccC---ceEEEEecCCccc
Confidence 22 333222 34444433 443433 33344445567777 44555555555432 3566666666654
Q ss_pred eee
Q 004735 437 KAV 439 (732)
Q Consensus 437 ~~l 439 (732)
-+|
T Consensus 355 ~~~ 357 (603)
T KOG0318|consen 355 DRL 357 (603)
T ss_pred ccc
Confidence 433
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-06 Score=77.12 Aligned_cols=205 Identities=9% Similarity=0.002 Sum_probs=122.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-CEEEEEeCCCCe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQR 166 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-~~i~f~~~~~~~ 166 (732)
+.+..+.+-. |++.|- . +|+|...||-.... ...+++... .-.....+.+ +.=+++...+++
T Consensus 84 kNVtaVgF~~dgrWMyT-g---seDgt~kIWdlR~~---~~qR~~~~~---------spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYT-G---SEDGTVKIWDLRSL---SCQRNYQHN---------SPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred CceEEEEEeecCeEEEe-c---CCCceEEEEeccCc---ccchhccCC---------CCcceEEecCCcceEEeecCCCc
Confidence 4455566654 444433 2 25688788766433 122222111 0122333333 244567667889
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-cccEEcc---cC
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QEPKVLV---SG 242 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~lt---~~ 242 (732)
|+++|+... .-.++|.+++ ..........|||+.++.... +.+.|++++-++.. +....++ ..
T Consensus 148 irvWDl~~~-~c~~~liPe~---~~~i~sl~v~~dgsml~a~nn---------kG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 148 IRVWDLGEN-SCTHELIPED---DTSIQSLTVMPDGSMLAAANN---------KGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred EEEEEccCC-ccccccCCCC---CcceeeEEEcCCCcEEEEecC---------CccEEEEEccCCCccccceEhhheecc
Confidence 999999762 3456677663 455677789999999887744 36888888876431 0112222 23
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~ 322 (732)
........+|||+|+||-.+.+ ..+++++.+ +- ++-...+.+.. +.+.+..||.||+.+++... .
T Consensus 215 ~~~il~C~lSPd~k~lat~ssd--------ktv~iwn~~-~~-~kle~~l~gh~----rWvWdc~FS~dg~YlvTass-d 279 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSD--------KTVKIWNTD-DF-FKLELVLTGHQ----RWVWDCAFSADGEYLVTASS-D 279 (311)
T ss_pred cceEEEEEECCCCcEEEeecCC--------ceEEEEecC-Cc-eeeEEEeecCC----ceEEeeeeccCccEEEecCC-C
Confidence 3455577899999999977633 346777766 33 33345566665 56678899999995556554 4
Q ss_pred CeeeEEEEeccCCeEEE
Q 004735 323 GFWNLHKWIESNNEVLA 339 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~ 339 (732)
+..+|| ++..++..+
T Consensus 280 ~~~rlW--~~~~~k~v~ 294 (311)
T KOG0315|consen 280 HTARLW--DLSAGKEVR 294 (311)
T ss_pred Cceeec--ccccCceee
Confidence 555565 555555433
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-06 Score=95.94 Aligned_cols=220 Identities=9% Similarity=-0.015 Sum_probs=131.3
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
.......|||||++|+|..+..+++ ..+|+++|+.+|+.- ...+. +.. ....|+|||+.|+|...+... +
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E----~~~l~v~d~~tg~~l-~~~i~-~~~--~~~~w~~D~~~~~y~~~~~~~-~- 196 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRR----QYGIRFRNLETGNWY-PELLD-NVE--PSFVWANDSWTFYYVRKHPVT-L- 196 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcE----EEEEEEEECCCCCCC-Ccccc-Ccc--eEEEEeeCCCEEEEEEecCCC-C-
Confidence 4566778999999999987766555 489999999987610 12222 212 348999999999999864321 1
Q ss_pred CccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee-CCCCc-EEEEEeccCCeeeEEEEe--ccCCeEEEecccccc
Q 004735 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW-SSKGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSLDAE 346 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w-spDg~-l~~~~~~~~g~~~l~~~d--~~~g~~~~l~~~~~~ 346 (732)
...+||+.++. ++......++.+.+ ....-..| +.|++ +++.+.. .....++.++ ..+++.+.+......
T Consensus 197 ~~~~v~~h~lg-t~~~~d~lv~~e~~----~~~~~~~~~s~d~~~l~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (686)
T PRK10115 197 LPYQVWRHTIG-TPASQDELVYEEKD----DTFYVSLHKTTSKHYVVIHLAS-ATTSEVLLLDAELADAEPFVFLPRRKD 270 (686)
T ss_pred CCCEEEEEECC-CChhHCeEEEeeCC----CCEEEEEEEcCCCCEEEEEEEC-CccccEEEEECcCCCCCceEEEECCCC
Confidence 23679999998 66322244555443 11111234 44888 5544444 3334566555 334444444432211
Q ss_pred cCCCceeecccceeeeeecCCCCEEEEEEEEC-CEEEEEEEECC-CCceEEeccC--CCceEEeeEeCCEEEEEEeCCCC
Q 004735 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDF-GHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVE 422 (732)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~-g~~~ly~~~~~-~~~~~~lt~~--~~~v~~~~~~~~~~~~~~~~~~~ 422 (732)
. ... +.. .++.+|+.++.+ ....|+.++++ .++++.|-.+ +..+..+...++.++ +......
T Consensus 271 ~---~~~-------~~~---~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~-~~~~~~g 336 (686)
T PRK10115 271 H---EYS-------LDH---YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLV-VEERQRG 336 (686)
T ss_pred C---EEE-------EEe---CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEE-EEEEeCC
Confidence 1 111 111 456788877754 45678888887 4566666655 345777644455454 4445566
Q ss_pred CcEEEEEEcCCCcceeee
Q 004735 423 PSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 423 ~~~ly~~dl~~~~~~~lt 440 (732)
...++.+++.+++++.|+
T Consensus 337 ~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 337 LTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEEEEEcCCCCceEEec
Confidence 677999998776666554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-05 Score=80.91 Aligned_cols=234 Identities=11% Similarity=0.126 Sum_probs=131.7
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+..++++ .+++....++.++++++.+ +. ...+... ........|+|+++.++.... ...|+++
T Consensus 14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~--~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~---------~~~i~i~ 78 (289)
T cd00200 14 CVAFSPDGKLLATGSGDGTIKVWDLET--GELLRTLKGH----TGPVRDVAASADGTYLASGSS---------DKTIRLW 78 (289)
T ss_pred EEEEcCCCCEEEEeecCcEEEEEEeeC--CCcEEEEecC----CcceeEEEECCCCCEEEEEcC---------CCeEEEE
Confidence 3444433 3444444577899999876 43 2333332 223357789999987666544 2588889
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
++.+++. ...+...........|+|+++.|+ ... ....|.++|+. +++. ...+.... ..+..+
T Consensus 79 ~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~-~~~-------~~~~i~~~~~~-~~~~--~~~~~~~~----~~i~~~ 141 (289)
T cd00200 79 DLETGEC--VRTLTGHTSYVSSVAFSPDGRILS-SSS-------RDKTIKVWDVE-TGKC--LTTLRGHT----DWVNSV 141 (289)
T ss_pred EcCcccc--eEEEeccCCcEEEEEEcCCCCEEE-Eec-------CCCeEEEEECC-CcEE--EEEeccCC----CcEEEE
Confidence 9887541 344444444566788999977554 442 13458999987 5543 33344333 457788
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecc-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~ 385 (732)
.|+|++++++.... .+ .|..+|..+++...... .........|.+ +++.+++.+. ++. |.+
T Consensus 142 ~~~~~~~~l~~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~l~~~~~-~~~--i~i 203 (289)
T cd00200 142 AFSPDGTFVASSSQ-DG--TIKLWDLRTGKCVATLTGHTGEVNSVAFSP------------DGEKLLSSSS-DGT--IKL 203 (289)
T ss_pred EEcCcCCEEEEEcC-CC--cEEEEEccccccceeEecCccccceEEECC------------CcCEEEEecC-CCc--EEE
Confidence 99999875555543 23 46677776655433322 221222333332 5556666654 444 555
Q ss_pred EECCCCceE-EeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 386 LDDFGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 386 ~~~~~~~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
++..+++.. .+......+..+ ..+++.+++..+ ....++.+++.+++
T Consensus 204 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~i~~~~~~~ 252 (289)
T cd00200 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS---EDGTIRVWDLRTGE 252 (289)
T ss_pred EECCCCceecchhhcCCceEEEEEcCCCcEEEEEc---CCCcEEEEEcCCce
Confidence 566655443 332334456666 334445544443 22457777776554
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-06 Score=89.55 Aligned_cols=197 Identities=17% Similarity=0.206 Sum_probs=114.9
Q ss_pred EEEEc-CCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc--H--HHHHHHHCCCEEEEEcCCCCC--CCChhhHHhhccC
Q 004735 477 AYYYP-PSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--L--SIQYWTSRGWAFVDVNYGGST--GYGREFRERLLGR 549 (732)
Q Consensus 477 ~~~~~-P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~--~--~~~~l~~~G~~v~~~d~rG~~--g~g~~~~~~~~~~ 549 (732)
.|+.. |.... .+.-|+||++|||+......... . ....+.. ...++++||.-.. .+|..+.
T Consensus 108 ~Wlvk~P~~~~-----pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~~~~~~yP------ 175 (374)
T PF10340_consen 108 YWLVKAPNRFK-----PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSDEHGHKYP------ 175 (374)
T ss_pred EEEEeCCcccC-----CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccCCCcCc------
Confidence 36666 65421 23459999999985433222111 1 1112222 5689999997544 1222222
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh---CC---CcceEEEeecCcCCHHHHHhhcc-----
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---FR---DTFKAGASLYGVADLSMLRAETH----- 618 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---~p---~~~~a~v~~~~~~d~~~~~~~~~----- 618 (732)
....++.+..++|.+... .++|.++|-|+||.+++.++. ++ ..=+.+|+++|..++........
T Consensus 176 ---tQL~qlv~~Y~~Lv~~~G--~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~ 250 (374)
T PF10340_consen 176 ---TQLRQLVATYDYLVESEG--NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHD 250 (374)
T ss_pred ---hHHHHHHHHHHHHHhccC--CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccc
Confidence 236789999999994422 478999999999999988875 21 12478999999987762111000
Q ss_pred -----hh----hhhhhhhhcCC--hhhhhhcCccccC---------CCC--CCCEEEEEeCCCCccChHHHHHHHHHHHh
Q 004735 619 -----KF----ESRYIDNLVGS--EKDYYEKSPINFV---------DKF--SCPIILFQGLEDKVVPPDQARKIYKALKE 676 (732)
Q Consensus 619 -----~~----~~~~~~~~~~~--~~~~~~~sp~~~~---------~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~ 676 (732)
.. ...+...+.++ ++......|.... +.| ..-++|+.|+++-. ..+.+++.+.+..
T Consensus 251 n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf--rddI~~~~~~~~~ 328 (374)
T PF10340_consen 251 NEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF--RDDILEWAKKLND 328 (374)
T ss_pred cccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc--HHHHHHHHHHHhh
Confidence 00 01111111221 1111111121111 111 25799999999844 6789999999986
Q ss_pred CCC-----CEEEEEeCCCCcc
Q 004735 677 NGL-----PVALVEYEGEQHG 692 (732)
Q Consensus 677 ~g~-----~~~~~~~~~~gH~ 692 (732)
.+. ..++.+-+++.|.
T Consensus 329 ~~~~~~~~~~nv~~~~~G~Hi 349 (374)
T PF10340_consen 329 VKPNKFSNSNNVYIDEGGIHI 349 (374)
T ss_pred cCccccCCcceEEEecCCccc
Confidence 553 3577788888885
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-08 Score=111.60 Aligned_cols=127 Identities=22% Similarity=0.231 Sum_probs=81.9
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC--cccHHHHHHHHCCCEEEEEcCCCCCCCChhhH--Hhh-c
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR--ERL-L 547 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~--~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~--~~~-~ 547 (732)
.-++.-+|.|.... ...+.|++|++|||....... ........++.++++|+.+|||-.. +|--.. ... .
T Consensus 107 DCL~LnI~~P~~~~----~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~Gfl~~~~~~~~~ 181 (535)
T PF00135_consen 107 DCLYLNIYTPSNAS----SNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FGFLSLGDLDAPS 181 (535)
T ss_dssp ---EEEEEEETSSS----STTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HHH-BSSSTTSHB
T ss_pred hHHHHhhhhccccc----cccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cccccccccccCc
Confidence 45788889998733 123689999999986554443 2333455677889999999999421 110000 000 2
Q ss_pred cCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCc
Q 004735 548 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGV 607 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~ 607 (732)
+++| +.|...|++|+.++ -+-|+++|.|+|+|.||..+...+. ...+|+.+|+.+|.
T Consensus 182 gN~G---l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 182 GNYG---LLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STHH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhh---hhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 3333 78999999999875 4568999999999999999987776 35689999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=88.29 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHC--CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
.|.|+++||.+.....+.. ....+... .|.|+.+|.||.+... .. ........+.+..+.+....
T Consensus 21 ~~~i~~~hg~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~g~g~s~----~~------~~~~~~~~~~~~~~~~~~~~- 87 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRP--VFKVLPALAARYRVIAPDLRGHGRSD----PA------GYSLSAYADDLAALLDALGL- 87 (282)
T ss_pred CCeEEEeCCCCCchhhhHH--HHHHhhccccceEEEEecccCCCCCC----cc------cccHHHHHHHHHHHHHHhCC-
Confidence 3589999998655433333 11222221 1999999999665433 00 01112223334444443222
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
.++.++|||+||.+++.++. +|++++++++.++.
T Consensus 88 -~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~ 122 (282)
T COG0596 88 -EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPA 122 (282)
T ss_pred -CceEEEEecccHHHHHHHHHhcchhhheeeEecCC
Confidence 34999999999999999988 99999999988864
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-07 Score=88.49 Aligned_cols=168 Identities=21% Similarity=0.258 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCCCCccCCccc----HHHHHHHHCCCEEEEEcCCCCC--CCChh---------h-HHhhccCC-Ccc---
Q 004735 494 KPPLLVKSHGGPTSEARGILN----LSIQYWTSRGWAFVDVNYGGST--GYGRE---------F-RERLLGRW-GIV--- 553 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~----~~~~~l~~~G~~v~~~d~rG~~--g~g~~---------~-~~~~~~~~-~~~--- 553 (732)
+++-||++||... +...|. .+...|.+.++..+.+|-+-.. +.+-. . .......| ...
T Consensus 3 ~k~riLcLHG~~~--na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQ--NAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCc--CHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 3578999999843 333333 3445555547888888843211 11110 0 11111112 211
Q ss_pred -cHHHHHHHHHHHHh----cCCCCCCcEEEEEcChHHHHHHHHHh-----C----CCcceEEEeecCcCCHHHHHhhcch
Q 004735 554 -DVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALA-----F----RDTFKAGASLYGVADLSMLRAETHK 619 (732)
Q Consensus 554 -~~~D~~~~i~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~-----~----p~~~~a~v~~~~~~d~~~~~~~~~~ 619 (732)
...++.++++++.+ ++.+| +|+|+|.||.+|..++. . ...++.+|+++|+......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GPfd----GvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGPFD----GVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH---S----EEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCCeE----EEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 24445555555443 45444 99999999999987774 1 1358999999987532110
Q ss_pred hhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004735 620 FESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
........+|++|+|-++|++|.+++.+.++.+++..... .+++..++ ||.+..
T Consensus 151 ------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g-GH~vP~ 204 (212)
T PF03959_consen 151 ------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG-GHHVPR 204 (212)
T ss_dssp ------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS-SSS---
T ss_pred ------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC-CCcCcC
Confidence 0001123467899999999999999999999999988863 57777765 787643
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-06 Score=82.50 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=76.2
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
.||.++..+ .....+.-.. .....+++|+|+|++++.+....+ ..+-++|+++.. +..+. ...
T Consensus 40 ~l~~~~~~~--~~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~-------~~v~lyd~~~~~---i~~~~--~~~ 102 (194)
T PF08662_consen 40 ELFYLNEKN--IPVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMP-------AKVTLYDVKGKK---IFSFG--TQP 102 (194)
T ss_pred EEEEEecCC--CccceeeccC---CCceEEEEECcCCCEEEEEEccCC-------cccEEEcCcccE---eEeec--CCC
Confidence 688887765 4444444321 123688899999999777654221 356666776443 33332 334
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEE
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV 317 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~ 317 (732)
.+...|||+|+.|+...... -.++|.++|+. +.+. +... .. .....+.|||||+ ++..
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n-----~~G~l~~wd~~-~~~~--i~~~--~~----~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGN-----LNGDLEFWDVR-KKKK--ISTF--EH----SDATDVEWSPDGRYLATA 161 (194)
T ss_pred ceEEEECCCCCEEEEEEccC-----CCcEEEEEECC-CCEE--eecc--cc----CcEEEEEEcCCCCEEEEE
Confidence 45689999999999876432 23568899987 4432 2222 22 3456889999999 5443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.1e-05 Score=72.47 Aligned_cols=229 Identities=10% Similarity=0.016 Sum_probs=133.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCC---CC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKD---SS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~---~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.++++..++..+.++++...+ |. .++++.. .-+..+...|+||++.+-..+ + ..|.++|+.+|
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH----sH~v~dv~~s~dg~~alS~sw-D--------~~lrlWDl~~g 95 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH----SHFVSDVVLSSDGNFALSASW-D--------GTLRLWDLATG 95 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeecc----ceEecceEEccCCceEEeccc-c--------ceEEEEEecCC
Confidence 566677677777777775411 22 4555553 456789999999997433333 2 57888899998
Q ss_pred CccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 232 NIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 232 ~~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
+ .++...+. .-+...++|||.++|+--+ + ...|-++++. ++.. .+...+.+. ..+..++|+|
T Consensus 96 ~---~t~~f~GH~~dVlsva~s~dn~qivSGS-r-------DkTiklwnt~-g~ck--~t~~~~~~~---~WVscvrfsP 158 (315)
T KOG0279|consen 96 E---STRRFVGHTKDVLSVAFSTDNRQIVSGS-R-------DKTIKLWNTL-GVCK--YTIHEDSHR---EWVSCVRFSP 158 (315)
T ss_pred c---EEEEEEecCCceEEEEecCCCceeecCC-C-------cceeeeeeec-ccEE--EEEecCCCc---CcEEEEEEcC
Confidence 7 66655444 3456789999999996544 2 2336777776 3221 333333322 4567889999
Q ss_pred CCc--EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 311 KGE--LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 311 Dg~--l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
... ++..+.. ...+-.+|+++-+.+.-..+... ..+.+.++ .++.+..+..++|..-|| |+
T Consensus 159 ~~~~p~Ivs~s~---DktvKvWnl~~~~l~~~~~gh~~--------~v~t~~vS----pDGslcasGgkdg~~~Lw--dL 221 (315)
T KOG0279|consen 159 NESNPIIVSASW---DKTVKVWNLRNCQLRTTFIGHSG--------YVNTVTVS----PDGSLCASGGKDGEAMLW--DL 221 (315)
T ss_pred CCCCcEEEEccC---CceEEEEccCCcchhhccccccc--------cEEEEEEC----CCCCEEecCCCCceEEEE--Ec
Confidence 864 4444333 23466678877665543322110 11234455 455666666677766565 55
Q ss_pred CCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 389 FGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 389 ~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.++--.--.....|..+ ..++..+++.+... .|-.+|++++.
T Consensus 222 ~~~k~lysl~a~~~v~sl~fspnrywL~~at~~----sIkIwdl~~~~ 265 (315)
T KOG0279|consen 222 NEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT----SIKIWDLESKA 265 (315)
T ss_pred cCCceeEeccCCCeEeeEEecCCceeEeeccCC----ceEEEeccchh
Confidence 555432222234456666 44444444433322 37777888775
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.2e-07 Score=96.33 Aligned_cols=111 Identities=8% Similarity=-0.016 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCCCCccCCcccH-HHHHHHH--CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNL-SIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~--~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
..|++|++||.........|.. +...|.. ..|.|+++|.+|.+... +..+. ..-....+++.+.+++|.++..
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~--~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQH--YPTSA--AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCC--Ccccc--ccHHHHHHHHHHHHHHHHHhhC
Confidence 4589999999754321222332 3444432 26999999998754321 11111 0001123567778888876655
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
++.+++.|+|||+||.++..++. +|.++..++++.|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 67789999999999999999888 899999999998864
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-06 Score=79.48 Aligned_cols=151 Identities=13% Similarity=0.149 Sum_probs=90.7
Q ss_pred eceeecCCCCEEEEEEecc---CCCCCCceeEEEEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 194 ADGIFDPRFNRYVTVREDR---RQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~---~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
.+..|+|+|+.|++..... ..........||.++..+.. ...+. ...+.+...+|||+|+++|.+....+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~--- 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELKKEGPIHDVAWSPNGNEFAVIYGSMP--- 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeeccCCCceEEEEECcCCCEEEEEEccCC---
Confidence 5567999999988876522 22222346899999887765 55553 22334778999999999988863221
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCC
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~ 349 (732)
..+.++|++ ++. +..+.. .....+.|||+|++++.+..+.-...|..+|..+.+..... +......
T Consensus 83 ---~~v~lyd~~--~~~--i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~~~t~ 148 (194)
T PF08662_consen 83 ---AKVTLYDVK--GKK--IFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHSDATD 148 (194)
T ss_pred ---cccEEEcCc--ccE--eEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccCcEEE
Confidence 247777775 322 333332 23457899999994444433122245667777654432222 2222334
Q ss_pred CceeecccceeeeeecCCCCEEEEEEE
Q 004735 350 PLWVFGINSYEIIQSHGEKNLIACSYR 376 (732)
Q Consensus 350 ~~w~~~~~~~~~~~~~~~~~~l~~~s~ 376 (732)
..|+| +|++|+....
T Consensus 149 ~~WsP------------dGr~~~ta~t 163 (194)
T PF08662_consen 149 VEWSP------------DGRYLATATT 163 (194)
T ss_pred EEEcC------------CCCEEEEEEe
Confidence 55665 7887776554
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=78.07 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=74.6
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCcc--ccCCCCCC-
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPI--NFVDKFSC- 649 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~~~i~~- 649 (732)
++++|+|.|+|||.|.+++. +. + .+|+++|...+...... .++.+..|....+. ..+. ++.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~-----------~ig~~~~y~~~~~~h~~eL~-~~~p 124 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEG-----------KIDRPEEYADIATKCVTNFR-EKNR 124 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHH-----------HhCCCcchhhhhHHHHHHhh-hcCc
Confidence 46999999999999999998 54 3 45777787765432211 11111112111110 0111 233
Q ss_pred -CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 650 -PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 650 -P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
..+++..+.|.+.++.++.+.+... .+..+.+|+.|.|. ..++.+..+++|+.
T Consensus 125 ~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~---~fe~~l~~I~~F~~ 178 (180)
T PRK04940 125 DRCLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFK---NISPHLQRIKAFKT 178 (180)
T ss_pred ccEEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCC---CHHHHHHHHHHHHh
Confidence 3699999999999988777665422 15788999999985 56788899999884
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-06 Score=90.23 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=55.9
Q ss_pred CCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCC-CEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHH
Q 004735 644 VDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL-PVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 644 ~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~-~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~ 713 (732)
+++|+ +|+|.+.|++|.++++.++..+.+.....+. ..+.++.+++||. |......++.+..+.+|+.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 67788 9999999999999999999998887643332 4467778889995 455567778889999998763
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-05 Score=80.65 Aligned_cols=210 Identities=11% Similarity=0.090 Sum_probs=126.7
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC---CCCCcccccccccCCceeEEECCEEEEEeCCCCe
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT---PKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~---~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~ 166 (732)
.+..+.+.|..-+.-+.. -+++..||..+-. ....+. -..+.. .-..|++.|...+|......-
T Consensus 215 ~I~sv~FHp~~plllvaG---~d~~lrifqvDGk---~N~~lqS~~l~~fPi-------~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAG---LDGTLRIFQVDGK---VNPKLQSIHLEKFPI-------QKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred CceEEEecCCCceEEEec---CCCcEEEEEecCc---cChhheeeeeccCcc-------ceeeecCCCceEEEecccceE
Confidence 446788888555555543 3577778887544 222222 111111 123455556657777767778
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCce
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~ 246 (732)
+|.+|+.+ .+..+|.+..+-+.-....+..|||+++|+.... ...|+++...+++ ...-..-++.+
T Consensus 282 ~ysyDle~--ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---------~G~I~lLhakT~e---li~s~KieG~v 347 (514)
T KOG2055|consen 282 LYSYDLET--AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---------NGHIHLLHAKTKE---LITSFKIEGVV 347 (514)
T ss_pred EEEeeccc--cccccccCCCCcccchhheeEecCCCCeEEEccc---------CceEEeehhhhhh---hhheeeeccEE
Confidence 99999988 7777777653322223455678999998776643 3689999888776 21111234566
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
....||.||+.|+... ..+++|++|+. .... +..+.+.+ . ..-...+-|++|+++.+... .|.-+
T Consensus 348 ~~~~fsSdsk~l~~~~--------~~GeV~v~nl~-~~~~--~~rf~D~G-~--v~gts~~~S~ng~ylA~GS~-~GiVN 412 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASG--------GTGEVYVWNLR-QNSC--LHRFVDDG-S--VHGTSLCISLNGSYLATGSD-SGIVN 412 (514)
T ss_pred eeEEEecCCcEEEEEc--------CCceEEEEecC-Ccce--EEEEeecC-c--cceeeeeecCCCceEEeccC-cceEE
Confidence 7789999998886543 24479999998 3333 33333331 0 23346677899984334334 68888
Q ss_pred EEEEec--cCCeEEEec
Q 004735 327 LHKWIE--SNNEVLAIY 341 (732)
Q Consensus 327 l~~~d~--~~g~~~~l~ 341 (732)
||-.+- .++..+++.
T Consensus 413 IYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIK 429 (514)
T ss_pred EeccchhhccCCCCchh
Confidence 885432 234445444
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.6e-06 Score=94.13 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh-hHHh----hccCC-------------C-ccc
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE-FRER----LLGRW-------------G-IVD 554 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~-~~~~----~~~~~-------------~-~~~ 554 (732)
..|+||++||.. .....|..+++.|+++||.|+++|+||++..... .... ..... + ...
T Consensus 448 g~P~VVllHG~~--g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGIT--GAKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCC--CCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 468999999973 3345567788889999999999999977654221 0000 00000 0 112
Q ss_pred HHHHHHHHHHHH------hc----CCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 555 VNDCCSCATFLV------GS----GKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 555 ~~D~~~~i~~l~------~~----~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
+.|+......+. .+ ...+..++.++||||||.++..++.
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~ 574 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIA 574 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHH
Confidence 566666666665 11 1256789999999999999998887
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.7e-06 Score=84.58 Aligned_cols=243 Identities=9% Similarity=0.012 Sum_probs=139.5
Q ss_pred CCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 146 g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
++.+..+.+. .++.+...++.+-++.+++ ..-..|+.-. ..........|+|+|+..+|+..+. .-+|
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDG--k~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr--------ky~y 283 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDG--KVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR--------KYLY 283 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecC--ccChhheeee-eccCccceeeecCCCceEEEecccc--------eEEE
Confidence 4455555544 6777777777444444443 2222444320 0122335567999999777876654 5899
Q ss_pred EEEcCCCCccccEEcccC----CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 225 AIALNGQNIQEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~----~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
.+|+.+.+ +..+... ..+......||||+.|++.. ..+.|+++... +++. +..+.-.
T Consensus 284 syDle~ak---~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--------~~G~I~lLhak-T~el--i~s~Kie----- 344 (514)
T KOG2055|consen 284 SYDLETAK---VTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--------NNGHIHLLHAK-TKEL--ITSFKIE----- 344 (514)
T ss_pred Eeeccccc---cccccCCCCcccchhheeEecCCCCeEEEcc--------cCceEEeehhh-hhhh--hheeeec-----
Confidence 99999988 5554321 12344567899999988765 45568888877 6655 3333222
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
+.+..+.|+.||+.++.+.. ..++|.+|+...........+..+.+.. +..+. ++. ++.+....|.
T Consensus 345 G~v~~~~fsSdsk~l~~~~~---~GeV~v~nl~~~~~~~rf~D~G~v~gts-------~~~S~---ng~-ylA~GS~~Gi 410 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGG---TGEVYVWNLRQNSCLHRFVDDGSVHGTS-------LCISL---NGS-YLATGSDSGI 410 (514)
T ss_pred cEEeeEEEecCCcEEEEEcC---CceEEEEecCCcceEEEEeecCccceee-------eeecC---CCc-eEEeccCcce
Confidence 56788999999994444433 3379999987765443332322222211 11111 444 4444456788
Q ss_pred EEEEEEEC--CCCceEEeccC---CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 381 SYLGILDD--FGHSLSLLDIP---FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 381 ~~ly~~~~--~~~~~~~lt~~---~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
.+||-.+. .++..+++..- -..|+.+ ...+.+++.++++.. ...+-++.+.+
T Consensus 411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~-knalrLVHvPS 468 (514)
T KOG2055|consen 411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK-KNALRLVHVPS 468 (514)
T ss_pred EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc-ccceEEEeccc
Confidence 89996542 23344444432 2345555 456677777776532 33444444443
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-05 Score=82.10 Aligned_cols=148 Identities=17% Similarity=0.229 Sum_probs=109.4
Q ss_pred HhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeec-CcCCHHHHHhh----cc-hh----hhhh---hhhhcCCh
Q 004735 566 VGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY-GVADLSMLRAE----TH-KF----ESRY---IDNLVGSE 632 (732)
Q Consensus 566 ~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~-~~~d~~~~~~~----~~-~~----~~~~---~~~~~~~~ 632 (732)
.++..++.++.++.|.|==|..++.+++.++|++|++.+. .+.++...... .. .+ ...+ +...++.+
T Consensus 164 ~~~~~~~i~~FvV~GaSKRGWTtWltaa~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~tp 243 (367)
T PF10142_consen 164 KKKFGVNIEKFVVTGASKRGWTTWLTAAVDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDTP 243 (367)
T ss_pred HhhcCCCccEEEEeCCchHhHHHHHhhccCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCCH
Confidence 3345677899999999999999998888778999988664 44554433221 11 11 1111 11111222
Q ss_pred ---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 633 ---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 633 ---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
+...-.+|+.+.++++.|.+++.|..|....++.+.-+++.|+. +..+..+|+.+|+... .+..+.+..|
T Consensus 244 ~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~~f 316 (367)
T PF10142_consen 244 EFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSLRAF 316 (367)
T ss_pred HHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHHHHH
Confidence 34466789999999999999999999999999999999999985 5689999999998754 6788899999
Q ss_pred HHHHhCCCCCC
Q 004735 710 FARVVGHFDVA 720 (732)
Q Consensus 710 l~~~l~~~~~~ 720 (732)
+...+.+.+-|
T Consensus 317 ~~~~~~~~~lP 327 (367)
T PF10142_consen 317 YNRIQNGRPLP 327 (367)
T ss_pred HHHHHcCCCCC
Confidence 99988754443
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-05 Score=79.13 Aligned_cols=225 Identities=11% Similarity=0.008 Sum_probs=130.7
Q ss_pred CceeEEE-CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 147 GGAFRIF-GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 147 ~~~~~~~-~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
...|.+. .+.-+.+...|+.+-++++++. .....|+.. ..++...+|+|+|++|.-.+-+.. -.|
T Consensus 222 ~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-~~l~~l~gH----~~RVs~VafHPsG~~L~TasfD~t-------WRl-- 287 (459)
T KOG0272|consen 222 AAVFHPVDSDLNLATASADGTVKLWKLSQE-TPLQDLEGH----LARVSRVAFHPSGKFLGTASFDST-------WRL-- 287 (459)
T ss_pred eEEEccCCCccceeeeccCCceeeeccCCC-cchhhhhcc----hhhheeeeecCCCceeeecccccc-------hhh--
Confidence 3445554 2333445556776666666541 234456654 578899999999999776655442 344
Q ss_pred EEcCCCCccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 226 IALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
+|+.++. .-.+..|. ..+...+|-|||.-++--..|.- =.|+|+. +|.. +..+.+.- ..+.
T Consensus 288 WD~~tk~---ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~--------~RvWDlR-tgr~--im~L~gH~----k~I~ 349 (459)
T KOG0272|consen 288 WDLETKS---ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL--------GRVWDLR-TGRC--IMFLAGHI----KEIL 349 (459)
T ss_pred cccccch---hhHhhcccccccceeEecCCCceeeccCccch--------hheeecc-cCcE--EEEecccc----ccee
Confidence 4888776 33333333 45667899999995543332221 2455887 7744 67777764 5678
Q ss_pred CceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 305 ~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
.+.|||+|..+.+... .+..+|| |+......-+. |.-+.....+.|.+ ..+.+++++.-++..+||
T Consensus 350 ~V~fsPNGy~lATgs~-Dnt~kVW--DLR~r~~ly~i--------pAH~nlVS~Vk~~p---~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSS-DNTCKVW--DLRMRSELYTI--------PAHSNLVSQVKYSP---QEGYFLVTASYDNTVKIW 415 (459)
T ss_pred eEeECCCceEEeecCC-CCcEEEe--eecccccceec--------ccccchhhheEecc---cCCeEEEEcccCcceeee
Confidence 8999999973333322 3455555 44332221111 12222233344443 567788888888888888
Q ss_pred EEECCCCceEEeccCCCceEEe-eEeCCEEEEEEe
Q 004735 385 ILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 385 ~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~ 418 (732)
.- .....++.|...+..|..+ ...++.++..++
T Consensus 416 s~-~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 416 ST-RTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred cC-CCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 52 2223455666667777777 345555554443
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-05 Score=80.96 Aligned_cols=159 Identities=14% Similarity=0.158 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhcCCCCC--CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhh---------h
Q 004735 555 VNDCCSCATFLVGSGKADE--KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFE---------S 622 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~--~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~---------~ 622 (732)
..|+..|+.++.+...-.. -++.++|+|+|||++..++. .|-.+.+++-.++..-...-.--..... .
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~ 242 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEF 242 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccccccc
Confidence 5677778888877632222 48999999999999999999 9999999998877654321100000000 0
Q ss_pred ---------hhhhhhcC---------ChhhhhhcCccc--c---CCCC-C-CCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 623 ---------RYIDNLVG---------SEKDYYEKSPIN--F---VDKF-S-CPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 623 ---------~~~~~~~~---------~~~~~~~~sp~~--~---~~~i-~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
.+....|. ..+.+.-+..++ + .++. + +-....|+..|..+|.++-.++++.+++.
T Consensus 243 ~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~l 322 (403)
T PF11144_consen 243 FNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKNL 322 (403)
T ss_pred cccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHHc
Confidence 00000000 111111111111 0 1122 2 33566799999999999999999999999
Q ss_pred CCCEEEEEeC-----------CCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 678 GLPVALVEYE-----------GEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 678 g~~~~~~~~~-----------~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
|-+++++.+. +..|++.. ..+..+...+.-+.+.++
T Consensus 323 gfda~l~lIkdes~iDGkfIKnl~HGmgi--s~k~Lf~KeLp~~lek~~ 369 (403)
T PF11144_consen 323 GFDATLHLIKDESEIDGKFIKNLEHGMGI--SDKALFKKELPLMLEKLQ 369 (403)
T ss_pred CCCeEEEEecChhhccchheeccccCCCC--CHHHHHHHHhHHHHHHhh
Confidence 9999999984 34687654 335666666666655554
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-05 Score=82.88 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=41.1
Q ss_pred CCCCCCCEEEEEeCCCCccChHHHHHH-------HHHHHhCCCCEEEEEeCCCCcc
Q 004735 644 VDKFSCPIILFQGLEDKVVPPDQARKI-------YKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 644 ~~~i~~P~Lii~G~~D~~v~~~~~~~~-------~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
+++|++|+.+++|..|.++|++|+..+ .+.++..|..+-+.+.+.-||-
T Consensus 293 Lr~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhhCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 778999999999999999999999443 3457777877888888889993
|
Their function is unknown. |
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-05 Score=78.55 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=111.4
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-c----ccHHHHHHHHCCCEEEEE
Q 004735 456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-I----LNLSIQYWTSRGWAFVDV 530 (732)
Q Consensus 456 ~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~----~~~~~~~l~~~G~~v~~~ 530 (732)
.......++.+.. |+..+.++...-+. .++...||+.-|........ . ...+.....+.|.+|+.+
T Consensus 107 ~~~~~~kRv~Iq~--D~~~IDt~~I~~~~-------a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~f 177 (365)
T PF05677_consen 107 DEVSSVKRVPIQY--DGVKIDTMAIHQPE-------AKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVF 177 (365)
T ss_pred ccccceeeEEEee--CCEEEEEEEeeCCC-------CCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEE
Confidence 4445567778876 79988877765322 34567899988863322221 1 134555566779999999
Q ss_pred cCCCCCCC-ChhhHHhhccCCCcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEEEe
Q 004735 531 NYGGSTGY-GREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-F----RDTFKAGAS 603 (732)
Q Consensus 531 d~rG~~g~-g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~----p~~~~a~v~ 603 (732)
||||-+.+ |....+ ..+.|..++++||.++ ..+.+++|++.|||.||.++..++. + .|-++-.++
T Consensus 178 NYpGVg~S~G~~s~~--------dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~i 249 (365)
T PF05677_consen 178 NYPGVGSSTGPPSRK--------DLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLI 249 (365)
T ss_pred CCCccccCCCCCCHH--------HHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEE
Confidence 99985432 222122 2378899999999875 3567899999999999999887765 2 233443333
Q ss_pred -ecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCC
Q 004735 604 -LYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLE 658 (732)
Q Consensus 604 -~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~ 658 (732)
--++.++.......-.-...++-.+++ .+.+.....+++.||-+++|+.+
T Consensus 250 kDRsfssl~~vas~~~~~~~~~l~~l~g-----WnidS~K~s~~l~cpeIii~~~d 300 (365)
T PF05677_consen 250 KDRSFSSLAAVASQFFGPIGKLLIKLLG-----WNIDSAKNSEKLQCPEIIIYGVD 300 (365)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHhc-----cCCCchhhhccCCCCeEEEeccc
Confidence 345555554332111111112222221 22345566677889999999874
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00026 Score=77.71 Aligned_cols=206 Identities=15% Similarity=0.188 Sum_probs=108.2
Q ss_pred eEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-----cccEEcccCCCceeccccCCCCCeEEEEecc
Q 004735 191 VSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-----QEPKVLVSGSDFYAFPRMDPRGERMAWIEWH 264 (732)
Q Consensus 191 ~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~-----~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~ 264 (732)
....+..|+| |++.|+....+ ..|.++|+.++.. .....+......+....|+|++..++....
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~D---------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs- 145 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASED---------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG- 145 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC---------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe-
Confidence 4467788999 88876555442 4677778765420 002233333445667899998754433331
Q ss_pred CCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE-eccc
Q 004735 265 HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSL 343 (732)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~ 343 (732)
....|.++|+. +++. ...+.+.. ..+..+.|+|||+++++... .+ .|.++|+.+++... +...
T Consensus 146 ------~DgtVrIWDl~-tg~~--~~~l~~h~----~~V~sla~spdG~lLatgs~-Dg--~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 146 ------ADMVVNVWDVE-RGKA--VEVIKCHS----DQITSLEWNLDGSLLCTTSK-DK--KLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred ------CCCEEEEEECC-CCeE--EEEEcCCC----CceEEEEEECCCCEEEEecC-CC--EEEEEECCCCcEEEEEecC
Confidence 13448899998 6654 44455443 56778999999995555544 34 46667887765432 2211
Q ss_pred cc-ccCCCceeecccceeeeeecCCCCEEEEEEE-ECCEEEEEEEECCCCc--eEEeccCCCc-e-EEeeEeCCEEEEEE
Q 004735 344 DA-EFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHS--LSLLDIPFTD-I-DNITLGNDCLFVEG 417 (732)
Q Consensus 344 ~~-~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~-~~g~~~ly~~~~~~~~--~~~lt~~~~~-v-~~~~~~~~~~~~~~ 417 (732)
.. ......|.+ +++.++.... ......|.++|+.... ...+...... + ..+...++.+++.+
T Consensus 210 ~~~~~~~~~w~~------------~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lg 277 (493)
T PTZ00421 210 ASAKSQRCLWAK------------RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIG 277 (493)
T ss_pred CCCcceEEEEcC------------CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEE
Confidence 10 011123332 4455544332 1112334455654432 2222211111 1 12234555666666
Q ss_pred eCCCCCcEEEEEEcCCCcc
Q 004735 418 ASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 418 ~~~~~~~~ly~~dl~~~~~ 436 (732)
+..+ ..|..+|+..+++
T Consensus 278 gkgD--g~Iriwdl~~~~~ 294 (493)
T PTZ00421 278 SKGE--GNIRCFELMNERL 294 (493)
T ss_pred EeCC--CeEEEEEeeCCce
Confidence 5333 3577777777664
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=90.01 Aligned_cols=263 Identities=13% Similarity=0.046 Sum_probs=137.6
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceec-CCCCCCCCeEeeceeecCCCCEEEE-EEeccCCCCCCceeEEEEEEcCCCC
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVT-VREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~~l-t~~~~~~~~~~~~~~~spdG~~l~~-~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
.+|+|++...++|.++|.++ ..++.+ +.. ......|.|||||++|+| +.-..-.. ...||+.++.+..
T Consensus 319 tkiAfv~~~~~~L~~~D~dG--~n~~~ve~~~----~~~i~sP~~SPDG~~vAY~ts~e~~~g----~s~vYv~~L~t~~ 388 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTK--GASRAVEIED----TISVYHPDISPDGKKVAFCTGIEGLPG----KSSVYVRNLNASG 388 (912)
T ss_pred eeEEEEEcCCCeEEEEecCC--CCceEEEecC----CCceecCcCCCCCCEEEEEEeecCCCC----CceEEEEehhccC
Confidence 37999987666999999997 778877 544 345578899999999999 53322011 3689999998744
Q ss_pred ccccEEcccCCCceecccc--CCCCC-eEEEEeccCCC---CCCCccEEEEEEecCCCceeeeEE-ecCCCCCccccCcC
Q 004735 233 IQEPKVLVSGSDFYAFPRM--DPRGE-RMAWIEWHHPN---MPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVESPTE 305 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~--SPDG~-~la~~~~~~~~---~~~~~~~l~v~d~~~~g~~~~~~~-~~~~~~~~~~~~~~ 305 (732)
.. +..|.- +..+-|+| ..+|. -|+|++....+ ..|....-|.+... +|+....+. +.+. + .
T Consensus 389 ~~-~vkl~v--e~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~-~gkfg~p~kl~dga------~--h 456 (912)
T TIGR02171 389 SG-LVKLPV--ENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFA-NGKFGTPKKLFDGA------Y--H 456 (912)
T ss_pred CC-ceEeec--ccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEec-CCCCCCchhhhccc------c--c
Confidence 11 233321 23345777 55554 47788733222 23445567889998 787654443 3332 1 1
Q ss_pred ceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccccc-CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF-SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 306 ~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
-..|.|.+|.++..+ -=..++.--++++++...--.++... .+.. ..+.+.-.||+--+.-+.-++...-.-..+|.
T Consensus 457 ggvs~~~~lavtga~-llr~~~~~~~~~~~~~~vwyn~eqacn~sl~-~d~~~rt~fldfgg~tg~~fvg~~y~~he~~l 534 (912)
T TIGR02171 457 GGVSEDLNLAVSGAR-LLRAHVANEDVDNGKDDVWYNGEQACNASLA-KDGSKRTLFLDFGGSTGQAFVGQKYGVHERLL 534 (912)
T ss_pred cccccCCceeeehhh-HhhhhhcccccccCccceeecchhccchhhh-ccCCcceEEEecCCccchhhccccccceeEEE
Confidence 224556556655433 10111111112223222211111100 0000 00111111221000001111111122245677
Q ss_pred EEECCCCceEEeccCCC---ceEEeeE-eCCEEEEEEeCCCCC-cEEEEEEcCCCcceeeee
Q 004735 385 ILDDFGHSLSLLDIPFT---DIDNITL-GNDCLFVEGASGVEP-SSVAKVTLDDHKLKAVDF 441 (732)
Q Consensus 385 ~~~~~~~~~~~lt~~~~---~v~~~~~-~~~~~~~~~~~~~~~-~~ly~~dl~~~~~~~lt~ 441 (732)
+.|..|+.++.+..|.+ +....+. ..+.++..-++.++. ..|.++++.++++..|-+
T Consensus 535 vads~gklv~~v~ap~gytfdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~e 596 (912)
T TIGR02171 535 VADSKGKLVRAVAAPAGYTFDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELVE 596 (912)
T ss_pred EecCCCchhhhccCCCCccccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEeec
Confidence 88877777777776633 2222333 245556666666654 459999999998866654
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=73.76 Aligned_cols=196 Identities=16% Similarity=0.127 Sum_probs=110.4
Q ss_pred ceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccC-CCCCeEEEEeccCCCCCCCcc
Q 004735 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMD-PRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~S-PDG~~la~~~~~~~~~~~~~~ 273 (732)
.|.|.++...|+++.-. ...|+++++++++ .+.+.... ..+..+. +||+ |++.. . .
T Consensus 4 gp~~d~~~g~l~~~D~~--------~~~i~~~~~~~~~---~~~~~~~~--~~G~~~~~~~g~-l~v~~--~-------~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP--------GGRIYRVDPDTGE---VEVIDLPG--PNGMAFDRPDGR-LYVAD--S-------G 60 (246)
T ss_dssp EEEEETTTTEEEEEETT--------TTEEEEEETTTTE---EEEEESSS--EEEEEEECTTSE-EEEEE--T-------T
T ss_pred ceEEECCCCEEEEEEcC--------CCEEEEEECCCCe---EEEEecCC--CceEEEEccCCE-EEEEE--c-------C
Confidence 47899966666777432 2699999999887 54444332 3445566 6754 65554 1 1
Q ss_pred EEEEEEecCCCceeeeEEecCCC-CCccccCcCceeCCCCcEEEEEeccC---Ce--eeEEEEeccCCeEEEeccccccc
Q 004735 274 ELWVGYISENGDVYKRVCVAGFD-PTIVESPTEPKWSSKGELFFVTDRKN---GF--WNLHKWIESNNEVLAIYSLDAEF 347 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~-~~~~~~~~~~~wspDg~l~~~~~~~~---g~--~~l~~~d~~~g~~~~l~~~~~~~ 347 (732)
.+.++|++ +|+.+.+....... +. ..+....+++||++|+...... .. ..||+++++ ++.+.+...-...
T Consensus 61 ~~~~~d~~-~g~~~~~~~~~~~~~~~--~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p 136 (246)
T PF08450_consen 61 GIAVVDPD-TGKVTVLADLPDGGVPF--NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP 136 (246)
T ss_dssp CEEEEETT-TTEEEEEEEEETTCSCT--EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE
T ss_pred ceEEEecC-CCcEEEEeeccCCCccc--CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc
Confidence 25666887 78765444432111 11 5567889999999777654311 11 579999998 7766665332111
Q ss_pred CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC--CCce---EEe-ccCC--CceEEe-eEeCCEEEEEEe
Q 004735 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF--GHSL---SLL-DIPF--TDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~--~~~~---~~l-t~~~--~~v~~~-~~~~~~~~~~~~ 418 (732)
....|++ +++.||++....+. ||+++++ ++++ +.+ .... .....+ .+.++++++...
T Consensus 137 NGi~~s~------------dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 137 NGIAFSP------------DGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEEEET------------TSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred cceEECC------------cchheeecccccce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence 2233443 77788876544444 6666654 4422 222 1222 235556 444566555433
Q ss_pred CCCCCcEEEEEEcCCCc
Q 004735 419 SGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 419 ~~~~~~~ly~~dl~~~~ 435 (732)
....|++++.+ |+
T Consensus 203 ---~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 203 ---GGGRIVVFDPD-GK 215 (246)
T ss_dssp ---TTTEEEEEETT-SC
T ss_pred ---CCCEEEEECCC-cc
Confidence 33589999987 44
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00018 Score=74.42 Aligned_cols=128 Identities=9% Similarity=-0.105 Sum_probs=74.6
Q ss_pred CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE-EcccCCCceeccccCCCCCeEEEEeccCCCCCC--CccEEEE
Q 004735 201 RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWV 277 (732)
Q Consensus 201 dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~--~~~~l~v 277 (732)
|+++ +|+.+..... ..++|+++|.++++ +. .+..+..- .. .+||||+.||....-.+...+ ....|-+
T Consensus 11 ~~~~-v~V~d~~~~~---~~~~v~ViD~~~~~---v~g~i~~G~~P-~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v 81 (352)
T TIGR02658 11 DARR-VYVLDPGHFA---ATTQVYTIDGEAGR---VLGMTDGGFLP-NP-VVASDGSFFAHASTVYSRIARGKRTDYVEV 81 (352)
T ss_pred CCCE-EEEECCcccc---cCceEEEEECCCCE---EEEEEEccCCC-ce-eECCCCCEEEEEeccccccccCCCCCEEEE
Confidence 5565 6766543110 02689999999877 43 33333222 22 489999998766531110000 2345899
Q ss_pred EEecCCCceeeeEEecCCCC-CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE
Q 004735 278 GYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 278 ~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
+|+. +++......++.... .-.........||||+.+|+++. .....+-++|+.+++...
T Consensus 82 ~D~~-t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 82 IDPQ-THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EECc-cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCCCcEEE
Confidence 9998 776633333322210 00023447789999996666665 445678899998887543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-05 Score=81.00 Aligned_cols=197 Identities=13% Similarity=0.021 Sum_probs=107.9
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cC-CCceeccccCCCCCeEEEEeccCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SG-SDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~-~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
..+.-..||||.++++.-.- . ..+.++|.++|. .+.+- .+ .......+|-|||.+++.-+.
T Consensus 270 ~~V~yi~wSPDdryLlaCg~-~--------e~~~lwDv~tgd---~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~----- 332 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACGF-D--------EVLSLWDVDTGD---LRHLYPSGLGFSVSSCAWCPDGFRFVTGSP----- 332 (519)
T ss_pred CceEEEEECCCCCeEEecCc-h--------HheeeccCCcch---hhhhcccCcCCCcceeEEccCCceeEecCC-----
Confidence 34455679999998765422 1 358888999987 54443 23 233456799999999764432
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccccccc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF 347 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~ 347 (732)
...++..|++ +.....+. +.. . .-+..++.++||+ ++.+..+ ..|..++..+...+.+..++..+
T Consensus 333 ---dr~i~~wdlD-gn~~~~W~---gvr-~--~~v~dlait~Dgk~vl~v~~d----~~i~l~~~e~~~dr~lise~~~i 398 (519)
T KOG0293|consen 333 ---DRTIIMWDLD-GNILGNWE---GVR-D--PKVHDLAITYDGKYVLLVTVD----KKIRLYNREARVDRGLISEEQPI 398 (519)
T ss_pred ---CCcEEEecCC-cchhhccc---ccc-c--ceeEEEEEcCCCcEEEEEecc----cceeeechhhhhhhccccccCce
Confidence 2348888887 32221111 110 0 2356778899999 5554433 34666666665555444443222
Q ss_pred CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEe---ccCCCceEEeeEeCC-EEEEEEeCCCC
Q 004735 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLL---DIPFTDIDNITLGND-CLFVEGASGVE 422 (732)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~l---t~~~~~v~~~~~~~~-~~~~~~~~~~~ 422 (732)
.. +..+ ++++++...-.+..-+|| |++... +++- +.+..-+.+.....+ .++..+ ..
T Consensus 399 ts---------~~iS----~d~k~~LvnL~~qei~LW--Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSG---SE 460 (519)
T KOG0293|consen 399 TS---------FSIS----KDGKLALVNLQDQEIHLW--DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASG---SE 460 (519)
T ss_pred eE---------EEEc----CCCcEEEEEcccCeeEEe--ecchhhHHHHhhcccccceEEEeccCCCCcceEEec---CC
Confidence 22 2222 455555555555556666 444222 2211 122333444432222 333333 33
Q ss_pred CcEEEEEEcCCCcc
Q 004735 423 PSSVAKVTLDDHKL 436 (732)
Q Consensus 423 ~~~ly~~dl~~~~~ 436 (732)
...+|.++..+|++
T Consensus 461 D~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 461 DSKVYIWHRISGKL 474 (519)
T ss_pred CceEEEEEccCCce
Confidence 46799999988875
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=85.58 Aligned_cols=181 Identities=15% Similarity=0.200 Sum_probs=114.6
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC-C
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-G 539 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~-g 539 (732)
.+...+.+. ||.+|..++..-.... .+....+||++-|..+.-.. ..+..-++.||.|+..|.+|-.|+ |
T Consensus 214 G~R~kiks~-dgneiDtmF~d~r~n~----~~ngq~LvIC~EGNAGFYEv----G~m~tP~~lgYsvLGwNhPGFagSTG 284 (517)
T KOG1553|consen 214 GQRLKIKSS-DGNEIDTMFLDGRPNQ----SGNGQDLVICFEGNAGFYEV----GVMNTPAQLGYSVLGWNHPGFAGSTG 284 (517)
T ss_pred CeEEEEeec-CCcchhheeecCCCCC----CCCCceEEEEecCCccceEe----eeecChHHhCceeeccCCCCccccCC
Confidence 356778887 8999987777554211 24556789998885221111 122334678999999999876553 2
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh-c
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-T 617 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~-~ 617 (732)
..+ ...+...+.+++++.++......+.|+|.|+|-||+.+++++. +|+ ++++|+-+.+-|+..+... .
T Consensus 285 ~P~--------p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl~rM 355 (517)
T KOG1553|consen 285 LPY--------PVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLALFRM 355 (517)
T ss_pred CCC--------cccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHhhhc
Confidence 222 2234566778889999887788899999999999999999999 997 8999999988887655322 1
Q ss_pred chhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCcc
Q 004735 618 HKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVV 662 (732)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v 662 (732)
..+........+ ..+....-...+.+.+.|+++|--.+|.++
T Consensus 356 P~~~~giV~~ai---Rnh~NLnnaell~ry~GPi~lIRRt~dEIi 397 (517)
T KOG1553|consen 356 PTFFSGIVEHAI---RNHMNLNNAELLARYKGPIRLIRRTQDEII 397 (517)
T ss_pred hHHHHHHHHHHH---HHhcccchHHHHHhhcCchhHhhhhhHhhh
Confidence 112222111111 111111122233445667777766666554
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.3e-06 Score=75.82 Aligned_cols=180 Identities=16% Similarity=0.113 Sum_probs=106.1
Q ss_pred EEEEEcCC-CCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 497 LLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 497 ~vl~~HGg-~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
++|++-|- +|. ..-...+..|+++|+.|+.+|-.- -|. ...-......|+...+++..++- ..++
T Consensus 4 ~~v~~SGDgGw~---~~d~~~a~~l~~~G~~VvGvdsl~------Yfw---~~rtP~~~a~Dl~~~i~~y~~~w--~~~~ 69 (192)
T PF06057_consen 4 LAVFFSGDGGWR---DLDKQIAEALAKQGVPVVGVDSLR------YFW---SERTPEQTAADLARIIRHYRARW--GRKR 69 (192)
T ss_pred EEEEEeCCCCch---hhhHHHHHHHHHCCCeEEEechHH------HHh---hhCCHHHHHHHHHHHHHHHHHHh--CCce
Confidence 56777663 222 222347889999999999999530 011 11112234778888888877763 3579
Q ss_pred EEEEEcChHHHHHHHHHh-CCC----cceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCC-C
Q 004735 576 LCITGGSAGGYTTLAALA-FRD----TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS-C 649 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~ 649 (732)
++|+|+|+|+-+.-.+.. .|+ +++.+++++|..... |+-. ...+++....-....+...+.++. .
T Consensus 70 vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~d--------Feih-v~~wlg~~~~~~~~~~~pei~~l~~~ 140 (192)
T PF06057_consen 70 VVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTAD--------FEIH-VSGWLGMGGDDAAYPVIPEIAKLPPA 140 (192)
T ss_pred EEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcce--------EEEE-hhhhcCCCCCcccCCchHHHHhCCCC
Confidence 999999999987777665 443 677888877753211 1000 011111111011123444555665 5
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
|++.++|++|.-.. ...++.. +++.+..|| ||.|.. +.....+.+++-++
T Consensus 141 ~v~CiyG~~E~d~~-------cp~l~~~--~~~~i~lpG-gHHfd~--dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 141 PVQCIYGEDEDDSL-------CPSLRQP--GVEVIALPG-GHHFDG--DYDALAKRILDALK 190 (192)
T ss_pred eEEEEEcCCCCCCc-------CccccCC--CcEEEEcCC-CcCCCC--CHHHHHHHHHHHHh
Confidence 89999998886422 2223333 568888987 566753 45566666665544
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00014 Score=79.76 Aligned_cols=201 Identities=13% Similarity=0.094 Sum_probs=120.5
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc-CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL-NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~-~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
.....+.+|||||+.++-...+ ..|.++|+ +.+.. .+.+......+....|+|+|+.|+-.+.+
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D---------~tiriwd~~~~~~~--~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D---- 267 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDD---------KTLRIWDLKDDGRN--LKTLKGHSTYVTSVAFSPDGNLLVSGSDD---- 267 (456)
T ss_pred ccceeeeEECCCCcEEEEecCC---------ceEEEeeccCCCeE--EEEecCCCCceEEEEecCCCCEEEEecCC----
Confidence 5567889999999976555442 47888888 44341 44555555677889999999766655522
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEE---Eeccccc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLDA 345 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~---~l~~~~~ 345 (732)
..+.++|+. +|+. ...+.+.. ..+....+++||+++..+.. . ..|.++|..++..+ .+...+
T Consensus 268 ----~tvriWd~~-~~~~--~~~l~~hs----~~is~~~f~~d~~~l~s~s~-d--~~i~vwd~~~~~~~~~~~~~~~~- 332 (456)
T KOG0266|consen 268 ----GTVRIWDVR-TGEC--VRKLKGHS----DGISGLAFSPDGNLLVSASY-D--GTIRVWDLETGSKLCLKLLSGAE- 332 (456)
T ss_pred ----CcEEEEecc-CCeE--EEeeeccC----CceEEEEECCCCCEEEEcCC-C--ccEEEEECCCCceeeeecccCCC-
Confidence 348888998 6766 56667665 66778899999995555543 3 45677788888843 222221
Q ss_pred ccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCceEEe----eEeCCEEEEEEeCC
Q 004735 346 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI----TLGNDCLFVEGASG 420 (732)
Q Consensus 346 ~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v~~~----~~~~~~~~~~~~~~ 420 (732)
... +.. ...|.+ +++ ++++...++.-.+|.+ ..+. .+..+.....+..+ ...++.+++..+..
T Consensus 333 ~~~-~~~-----~~~fsp---~~~-~ll~~~~d~~~~~w~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 333 NSA-PVT-----SVQFSP---NGK-YLLSASLDRTLKLWDL--RSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred CCC-cee-----EEEECC---CCc-EEEEecCCCeEEEEEc--cCCcceeeecccCCcceeEecccccCCCCeEEEEeCC
Confidence 111 222 234542 454 4445555666667654 4333 33333332222122 34455666555533
Q ss_pred CCCcEEEEEEcCCCc
Q 004735 421 VEPSSVAKVTLDDHK 435 (732)
Q Consensus 421 ~~~~~ly~~dl~~~~ 435 (732)
..++.+|+.++.
T Consensus 401 ---~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 401 ---GSVYVWDSSSGG 412 (456)
T ss_pred ---ceEEEEeCCccc
Confidence 357888887654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00021 Score=72.95 Aligned_cols=225 Identities=12% Similarity=0.076 Sum_probs=121.0
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
..+.++|++-..++|++++..+ +..+..... .....-.....+|. +++++ ..+++++++.+.
T Consensus 35 ~~~~L~w~DI~~~~i~r~~~~~--g~~~~~~~p----~~~~~~~~~d~~g~--Lv~~~----------~g~~~~~~~~~~ 96 (307)
T COG3386 35 DRGALLWVDILGGRIHRLDPET--GKKRVFPSP----GGFSSGALIDAGGR--LIACE----------HGVRLLDPDTGG 96 (307)
T ss_pred CCCEEEEEeCCCCeEEEecCCc--CceEEEECC----CCcccceeecCCCe--EEEEc----------cccEEEeccCCc
Confidence 3447899988889999999986 655555443 12223334555554 33333 456677766655
Q ss_pred cccc-EEcccCC-----CceeccccCCCCCeEEEEecc---C-CCCCCCccEEEEEEecCCCceeeeEEecCCCCCcccc
Q 004735 233 IQEP-KVLVSGS-----DFYAFPRMDPRGERMAWIEWH---H-PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (732)
Q Consensus 233 ~~~~-~~lt~~~-----~~~~~p~~SPDG~~la~~~~~---~-~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~ 302 (732)
. +.++... ...+.-...|||+ ++|.... . ...+-....||.+|.. |.. .+++.+.- ..
T Consensus 97 ---~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~--~~l~~~~~----~~ 164 (307)
T COG3386 97 ---KITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPD--GGV--VRLLDDDL----TI 164 (307)
T ss_pred ---eeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCC--CCE--EEeecCcE----Ee
Confidence 4 4443221 1233457789987 7776655 1 1111133478998864 333 34444422 44
Q ss_pred CcCceeCCCCcEEEEEeccCCeeeEEEEeccC--Ce---EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEE
Q 004735 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (732)
Q Consensus 303 ~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~--g~---~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~ 377 (732)
...++|||||+.+|.++. ....|++++.+. +. .+.......+...|.... . |.+..+|.+..
T Consensus 165 ~NGla~SpDg~tly~aDT--~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~------v-----DadG~lw~~a~ 231 (307)
T COG3386 165 PNGLAFSPDGKTLYVADT--PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA------V-----DADGNLWVAAV 231 (307)
T ss_pred cCceEECCCCCEEEEEeC--CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE------E-----eCCCCEEEecc
Confidence 568999999995555554 345677776642 21 111111111223343321 1 33333443433
Q ss_pred CCEEEEEEEECCCCceEEeccCCCceEEe--eE-eCCEEEEEEeCC
Q 004735 378 NGRSYLGILDDFGHSLSLLDIPFTDIDNI--TL-GNDCLFVEGASG 420 (732)
Q Consensus 378 ~g~~~ly~~~~~~~~~~~lt~~~~~v~~~--~~-~~~~~~~~~~~~ 420 (732)
.+...|-++++++.....+..+...+..+ -. +.+.+++.++..
T Consensus 232 ~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 232 WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 44457788899977777777775544444 22 234444444444
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.9e-05 Score=78.33 Aligned_cols=130 Identities=10% Similarity=-0.005 Sum_probs=83.8
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
.+++...+..+|+++.........+.|.. ..-.++..|||||++|+-.+-+ ..+-+++-.+|+ -
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgH----q~lVn~V~fSPd~r~IASaSFD---------kSVkLW~g~tGk---~ 401 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGH----QALVNHVSFSPDGRYIASASFD---------KSVKLWDGRTGK---F 401 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhch----hhheeeEEECCCccEEEEeecc---------cceeeeeCCCcc---h
Confidence 34565566789999875310223455654 4556888999999987654432 356666777776 2
Q ss_pred EEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 237 KVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 237 ~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
..... .-+.+++.+||.|.+.|+-.+ ..+.|-++++. +.++ ...+++.+ ..+..+.|||||+.+
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~S--------kDsTLKvw~V~-tkKl--~~DLpGh~----DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGS--------KDSTLKVWDVR-TKKL--KQDLPGHA----DEVFAVDWSPDGQRV 466 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcC--------CCceEEEEEee-eeee--cccCCCCC----ceEEEEEecCCCcee
Confidence 22222 234567889999988654333 34568899988 5544 34466654 457788999999855
Q ss_pred EE
Q 004735 316 FV 317 (732)
Q Consensus 316 ~~ 317 (732)
..
T Consensus 467 ~s 468 (480)
T KOG0271|consen 467 AS 468 (480)
T ss_pred ec
Confidence 43
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00034 Score=69.82 Aligned_cols=216 Identities=15% Similarity=0.112 Sum_probs=123.7
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC--CceeccccCCCCCeEEEEeccCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~--~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
|.-+++.+|+...++++..+.+ .-++++|..+++. ...+...+ -|+..-.|||||++|+-+..+...
T Consensus 6 RgH~~a~~p~~~~avafaRRPG-------~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~-- 74 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG-------TFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET-- 74 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC-------cEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC--
Confidence 4456778995555555544332 5788999999872 33444333 477788999999988766644433
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc------CC---------eeeEEEEeccC
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK------NG---------FWNLHKWIESN 334 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~------~g---------~~~l~~~d~~~ 334 (732)
....|-|+|.. ..++++..++... ..+.++.|.|||+.+++++-. .| ..+|..+|..+
T Consensus 75 -g~G~IgVyd~~--~~~~ri~E~~s~G----IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 75 -GRGVIGVYDAA--RGYRRIGEFPSHG----IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred -CcEEEEEEECc--CCcEEEeEecCCC----cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 56779999987 3344455555554 678899999999833344320 12 13466777777
Q ss_pred CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE-----EEEEEEECCCCceEEeccCC-------Cc
Q 004735 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR-----SYLGILDDFGHSLSLLDIPF-------TD 402 (732)
Q Consensus 335 g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~-----~~ly~~~~~~~~~~~lt~~~-------~~ 402 (732)
|++..-.....+.. ..+.+.+.+. .++.+++.....|. .-|++.+. ++..+.+..+. ..
T Consensus 148 G~ll~q~~Lp~~~~----~lSiRHLa~~----~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 148 GALLEQVELPPDLH----QLSIRHLAVD----GDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGY 218 (305)
T ss_pred CceeeeeecCcccc----ccceeeEEec----CCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCc
Confidence 76432211100000 1223444553 45556665554432 33555543 33355555432 33
Q ss_pred eEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 403 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 403 v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+.++ ...++.++.+++-.. ..+.++|.++++.
T Consensus 219 ~gSIa~~~~g~~ia~tsPrG--g~~~~~d~~tg~~ 251 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRG--GRVAVWDAATGRL 251 (305)
T ss_pred eEEEEEeCCCCEEEEECCCC--CEEEEEECCCCCE
Confidence 5555 344555555554333 2355668888875
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00015 Score=80.20 Aligned_cols=206 Identities=10% Similarity=0.013 Sum_probs=115.4
Q ss_pred CceeEEEC--CEEEEEeCCCCeEEEEeCCCCCCC-ce-------ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCC
Q 004735 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSS-PL-------PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDA 216 (732)
Q Consensus 147 ~~~~~~~~--~~i~f~~~~~~~l~~~d~~~~~~~-~~-------~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 216 (732)
+.++.+++ +.++++...++.|.++++.++ +. .. .+... ........|+|++..++++...+
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~-~~~~~~i~~p~~~L~gH----~~~V~sVaf~P~g~~iLaSgS~D---- 147 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHN-DESVKEIKDPQCILKGH----KKKISIIDWNPMNYYIMCSSGFD---- 147 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-CccccccccceEEeecC----CCcEEEEEECCCCCeEEEEEeCC----
Confidence 34445553 467777778888999998752 21 11 12211 33457788999999876654432
Q ss_pred CCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCC
Q 004735 217 LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 296 (732)
Q Consensus 217 ~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~ 296 (732)
..|.++|+.+++. ...+. ....+....|+|||+.|+... ....|.++|+. +++. +..+.+..
T Consensus 148 ----gtIrIWDl~tg~~--~~~i~-~~~~V~SlswspdG~lLat~s--------~D~~IrIwD~R-sg~~--i~tl~gH~ 209 (568)
T PTZ00420 148 ----SFVNIWDIENEKR--AFQIN-MPKKLSSLKWNIKGNLLSGTC--------VGKHMHIIDPR-KQEI--ASSFHIHD 209 (568)
T ss_pred ----CeEEEEECCCCcE--EEEEe-cCCcEEEEEECCCCCEEEEEe--------cCCEEEEEECC-CCcE--EEEEeccc
Confidence 5788889987761 22232 334566789999999887554 23458999998 6765 33344432
Q ss_pred CCccccC-cCc----eeCCCCcEEEEEe-ccCCeeeEEEEeccC-CeEEEecccccccC--CCceeecccceeeeeecCC
Q 004735 297 PTIVESP-TEP----KWSSKGELFFVTD-RKNGFWNLHKWIESN-NEVLAIYSLDAEFS--RPLWVFGINSYEIIQSHGE 367 (732)
Q Consensus 297 ~~~~~~~-~~~----~wspDg~l~~~~~-~~~g~~~l~~~d~~~-g~~~~l~~~~~~~~--~~~w~~~~~~~~~~~~~~~ 367 (732)
+.. ... .|++|++.++++. .+....+|.++|+.+ ++.......+.... .|.|.+ +
T Consensus 210 ----g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~------------~ 273 (568)
T PTZ00420 210 ----GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE------------S 273 (568)
T ss_pred ----CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC------------C
Confidence 211 122 2458887444433 312234677888774 33222222211111 123332 5
Q ss_pred CCEEEEEEEECCEEEEEEEECCCCceEEec
Q 004735 368 KNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 368 ~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
.+.+|++...++.-++|-+ ..+....|.
T Consensus 274 tg~l~lsGkGD~tIr~~e~--~~~~~~~l~ 301 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQH--SLGSIRKVN 301 (568)
T ss_pred CCCEEEEEECCCeEEEEEc--cCCcEEeec
Confidence 5666666666666666654 445555554
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00019 Score=71.85 Aligned_cols=188 Identities=13% Similarity=0.059 Sum_probs=101.2
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
+..+++....+........+++|+||+.++++..... ...||+...++. ...+..+. ....|.|+|||.
T Consensus 10 ~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~------~~~L~~~~~~~~----~~~~~~g~-~l~~PS~d~~g~ 78 (253)
T PF10647_consen 10 GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDG------GRSLYVGPAGGP----VRPVLTGG-SLTRPSWDPDGW 78 (253)
T ss_pred CceeECCCCcCcCCccccceEECCCCCeEEEEEEcCC------CCEEEEEcCCCc----ceeeccCC-ccccccccCCCC
Confidence 3445555432211235678899999999999982221 378999887654 34443333 456799999976
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEec--c
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE--S 333 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~--~ 333 (732)
+........ ...+.. +.. +|+.....+-.... . ..+..+.+||||. ++++... .+..+|++..+ +
T Consensus 79 -~W~v~~~~~-----~~~~~~-~~~-~g~~~~~~v~~~~~-~--~~I~~l~vSpDG~RvA~v~~~-~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 79 -VWTVDDGSG-----GVRVVR-DSA-SGTGEPVEVDWPGL-R--GRITALRVSPDGTRVAVVVED-GGGGRVYVAGVVRD 146 (253)
T ss_pred -EEEEEcCCC-----ceEEEE-ecC-CCcceeEEeccccc-C--CceEEEEECCCCcEEEEEEec-CCCCeEEEEEEEeC
Confidence 433432221 222222 322 34433233222211 0 2577899999999 8887765 44466664432 2
Q ss_pred -CCeEEEec-------ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC
Q 004735 334 -NNEVLAIY-------SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (732)
Q Consensus 334 -~g~~~~l~-------~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~ 400 (732)
.|..+.+. ..........|. ++..|++.....+......+..+++..+.++...
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~-------------~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~ 208 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWS-------------DDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVN 208 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeec-------------CCCEEEEEeCCCCCceeEEEEccCCcccccCCCC
Confidence 23222222 112233345565 4455555554444332225677788877775443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.5e-05 Score=77.66 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHH---CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHH----HHHHHHHh
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTS---RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCC----SCATFLVG 567 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~---~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~----~~i~~l~~ 567 (732)
++++|++.|.|+-. ..|......|.+ ..+.|+++.+.|........... .+......+|.+ +.++.+..
T Consensus 2 ~~li~~IPGNPGlv--~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~--~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGLV--EFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFS--PNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCChH--HHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccccc--CCCCccCHHHHHHHHHHHHHHHhh
Confidence 47899999987654 233344444543 47999999998765433220000 111112233333 33444444
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEeecCcC
Q 004735 568 SGKADEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVA 608 (732)
Q Consensus 568 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~p---~~~~a~v~~~~~~ 608 (732)
+......++.++|||.|+|+++.++. .+ ..++.++++.|..
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 32114579999999999999999998 66 6888888888753
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.8e-05 Score=78.07 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=101.7
Q ss_pred EEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCC
Q 004735 205 YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG 284 (732)
Q Consensus 205 l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g 284 (732)
|+++.+.. .+.|.++|.++.+. ...+..+...+....+||||++++..+ + ...|.++|+. ++
T Consensus 7 l~~V~~~~-------~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~yv~~-r-------dg~vsviD~~-~~ 68 (369)
T PF02239_consen 7 LFYVVERG-------SGSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLYVAN-R-------DGTVSVIDLA-TG 68 (369)
T ss_dssp EEEEEEGG-------GTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEEEEE-T-------TSEEEEEETT-SS
T ss_pred EEEEEecC-------CCEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEEEEc-C-------CCeEEEEECC-cc
Confidence 46665544 26899999998762 345544445566788999999876554 2 2359999998 67
Q ss_pred ceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE-ecccccccCCCceeecccceeeee
Q 004735 285 DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQ 363 (732)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~ 363 (732)
+. +..+.-. .....+++|+||+.+++++...+ .+..+|.++.+... |.........+. .-...+..++
T Consensus 69 ~~--v~~i~~G-----~~~~~i~~s~DG~~~~v~n~~~~--~v~v~D~~tle~v~~I~~~~~~~~~~~--~Rv~aIv~s~ 137 (369)
T PF02239_consen 69 KV--VATIKVG-----GNPRGIAVSPDGKYVYVANYEPG--TVSVIDAETLEPVKTIPTGGMPVDGPE--SRVAAIVASP 137 (369)
T ss_dssp SE--EEEEE-S-----SEEEEEEE--TTTEEEEEEEETT--EEEEEETTT--EEEEEE--EE-TTTS-----EEEEEE-S
T ss_pred cE--EEEEecC-----CCcceEEEcCCCCEEEEEecCCC--ceeEeccccccceeecccccccccccC--CCceeEEecC
Confidence 65 3333322 33567899999995566654233 57778988866543 322211110000 0000111121
Q ss_pred ecCCCCEEEEEEEECCEEEEEEEECCCCce---EEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 364 SHGEKNLIACSYRQNGRSYLGILDDFGHSL---SLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 364 ~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~---~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
....+++...+. .+|+++|....+. +.+..+..-......+++++++.+.... ..+-++|+++++.
T Consensus 138 ---~~~~fVv~lkd~--~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s--n~i~viD~~~~k~ 206 (369)
T PF02239_consen 138 ---GRPEFVVNLKDT--GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS--NKIAVIDTKTGKL 206 (369)
T ss_dssp ---SSSEEEEEETTT--TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG--TEEEEEETTTTEE
T ss_pred ---CCCEEEEEEccC--CeEEEEEeccccccceeeecccccccccccCcccceeeeccccc--ceeEEEeeccceE
Confidence 344455554433 3678888765432 2333332222233556666666655443 3788889887764
|
... |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=77.44 Aligned_cols=201 Identities=12% Similarity=0.044 Sum_probs=116.7
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
....-..||++|++++-.+.+. ..-||.+..++. ..-...|......+....||||.++|+-...++
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~-------Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e----- 291 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDS-------TAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE----- 291 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCc-------eEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchH-----
Confidence 4456678999999987665543 356666666543 111234444555667789999999997655332
Q ss_pred CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCC
Q 004735 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~ 349 (732)
.+++.|++ +|.. +...+..- + .++...+|-|||. ++.-+.+ ..++.+|.++.....-- + +..
T Consensus 292 ---~~~lwDv~-tgd~--~~~y~~~~-~--~S~~sc~W~pDg~~~V~Gs~d----r~i~~wdlDgn~~~~W~-g---vr~ 354 (519)
T KOG0293|consen 292 ---VLSLWDVD-TGDL--RHLYPSGL-G--FSVSSCAWCPDGFRFVTGSPD----RTIIMWDLDGNILGNWE-G---VRD 354 (519)
T ss_pred ---heeeccCC-cchh--hhhcccCc-C--CCcceeEEccCCceeEecCCC----CcEEEecCCcchhhccc-c---ccc
Confidence 27888888 7765 33333331 1 5778899999997 5433322 45788888765422111 0 011
Q ss_pred CceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEE
Q 004735 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 350 ~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
| -..++...+ ||+.++... .+ .+|..++..+...+-+-.....+..+ .+.+++++++.-. +.++.+
T Consensus 355 ~----~v~dlait~---Dgk~vl~v~-~d--~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~---~qei~L 421 (519)
T KOG0293|consen 355 P----KVHDLAITY---DGKYVLLVT-VD--KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ---DQEIHL 421 (519)
T ss_pred c----eeEEEEEcC---CCcEEEEEe-cc--cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc---cCeeEE
Confidence 1 122334443 677666554 33 44555566665555344445556666 3455555554432 356888
Q ss_pred EEcCCC
Q 004735 429 VTLDDH 434 (732)
Q Consensus 429 ~dl~~~ 434 (732)
+|++..
T Consensus 422 WDl~e~ 427 (519)
T KOG0293|consen 422 WDLEEN 427 (519)
T ss_pred eecchh
Confidence 888743
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00024 Score=77.89 Aligned_cols=158 Identities=10% Similarity=0.090 Sum_probs=94.5
Q ss_pred ceeEEEC--CEEEEEeCCCCeEEEEeCCCCCCC-------ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCC
Q 004735 148 GAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (732)
Q Consensus 148 ~~~~~~~--~~i~f~~~~~~~l~~~d~~~~~~~-------~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 218 (732)
.++.+++ +.++++...++.|.++++.++ +. ...|... ........|+|++..++++...+
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~-~~~~~~~~~l~~L~gH----~~~V~~l~f~P~~~~iLaSgs~D------ 147 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEE-GLTQNISDPIVHLQGH----TKKVGIVSFHPSAMNVLASAGAD------ 147 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCCC-ccccccCcceEEecCC----CCcEEEEEeCcCCCCEEEEEeCC------
Confidence 3445543 456677777888999998752 21 1122222 34456788999875445544322
Q ss_pred ceeEEEEEEcCCCCccccE-EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 219 STTEIVAIALNGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 219 ~~~~l~~~d~~~~~~~~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
..|.++|+.+++ .. .+......+....|+|||+.|+..+ ....|.++|+. +|+. +..+.+..
T Consensus 148 --gtVrIWDl~tg~---~~~~l~~h~~~V~sla~spdG~lLatgs--------~Dg~IrIwD~r-sg~~--v~tl~~H~- 210 (493)
T PTZ00421 148 --MVVNVWDVERGK---AVEVIKCHSDQITSLEWNLDGSLLCTTS--------KDKKLNIIDPR-DGTI--VSSVEAHA- 210 (493)
T ss_pred --CEEEEEECCCCe---EEEEEcCCCCceEEEEEECCCCEEEEec--------CCCEEEEEECC-CCcE--EEEEecCC-
Confidence 578889998876 33 3433445677789999999887655 23458999998 6654 33333332
Q ss_pred CccccCcCceeCCCCcEEEEEe-ccCCeeeEEEEeccCC
Q 004735 298 TIVESPTEPKWSSKGELFFVTD-RKNGFWNLHKWIESNN 335 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~l~~~~~-~~~g~~~l~~~d~~~g 335 (732)
. .......|.+++..+++.. .......|.++|+.+.
T Consensus 211 ~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 211 S--AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred C--CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 0 2234678999877443332 2122345777777653
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00026 Score=70.88 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=93.2
Q ss_pred eEEECCEEEEEe--CCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 150 FRIFGDTVIFSN--YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 150 ~~~~~~~i~f~~--~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.+.+++.++|+. .....||+.... +..+.+... ..+..|+|+++|..+++..... ...+++ +
T Consensus 31 vS~dg~~~A~v~~~~~~~~L~~~~~~---~~~~~~~~g-----~~l~~PS~d~~g~~W~v~~~~~-------~~~~~~-~ 94 (253)
T PF10647_consen 31 VSPDGSRVAAVSEGDGGRSLYVGPAG---GPVRPVLTG-----GSLTRPSWDPDGWVWTVDDGSG-------GVRVVR-D 94 (253)
T ss_pred ECCCCCeEEEEEEcCCCCEEEEEcCC---CcceeeccC-----CccccccccCCCCEEEEEcCCC-------ceEEEE-e
Confidence 344566788887 555689999876 444444322 3567899999977544333211 122222 3
Q ss_pred cCCCCccccEEcccC-CC-ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC--CCcee---e-eEEecCCCCCc
Q 004735 228 LNGQNIQEPKVLVSG-SD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVY---K-RVCVAGFDPTI 299 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~-~~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~--~g~~~---~-~~~~~~~~~~~ 299 (732)
..+++.. ...+.-. .. .+...++||||.++|++..+. ...+|++.-+.. +|... . ..+.....
T Consensus 95 ~~~g~~~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~-----~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~--- 165 (253)
T PF10647_consen 95 SASGTGE-PVEVDWPGLRGRITALRVSPDGTRVAVVVEDG-----GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL--- 165 (253)
T ss_pred cCCCcce-eEEecccccCCceEEEEECCCCcEEEEEEecC-----CCCeEEEEEEEeCCCCCcceeccceEeccccc---
Confidence 3333300 2223211 11 567789999999999998544 346688887652 23111 1 12222222
Q ss_pred cccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
..+..+.|.+|++|++.... .+......+..+++..+.+.
T Consensus 166 -~~v~~v~W~~~~~L~V~~~~-~~~~~~~~v~~dG~~~~~l~ 205 (253)
T PF10647_consen 166 -SDVTDVAWSDDSTLVVLGRS-AGGPVVRLVSVDGGPSTPLP 205 (253)
T ss_pred -CcceeeeecCCCEEEEEeCC-CCCceeEEEEccCCcccccC
Confidence 34568999999996666655 33221224667777666663
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00011 Score=68.09 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=80.7
Q ss_pred CCEEEEEcCCCCCc-cCCcccHHHHHHHHCCCEEEEEcCCCCC-CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 495 PPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGGST-GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 495 ~P~vl~~HGg~~~~-~~~~~~~~~~~l~~~G~~v~~~d~rG~~-g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
.-.|||+-|.+.+- .......+..++.+.+|..+.+..+.+. |+|..... .+.+|+..+++++...+.
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk--------~D~edl~~l~~Hi~~~~f-- 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLK--------DDVEDLKCLLEHIQLCGF-- 105 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccccccccccc--------ccHHHHHHHHHHhhccCc--
Confidence 35677776643332 2233445778889999999999987653 35544222 458999999998876643
Q ss_pred CCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcCCHHH
Q 004735 573 EKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVADLSM 612 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~d~~~ 612 (732)
..+|+++|||.|+.-.+.+++ .+..+.++|+.+|++|..+
T Consensus 106 St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrEY 148 (299)
T KOG4840|consen 106 STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDREY 148 (299)
T ss_pred ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhhh
Confidence 458999999999999998885 6788999999999998763
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0047 Score=61.62 Aligned_cols=241 Identities=12% Similarity=0.040 Sum_probs=129.1
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++.+...++.|.++..+++ +....+... ....--..|+|.+..+++-..+ ..+|.+.+..+.
T Consensus 119 tlLATGdmsG~v~v~~~stg-~~~~~~~~e----~~dieWl~WHp~a~illAG~~D---------GsvWmw~ip~~~--- 181 (399)
T KOG0296|consen 119 TLLATGDMSGKVLVFKVSTG-GEQWKLDQE----VEDIEWLKWHPRAHILLAGSTD---------GSVWMWQIPSQA--- 181 (399)
T ss_pred eEEEecCCCccEEEEEcccC-ceEEEeecc----cCceEEEEecccccEEEeecCC---------CcEEEEECCCcc---
Confidence 45556666788888888873 333444322 1122335699988876555442 588999888755
Q ss_pred cEEcccCCC-ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 236 PKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 236 ~~~lt~~~~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
..++..|.. ....=+|.||||+|+-.. ....|.++++. +|.. +..+...+ . ........+.+|.+
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy--------~dgti~~Wn~k-tg~p--~~~~~~~e-~--~~~~~~~~~~~~~~ 247 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGY--------DDGTIIVWNPK-TGQP--LHKITQAE-G--LELPCISLNLAGST 247 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEe--------cCceEEEEecC-CCce--eEEecccc-c--CcCCccccccccce
Confidence 556655543 233447999999997654 24458899998 7754 33333222 1 23344555666666
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
++..+. .+ ..+.++..+|+.............+.-......+.+++.. ..=.|.....-+|.-.|| |++...+|
T Consensus 248 ~~~g~~-e~--~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~lpL~A~G~vdG~i~iy--D~a~~~~R 321 (399)
T KOG0296|consen 248 LTKGNS-EG--VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKLPLAACGSVDGTIAIY--DLAASTLR 321 (399)
T ss_pred eEeccC-Cc--cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc-cccchhhcccccceEEEE--ecccchhh
Confidence 655554 33 2444555566655444220000000000001111111100 111233333445555555 77777777
Q ss_pred EeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 395 LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 395 ~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+-.....|..+.-.+...++.+... ..++.+|..+|..
T Consensus 322 ~~c~he~~V~~l~w~~t~~l~t~c~~---g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 322 HICEHEDGVTKLKWLNTDYLLTACAN---GKVRQWDARTGQL 360 (399)
T ss_pred eeccCCCceEEEEEcCcchheeeccC---ceEEeeeccccce
Confidence 76666666777732233444444322 3688888888874
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0015 Score=65.24 Aligned_cols=216 Identities=14% Similarity=0.038 Sum_probs=121.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++|.+....-++++|..++ .....+...++ .-.++...|||||++| |+.+++-... ...|-+.|... .
T Consensus 19 avafaRRPG~~~~v~D~~~g-~~~~~~~a~~g--RHFyGHg~fs~dG~~L-ytTEnd~~~g---~G~IgVyd~~~-~--- 87 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTG-QLLQRLWAPPG--RHFYGHGVFSPDGRLL-YTTENDYETG---RGVIGVYDAAR-G--- 87 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCC-ceeeEEcCCCC--CEEecCEEEcCCCCEE-EEeccccCCC---cEEEEEEECcC-C---
Confidence 56666655557899999883 33445554421 2445778999999985 5555443221 47888899883 2
Q ss_pred cEEcccCCCceec---cccCCCCCeEEEEec---cCCC-----C--CCCccEEEEEEecCCCceeeeEEecCCCCCcccc
Q 004735 236 PKVLVSGSDFYAF---PRMDPRGERMAWIEW---HHPN-----M--PWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (732)
Q Consensus 236 ~~~lt~~~~~~~~---p~~SPDG~~la~~~~---~~~~-----~--~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~ 302 (732)
.+++.+-+.+-.+ ..|.|||+.|+.... .++. + +--...|-.+|.. +|++.....++..... .+
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ll~q~~Lp~~~~~--lS 164 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGALLEQVELPPDLHQ--LS 164 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCceeeeeecCccccc--cc
Confidence 4445332222222 478999999976531 1111 0 0012346777777 8987555445433212 67
Q ss_pred CcCceeCCCCcEEEEEeccCCee-----eEEEEeccCCeEEEecccccccCCCcee---ecccceeeeeecCCCCEEEEE
Q 004735 303 PTEPKWSSKGELFFVTDRKNGFW-----NLHKWIESNNEVLAIYSLDAEFSRPLWV---FGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 303 ~~~~~wspDg~l~~~~~~~~g~~-----~l~~~d~~~g~~~~l~~~~~~~~~~~w~---~~~~~~~~~~~~~~~~~l~~~ 374 (732)
+..++|++||.++|-.+. +|.. -|.+.+. ++..+.+. .. ...|. .-.-++.+.. +++.++++
T Consensus 165 iRHLa~~~~G~V~~a~Q~-qg~~~~~~PLva~~~~-g~~~~~~~-~p----~~~~~~l~~Y~gSIa~~~---~g~~ia~t 234 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQY-QGDPGDAPPLVALHRR-GGALRLLP-AP----EEQWRRLNGYIGSIAADR---DGRLIAVT 234 (305)
T ss_pred eeeEEecCCCcEEEEEec-CCCCCccCCeEEEEcC-CCcceecc-CC----hHHHHhhCCceEEEEEeC---CCCEEEEE
Confidence 888999999986666655 4431 1333332 22233322 11 11121 1112334442 66678888
Q ss_pred EEECCEEEEEEEECCCCceEEec
Q 004735 375 YRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 375 s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
+-+.+...+| |.+++++....
T Consensus 235 sPrGg~~~~~--d~~tg~~~~~~ 255 (305)
T PF07433_consen 235 SPRGGRVAVW--DAATGRLLGSV 255 (305)
T ss_pred CCCCCEEEEE--ECCCCCEeecc
Confidence 8777766666 77788765443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0014 Score=78.82 Aligned_cols=254 Identities=12% Similarity=0.109 Sum_probs=134.0
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCC-CC-CC-----CCeE---eeceeecCCCCEEEEEEeccCCCCC
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITP-DY-GE-----PLVS---YADGIFDPRFNRYVTVREDRRQDAL 217 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~-~~-~~-----~~~~---~~~~~~spdG~~l~~~~~~~~~~~~ 217 (732)
..+...++.|++++...++|.++|+++ .....+.. +. +. .... -...+++++|+. +|+.+..
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~----- 644 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTE----- 644 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCC-----
Confidence 333334568888888888999999875 33333322 10 00 0011 245678898886 4555432
Q ss_pred CceeEEEEEEcCCCCccccEEcccC-C-------------Ccee---ccccCCCCCeEEEEeccCCCCCCCccEEEEEEe
Q 004735 218 NSTTEIVAIALNGQNIQEPKVLVSG-S-------------DFYA---FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 280 (732)
Q Consensus 218 ~~~~~l~~~d~~~~~~~~~~~lt~~-~-------------~~~~---~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~ 280 (732)
++.|.++|+.++. ++.+... . .... ..+++|++..|+... . ...+|+++|.
T Consensus 645 --n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad-~------~~~~I~v~d~ 712 (1057)
T PLN02919 645 --NHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM-A------GQHQIWEYNI 712 (1057)
T ss_pred --CceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE-C------CCCeEEEEEC
Confidence 2678889988776 5555321 0 0012 347899777775543 2 2455899988
Q ss_pred cCCCceeeeEEecCCC---------C--CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccc----
Q 004735 281 SENGDVYKRVCVAGFD---------P--TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---- 345 (732)
Q Consensus 281 ~~~g~~~~~~~~~~~~---------~--~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~---- 345 (732)
. +|... .+.+.. . .-...+..++++|||+.+|+++. +..+|.++|++++..+.+.....
T Consensus 713 ~-~g~v~---~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 713 S-DGVTR---VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred C-CCeEE---EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCc
Confidence 7 55442 111110 0 00023445789999984445554 45679999998876554432110
Q ss_pred ---ccC---CC---ceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccC-C-------------Cc
Q 004735 346 ---EFS---RP---LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP-F-------------TD 402 (732)
Q Consensus 346 ---~~~---~~---~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~-~-------------~~ 402 (732)
.+. .+ ........+.+.+ +| .+|++.. +...|.+++.+++.+..+... . ..
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~---dG-~LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAK---DG-QIYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeC---CC-cEEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 000 00 0001122334432 33 4555543 335577778888776654321 0 12
Q ss_pred eEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 403 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 403 v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
...+ ..+++++ |++.. ....|.++|+++++.
T Consensus 861 P~GIavd~dG~l-yVaDt--~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 861 PAGLALGENGRL-FVADT--NNSLIRYLDLNKGEA 892 (1057)
T ss_pred ceEEEEeCCCCE-EEEEC--CCCEEEEEECCCCcc
Confidence 2333 3445554 44432 234688888888764
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.6e-05 Score=75.67 Aligned_cols=225 Identities=10% Similarity=0.047 Sum_probs=129.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
.++.+..-.|.+-++.... ....+.-.+ +..+.....|+|. +..++-...+. .-.|| ++++..
T Consensus 188 ~~laT~swsG~~kvW~~~~--~~~~~~l~g---H~~~v~~~~fhP~~~~~~lat~s~Dg-------tvklw--~~~~e~- 252 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQ--CNLLQTLRG---HTSRVGAAVFHPVDSDLNLATASADG-------TVKLW--KLSQET- 252 (459)
T ss_pred CeEEEeecCCceeEeecCC--cceeEEEec---cccceeeEEEccCCCccceeeeccCC-------ceeee--ccCCCc-
Confidence 4444544556566666655 432222222 2456788889997 44433333322 23444 444432
Q ss_pred cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
....|+.....+...+|.|+|++|+-.+.|.. | .++|+. ++.. +....+.. ..+...+|-+||.
T Consensus 253 -~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t---W-----RlWD~~-tk~E--lL~QEGHs----~~v~~iaf~~DGS 316 (459)
T KOG0272|consen 253 -PLQDLEGHLARVSRVAFHPSGKFLGTASFDST---W-----RLWDLE-TKSE--LLLQEGHS----KGVFSIAFQPDGS 316 (459)
T ss_pred -chhhhhcchhhheeeeecCCCceeeecccccc---h-----hhcccc-cchh--hHhhcccc----cccceeEecCCCc
Confidence 14556655566778899999999988776653 2 344776 4432 44445555 7889999999999
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
|+.+..- ....+| +|+.+|....+..+ -.++-+..|+ .+++.+.+...++.-.||.+.... .
T Consensus 317 L~~tGGl-D~~~Rv--WDlRtgr~im~L~gH~k~I~~V~fs-------------PNGy~lATgs~Dnt~kVWDLR~r~-~ 379 (459)
T KOG0272|consen 317 LAATGGL-DSLGRV--WDLRTGRCIMFLAGHIKEILSVAFS-------------PNGYHLATGSSDNTCKVWDLRMRS-E 379 (459)
T ss_pred eeeccCc-cchhhe--eecccCcEEEEecccccceeeEeEC-------------CCceEEeecCCCCcEEEeeecccc-c
Confidence 7765433 333344 47777765544432 2222333444 455666677778888888665322 2
Q ss_pred eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEE
Q 004735 393 LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 393 ~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
+-.+.....-|+.+ ..++.+.++.+++.++...||.
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence 44444445556776 3333444455556665566665
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0001 Score=77.98 Aligned_cols=195 Identities=10% Similarity=-0.034 Sum_probs=99.7
Q ss_pred EEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++....+++|.++|.++ .+ ...+..+ ........++|||++ +|+..+. ..|.++|+.+++.
T Consensus 8 ~~V~~~~~~~v~viD~~t--~~~~~~i~~~----~~~h~~~~~s~Dgr~-~yv~~rd--------g~vsviD~~~~~~-- 70 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT--NKVVARIPTG----GAPHAGLKFSPDGRY-LYVANRD--------GTVSVIDLATGKV-- 70 (369)
T ss_dssp EEEEEGGGTEEEEEETTT---SEEEEEE-S----TTEEEEEE-TT-SSE-EEEEETT--------SEEEEEETTSSSE--
T ss_pred EEEEecCCCEEEEEECCC--CeEEEEEcCC----CCceeEEEecCCCCE-EEEEcCC--------CeEEEEECCcccE--
Confidence 344555678999999886 43 3444433 112455679999998 5555432 5799999998872
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCC---ccccCcCceeCCCC
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT---IVESPTEPKWSSKG 312 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~---~~~~~~~~~wspDg 312 (732)
+.++..+.. ..+.++||||++|+..... ...+.++|.+ +.+. +..++..... ....+..+.-+++.
T Consensus 71 v~~i~~G~~-~~~i~~s~DG~~~~v~n~~-------~~~v~v~D~~-tle~--v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 71 VATIKVGGN-PRGIAVSPDGKYVYVANYE-------PGTVSVIDAE-TLEP--VKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp EEEEE-SSE-EEEEEE--TTTEEEEEEEE-------TTEEEEEETT-T--E--EEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred EEEEecCCC-cceEEEcCCCCEEEEEecC-------CCceeEeccc-cccc--eeecccccccccccCCCceeEEecCCC
Confidence 445544443 3557899999988655422 2358899977 5554 3333221100 00112234456665
Q ss_pred cEEEEEeccCCeeeEEEEeccCCeEE---EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC
Q 004735 313 ELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (732)
Q Consensus 313 ~l~~~~~~~~g~~~l~~~d~~~g~~~---~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~ 389 (732)
..++.+.. +..+++.+|....+.. .+..+.. . ++..|.+ ++++++.....+ ..|.++|.+
T Consensus 140 ~~fVv~lk--d~~~I~vVdy~d~~~~~~~~i~~g~~-~---------~D~~~dp---dgry~~va~~~s--n~i~viD~~ 202 (369)
T PF02239_consen 140 PEFVVNLK--DTGEIWVVDYSDPKNLKVTTIKVGRF-P---------HDGGFDP---DGRYFLVAANGS--NKIAVIDTK 202 (369)
T ss_dssp SEEEEEET--TTTEEEEEETTTSSCEEEEEEE--TT-E---------EEEEE-T---TSSEEEEEEGGG--TEEEEEETT
T ss_pred CEEEEEEc--cCCeEEEEEeccccccceeeeccccc-c---------cccccCc---ccceeeeccccc--ceeEEEeec
Confidence 53333333 2336888886654322 2211110 0 1222322 666666654433 377788888
Q ss_pred CCceEEe
Q 004735 390 GHSLSLL 396 (732)
Q Consensus 390 ~~~~~~l 396 (732)
+++...+
T Consensus 203 ~~k~v~~ 209 (369)
T PF02239_consen 203 TGKLVAL 209 (369)
T ss_dssp TTEEEEE
T ss_pred cceEEEE
Confidence 8766543
|
... |
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.6e-05 Score=75.31 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=110.3
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHH-HCCCE----EEEEcCCCCCCCChhhH--------HhhccCCCc-----ccHHH
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWT-SRGWA----FVDVNYGGSTGYGREFR--------ERLLGRWGI-----VDVND 557 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~-~~G~~----v~~~d~rG~~g~g~~~~--------~~~~~~~~~-----~~~~D 557 (732)
-..||+||. +.....+..+++.+. +.|.+ ++.++..|.-.....+. .-... ... ....-
T Consensus 12 tPTifihG~--~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~-~n~~~~~~~qa~w 88 (255)
T PF06028_consen 12 TPTIFIHGY--GGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFE-DNRNANYKKQAKW 88 (255)
T ss_dssp EEEEEE--T--TGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEES-STT-CHHHHHHHH
T ss_pred CcEEEECCC--CCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEec-CCCcCCHHHHHHH
Confidence 456789997 455677888899887 66653 44444444211111110 00011 111 12444
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CC-----CcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCC
Q 004735 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR-----DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 631 (732)
Q Consensus 558 ~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p-----~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 631 (732)
+..++.+|.+++.+ +++-++||||||..++.++. +. ..+...|.+++.++-..............-..+-..
T Consensus 89 l~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~~gp~~~ 166 (255)
T PF06028_consen 89 LKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNKNGPKSM 166 (255)
T ss_dssp HHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CSTT-BSS-
T ss_pred HHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhcccCCccc
Confidence 66788888888765 59999999999999998876 21 146777777766553211100000000000000000
Q ss_pred hhhhhhcCcc--ccCCCCCCCEEEEEeC------CCCccChHHHHHHHHHHHhCCCCEEEEEeCC--CCccCCCcccHHH
Q 004735 632 EKDYYEKSPI--NFVDKFSCPIILFQGL------EDKVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKAENIKF 701 (732)
Q Consensus 632 ~~~~~~~sp~--~~~~~i~~P~Lii~G~------~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~~~~~~ 701 (732)
.+.|...-.. ..+ .-.+.+|-|.|. .|.+||...++.+...++......+-+++.| +.|.-.. ++ .+
T Consensus 167 ~~~y~~l~~~~~~~~-p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~Lh-eN-~~ 243 (255)
T PF06028_consen 167 TPMYQDLLKNRRKNF-PKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLH-EN-PQ 243 (255)
T ss_dssp -HHHHHHHHTHGGGS-TTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGG-CC-HH
T ss_pred CHHHHHHHHHHHhhC-CCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCC-CC-HH
Confidence 1122211111 111 113679999998 8899999999999888887767777777765 5786432 33 35
Q ss_pred HHHHHHHHH
Q 004735 702 TLEQQMVFF 710 (732)
Q Consensus 702 ~~~~~~~fl 710 (732)
+.+.+.+||
T Consensus 244 V~~~I~~FL 252 (255)
T PF06028_consen 244 VDKLIIQFL 252 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 556666665
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=69.69 Aligned_cols=151 Identities=12% Similarity=0.079 Sum_probs=97.0
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
++..+++...++.+.++|+.+ ++.++.-.+ +.......++|||.++|+--+. + ..|-+++.-++-
T Consensus 74 dg~~alS~swD~~lrlWDl~~--g~~t~~f~G---H~~dVlsva~s~dn~qivSGSr-D--------kTiklwnt~g~c- 138 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLAT--GESTRRFVG---HTKDVLSVAFSTDNRQIVSGSR-D--------KTIKLWNTLGVC- 138 (315)
T ss_pred CCceEEeccccceEEEEEecC--CcEEEEEEe---cCCceEEEEecCCCceeecCCC-c--------ceeeeeeecccE-
Confidence 346677777788999999998 665544433 2455677889999999644332 2 467777777654
Q ss_pred cccEEcccC--CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 234 QEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 234 ~~~~~lt~~--~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
.-.+.++ .+.+...+|||...-...++... ...+-+.|++ +-++ ...+.+.. +++..+..|||
T Consensus 139 --k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~------DktvKvWnl~-~~~l--~~~~~gh~----~~v~t~~vSpD 203 (315)
T KOG0279|consen 139 --KYTIHEDSHREWVSCVRFSPNESNPIIVSASW------DKTVKVWNLR-NCQL--RTTFIGHS----GYVNTVTVSPD 203 (315)
T ss_pred --EEEEecCCCcCcEEEEEEcCCCCCcEEEEccC------CceEEEEccC-Ccch--hhcccccc----ccEEEEEECCC
Confidence 3333333 57788899999854444444222 2337788887 4444 44455665 88899999999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeE
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
|.+...... .| .++++|++.++.
T Consensus 204 GslcasGgk-dg--~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 204 GSLCASGGK-DG--EAMLWDLNEGKN 226 (315)
T ss_pred CCEEecCCC-Cc--eEEEEEccCCce
Confidence 985444333 44 455667766554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0028 Score=70.23 Aligned_cols=214 Identities=13% Similarity=0.047 Sum_probs=110.8
Q ss_pred eEeeceeecCC-CCEEEEEEeccCCCCCCceeEEEEEEcCCCCc------cccEEcccCCCceeccccCCCCCeEEEEec
Q 004735 191 VSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNI------QEPKVLVSGSDFYAFPRMDPRGERMAWIEW 263 (732)
Q Consensus 191 ~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~------~~~~~lt~~~~~~~~p~~SPDG~~la~~~~ 263 (732)
....+.+|+|+ ++.|+.... + ..|.++|+.++.. .....+......+....|+|++..++....
T Consensus 75 ~~V~~lafsP~~~~lLASgS~-D--------gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSE-D--------LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeC-C--------CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 45677889997 565444433 2 4677778764320 001123333445677899999987754432
Q ss_pred cCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE-ecc
Q 004735 264 HHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYS 342 (732)
Q Consensus 264 ~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~ 342 (732)
. ...|.++|+. +++. ...+... ..+..+.|+|||+++..+.. .+ .|.++|+.+++... +..
T Consensus 146 ~-------DgtIrIWDl~-tg~~--~~~i~~~-----~~V~SlswspdG~lLat~s~-D~--~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 146 F-------DSFVNIWDIE-NEKR--AFQINMP-----KKLSSLKWNIKGNLLSGTCV-GK--HMHIIDPRKQEIASSFHI 207 (568)
T ss_pred C-------CCeEEEEECC-CCcE--EEEEecC-----CcEEEEEECCCCCEEEEEec-CC--EEEEEECCCCcEEEEEec
Confidence 2 2348899998 6653 2223222 44678899999995544443 33 46777888876432 221
Q ss_pred cccccC-CCceeecccceeeeeecCCCCEEEEEEEEC-CEEEEEEEECCC-Cc-eEEec--cCCCceEEeeEeCCEEEEE
Q 004735 343 LDAEFS-RPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDFG-HS-LSLLD--IPFTDIDNITLGNDCLFVE 416 (732)
Q Consensus 343 ~~~~~~-~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~-g~~~ly~~~~~~-~~-~~~lt--~~~~~v~~~~~~~~~~~~~ 416 (732)
...... ...|.. .|.+ +++.|+.+...+ ..+.|.++|+.. ++ +..+. .....+..+..++...+|+
T Consensus 208 H~g~~~s~~v~~~-----~fs~---d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 208 HDGGKNTKNIWID-----GLGG---DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred ccCCceeEEEEee-----eEcC---CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEE
Confidence 111110 111221 1111 555555544332 234566667663 22 22222 2223333443344344455
Q ss_pred EeCCCCCcEEEEEEcCCCcceeeee
Q 004735 417 GASGVEPSSVAKVTLDDHKLKAVDF 441 (732)
Q Consensus 417 ~~~~~~~~~ly~~dl~~~~~~~lt~ 441 (732)
+++.+ ..++.+++..+....|++
T Consensus 280 sGkGD--~tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 280 IGKGD--GNCRYYQHSLGSIRKVNE 302 (568)
T ss_pred EEECC--CeEEEEEccCCcEEeecc
Confidence 54443 346666666666666654
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.8e-05 Score=67.09 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=81.5
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhh
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 628 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (732)
|.....+|-.+.++..+..- .+.++|++||.|+.+++..+. ....+.++++++|..--....
T Consensus 38 w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~~-------------- 100 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPEI-------------- 100 (181)
T ss_pred CCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCcccccc--------------
Confidence 44445677777776655542 445999999999999999887 444899999999863211000
Q ss_pred cCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 629 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 629 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.+......+|.. ..++.-|.+++++.+|+.+++++++.+.+++.. .++....+||-
T Consensus 101 --~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHi 156 (181)
T COG3545 101 --RPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHI 156 (181)
T ss_pred --chhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheeccccccc
Confidence 011111122221 223456899999999999999999999999876 68888888994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.2e-05 Score=74.83 Aligned_cols=179 Identities=12% Similarity=0.085 Sum_probs=107.1
Q ss_pred CceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCC-------CCeEeeceeecCCCCE---------------
Q 004735 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE-------PLVSYADGIFDPRFNR--------------- 204 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~-------~~~~~~~~~~spdG~~--------------- 204 (732)
..+.-|.|+.++|+...+..|-+++...| .-.+.|....-. ...-....+|.|-|++
T Consensus 250 VTCvrwGG~gliySgS~DrtIkvw~a~dG-~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSGSQDRTIKVWRALDG-KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred eEEEEEcCCceEEecCCCceEEEEEccch-hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 45666677788889888887877777651 233444432100 0001122335555554
Q ss_pred ----------EEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccE
Q 004735 205 ----------YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (732)
Q Consensus 205 ----------l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~ 274 (732)
++--++ ...+|+++....+ +++.+++.....+++..|||||++||-.++|.+
T Consensus 329 ~~~~~~~~erlVSgsD---------d~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-------- 390 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSD---------DFTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDKS-------- 390 (480)
T ss_pred HHhhccCcceeEEecC---------CceEEEecccccc-cchhhhhchhhheeeEEECCCccEEEEeecccc--------
Confidence 222211 2678888765322 124566666667888999999999998886653
Q ss_pred EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecc-cccccCCCcee
Q 004735 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWV 353 (732)
Q Consensus 275 l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~ 353 (732)
+.+.+-. +|+. +..+.+.- ..+.+++||.|.+|++.... ...|-++++.+.+...=.+ ..-++....|+
T Consensus 391 VkLW~g~-tGk~--lasfRGHv----~~VYqvawsaDsRLlVS~Sk---DsTLKvw~V~tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 391 VKLWDGR-TGKF--LASFRGHV----AAVYQVAWSADSRLLVSGSK---DSTLKVWDVRTKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred eeeeeCC-Ccch--hhhhhhcc----ceeEEEEeccCccEEEEcCC---CceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence 4444555 7765 66666664 67889999999997766543 2446666676766543333 33344455676
Q ss_pred e
Q 004735 354 F 354 (732)
Q Consensus 354 ~ 354 (732)
+
T Consensus 461 p 461 (480)
T KOG0271|consen 461 P 461 (480)
T ss_pred C
Confidence 5
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0016 Score=78.43 Aligned_cols=222 Identities=14% Similarity=0.109 Sum_probs=118.5
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCC-CC-c------ccccccccCCceeEEECCEEEE
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-EY-A------VRTTAQEYGGGAFRIFGDTVIF 159 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~-~~-~------~~~~~~~~g~~~~~~~~~~i~f 159 (732)
..++++.+++ ++.+|+.+.. .+| +...+.. +.....+.. .. + ....+....+.++...++.|++
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~---n~r--I~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSN---HNR--IVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred CCCceEEEECCCCeEEEEECC---CCe--EEEEeCC--CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 4667899988 7889988763 344 4444443 122111111 00 0 0111111222233333556777
Q ss_pred EeCCCCeEEEEeCCCCCCCceecCCCC-------CC-C-----CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 160 SNYKDQRLYKHSIDSKDSSPLPITPDY-------GE-P-----LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 160 ~~~~~~~l~~~d~~~~~~~~~~lt~~~-------~~-~-----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
.+.....|.++|+.+ +..+.+.... +. . -..-.+.+++|++..|+.. ... .+.|+++
T Consensus 641 aDt~n~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa-d~~-------~~~I~v~ 710 (1057)
T PLN02919 641 ADTENHALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA-MAG-------QHQIWEY 710 (1057)
T ss_pred EeCCCceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE-ECC-------CCeEEEE
Confidence 766667888999876 5555443210 00 0 0011456899977664444 322 3689999
Q ss_pred EcCCCCccccEEcccCC---------------CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE
Q 004735 227 ALNGQNIQEPKVLVSGS---------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC 291 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~---------------~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~ 291 (732)
+..++. ...+.... ..-.+.+++|||++|+.... ...+|+++|++ +|......-
T Consensus 711 d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-------~n~~Irv~D~~-tg~~~~~~g 779 (1057)
T PLN02919 711 NISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-------ESSSIRALDLK-TGGSRLLAG 779 (1057)
T ss_pred ECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-------CCCeEEEEECC-CCcEEEEEe
Confidence 988765 43332110 01123578999998866542 23569999987 554311110
Q ss_pred -----------ecCCC-C---CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 292 -----------VAGFD-P---TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 292 -----------~~~~~-~---~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
+...+ . .....+..+.+++||++| +++. +..+|.++|++++....+.
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LY-VADs--~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIY-VADS--YNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEE-EEEC--CCCEEEEEECCCCeEEEEe
Confidence 00000 0 000134567789999754 5554 4567899999988877664
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.4e-05 Score=79.60 Aligned_cols=78 Identities=27% Similarity=0.411 Sum_probs=63.1
Q ss_pred hhhcCccccCCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--cccHHHHHHHHHHHHH
Q 004735 635 YYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AENIKFTLEQQMVFFA 711 (732)
Q Consensus 635 ~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~ 711 (732)
+...++...+.++. +|+|++||.+|..||...+.+++...+.. +.+..++++++|.... .....+.+..+.+||.
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~ 295 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLE 295 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHH
Confidence 45556666677777 79999999999999999999999988765 6688888999998653 2333488999999999
Q ss_pred HHh
Q 004735 712 RVV 714 (732)
Q Consensus 712 ~~l 714 (732)
+.+
T Consensus 296 ~~l 298 (299)
T COG1073 296 RHL 298 (299)
T ss_pred Hhc
Confidence 876
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=7e-05 Score=79.19 Aligned_cols=167 Identities=15% Similarity=0.180 Sum_probs=99.8
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHH-HHCC--CEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHh--c
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYW-TSRG--WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG--S 568 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l-~~~G--~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~--~ 568 (732)
..|++|++||.|.......+.+..+.. .-.| .-|..+|++-..| |..... ..+-.+.+..+... .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig-G~nI~h---------~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG-GANIKH---------AAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC-CcchHH---------HHHHHHHHhhhhhhhhh
Confidence 358999999998433333333333333 2234 3345666652111 111000 01223333332222 2
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCC
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDK 646 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 646 (732)
+......|+|+|.|+|+.++.++.. ....+.++|++.-..+-..- ++ ..+-..+-.
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdg------------------pr----girDE~Lld 302 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDG------------------PR----GIRDEALLD 302 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCc------------------cc----CCcchhhHh
Confidence 4455678999999999877777665 33446777766433221110 00 001112335
Q ss_pred CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004735 647 FSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
++.|+|++.|.+|..+++...+++.+++++ .++++++.+++|.+.-
T Consensus 303 mk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmai 348 (784)
T KOG3253|consen 303 MKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAI 348 (784)
T ss_pred cCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccC
Confidence 678999999999999999999999999987 6789999999998753
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.3e-05 Score=66.57 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh-hcchhhhhhhhhhcC-C
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA-ETHKFESRYIDNLVG-S 631 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~-~~~~~~~~~~~~~~~-~ 631 (732)
...+.+-++-++.+.. | ..++|+|-|.|||.+.+++. +. +++ |+++|..-+..... ....-+..|....+- +
T Consensus 42 p~~a~~ele~~i~~~~-~-~~p~ivGssLGGY~At~l~~~~G--ira-v~~NPav~P~e~l~gylg~~en~ytg~~y~le 116 (191)
T COG3150 42 PQQALKELEKAVQELG-D-ESPLIVGSSLGGYYATWLGFLCG--IRA-VVFNPAVRPYELLTGYLGRPENPYTGQEYVLE 116 (191)
T ss_pred HHHHHHHHHHHHHHcC-C-CCceEEeecchHHHHHHHHHHhC--Chh-hhcCCCcCchhhhhhhcCCCCCCCCcceEEee
Confidence 4455666666665532 2 34999999999999999987 44 344 44455443322211 100000011100000 0
Q ss_pred hhhhhhcCccccCCCCCCC-EEEE-EeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 632 EKDYYEKSPINFVDKFSCP-IILF-QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 632 ~~~~~~~sp~~~~~~i~~P-~Lii-~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
+.-.... -......++.| .+++ .-+.|.+....++.+.+... ...+..|+.|.|. .....++.++.|
T Consensus 117 ~~hI~~l-~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~---~f~~~l~~i~aF 185 (191)
T COG3150 117 SRHIATL-CVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFK---GFSRHLQRIKAF 185 (191)
T ss_pred hhhHHHH-HHhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCcccc---chHHhHHHHHHH
Confidence 0000000 11223344444 4444 44448887777776666544 4567788999985 556778888887
Q ss_pred HH
Q 004735 710 FA 711 (732)
Q Consensus 710 l~ 711 (732)
..
T Consensus 186 ~g 187 (191)
T COG3150 186 KG 187 (191)
T ss_pred hc
Confidence 53
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0047 Score=59.17 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=113.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.|+.+-..+..|-+++..++ ....-.+..++...-.....+|||.|++|+..+-+. ...||. -..+++.-
T Consensus 28 ~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~-------t~~Iw~--k~~~efec 97 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA-------TVVIWK--KEDGEFEC 97 (312)
T ss_pred eEEEeecCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEeeccc-------eEEEee--cCCCceeE
Confidence 36666666666777776531 111111111112344567889999999876654432 233433 22333211
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
+..|.....-+-..+||++|++||-.+.+ ..+|+..++.+++..-..++.+.- +.+..+.|-|--.|+
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRD--------KSVWiWe~deddEfec~aVL~~Ht----qDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRD--------KSVWIWEIDEDDEFECIAVLQEHT----QDVKHVIWHPTEDLL 165 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCC--------CeEEEEEecCCCcEEEEeeecccc----ccccEEEEcCCccee
Confidence 22222222334567899999999987733 338888887567776666777665 678899999965588
Q ss_pred EEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 316 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
|.... .+...+|+-+. .+....+...+.. ..-.|+. .|-+ .|.+++-. ..++...||++
T Consensus 166 ~S~SY-DnTIk~~~~~~-dddW~c~~tl~g~-~~TVW~~-----~F~~---~G~rl~s~-sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 166 FSCSY-DNTIKVYRDED-DDDWECVQTLDGH-ENTVWSL-----AFDN---IGSRLVSC-SDDGTVSIWRL 224 (312)
T ss_pred EEecc-CCeEEEEeecC-CCCeeEEEEecCc-cceEEEE-----EecC---CCceEEEe-cCCcceEeeee
Confidence 88877 66777887664 4433322211111 2256764 3432 45566544 45677788873
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00093 Score=72.43 Aligned_cols=191 Identities=15% Similarity=0.108 Sum_probs=115.1
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE-CCEEEEEeCCCCeE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GDTVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~-~~~i~f~~~~~~~l 167 (732)
+...+..+| |+.+.- ..++|+..+|-...+ ---++-. -|..+...+.+. .+..+++...+|.+
T Consensus 352 ~i~~l~YSpDgq~iaT----G~eDgKVKvWn~~Sg----fC~vTFt-------eHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIAT----GAEDGKVKVWNTQSG----FCFVTFT-------EHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred ceeeEEECCCCcEEEe----ccCCCcEEEEeccCc----eEEEEec-------cCCCceEEEEEEecCCEEEEeecCCeE
Confidence 456777777 665543 124566555543211 0011100 022234445544 33677788889999
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC-CCce
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-SDFY 246 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~-~~~~ 246 (732)
-.+|+... ..-|..|.. ...++...+.+|.|..|.+-..+ ..+|++++..+|+ ..-+..| ++.+
T Consensus 417 RAwDlkRY-rNfRTft~P---~p~QfscvavD~sGelV~AG~~d--------~F~IfvWS~qTGq---llDiLsGHEgPV 481 (893)
T KOG0291|consen 417 RAWDLKRY-RNFRTFTSP---EPIQFSCVAVDPSGELVCAGAQD--------SFEIFVWSVQTGQ---LLDILSGHEGPV 481 (893)
T ss_pred Eeeeeccc-ceeeeecCC---CceeeeEEEEcCCCCEEEeeccc--------eEEEEEEEeecCe---eeehhcCCCCcc
Confidence 99999752 345566654 25677888889999864433332 3899999999998 5544444 4556
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEec-CCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCe
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 324 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~ 324 (732)
....|||+|..||-.+||. . +.++|+- ..|+...+.+. ..+..+.++|||+ |.+.+-+ |+
T Consensus 482 s~l~f~~~~~~LaS~SWDk------T--VRiW~if~s~~~vEtl~i~--------sdvl~vsfrPdG~elaVaTld--gq 543 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDK------T--VRIWDIFSSSGTVETLEIR--------SDVLAVSFRPDGKELAVATLD--GQ 543 (893)
T ss_pred eeeEEccccCeEEeccccc------e--EEEEEeeccCceeeeEeec--------cceeEEEEcCCCCeEEEEEec--ce
Confidence 6778999999998888765 2 4444443 13444333322 2245789999999 8776654 54
Q ss_pred eeEE
Q 004735 325 WNLH 328 (732)
Q Consensus 325 ~~l~ 328 (732)
..+|
T Consensus 544 Itf~ 547 (893)
T KOG0291|consen 544 ITFF 547 (893)
T ss_pred EEEE
Confidence 4443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0066 Score=59.52 Aligned_cols=249 Identities=14% Similarity=0.081 Sum_probs=129.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCc--eeEEECCEEEEEeC-CC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG--AFRIFGDTVIFSNY-KD 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~--~~~~~~~~i~f~~~-~~ 164 (732)
..+.++.+++ |..+.-.. ++...+||-. .+| .....+.. ..||.. .|......++.+.. .+
T Consensus 15 ~~i~sl~fs~~G~~litss----~dDsl~LYd~--~~g-~~~~ti~s--------kkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSS----EDDSLRLYDS--LSG-KQVKTINS--------KKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecCCCCEEEEec----CCCeEEEEEc--CCC-ceeeEeec--------ccccccEEEEecCCceEEEccCCCC
Confidence 4667888887 66555422 2234444443 322 33222222 234543 34444455665543 34
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
..|-.+++.+ .+--+.-.+ +..++...+.+|-+...+-.+.+ ..|..+|+...+ ..-+..-..
T Consensus 80 ~tIryLsl~d--NkylRYF~G---H~~~V~sL~~sP~~d~FlS~S~D---------~tvrLWDlR~~~---cqg~l~~~~ 142 (311)
T KOG1446|consen 80 DTIRYLSLHD--NKYLRYFPG---HKKRVNSLSVSPKDDTFLSSSLD---------KTVRLWDLRVKK---CQGLLNLSG 142 (311)
T ss_pred CceEEEEeec--CceEEEcCC---CCceEEEEEecCCCCeEEecccC---------CeEEeeEecCCC---CceEEecCC
Confidence 5788888876 443333333 36788889999987643322221 467788888655 333321111
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC--CCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 321 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~--~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~ 321 (732)
-.-++++|.|-.+|.. .+ ...|.++|+.. .|-.....+..+.. .....+.|||||+ |+..++.
T Consensus 143 -~pi~AfDp~GLifA~~--~~------~~~IkLyD~Rs~dkgPF~tf~i~~~~~----~ew~~l~FS~dGK~iLlsT~~- 208 (311)
T KOG1446|consen 143 -RPIAAFDPEGLIFALA--NG------SELIKLYDLRSFDKGPFTTFSITDNDE----AEWTDLEFSPDGKSILLSTNA- 208 (311)
T ss_pred -CcceeECCCCcEEEEe--cC------CCeEEEEEecccCCCCceeEccCCCCc----cceeeeEEcCCCCEEEEEeCC-
Confidence 1225789999544433 22 22588888762 23332222221222 3346789999999 6655443
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
..++.+|.=+|....-..+....... + -...|. .+..+++....+|.-++|.+ ++|......
T Consensus 209 ---s~~~~lDAf~G~~~~tfs~~~~~~~~---~--~~a~ft----Pds~Fvl~gs~dg~i~vw~~--~tg~~v~~~ 270 (311)
T KOG1446|consen 209 ---SFIYLLDAFDGTVKSTFSGYPNAGNL---P--LSATFT----PDSKFVLSGSDDGTIHVWNL--ETGKKVAVL 270 (311)
T ss_pred ---CcEEEEEccCCcEeeeEeeccCCCCc---c--eeEEEC----CCCcEEEEecCCCcEEEEEc--CCCcEeeEe
Confidence 34777887777644322221111100 0 112333 34456667777888888865 566544333
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00062 Score=74.71 Aligned_cols=162 Identities=14% Similarity=0.164 Sum_probs=98.9
Q ss_pred cCCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 145 YGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 145 ~g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
.++..+.++.+ ..+.....+..|.++|+..+....+.+... .......+|+|+|+.|+..+.+ ..+
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH----~~~v~~~~f~p~g~~i~Sgs~D---------~tv 270 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH----STYVTSVAFSPDGNLLVSGSDD---------GTV 270 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC----CCceEEEEecCCCCEEEEecCC---------CcE
Confidence 34444555444 355566677789999994310234455443 3455778899999765544442 478
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc-c
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE-S 302 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~-~ 302 (732)
.++|+.+++. .+.|....+.+....|+|||+.|+-.+. ...|.++|+. +|...-...+.+.. . . .
T Consensus 271 riWd~~~~~~--~~~l~~hs~~is~~~f~~d~~~l~s~s~--------d~~i~vwd~~-~~~~~~~~~~~~~~-~--~~~ 336 (456)
T KOG0266|consen 271 RIWDVRTGEC--VRKLKGHSDGISGLAFSPDGNLLVSASY--------DGTIRVWDLE-TGSKLCLKLLSGAE-N--SAP 336 (456)
T ss_pred EEEeccCCeE--EEeeeccCCceEEEEECCCCCEEEEcCC--------CccEEEEECC-CCceeeeecccCCC-C--CCc
Confidence 8889988761 3445455567778899999998876542 2348999998 67632123333332 1 1 3
Q ss_pred CcCceeCCCCcEEEEEeccCCeeeEEEEeccCCe
Q 004735 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 303 ~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
+....|+|+|+.+++... .+...+ +|+..+.
T Consensus 337 ~~~~~fsp~~~~ll~~~~-d~~~~~--w~l~~~~ 367 (456)
T KOG0266|consen 337 VTSVQFSPNGKYLLSASL-DRTLKL--WDLRSGK 367 (456)
T ss_pred eeEEEECCCCcEEEEecC-CCeEEE--EEccCCc
Confidence 577889999984444433 344444 4555544
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.3e-05 Score=76.24 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=61.5
Q ss_pred HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-
Q 004735 515 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA- 593 (732)
Q Consensus 515 ~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~- 593 (732)
..+..+.++|..|+.++.++ +..+.. ..++.....+++..+++.+++... .++|-++|+|.||.++..+++
T Consensus 130 s~V~~l~~~g~~vfvIsw~n-Pd~~~~-----~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRN-PDASLA-----AKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred cHHHHHHHcCCceEEEeccC-chHhhh-----hccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHh
Confidence 47889999999999999864 221111 111111224667788888887643 368999999999999998888
Q ss_pred CCCc-ceEEEeecCcCCH
Q 004735 594 FRDT-FKAGASLYGVADL 610 (732)
Q Consensus 594 ~p~~-~~a~v~~~~~~d~ 610 (732)
++.+ ++.+..+....|+
T Consensus 202 ~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 202 MAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhcccccceeeecchhh
Confidence 6666 8877766655544
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0026 Score=60.91 Aligned_cols=166 Identities=10% Similarity=0.082 Sum_probs=99.8
Q ss_pred eEeeceeecCC-CCEEEEEEeccCCCCCCceeEEEEEEcCCCC-ccccEEcccC-CCceeccccCCCCCeEEEEeccCCC
Q 004735 191 VSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPN 267 (732)
Q Consensus 191 ~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~ 267 (732)
.|....+|+|- |. |+++.... ..|-+++..++. .+-.+.|..+ ...+...+|||.|+.||-.+++..
T Consensus 15 ~r~W~~awhp~~g~-ilAscg~D--------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t- 84 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGV-ILASCGTD--------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT- 84 (312)
T ss_pred CcEEEEEeccCCce-EEEeecCC--------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce-
Confidence 46778889997 66 56665533 355666665322 1001122222 234567899999999998885542
Q ss_pred CCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEE---Eecccc
Q 004735 268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLD 344 (732)
Q Consensus 268 ~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~---~l~~~~ 344 (732)
..++.-. +++...+..+.+.+ .-+..++||++|+++.+..+ ...--||.++ ++++.. .|.+..
T Consensus 85 -------~~Iw~k~-~~efecv~~lEGHE----nEVK~Vaws~sG~~LATCSR-DKSVWiWe~d-eddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 85 -------VVIWKKE-DGEFECVATLEGHE----NEVKCVAWSASGNYLATCSR-DKSVWIWEID-EDDEFECIAVLQEHT 150 (312)
T ss_pred -------EEEeecC-CCceeEEeeeeccc----cceeEEEEcCCCCEEEEeeC-CCeEEEEEec-CCCcEEEEeeecccc
Confidence 3333323 67777677788876 66788999999995445544 2222344444 233433 233444
Q ss_pred cccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 345 ~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
.++..-.|.| ..-|+++..-+..-.+|+-.. +..+.
T Consensus 151 qDVK~V~WHP-------------t~dlL~S~SYDnTIk~~~~~~-dddW~ 186 (312)
T KOG0645|consen 151 QDVKHVIWHP-------------TEDLLFSCSYDNTIKVYRDED-DDDWE 186 (312)
T ss_pred ccccEEEEcC-------------CcceeEEeccCCeEEEEeecC-CCCee
Confidence 5556666764 345778887888888887654 44443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0067 Score=66.07 Aligned_cols=218 Identities=13% Similarity=0.053 Sum_probs=131.9
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
+|++|+|-...-++|.+++..+ +.-.+... .+-.+.....+||||++|+.-.++ ..+-++|..+|-
T Consensus 318 tGDWiA~g~~klgQLlVweWqs---EsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eD---------gKVKvWn~~Sgf 383 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQS---ESYVLKQQ--GHSDRITSLAYSPDGQLIATGAED---------GKVKVWNTQSGF 383 (893)
T ss_pred cCCEEEEcCCccceEEEEEeec---cceeeecc--ccccceeeEEECCCCcEEEeccCC---------CcEEEEeccCce
Confidence 4888888877777898888874 22222211 013456778899999987665553 466777877664
Q ss_pred ccccEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 233 IQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
... .++....+....|+.+|+.|+-.+.| +.+..+|+. .. ++.+.+....| .....++-.|-
T Consensus 384 ---C~vTFteHts~Vt~v~f~~~g~~llssSLD--------GtVRAwDlk-RY--rNfRTft~P~p---~QfscvavD~s 446 (893)
T KOG0291|consen 384 ---CFVTFTEHTSGVTAVQFTARGNVLLSSSLD--------GTVRAWDLK-RY--RNFRTFTSPEP---IQFSCVAVDPS 446 (893)
T ss_pred ---EEEEeccCCCceEEEEEEecCCEEEEeecC--------CeEEeeeec-cc--ceeeeecCCCc---eeeeEEEEcCC
Confidence 322 23444456778999999988666533 347788887 34 33455555432 23344555566
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 390 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~ 390 (732)
|.|++... .+...|++++.++|+...+..+ ++.+....+++ .+. ++++..-+..-++|-+=-..
T Consensus 447 GelV~AG~--~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~------------~~~-~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 447 GELVCAGA--QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP------------DGS-LLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred CCEEEeec--cceEEEEEEEeecCeeeehhcCCCCcceeeEEcc------------ccC-eEEeccccceEEEEEeeccC
Confidence 77766554 4778999999999998887744 32332222332 555 44455556667777665555
Q ss_pred CceEEeccCCCceEEe--eEeCCEEEEEE
Q 004735 391 HSLSLLDIPFTDIDNI--TLGNDCLFVEG 417 (732)
Q Consensus 391 ~~~~~lt~~~~~v~~~--~~~~~~~~~~~ 417 (732)
++.+.|.-.. ++..+ .++++.+.+.+
T Consensus 512 ~~vEtl~i~s-dvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 512 GTVETLEIRS-DVLAVSFRPDGKELAVAT 539 (893)
T ss_pred ceeeeEeecc-ceeEEEEcCCCCeEEEEE
Confidence 5666665432 34444 34455554433
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0036 Score=63.42 Aligned_cols=237 Identities=11% Similarity=-0.008 Sum_probs=112.0
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEecc-CCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
+++|++|.++ ++..=..+ .-....+..||||+.++....-- +..-.....-|-++|..+-.......|...+
T Consensus 17 ~rv~viD~d~--~k~lGmi~-----~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADS--GKLLGMID-----TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTT--TEEEEEEE-----EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCC--CcEEEEee-----cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 4789999775 43221111 11235577999999965432210 0000011356667888875411122343321
Q ss_pred C-----ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEE
Q 004735 244 D-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (732)
Q Consensus 244 ~-----~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~ 318 (732)
. ......+|+|||++++..... .+.+-|+|++ .+++......++.. .-.-+.+++ +. ..
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~TP------a~SVtVVDl~-~~kvv~ei~~PGC~-------~iyP~~~~~-F~-~l 153 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFTP------ATSVTVVDLA-AKKVVGEIDTPGCW-------LIYPSGNRG-FS-ML 153 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEESS------SEEEEEEETT-TTEEEEEEEGTSEE-------EEEEEETTE-EE-EE
T ss_pred hheecccccceEEccCCcEEEEEccCC------CCeEEEEECC-CCceeeeecCCCEE-------EEEecCCCc-eE-EE
Confidence 1 223457899999987665332 4669999998 67663322233321 111122222 33 22
Q ss_pred eccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEe--
Q 004735 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL-- 396 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~l-- 396 (732)
.. .|.-.-+.+|.++...+..++.......|.+.. ..+.. +++.++|.+.. ..||.+++.+...+..
T Consensus 154 C~-DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~----~~~~~---~~~~~~F~Sy~---G~v~~~dlsg~~~~~~~~ 222 (342)
T PF06433_consen 154 CG-DGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH----PAYSR---DGGRLYFVSYE---GNVYSADLSGDSAKFGKP 222 (342)
T ss_dssp ET-TSCEEEEEETSTSSEEEEEEEESSTTTS-B-S------EEET---TTTEEEEEBTT---SEEEEEEETTSSEEEEEE
T ss_pred ec-CCceEEEEECCCCCEeEeeccccCCCCcccccc----cceEC---CCCeEEEEecC---CEEEEEeccCCcccccCc
Confidence 33 354444455554444333221111111222211 11111 55677776532 3678888877654432
Q ss_pred ----cc----CC-----CceEEeeEeCCEEEEEEeCC------CCCcEEEEEEcCCCc
Q 004735 397 ----DI----PF-----TDIDNITLGNDCLFVEGASG------VEPSSVAKVTLDDHK 435 (732)
Q Consensus 397 ----t~----~~-----~~v~~~~~~~~~~~~~~~~~------~~~~~ly~~dl~~~~ 435 (732)
+. .. |.+..+....+++++..-.. +...+||++|+++++
T Consensus 223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 11 12 22333344566777655321 222459999999876
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0016 Score=62.99 Aligned_cols=217 Identities=18% Similarity=0.142 Sum_probs=120.1
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc--CCCceeccccCCCCCeEEEEeccCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
.+..+..++|--.+-+++..+.+ +--+++|..+.+. +..+.. +.-|+..=.|||||++||-+..+.+.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPG-------tf~~vfD~~~~~~--pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~- 137 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPG-------TFAMVFDPNGAQE--PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP- 137 (366)
T ss_pred cccCCeecCCCCcceEEEEecCC-------ceEEEECCCCCcC--cEEEecccCceeecccccCCCCcEEEeecCCCCC-
Confidence 34467788886655444443332 4667889887651 444443 34477788999999988776655433
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc------CC---------eeeEEEEecc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK------NG---------FWNLHKWIES 333 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~------~g---------~~~l~~~d~~ 333 (732)
+..-|-++|.. .+ ..++-.+.... ....++.|.+||+++...+.. -| ...|..+|..
T Consensus 138 --~rGViGvYd~r-~~-fqrvgE~~t~G----iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 138 --NRGVIGVYDAR-EG-FQRVGEFSTHG----IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred --CCceEEEEecc-cc-cceecccccCC----cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 46678899876 22 32233334443 667889999999955555430 11 1235566655
Q ss_pred CCeEE-Eec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE----EEEEEEECCCCceEEeccCCC------
Q 004735 334 NNEVL-AIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR----SYLGILDDFGHSLSLLDIPFT------ 401 (732)
Q Consensus 334 ~g~~~-~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~----~~ly~~~~~~~~~~~lt~~~~------ 401 (732)
+|+.. +.+ +. . .-....+.+..- .++.++|...-.|. .-|.-.-..++.++.+..+..
T Consensus 210 tG~liekh~Lp~--~----l~~lSiRHld~g----~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 210 TGNLIEKHTLPA--S----LRQLSIRHLDIG----RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred ccchhhhccCch--h----hhhcceeeeeeC----CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 55421 111 11 0 001122223222 56677777654443 335555566666776665532
Q ss_pred -ceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 402 -DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 402 -~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
.+.++ ......++..++-.. ...+.+|.++|.+.
T Consensus 280 nYigsiA~n~~~glV~lTSP~G--N~~vi~da~tG~vv 315 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRG--NRAVIWDAATGAVV 315 (366)
T ss_pred hhhhheeecccCCeEEEecCCC--CeEEEEEcCCCcEE
Confidence 23333 233345555554332 34677889999863
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.4e-05 Score=63.53 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=46.9
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
|.++.+..|.|++ . ++.+|+++||. ......+..+++.|+++||.|+++|+||.+.+
T Consensus 1 G~~L~~~~w~p~~-------~-~k~~v~i~HG~--~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S 57 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-------P-PKAVVVIVHGF--GEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRS 57 (79)
T ss_pred CcEEEEEEecCCC-------C-CCEEEEEeCCc--HHHHHHHHHHHHHHHhCCCEEEEECCCcCCCC
Confidence 5678888899975 2 67899999997 44455678899999999999999999986654
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00076 Score=69.39 Aligned_cols=214 Identities=12% Similarity=0.086 Sum_probs=124.8
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC-CcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
.-|.+++.. ++.++-+ +|.|.. .+...-+||++||.+..... .....+.+.|.+.|++.+.+..+.-...
T Consensus 61 ~~e~~~L~~--~~~~fla-L~~~~~------~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~ 131 (310)
T PF12048_consen 61 ADEVQWLQA--GEERFLA-LWRPAN------SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPP 131 (310)
T ss_pred HhhcEEeec--CCEEEEE-EEeccc------CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccc
Confidence 345566665 4556654 456654 25567899999996444332 3345678889999999999876541100
Q ss_pred ---------------Chhh--HH------------hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHH
Q 004735 539 ---------------GREF--RE------------RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589 (732)
Q Consensus 539 ---------------g~~~--~~------------~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~ 589 (732)
+..- .. .....+-.....-+.+++.++.+++ ..+|+|+||+.|+++++
T Consensus 132 ~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~ 208 (310)
T PF12048_consen 132 ASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAA 208 (310)
T ss_pred cCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHH
Confidence 0000 00 0000000011334556667776664 34599999999999999
Q ss_pred HHHh--CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHH
Q 004735 590 AALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA 667 (732)
Q Consensus 590 ~~~~--~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (732)
.++. .+..+.+.|++++........ ..-...+.+++.|+|=|++.+... ....+
T Consensus 209 ~~la~~~~~~~daLV~I~a~~p~~~~n-----------------------~~l~~~la~l~iPvLDi~~~~~~~-~~~~a 264 (310)
T PF12048_consen 209 RYLAEKPPPMPDALVLINAYWPQPDRN-----------------------PALAEQLAQLKIPVLDIYSADNPA-SQQTA 264 (310)
T ss_pred HHHhcCCCcccCeEEEEeCCCCcchhh-----------------------hhHHHHhhccCCCEEEEecCCChH-HHHHH
Confidence 9988 444588999998865432210 011123556789999999887332 22222
Q ss_pred HHHHHHH-HhC-CCCEEEEEeCCCCccCCCcccHHH-HHHHHHHHHHHH
Q 004735 668 RKIYKAL-KEN-GLPVALVEYEGEQHGFRKAENIKF-TLEQQMVFFARV 713 (732)
Q Consensus 668 ~~~~~~l-~~~-g~~~~~~~~~~~gH~~~~~~~~~~-~~~~~~~fl~~~ 713 (732)
.....+ +++ ....+-+.+.+..|... ...+ ..++|..|++++
T Consensus 265 -~~R~~~a~r~~~~~YrQ~~L~~~~~~~~---~~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 265 -KQRKQAAKRNKKPDYRQIQLPGLPDNPS---GWQEQLLRRIRGWLKRH 309 (310)
T ss_pred -HHHHHHHHhccCCCceeEecCCCCCChh---hHHHHHHHHHHHHHHhh
Confidence 222222 222 23456666677666542 2233 888899998875
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0054 Score=59.40 Aligned_cols=238 Identities=12% Similarity=0.057 Sum_probs=136.6
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
++.|+.| +.+++...++.|.++|.-+. .+...++-. ..-....+|||.|++|++-.-+. .-.||-+.
T Consensus 60 ~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~----s~WVMtCA~sPSg~~VAcGGLdN-------~Csiy~ls 127 (343)
T KOG0286|consen 60 AMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLP----SSWVMTCAYSPSGNFVACGGLDN-------KCSIYPLS 127 (343)
T ss_pred eeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecC----ceeEEEEEECCCCCeEEecCcCc-------eeEEEecc
Confidence 3444444 56677778899999998762 344444432 33445678999999987754322 35666555
Q ss_pred cC--CCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 228 LN--GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 228 ~~--~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
.. .+.....+.|....++..-.+|-+|+. |.-.+ ......++|++ +|.. ...+.+.. +.+..
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-ilT~S--------GD~TCalWDie-~g~~--~~~f~GH~----gDV~s 191 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-ILTGS--------GDMTCALWDIE-TGQQ--TQVFHGHT----GDVMS 191 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCc-eEecC--------CCceEEEEEcc-cceE--EEEecCCc----ccEEE
Confidence 33 222111344555566667778887765 54433 24557788998 7754 67777775 67788
Q ss_pred ceeCC-CCcEEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEE
Q 004735 306 PKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (732)
Q Consensus 306 ~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~l 383 (732)
+..+| |++.+....- ... -+++|...+..++-.++ +.++ +.+.|.| +|..| .+...++.-++
T Consensus 192 lsl~p~~~ntFvSg~c-D~~--aklWD~R~~~c~qtF~ghesDI---------Nsv~ffP---~G~af-atGSDD~tcRl 255 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGC-DKS--AKLWDVRSGQCVQTFEGHESDI---------NSVRFFP---SGDAF-ATGSDDATCRL 255 (343)
T ss_pred EecCCCCCCeEEeccc-ccc--eeeeeccCcceeEeeccccccc---------ceEEEcc---CCCee-eecCCCceeEE
Confidence 88999 7775544332 333 34456666665554433 3333 3445553 55444 44456777888
Q ss_pred EEEECCCCceEEeccCC---CceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 384 GILDDFGHSLSLLDIPF---TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 384 y~~~~~~~~~~~lt~~~---~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
|-+. ..+...+-..+ ..+..+ .+-.++++|..... ....++|.-.++
T Consensus 256 yDlR--aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d---~~c~vWDtlk~e 306 (343)
T KOG0286|consen 256 YDLR--ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD---FTCNVWDTLKGE 306 (343)
T ss_pred Eeec--CCcEEeeeccCcccCCceeEEEcccccEEEeeecC---CceeEeeccccc
Confidence 8554 33332332232 235555 34456777766433 345666644443
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0035 Score=60.32 Aligned_cols=226 Identities=9% Similarity=0.005 Sum_probs=131.2
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.+.|.....+.|=.+|..+ |+.++..-+. +.+-......|||..+ +++.. ..|-++|.++.+
T Consensus 74 ~VWft~qg~gaiGhLdP~t--Gev~~ypLg~---Ga~Phgiv~gpdg~~W--itd~~--------~aI~R~dpkt~e--- 135 (353)
T COG4257 74 AVWFTAQGTGAIGHLDPAT--GEVETYPLGS---GASPHGIVVGPDGSAW--ITDTG--------LAIGRLDPKTLE--- 135 (353)
T ss_pred ceEEecCccccceecCCCC--CceEEEecCC---CCCCceEEECCCCCee--EecCc--------ceeEEecCcccc---
Confidence 4777776677788889888 7777665442 2233456688999864 33321 478899988877
Q ss_pred cEEcc----cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 236 PKVLV----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 236 ~~~lt----~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
+++.+ ........+.|.|+|. |.|+.... . --..|.. .+. +.++.... . .....++-.||
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G--~------yGrLdPa-~~~---i~vfpaPq-G--~gpyGi~atpd 199 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGN-LWFTGQIG--A------YGRLDPA-RNV---ISVFPAPQ-G--GGPYGICATPD 199 (353)
T ss_pred eEEeecccccCCCcccceeeCCCcc-EEEeeccc--c------ceecCcc-cCc---eeeeccCC-C--CCCcceEECCC
Confidence 55543 2234456789999997 77876321 1 1123333 222 23333322 1 45678889999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEecccc--cccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~ 389 (732)
|+++|.+-. + ..|.++|+.++..+.+...+ .....-.|+. .-+++. .+ ..+...++++|+.
T Consensus 200 Gsvwyasla--g-naiaridp~~~~aev~p~P~~~~~gsRriwsd------------pig~~w-it-twg~g~l~rfdPs 262 (353)
T COG4257 200 GSVWYASLA--G-NAIARIDPFAGHAEVVPQPNALKAGSRRIWSD------------PIGRAW-IT-TWGTGSLHRFDPS 262 (353)
T ss_pred CcEEEEecc--c-cceEEcccccCCcceecCCCcccccccccccC------------ccCcEE-Ee-ccCCceeeEeCcc
Confidence 998887654 2 34888999888666665221 2223345652 233444 33 3466789999998
Q ss_pred CCceEEeccC--CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 390 GHSLSLLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 390 ~~~~~~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
...++.-..+ .-.-.++ +++-+++.+.-.. ...|.++|.++..
T Consensus 263 ~~sW~eypLPgs~arpys~rVD~~grVW~sea~---agai~rfdpeta~ 308 (353)
T COG4257 263 VTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD---AGAIGRFDPETAR 308 (353)
T ss_pred cccceeeeCCCCCCCcceeeeccCCcEEeeccc---cCceeecCcccce
Confidence 8877644433 3333334 3333444432222 2356677665554
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.001 Score=65.00 Aligned_cols=136 Identities=11% Similarity=0.072 Sum_probs=80.8
Q ss_pred eEEECCEEEEEeCCCC-eEEEEeCCC-CCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 150 FRIFGDTVIFSNYKDQ-RLYKHSIDS-KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~-~l~~~d~~~-~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.+.++..++|.....+ .|-++|+.. +.|.-+...... +...++.+..|||||+.|+.... .+.++++|
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~---------~s~~~~lD 215 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTN---------ASFIYLLD 215 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeC---------CCcEEEEE
Confidence 3445555666544333 788888864 102212111111 12467788999999999776654 36899999
Q ss_pred cCCCCccccEEcccC----CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccC
Q 004735 228 LNGQNIQEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~----~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~ 303 (732)
.=.|. +..-..+ ........|+|||+.|.-.+ +...|++++++ +|.. +..+.+.. . ..+
T Consensus 216 Af~G~---~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs--------~dg~i~vw~~~-tg~~--v~~~~~~~-~--~~~ 278 (311)
T KOG1446|consen 216 AFDGT---VKSTFSGYPNAGNLPLSATFTPDSKFVLSGS--------DDGTIHVWNLE-TGKK--VAVLRGPN-G--GPV 278 (311)
T ss_pred ccCCc---EeeeEeeccCCCCcceeEEECCCCcEEEEec--------CCCcEEEEEcC-CCcE--eeEecCCC-C--CCc
Confidence 88776 3332222 22234678999999875443 24559999998 7765 33333321 1 344
Q ss_pred cCceeCCCC
Q 004735 304 TEPKWSSKG 312 (732)
Q Consensus 304 ~~~~wspDg 312 (732)
.-+.|.|--
T Consensus 279 ~~~~fnP~~ 287 (311)
T KOG1446|consen 279 SCVRFNPRY 287 (311)
T ss_pred cccccCCce
Confidence 566788753
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00068 Score=67.62 Aligned_cols=202 Identities=14% Similarity=0.067 Sum_probs=115.5
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHH-HHHHHHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVND-CCSCATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D-~~~~i~~l~~~~~~d~~ 574 (732)
|+||++ |.. +..........+.+.+.|+.++.+-.+-. .-.. ....... +...++.+.+....+..
T Consensus 1 plvvl~-gW~-gA~~~hl~KY~~~Y~~~g~~il~~~~~~~--------~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~ 67 (240)
T PF05705_consen 1 PLVVLL-GWM-GAKPKHLAKYSDLYQDPGFDILLVTSPPA--------DFFW---PSKRLAPAADKLLELLSDSQSASPP 67 (240)
T ss_pred CEEEEE-eCC-CCCHHHHHHHHHHHHhcCCeEEEEeCCHH--------HHee---eccchHHHHHHHHHHhhhhccCCCC
Confidence 566655 542 22223344466677779999998876421 0000 0011222 22334444443332234
Q ss_pred cEEEEEcChHHHHHHHHHh---C--------CCcceEEEeecCcCCHH------HHHhhcchh-------hhhhhhh---
Q 004735 575 RLCITGGSAGGYTTLAALA---F--------RDTFKAGASLYGVADLS------MLRAETHKF-------ESRYIDN--- 627 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~---~--------p~~~~a~v~~~~~~d~~------~~~~~~~~~-------~~~~~~~--- 627 (732)
+|.+..+|.||...+..+. + -+++++.|.-+...... .+....... .......
T Consensus 68 ~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (240)
T PF05705_consen 68 PILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTYSSSARAFSAALPKSSPRWFVPLWPLLQFLLR 147 (240)
T ss_pred CEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCccccccHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 8999999998777655432 1 11377777766553211 111111110 0000000
Q ss_pred -------hcC--Ch-hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcc
Q 004735 628 -------LVG--SE-KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697 (732)
Q Consensus 628 -------~~~--~~-~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 697 (732)
... +. ..+....-........+|-|++.++.|.+++.++.+++.+..++.|.+++...|++..|.-....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~ 227 (240)
T PF05705_consen 148 LSIISYFIFGYPDVQEYYRRALNDFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRK 227 (240)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhccc
Confidence 000 11 11111111112234568999999999999999999999999999999999999999999765556
Q ss_pred cHHHHHHHHHHHH
Q 004735 698 NIKFTLEQQMVFF 710 (732)
Q Consensus 698 ~~~~~~~~~~~fl 710 (732)
..++.++.+.+|+
T Consensus 228 ~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 228 HPDRYWRAVDEFW 240 (240)
T ss_pred CHHHHHHHHHhhC
Confidence 7788888887764
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00025 Score=74.93 Aligned_cols=200 Identities=15% Similarity=0.174 Sum_probs=106.9
Q ss_pred eEEECCEEEEEeCC-CCeEEEEeCCCCCCCceecCCCCC---CCCeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEE
Q 004735 150 FRIFGDTVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYG---EPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 150 ~~~~~~~i~f~~~~-~~~l~~~d~~~~~~~~~~lt~~~~---~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
|.....++++.-.. .|.|-++++.. +-+|..+.- ..+....|+.|.| |..+|+...++. .-+||
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~----PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg-------~i~lW 655 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNE----PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDG-------QINLW 655 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCC----CCCCCcccccccccCceeeecccCCCChHHeeecccCc-------eEEEE
Confidence 33344455555433 45777888753 333433210 0134567889999 888877666543 46889
Q ss_pred EEEcCCCC---ccccEEcccCCCceeccccCCCCC-eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 225 AIALNGQN---IQEPKVLVSGSDFYAFPRMDPRGE-RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 225 ~~d~~~~~---~~~~~~lt~~~~~~~~p~~SPDG~-~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
++...+.. .++...|+.+.+.+...+|.|=-. -|+..+ .+..|-++|+. +++. ...+.+..
T Consensus 656 r~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--------yd~Ti~lWDl~-~~~~--~~~l~gHt---- 720 (1012)
T KOG1445|consen 656 RLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--------YDSTIELWDLA-NAKL--YSRLVGHT---- 720 (1012)
T ss_pred EeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh--------ccceeeeeehh-hhhh--hheeccCc----
Confidence 88877653 111233343334444455555111 122111 24557888988 6654 33344544
Q ss_pred ccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccccccc----CCCceeecccceeeeeecCCCCEEEEEE
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF----SRPLWVFGINSYEIIQSHGEKNLIACSY 375 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~l~~~s 375 (732)
..+..++|||||+ ++-+.. .|. |.++++..++. .|-.++..+ ....|.. +|+.++++.
T Consensus 721 dqIf~~AWSpdGr~~AtVcK--Dg~--~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wac------------dgr~viv~G 783 (1012)
T KOG1445|consen 721 DQIFGIAWSPDGRRIATVCK--DGT--LRVYEPRSREQ-PVYEGKGPVGTRGARILWAC------------DGRIVIVVG 783 (1012)
T ss_pred CceeEEEECCCCcceeeeec--Cce--EEEeCCCCCCC-ccccCCCCccCcceeEEEEe------------cCcEEEEec
Confidence 5678999999999 554443 354 55566766543 333222211 1234554 666666554
Q ss_pred E-ECCEEEEEEEECCCCc
Q 004735 376 R-QNGRSYLGILDDFGHS 392 (732)
Q Consensus 376 ~-~~g~~~ly~~~~~~~~ 392 (732)
. ....++|-+|+.++-.
T Consensus 784 fdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred ccccchhhhhhhhhhhcc
Confidence 3 3344556556654433
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0047 Score=61.54 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=56.4
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++-....+..|.++|+++ +.-.+|.... .-.+.-..|||||.++++.+-+. ...||. ... .++.
T Consensus 209 ~l~tAS~gsssi~iWdpdt--g~~~pL~~~g---lgg~slLkwSPdgd~lfaAt~da-------vfrlw~--e~q-~wt~ 273 (445)
T KOG2139|consen 209 ILVTASFGSSSIMIWDPDT--GQKIPLIPKG---LGGFSLLKWSPDGDVLFAATCDA-------VFRLWQ--ENQ-SWTK 273 (445)
T ss_pred EEeecccCcceEEEEcCCC--CCcccccccC---CCceeeEEEcCCCCEEEEecccc-------eeeeeh--hcc-ccee
Confidence 4443444556899999998 6666666321 12235568999999877665433 134442 111 1111
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccC
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~ 265 (732)
.+.++ +.+.+....|||+|++|.|.....
T Consensus 274 erw~l-gsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 274 ERWIL-GSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred cceec-cCCceeeeeecCCCCEEEEEEcCC
Confidence 23332 333778889999999999987433
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.5e-05 Score=88.34 Aligned_cols=129 Identities=20% Similarity=0.200 Sum_probs=85.1
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-cc--cHHHHHHHHCCCEEEEEcCCCC-CCCChhhHHhhc
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL--NLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLL 547 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~~--~~~~~~l~~~G~~v~~~d~rG~-~g~g~~~~~~~~ 547 (732)
...++.-+|.|.... ..+ .|++|++|||....... .+ ......+..+..+|+.++||-. -|+...-.....
T Consensus 94 EDCLylNV~tp~~~~----~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~ 168 (545)
T KOG1516|consen 94 EDCLYLNVYTPQGCS----ESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAP 168 (545)
T ss_pred CCCceEEEeccCCCc----cCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCC
Confidence 345777888887621 112 89999999985433221 11 2223344556799999999942 222111111124
Q ss_pred cCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcC
Q 004735 548 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 608 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~ 608 (732)
+++| ..|...|++|+.++ -.-|+++|.|+|||+||..+..++. ...+|..+|..+|..
T Consensus 169 gN~g---l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 169 GNLG---LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred Cccc---HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 4444 67999999999775 3468999999999999999977776 335788888877754
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0055 Score=57.99 Aligned_cols=228 Identities=11% Similarity=0.052 Sum_probs=122.2
Q ss_pred CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC
Q 004735 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (732)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~ 242 (732)
..++|-++|+.+ +.+.++..-++ +........|.-||++. |+..++ ..+-++|+..-. ..++...
T Consensus 59 ~~qhvRlyD~~S--~np~Pv~t~e~-h~kNVtaVgF~~dgrWM-yTgseD--------gt~kIWdlR~~~---~qR~~~~ 123 (311)
T KOG0315|consen 59 GNQHVRLYDLNS--NNPNPVATFEG-HTKNVTAVGFQCDGRWM-YTGSED--------GTVKIWDLRSLS---CQRNYQH 123 (311)
T ss_pred cCCeeEEEEccC--CCCCceeEEec-cCCceEEEEEeecCeEE-EecCCC--------ceEEEEeccCcc---cchhccC
Confidence 456788999988 66644432211 12345566788999974 544333 355566776644 4555544
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~ 322 (732)
...++.....|+...|. +. +.+ ..|++.|+. .... ...++++.+ ..+......|||+.+...+. .
T Consensus 124 ~spVn~vvlhpnQteLi-s~-dqs------g~irvWDl~-~~~c-~~~liPe~~----~~i~sl~v~~dgsml~a~nn-k 188 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELI-SG-DQS------GNIRVWDLG-ENSC-THELIPEDD----TSIQSLTVMPDGSMLAAANN-K 188 (311)
T ss_pred CCCcceEEecCCcceEE-ee-cCC------CcEEEEEcc-CCcc-ccccCCCCC----cceeeEEEcCCCcEEEEecC-C
Confidence 45566677888877764 33 443 349999997 3322 134556665 77888999999994434444 4
Q ss_pred CeeeEEEEeccCCe----EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 323 GFWNLHKWIESNNE----VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 323 g~~~l~~~d~~~g~----~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
|. .|.+++-++. ..++++....... . -...++| |+++|+..+ .+..-.||..+.-=+..++|+.
T Consensus 189 G~--cyvW~l~~~~~~s~l~P~~k~~ah~~~---i---l~C~lSP---d~k~lat~s-sdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 189 GN--CYVWRLLNHQTASELEPVHKFQAHNGH---I---LRCLLSP---DVKYLATCS-SDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred cc--EEEEEccCCCccccceEhhheecccce---E---EEEEECC---CCcEEEeec-CCceEEEEecCCceeeEEEeec
Confidence 54 4444443432 2333322111110 0 0112332 666555443 4444556644422123446666
Q ss_pred CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 399 PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 399 ~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+...+-+. .+.++++++.+++. ....|| |++.++
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd-~~~rlW--~~~~~k 291 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSD-HTARLW--DLSAGK 291 (311)
T ss_pred CCceEEeeeeccCccEEEecCCC-Cceeec--ccccCc
Confidence 65444444 55566666666554 444454 445554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0057 Score=59.24 Aligned_cols=200 Identities=11% Similarity=0.038 Sum_probs=121.6
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
........|++|+++|+-.+.+ ..|.++|.-+.. ++..++-....+..-++||.|+.+|.-..+.
T Consensus 55 ~~Ki~~~~ws~Dsr~ivSaSqD---------GklIvWDs~Ttn--K~haipl~s~WVMtCA~sPSg~~VAcGGLdN---- 119 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRRIVSASQD---------GKLIVWDSFTTN--KVHAIPLPSSWVMTCAYSPSGNFVACGGLDN---- 119 (343)
T ss_pred ccceeeeEecCCcCeEEeeccC---------CeEEEEEccccc--ceeEEecCceeEEEEEECCCCCeEEecCcCc----
Confidence 3445667799999997665542 578888877643 1666666667788889999999988765333
Q ss_pred CCccEEEEEEec-CCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccc-cccc
Q 004735 270 WDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEF 347 (732)
Q Consensus 270 ~~~~~l~v~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~ 347 (732)
.-.||-+... .+|.....+.+.+.. +++.-..+-+|+.|+-. .|......+|+++|+......+ ..++
T Consensus 120 --~Csiy~ls~~d~~g~~~v~r~l~gHt----gylScC~f~dD~~ilT~----SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 120 --KCSIYPLSTRDAEGNVRVSRELAGHT----GYLSCCRFLDDNHILTG----SGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred --eeEEEecccccccccceeeeeecCcc----ceeEEEEEcCCCceEec----CCCceEEEEEcccceEEEEecCCcccE
Confidence 2334444322 134444455677775 88888899998876533 3556677789999887666533 2233
Q ss_pred CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcE
Q 004735 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSS 425 (732)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ 425 (732)
-... +.| .+...+++..-+....||- ...+. .+.....+.+|..+ ..+++ ..|.+.+.+..-+
T Consensus 190 ~sls---------l~p---~~~ntFvSg~cD~~aklWD--~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcR 254 (343)
T KOG0286|consen 190 MSLS---------LSP---SDGNTFVSGGCDKSAKLWD--VRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCR 254 (343)
T ss_pred EEEe---------cCC---CCCCeEEecccccceeeee--ccCcceeEeecccccccceEEEccCC-CeeeecCCCceeE
Confidence 2222 222 2333445555566677774 44444 44455557778887 34444 3445555555555
Q ss_pred EEEE
Q 004735 426 VAKV 429 (732)
Q Consensus 426 ly~~ 429 (732)
+|-+
T Consensus 255 lyDl 258 (343)
T KOG0286|consen 255 LYDL 258 (343)
T ss_pred EEee
Confidence 5544
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00025 Score=70.21 Aligned_cols=97 Identities=10% Similarity=-0.000 Sum_probs=62.0
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHH-HHHHHHhcCCCCCCc
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS-CATFLVGSGKADEKR 575 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~r 575 (732)
.|+++|++.+ ....|..+++.+...++.|+.++++|...... ....++++.+ .++.+.+.. ...+
T Consensus 2 ~lf~~p~~gG--~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~~----------~~~si~~la~~y~~~I~~~~--~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGG--SASSYRPLARALPDDVIGVYGIEYPGRGDDEP----------PPDSIEELASRYAEAIRARQ--PEGP 67 (229)
T ss_dssp EEEEESSTTC--SGGGGHHHHHHHTTTEEEEEEECSTTSCTTSH----------EESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred eEEEEcCCcc--CHHHHHHHHHhCCCCeEEEEEEecCCCCCCCC----------CCCCHHHHHHHHHHHhhhhC--CCCC
Confidence 5888998743 55677778887766568899999986541111 0122333332 233333331 2238
Q ss_pred EEEEEcChHHHHHHHHHh----CCCcceEEEeecCc
Q 004735 576 LCITGGSAGGYTTLAALA----FRDTFKAGASLYGV 607 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~ 607 (732)
+.|+|||+||.+|+.++. ....+..++++.+.
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~ 103 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSP 103 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCS
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecCC
Confidence 999999999999998886 44557778777743
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00045 Score=67.19 Aligned_cols=263 Identities=11% Similarity=0.004 Sum_probs=140.1
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccc--ccccCCceeEEECC-EEEEEeCCCC
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT--AQEYGGGAFRIFGD-TVIFSNYKDQ 165 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~--~~~~g~~~~~~~~~-~i~f~~~~~~ 165 (732)
.+++.++|| |+.+.--. -+|-+.+|.+..+ +.++-+. +.+... ..+....+..++.| .++.+...+|
T Consensus 215 h~EcA~FSPDgqyLvsgS----vDGFiEVWny~~G---KlrKDLk--YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGS----VDGFIEVWNYTTG---KLRKDLK--YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred chhheeeCCCCceEeecc----ccceeeeehhccc---hhhhhhh--hhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 468999999 66554322 3577777877544 3322211 111111 11122334444433 3444444567
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
.|-++.+.+| .-.|+.... +.......+||.|+.+|+-..-+ ..+-+..+.+|+. .+..-....+
T Consensus 286 kIKvWri~tG-~ClRrFdrA---HtkGvt~l~FSrD~SqiLS~sfD---------~tvRiHGlKSGK~--LKEfrGHsSy 350 (508)
T KOG0275|consen 286 KIKVWRIETG-QCLRRFDRA---HTKGVTCLSFSRDNSQILSASFD---------QTVRIHGLKSGKC--LKEFRGHSSY 350 (508)
T ss_pred cEEEEEEecc-hHHHHhhhh---hccCeeEEEEccCcchhhccccc---------ceEEEeccccchh--HHHhcCcccc
Confidence 7777776662 334444321 12223556799999987654332 3444455666651 2222233457
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe--cCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV--AGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~--~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
++...|++||.+|.-.+.+ ..+-+++.+ +++. ...+ .+.+ ..+..+-.-|..- -+.+.++
T Consensus 351 vn~a~ft~dG~~iisaSsD--------gtvkvW~~K-tteC--~~Tfk~~~~d----~~vnsv~~~PKnpeh~iVCNr-- 413 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSD--------GTVKVWHGK-TTEC--LSTFKPLGTD----YPVNSVILLPKNPEHFIVCNR-- 413 (508)
T ss_pred ccceEEcCCCCeEEEecCC--------ccEEEecCc-chhh--hhhccCCCCc----ccceeEEEcCCCCceEEEEcC--
Confidence 7788999999999766532 236666666 4443 1111 1222 4455555556554 4455555
Q ss_pred CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEeccCCC
Q 004735 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFT 401 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~~~ 401 (732)
...+|+++..+.-++....++.+-+ .+.. ....+ .|.++|...+ + ..+|-+...+|.+ +.++-..-
T Consensus 414 -sntv~imn~qGQvVrsfsSGkREgG--dFi~----~~lSp---kGewiYcigE-D--~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 414 -SNTVYIMNMQGQVVRSFSSGKREGG--DFIN----AILSP---KGEWIYCIGE-D--GVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred -CCeEEEEeccceEEeeeccCCccCC--ceEE----EEecC---CCcEEEEEcc-C--cEEEEEEeecCceeeeeecccc
Confidence 2458899998877777775543322 2221 11122 6777776654 2 3577777666665 44555444
Q ss_pred ceEEe
Q 004735 402 DIDNI 406 (732)
Q Consensus 402 ~v~~~ 406 (732)
++..+
T Consensus 481 dvIGl 485 (508)
T KOG0275|consen 481 DVIGL 485 (508)
T ss_pred ccccc
Confidence 44444
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.03 Score=59.06 Aligned_cols=230 Identities=13% Similarity=0.071 Sum_probs=125.9
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc---
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--- 241 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--- 241 (732)
++|.++|+.+ |...+--.....+-....-+.||-|+++++.... +.|-+.+..+- ..|..
T Consensus 282 ~~l~IWDI~t--G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----------~sisIyEtpsf-----~lld~Ksl 344 (698)
T KOG2314|consen 282 QQLIIWDIAT--GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----------NSISIYETPSF-----MLLDKKSL 344 (698)
T ss_pred ceEEEEEccc--cchhcceeccCCCccccceEEeccCCceeEEecc----------ceEEEEecCce-----eeeccccc
Confidence 5899999998 6543322111111223344689999998777654 23333332210 01100
Q ss_pred CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCC-ceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEe
Q 004735 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD 319 (732)
Q Consensus 242 ~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~ 319 (732)
....+.+..|||-+.-|||..-...+.| .++-++.+. ++ +++...++. .....+.|-..|. |.|-.+
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~p---arvtL~evP-s~~~iRt~nlfn-------VsDckLhWQk~gdyLcvkvd 413 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIP---ARVTLMEVP-SKREIRTKNLFN-------VSDCKLHWQKSGDYLCVKVD 413 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCc---ceEEEEecC-ccceeeecccee-------eeccEEEeccCCcEEEEEEE
Confidence 1123456889999999999874443332 346666665 33 332222322 2235678999999 776665
Q ss_pred ccC-----C---eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC--CEEEEEEEECC
Q 004735 320 RKN-----G---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDF 389 (732)
Q Consensus 320 ~~~-----g---~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~--g~~~ly~~~~~ 389 (732)
+.. | +..|++++-..=.+..+ +....+-...|.| .|+.+...+... .....|.+...
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP------------~gdkF~vi~g~~~k~tvsfY~~e~~ 480 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEP------------HGDKFAVISGNTVKNTVSFYAVETN 480 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeecc------------CCCeEEEEEccccccceeEEEeecC
Confidence 521 1 12455554322111211 2222334456766 677766666443 34567777655
Q ss_pred CCceEEecc-CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 390 GHSLSLLDI-PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 390 ~~~~~~lt~-~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
.++.+.+.. +.-....+ .++.+++++.++-.+....|+.+|++-..
T Consensus 481 ~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 481 IKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred CCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 555444332 22334444 56777888877766677788888876433
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00078 Score=63.07 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=82.6
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
..|++|...+|+|++...++.+.+..-+.....||++-+ +++ +..+-..-+..++..|+-|-|.++|+....
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln---- 179 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLN---- 179 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEecc-CCC---ceeeehhccCCccccccccCcEEEEEccCc----
Confidence 468899999999998666776655432223467777544 566 666666666777899999999999986332
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCC---CCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEE
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFD---PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 338 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~---~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~ 338 (732)
....-|-+|.. +|.+.+++.+-.-. +.-..-+.......+|.|++..-. ...++++|+.+|+.-
T Consensus 180 -~~V~a~dyd~~-tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---g~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 180 -YEVDAYDYDCP-TGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---GGTVQKVDPTTGKIL 246 (310)
T ss_pred -eEEeeeecCCC-cccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec---CcEEEEECCCCCcEE
Confidence 12222555676 67655444322110 000022334455555555544433 245889999998753
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0029 Score=62.73 Aligned_cols=219 Identities=10% Similarity=0.059 Sum_probs=115.6
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-----HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhh
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-----LSIQYWTSRGWAFVDVNYGGSTGYGREFRERL 546 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-----~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~ 546 (732)
-..+++.++-.. ++++|++|-.|.-+-... ..|. ...+. ....|.++-+|.+|.......+
T Consensus 8 ~G~v~V~v~G~~--------~~~kp~ilT~HDvGlNh~-scF~~ff~~~~m~~-i~~~f~i~Hi~aPGqe~ga~~~---- 73 (283)
T PF03096_consen 8 YGSVHVTVQGDP--------KGNKPAILTYHDVGLNHK-SCFQGFFNFEDMQE-ILQNFCIYHIDAPGQEEGAATL---- 73 (283)
T ss_dssp TEEEEEEEESS----------TTS-EEEEE--TT--HH-HHCHHHHCSHHHHH-HHTTSEEEEEE-TTTSTT--------
T ss_pred ceEEEEEEEecC--------CCCCceEEEeccccccch-HHHHHHhcchhHHH-HhhceEEEEEeCCCCCCCcccc----
Confidence 446777777443 346899999998632211 1122 22333 3456999999999875432222
Q ss_pred ccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh---------
Q 004735 547 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE--------- 616 (732)
Q Consensus 547 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~--------- 616 (732)
...+....++++.+.+..+.+...+ +.++-+|--+|+++-.+.+. +|+++.+.|++++...-..+...
T Consensus 74 p~~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~ 151 (283)
T PF03096_consen 74 PEGYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWL 151 (283)
T ss_dssp -TT-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH---
T ss_pred cccccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccc
Confidence 2222223466666666666665443 57999999999999998888 99999999999987643322111
Q ss_pred ------cchhhhhhhhhhcC----------------------Ch-------hhhhhcCcc-ccCCCCCCCEEEEEeCCCC
Q 004735 617 ------THKFESRYIDNLVG----------------------SE-------KDYYEKSPI-NFVDKFSCPIILFQGLEDK 660 (732)
Q Consensus 617 ------~~~~~~~~~~~~~~----------------------~~-------~~~~~~sp~-~~~~~i~~P~Lii~G~~D~ 660 (732)
+.......+...++ ++ +.|..+..+ ...+...||+|++.|+..+
T Consensus 152 L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp 231 (283)
T PF03096_consen 152 LYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSP 231 (283)
T ss_dssp ----CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTST
T ss_pred ccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCc
Confidence 00001111222221 11 111111122 2245566999999999987
Q ss_pred ccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 661 ~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
. .+.+.++..+|... ..+++.++++|= ....++.....+.+.-|++
T Consensus 232 ~--~~~vv~~ns~Ldp~--~ttllkv~dcGg-lV~eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 232 H--VDDVVEMNSKLDPT--KTTLLKVADCGG-LVLEEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp T--HHHHHHHHHHS-CC--CEEEEEETT-TT--HHHH-HHHHHHHHHHHHH
T ss_pred c--hhhHHHHHhhcCcc--cceEEEecccCC-cccccCcHHHHHHHHHHHc
Confidence 5 56788888888654 679999999864 3344556666665555543
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0081 Score=65.38 Aligned_cols=219 Identities=8% Similarity=-0.029 Sum_probs=128.3
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC-CCceeccccCCCCCeEEEEeccCCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
...+.++.|||++.++++.+..+.+ .-.|-+.|+.+|+ . +... .......+|.+|++.++|++.+..+.
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~G~e----~y~lr~kdL~tg~---~--~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~r- 198 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVLGDE----QYTLRFKDLATGE---E--LPDEITNTSGSFAWAADGKTLFYTRLDENHR- 198 (682)
T ss_pred eeeeeeeeCCCCceEEEEEeccccc----EEEEEEEeccccc---c--cchhhcccccceEEecCCCeEEEEEEcCCCC-
Confidence 4557788999999999988776655 4788888999886 2 2111 12245678999999999999766553
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccC--CeEEEecccccc
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN--NEVLAIYSLDAE 346 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~--g~~~~l~~~~~~ 346 (732)
-.+|+...+. +.......+....+. ...-.+.=+...+ |+..... ....+++.++.+. ++.+.+.+...
T Consensus 199 --p~kv~~h~~g-t~~~~d~lvyeE~d~---~f~~~v~~s~s~~yi~i~~~~-~~tsE~~ll~a~~p~~~p~vv~pr~~- 270 (682)
T COG1770 199 --PDKVWRHRLG-TPGSSDELVYEEKDD---RFFLSVGRSRSEAYIVISLGS-HITSEVRLLDADDPEAEPKVVLPREN- 270 (682)
T ss_pred --cceEEEEecC-CCCCcceEEEEcCCC---cEEEEeeeccCCceEEEEcCC-CcceeEEEEecCCCCCceEEEEEcCC-
Confidence 3458887776 311122334444431 1222222334445 4444433 4455677776655 34555554321
Q ss_pred cCCCceeecccceeeeeecCCCCEEEEEEEECC-EEEEEEEEC--CCCceEEeccCCC--ceEEeeEeCCEEEEEEeCCC
Q 004735 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDD--FGHSLSLLDIPFT--DIDNITLGNDCLFVEGASGV 421 (732)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g-~~~ly~~~~--~~~~~~~lt~~~~--~v~~~~~~~~~~~~~~~~~~ 421 (732)
+..+... +.++.+|+.++.+| ..+|+.... ....++.+..... .+..+..-++.+ +...+..
T Consensus 271 --g~eY~~e----------h~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~l-Vl~eR~~ 337 (682)
T COG1770 271 --GVEYSVE----------HGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHL-VLLERQE 337 (682)
T ss_pred --CcEEeee----------ecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEE-EEEeccc
Confidence 1122211 15678888888888 466777655 2223454444332 244443333444 4455567
Q ss_pred CCcEEEEEEcCCCcceeee
Q 004735 422 EPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 422 ~~~~ly~~dl~~~~~~~lt 440 (732)
..+.+++.+..+++...|.
T Consensus 338 glp~v~v~~~~~~~~~~i~ 356 (682)
T COG1770 338 GLPRVVVRDRKTGEERGIA 356 (682)
T ss_pred CCceEEEEecCCCceeeEE
Confidence 7788999998888765554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.026 Score=59.19 Aligned_cols=204 Identities=14% Similarity=0.112 Sum_probs=106.0
Q ss_pred HhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCC
Q 004735 84 VSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK 163 (732)
Q Consensus 84 i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~ 163 (732)
+.+..+.+.++..+|++...|... -+|. |..++.++| ..-.+.+.. |...+..+..++..-+|+-.-
T Consensus 316 i~GHnK~ITaLtv~~d~~~i~Sgs---yDG~--I~~W~~~~g-~~~~~~g~~-------h~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 316 ISGHNKSITALTVSPDGKTIYSGS---YDGH--INSWDSGSG-TSDRLAGKG-------HTNQIKGMAASESGELFTIGW 382 (603)
T ss_pred ecccccceeEEEEcCCCCEEEeec---cCce--EEEEecCCc-ccccccccc-------ccceEEEEeecCCCcEEEEec
Confidence 444467777888887223333332 2354 344444443 333343322 222344444444223344445
Q ss_pred CCeEEEEeCCCCCCCcee--cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc
Q 004735 164 DQRLYKHSIDSKDSSPLP--ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~--lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
+..|.+.++.++ +-... +.-+. +--..+.++||..++.++. .+|.++.-.++ +..+.-
T Consensus 383 Dd~l~~~~~~~~-~~t~~~~~~lg~-----QP~~lav~~d~~~avv~~~----------~~iv~l~~~~~----~~~~~~ 442 (603)
T KOG0318|consen 383 DDTLRVISLKDN-GYTKSEVVKLGS-----QPKGLAVLSDGGTAVVACI----------SDIVLLQDQTK----VSSIPI 442 (603)
T ss_pred CCeEEEEecccC-cccccceeecCC-----CceeEEEcCCCCEEEEEec----------CcEEEEecCCc----ceeecc
Confidence 667888888542 21111 11111 1124567778776565555 45665542222 222221
Q ss_pred CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 242 ~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
+ -.....+.+||++.+|.-. ....|+++.+. +++..+........ +.+..+++||||..+...+.
T Consensus 443 ~-y~~s~vAv~~~~~~vaVGG--------~Dgkvhvysl~-g~~l~ee~~~~~h~----a~iT~vaySpd~~yla~~Da- 507 (603)
T KOG0318|consen 443 G-YESSAVAVSPDGSEVAVGG--------QDGKVHVYSLS-GDELKEEAKLLEHR----AAITDVAYSPDGAYLAAGDA- 507 (603)
T ss_pred c-cccceEEEcCCCCEEEEec--------ccceEEEEEec-CCcccceeeeeccc----CCceEEEECCCCcEEEEecc-
Confidence 1 1122457899999776543 23449999998 55544333333332 56788999999984445544
Q ss_pred CCeeeEEEEeccCCeE
Q 004735 322 NGFWNLHKWIESNNEV 337 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~ 337 (732)
.+ .+..+|.++.+.
T Consensus 508 ~r--kvv~yd~~s~~~ 521 (603)
T KOG0318|consen 508 SR--KVVLYDVASREV 521 (603)
T ss_pred CC--cEEEEEcccCce
Confidence 33 355667777655
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00092 Score=69.29 Aligned_cols=237 Identities=12% Similarity=0.057 Sum_probs=118.0
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcc------cCCCCCcccccccccCCceeEEECCEEEEEe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSD------ITPKEYAVRTTAQEYGGGAFRIFGDTVIFSN 161 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~------l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~ 161 (732)
..+..++|+| |+.+..+....+ ..|+-++-. +..+ .+.+-.+....+....-++|.+.....+.+.
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aq----akl~DRdG~---~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQ----AKLLDRDGF---EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred cccceeeecCCCCeEEEEecCcc----eeEEccCCc---eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe
Confidence 3457889999 887777765332 122222110 1000 0111112233333334456766666666676
Q ss_pred CCCCeEEEEeCCCCCCCceecCCCC-CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc
Q 004735 162 YKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt 240 (732)
..++.|-+|++.....+.+.+.+.. +.........+|+|||++|+.-+.+. .|-+++..+-... +.-..
T Consensus 288 s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---------SIQ~W~~~~~~v~-p~~~v 357 (641)
T KOG0772|consen 288 SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---------SIQIWDKGSRTVR-PVMKV 357 (641)
T ss_pred cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---------ceeeeecCCcccc-cceEe
Confidence 6777777777753102233332221 11123346678999999987776643 4444554321100 11111
Q ss_pred ----cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEE
Q 004735 241 ----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 316 (732)
Q Consensus 241 ----~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~ 316 (732)
.+..-+....||+||++|+--+. ...|-++|+..-.+. +....+-... ..-....||||.+|++
T Consensus 358 k~AH~~g~~Itsi~FS~dg~~LlSRg~--------D~tLKvWDLrq~kkp--L~~~tgL~t~--~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDGNYLLSRGF--------DDTLKVWDLRQFKKP--LNVRTGLPTP--FPGTDCCFSPDDKLIL 425 (641)
T ss_pred eeccCCCCceeEEEeccccchhhhccC--------CCceeeeeccccccc--hhhhcCCCcc--CCCCccccCCCceEEE
Confidence 11123456789999999874442 234778888732222 2222221100 2235788999998766
Q ss_pred EEec---cCCeeeEEEEeccCCe-EEEecccccccCCCceee
Q 004735 317 VTDR---KNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 317 ~~~~---~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~ 354 (732)
+... +.....|+.+|..+=+ +..|.-....+..-.|.+
T Consensus 426 TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 426 TGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred ecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 5432 1223468888876532 223322223333445665
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.017 Score=56.64 Aligned_cols=220 Identities=14% Similarity=0.152 Sum_probs=117.0
Q ss_pred CcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccC---CceeEE
Q 004735 77 SPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYG---GGAFRI 152 (732)
Q Consensus 77 ~~~~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g---~~~~~~ 152 (732)
.||.+..+-+....+.++.++. |+.+.-.. .++.+.||..++-.. +..+ ..|.++ +|+ ...|++
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~----~Dr~Ir~w~~~DF~~-~eHr------~~R~nv-e~dhpT~V~Fap 142 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATIS----GDRSIRLWDVRDFEN-KEHR------CIRQNV-EYDHPTRVVFAP 142 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEe----CCceEEEEecchhhh-hhhh------Hhhccc-cCCCceEEEECC
Confidence 3677777777788889999997 66665544 257777777654311 1111 223332 222 123444
Q ss_pred ECCEEEEEeCCCCeEEEEeCCC--CCCCceecCCCC--CCCCeE---eeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDS--KDSSPLPITPDY--GEPLVS---YADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~--~~~~~~~lt~~~--~~~~~~---~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
+-..+++.-...+.|+++-+.. .++-+-..+.-+ ..+..+ .-+.-.. ++..++..+... +.|.+
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~d--------t~i~l 213 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLD--------TKICL 213 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCC--------CcEEE
Confidence 4445655554555777777642 101111111110 000000 1111122 333323333322 68899
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee---EEecCCCCCcccc
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR---VCVAGFDPTIVES 302 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~---~~~~~~~~~~~~~ 302 (732)
+++.|.- ...+..........+.||||+.|+...+.. ...+|-.-...+|+.+++ -.+.+.. ..
T Consensus 214 w~lkGq~---L~~idtnq~~n~~aavSP~GRFia~~gFTp------DVkVwE~~f~kdG~fqev~rvf~LkGH~----sa 280 (420)
T KOG2096|consen 214 WDLKGQL---LQSIDTNQSSNYDAAVSPDGRFIAVSGFTP------DVKVWEPIFTKDGTFQEVKRVFSLKGHQ----SA 280 (420)
T ss_pred EecCCce---eeeeccccccccceeeCCCCcEEEEecCCC------CceEEEEEeccCcchhhhhhhheeccch----hh
Confidence 9998543 333433333344678999999998765332 223443333446765443 3455554 67
Q ss_pred CcCceeCCCCc-EEEEEeccCCeeeEEEEec
Q 004735 303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 303 ~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~ 332 (732)
+...+||++.+ ++- ... .|.|+||-.|.
T Consensus 281 V~~~aFsn~S~r~vt-vSk-DG~wriwdtdV 309 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVT-VSK-DGKWRIWDTDV 309 (420)
T ss_pred eeeeeeCCCcceeEE-Eec-CCcEEEeeccc
Confidence 78899999998 554 444 68999986654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.011 Score=59.95 Aligned_cols=209 Identities=12% Similarity=0.073 Sum_probs=111.6
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCce-eccccCCCCCeEEEEeccCCCCCCCc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY-AFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~-~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
+...+|.||+++++. .-.+ ...+-++|++.++ ...-..-+++. ..| +.++ + .+-+. . .
T Consensus 98 ~~~~ls~dgk~~~V~-N~TP------a~SVtVVDl~~~k---vv~ei~~PGC~~iyP-~~~~-~-F~~lC--~------D 156 (342)
T PF06433_consen 98 NMFALSADGKFLYVQ-NFTP------ATSVTVVDLAAKK---VVGEIDTPGCWLIYP-SGNR-G-FSMLC--G------D 156 (342)
T ss_dssp GGEEE-TTSSEEEEE-EESS------SEEEEEEETTTTE---EEEEEEGTSEEEEEE-EETT-E-EEEEE--T------T
T ss_pred cceEEccCCcEEEEE-ccCC------CCeEEEEECCCCc---eeeeecCCCEEEEEe-cCCC-c-eEEEe--c------C
Confidence 556899999985544 3222 4789999999887 43322223322 233 1222 2 22222 1 2
Q ss_pred cEEEEEEecCCCceeeeE--EecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccc---cc
Q 004735 273 AELWVGYISENGDVYKRV--CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD---AE 346 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~--~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~---~~ 346 (732)
..+..+.++.+|+..... .+...+ + .-...+.++.++. ++|.+-. .++|.+++.+...+..-+-+ ..
T Consensus 157 Gsl~~v~Ld~~Gk~~~~~t~~F~~~~-d--p~f~~~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 157 GSLLTVTLDADGKEAQKSTKVFDPDD-D--PLFEHPAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp SCEEEEEETSTSSEEEEEEEESSTTT-S---B-S--EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HH
T ss_pred CceEEEEECCCCCEeEeeccccCCCC-c--ccccccceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCcc
Confidence 236667777667654222 221111 1 3345667766655 8887765 35888888776654332110 01
Q ss_pred cCCCceeecccc-eeeeeecCCCCEEEEEEEE-------CCEEEEEEEECCCCce-EEeccCCCceEEe--eEeCCEEEE
Q 004735 347 FSRPLWVFGINS-YEIIQSHGEKNLIACSYRQ-------NGRSYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFV 415 (732)
Q Consensus 347 ~~~~~w~~~~~~-~~~~~~~~~~~~l~~~s~~-------~g~~~ly~~~~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~ 415 (732)
.....|-|+... +++.+ ..++||+.-.. ++...||.+|+++++. .++.... .+.++ +.+++-++|
T Consensus 230 e~~~~WrPGG~Q~~A~~~---~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 230 EKADGWRPGGWQLIAYHA---ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLY 305 (342)
T ss_dssp HHHTTEEE-SSS-EEEET---TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEE
T ss_pred ccccCcCCcceeeeeecc---ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEE
Confidence 123578886644 44433 56677776542 3467899999999874 4454322 23333 445555555
Q ss_pred EEeCCCCCcEEEEEEcCCCcc
Q 004735 416 EGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 416 ~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..+. ....|+++|..+|+.
T Consensus 306 ~~~~--~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 306 ALSA--GDGTLDVYDAATGKL 324 (342)
T ss_dssp EEET--TTTEEEEEETTT--E
T ss_pred EEcC--CCCeEEEEeCcCCcE
Confidence 5443 235799999999875
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0048 Score=60.32 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=132.3
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC---Cc-ccHHHHHHHHCCCEEEEEcCCCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GI-LNLSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~---~~-~~~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
-++..+++. . ..++..++--. ++++|++|-.|.-+..... .. ....++.+.++ |.|+-+|.+|.-
T Consensus 22 ~~e~~V~T~-~-G~v~V~V~Gd~--------~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe 90 (326)
T KOG2931|consen 22 CQEHDVETA-H-GVVHVTVYGDP--------KGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQE 90 (326)
T ss_pred ceeeeeccc-c-ccEEEEEecCC--------CCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccc
Confidence 356677775 3 56777777543 2367889999986333221 11 12345666777 999999998753
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA 615 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~ 615 (732)
.-.. ....++..-..+++.+.+..+++... -+-|.-+|--+|+++-.+.+. ||+++.+.|++++...-..+..
T Consensus 91 ~gAp----~~p~~y~yPsmd~LAd~l~~VL~~f~--lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwie 164 (326)
T KOG2931|consen 91 DGAP----SFPEGYPYPSMDDLADMLPEVLDHFG--LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIE 164 (326)
T ss_pred cCCc----cCCCCCCCCCHHHHHHHHHHHHHhcC--cceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHH
Confidence 2211 22233333447788888887777643 457889999999999998888 9999999999987543221111
Q ss_pred ---h------------cchhhhhhhhhhcC----------------------Ch-------hhhhhcCcccc-----CCC
Q 004735 616 ---E------------THKFESRYIDNLVG----------------------SE-------KDYYEKSPINF-----VDK 646 (732)
Q Consensus 616 ---~------------~~~~~~~~~~~~~~----------------------~~-------~~~~~~sp~~~-----~~~ 646 (732)
. +.......+...++ ++ +.|..+..+.. ...
T Consensus 165 w~~~K~~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~t 244 (326)
T KOG2931|consen 165 WAYNKVSSNLLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTT 244 (326)
T ss_pred HHHHHHHHHHHHhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCcc
Confidence 0 00000111111221 10 11111111111 114
Q ss_pred CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 647 FSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
++||+|++.|.+-+.+ +...++..+|... ..+++.+.++|- ....++.....+.+.=|
T Consensus 245 lkc~vllvvGd~Sp~~--~~vv~~n~~Ldp~--~ttllk~~d~g~-l~~e~qP~kl~ea~~~F 302 (326)
T KOG2931|consen 245 LKCPVLLVVGDNSPHV--SAVVECNSKLDPT--YTTLLKMADCGG-LVQEEQPGKLAEAFKYF 302 (326)
T ss_pred ccccEEEEecCCCchh--hhhhhhhcccCcc--cceEEEEcccCC-cccccCchHHHHHHHHH
Confidence 5699999999998653 4566666666543 568888888875 33434555555444433
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.6e-05 Score=78.22 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=64.0
Q ss_pred CCCCCEEEEEcCCCCCc-cCCcccHHHHHHHH---CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHh
Q 004735 492 EEKPPLLVKSHGGPTSE-ARGILNLSIQYWTS---RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG 567 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~-~~~~~~~~~~~l~~---~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 567 (732)
+...|++|++||..... .......+...+.. .++.|+++|+..... ..|..+.... ...-..+...+..|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~n~--~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVANT--RLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhcc--ccccchhhhH--HHHHHHHHHHHHHHHh
Confidence 34679999999985444 23333344444444 589999999852111 1222221100 0112345556777776
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEeecCcC
Q 004735 568 SGKADEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYGVA 608 (732)
Q Consensus 568 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~~~~~ 608 (732)
...++.++|.|+|||+||++|..+.. ... ++..+..+.|..
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 65688999999999999999999988 444 788888887754
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.037 Score=59.73 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=112.0
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
...++++++.. .++.|+.+|.++ |+..=-.... ......|... + ..|++ ... ...|+.+|.++
T Consensus 117 ~v~~~~v~v~~-~~g~l~ald~~t--G~~~W~~~~~---~~~~ssP~v~-~-~~v~v-~~~--------~g~l~ald~~t 179 (394)
T PRK11138 117 TVAGGKVYIGS-EKGQVYALNAED--GEVAWQTKVA---GEALSRPVVS-D-GLVLV-HTS--------NGMLQALNESD 179 (394)
T ss_pred EEECCEEEEEc-CCCEEEEEECCC--CCCcccccCC---CceecCCEEE-C-CEEEE-ECC--------CCEEEEEEccC
Confidence 44567776653 567899999987 5432111111 1122334443 3 34443 321 25899999999
Q ss_pred CCccccE-Ecc-cCCCc----eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc----
Q 004735 231 QNIQEPK-VLV-SGSDF----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV---- 300 (732)
Q Consensus 231 ~~~~~~~-~lt-~~~~~----~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~---- 300 (732)
|+ .. ... ..+.. ...|... +..+++.. ....++.+|.+ +|+..+...+........
T Consensus 180 G~---~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~--------~~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 180 GA---VKWTVNLDVPSLTLRGESAPATA--FGGAIVGG--------DNGRVSAVLME-QGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CC---EeeeecCCCCcccccCCCCCEEE--CCEEEEEc--------CCCEEEEEEcc-CChhhheeccccCCCccchhcc
Confidence 87 32 111 11111 1234433 23454432 23458888888 787644332211100000
Q ss_pred -ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 301 -ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 301 -~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
.....|... |+.+|+.+.. ..|+.+|+.+|+..--.+. ..+. .... .++.+|+... +
T Consensus 246 ~~~~~sP~v~-~~~vy~~~~~----g~l~ald~~tG~~~W~~~~----~~~~------~~~~-----~~~~vy~~~~-~- 303 (394)
T PRK11138 246 VDVDTTPVVV-GGVVYALAYN----GNLVALDLRSGQIVWKREY----GSVN------DFAV-----DGGRIYLVDQ-N- 303 (394)
T ss_pred cccCCCcEEE-CCEEEEEEcC----CeEEEEECCCCCEEEeecC----CCcc------CcEE-----ECCEEEEEcC-C-
Confidence 001233332 4445554432 3689999998865321111 1100 0111 5667777653 2
Q ss_pred EEEEEEEECCCCceEEecc--CCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 380 RSYLGILDDFGHSLSLLDI--PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 380 ~~~ly~~~~~~~~~~~lt~--~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+|+.++.++|+..--.. ...........++.++ +.... ..|+.+|.++|+.
T Consensus 304 -g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~-v~~~~---G~l~~ld~~tG~~ 357 (394)
T PRK11138 304 -DRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLV-VGDSE---GYLHWINREDGRF 357 (394)
T ss_pred -CeEEEEECCCCcEEEcccccCCCcccCCEEECCEEE-EEeCC---CEEEEEECCCCCE
Confidence 468999998886532111 1122222233355554 43322 4699999988874
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=70.12 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=53.1
Q ss_pred EEEEcCCCCCccCCcccHHHHHHHHCCCE---EEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 498 LVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 498 vl~~HGg~~~~~~~~~~~~~~~l~~~G~~---v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
||++||.. ......|..+++.|.++||. |++++|-.... ........ .......++.+.|+.+++.. ..
T Consensus 4 VVlVHG~~-~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~T--Ga- 75 (219)
T PF01674_consen 4 VVLVHGTG-GNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAYT--GA- 75 (219)
T ss_dssp EEEE--TT-TTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHHH--T--
T ss_pred EEEECCCC-cchhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHhh--CC-
Confidence 78999973 33556788899999999999 89999943221 11111111 01122466777777777653 35
Q ss_pred cEEEEEcChHHHHHHHHHh
Q 004735 575 RLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~ 593 (732)
||-|+|||+||.++-+++.
T Consensus 76 kVDIVgHS~G~~iaR~yi~ 94 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIK 94 (219)
T ss_dssp -EEEEEETCHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHH
Confidence 9999999999999988876
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.014 Score=58.28 Aligned_cols=219 Identities=13% Similarity=0.052 Sum_probs=120.8
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.+++....++.+|.+.+.. +...++-.+ +..+.....|.|||++++...++ ..|.++++.++..
T Consensus 161 ~illAG~~DGsvWmw~ip~--~~~~kv~~G---h~~~ct~G~f~pdGKr~~tgy~d---------gti~~Wn~ktg~p-- 224 (399)
T KOG0296|consen 161 HILLAGSTDGSVWMWQIPS--QALCKVMSG---HNSPCTCGEFIPDGKRILTGYDD---------GTIIVWNPKTGQP-- 224 (399)
T ss_pred cEEEeecCCCcEEEEECCC--cceeeEecC---CCCCcccccccCCCceEEEEecC---------ceEEEEecCCCce--
Confidence 5666666788999999986 444444444 24555666799999997665442 5788999999871
Q ss_pred cEEcccCCC-ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE------ecCCCCCccccCcCcee
Q 004735 236 PKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC------VAGFDPTIVESPTEPKW 308 (732)
Q Consensus 236 ~~~lt~~~~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~------~~~~~~~~~~~~~~~~w 308 (732)
...++.... ...-..++-+|..+ +.. +. ....++.... +|++..... .+..+ .-..++....|
T Consensus 225 ~~~~~~~e~~~~~~~~~~~~~~~~-~~g-~~------e~~~~~~~~~-sgKVv~~~n~~~~~l~~~~e-~~~esve~~~~ 294 (399)
T KOG0296|consen 225 LHKITQAEGLELPCISLNLAGSTL-TKG-NS------EGVACGVNNG-SGKVVNCNNGTVPELKPSQE-ELDESVESIPS 294 (399)
T ss_pred eEEecccccCcCCcccccccccee-Eec-cC------CccEEEEccc-cceEEEecCCCCccccccch-hhhhhhhhccc
Confidence 233332221 11122445566543 332 21 2224555544 555421111 11111 10133444555
Q ss_pred CCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 309 spDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|.+=.|...... . ..|.++|.+..+.|.+...+..+....|. + ...++++.-+|. |+..|.
T Consensus 295 ss~lpL~A~G~v-d--G~i~iyD~a~~~~R~~c~he~~V~~l~w~-------------~-t~~l~t~c~~g~--v~~wDa 355 (399)
T KOG0296|consen 295 SSKLPLAACGSV-D--GTIAIYDLAASTLRHICEHEDGVTKLKWL-------------N-TDYLLTACANGK--VRQWDA 355 (399)
T ss_pred ccccchhhcccc-c--ceEEEEecccchhheeccCCCceEEEEEc-------------C-cchheeeccCce--EEeeec
Confidence 544223333322 2 35777888888888888665555555554 3 334445555554 555577
Q ss_pred CCCceE-EeccCCCceEEe-eEeCCEEEEEEeC
Q 004735 389 FGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 389 ~~~~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~ 419 (732)
.+|++. ..+.....|..+ ...++++++..+.
T Consensus 356 RtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 356 RTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred cccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 788765 455566777777 4556666655543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00069 Score=73.83 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=87.1
Q ss_pred EECCEEEEEeCCC-C--eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 152 IFGDTVIFSNYKD-Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 152 ~~~~~i~f~~~~~-~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
+++...+|..... + +||..|-. .|.++-.+. -....-..|+|+..+++--+.+ ..+-.+|.
T Consensus 501 F~P~GyYFatas~D~tArLWs~d~~----~PlRifagh---lsDV~cv~FHPNs~Y~aTGSsD---------~tVRlWDv 564 (707)
T KOG0263|consen 501 FAPRGYYFATASHDQTARLWSTDHN----KPLRIFAGH---LSDVDCVSFHPNSNYVATGSSD---------RTVRLWDV 564 (707)
T ss_pred ecCCceEEEecCCCceeeeeecccC----Cchhhhccc---ccccceEEECCcccccccCCCC---------ceEEEEEc
Confidence 3344566654432 2 67777653 344444331 1122336799999875443322 35555688
Q ss_pred CCCCccccEEcccC-CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 229 NGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 229 ~~~~~~~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
.+|. ..++..| ...+...++||+|++|+-.+ . ...|.++|+. +|+. +..+.+.. ..+..+.
T Consensus 565 ~~G~---~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--e------d~~I~iWDl~-~~~~--v~~l~~Ht----~ti~Sls 626 (707)
T KOG0263|consen 565 STGN---SVRIFTGHKGPVTALAFSPCGRYLASGD--E------DGLIKIWDLA-NGSL--VKQLKGHT----GTIYSLS 626 (707)
T ss_pred CCCc---EEEEecCCCCceEEEEEcCCCceEeecc--c------CCcEEEEEcC-CCcc--hhhhhccc----CceeEEE
Confidence 8887 6666544 45667789999999997544 2 3348999998 7765 45555554 6788999
Q ss_pred eCCCCcEEEEEeccCCeeeEE
Q 004735 308 WSSKGELFFVTDRKNGFWNLH 328 (732)
Q Consensus 308 wspDg~l~~~~~~~~g~~~l~ 328 (732)
||.||.++.+... ...-+||
T Consensus 627 FS~dg~vLasgg~-DnsV~lW 646 (707)
T KOG0263|consen 627 FSRDGNVLASGGA-DNSVRLW 646 (707)
T ss_pred EecCCCEEEecCC-CCeEEEE
Confidence 9999985544332 3333444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0033 Score=59.92 Aligned_cols=182 Identities=12% Similarity=0.097 Sum_probs=105.8
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
.-+..|+|...-++++.... ..|.++|...++ ...-+....-.....|||||+++++...+
T Consensus 67 vdql~w~~~~~d~~atas~d--------k~ir~wd~r~~k---~~~~i~~~~eni~i~wsp~g~~~~~~~kd-------- 127 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGD--------KTIRIWDIRSGK---CTARIETKGENINITWSPDGEYIAVGNKD-------- 127 (313)
T ss_pred hhhheeCCCCCcceEEecCC--------ceEEEEEeccCc---EEEEeeccCcceEEEEcCCCCEEEEecCc--------
Confidence 45577888766556654422 477888888877 55554444334567899999999987622
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCce
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 352 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 352 (732)
..|-.+|.. +-++.... ... .......|.-++.++|.++. .|.-+|..+. .++++...+. .|.
T Consensus 128 D~it~id~r-~~~~~~~~---~~~----~e~ne~~w~~~nd~Fflt~G-lG~v~ILsyp----sLkpv~si~A---H~s- 190 (313)
T KOG1407|consen 128 DRITFIDAR-TYKIVNEE---QFK----FEVNEISWNNSNDLFFLTNG-LGCVEILSYP----SLKPVQSIKA---HPS- 190 (313)
T ss_pred ccEEEEEec-ccceeehh---ccc----ceeeeeeecCCCCEEEEecC-CceEEEEecc----cccccccccc---CCc-
Confidence 236677765 22221111 111 33457788866668888876 7877777664 2333332221 110
Q ss_pred eecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC-CceEEeccCCCceEEee-EeCCEEEEEEe
Q 004735 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HSLSLLDIPFTDIDNIT-LGNDCLFVEGA 418 (732)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~-~~~~~lt~~~~~v~~~~-~~~~~~~~~~~ 418 (732)
.--.+.|.| +|+++...+ .+....|| |++. --+|.++.-+|.|..++ +-+++++..++
T Consensus 191 --nCicI~f~p---~GryfA~Gs-ADAlvSLW--D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 191 --NCICIEFDP---DGRYFATGS-ADALVSLW--DVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred --ceEEEEECC---CCceEeecc-ccceeecc--ChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 111223443 777766554 34555566 4332 23577888899999884 44566655444
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.049 Score=64.60 Aligned_cols=140 Identities=6% Similarity=0.025 Sum_probs=81.2
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
...+++...++.|.++|+.+ +. ...+... ........|+| +|+.|+.... + ..|.++|+.++.
T Consensus 545 ~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~-D--------g~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVAR--SQLVTEMKEH----EKRVWSIDYSSADPTLLASGSD-D--------GSVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCCCeEEEEECCC--CeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcC-C--------CEEEEEECCCCc
Confidence 34556666788899999986 43 2333332 33456778997 6776444433 2 578888988765
Q ss_pred ccccEEcccCCCceecccc-CCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRM-DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~-SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
...............| +++|..|+..+ ....|+++|+. +++. ....+.+.. ..+..+.|. |
T Consensus 610 ---~~~~~~~~~~v~~v~~~~~~g~~latgs--------~dg~I~iwD~~-~~~~-~~~~~~~h~----~~V~~v~f~-~ 671 (793)
T PLN00181 610 ---SIGTIKTKANICCVQFPSESGRSLAFGS--------ADHKVYYYDLR-NPKL-PLCTMIGHS----KTVSYVRFV-D 671 (793)
T ss_pred ---EEEEEecCCCeEEEEEeCCCCCEEEEEe--------CCCeEEEEECC-CCCc-cceEecCCC----CCEEEEEEe-C
Confidence 3222222223344556 56898887765 23459999987 4432 123334443 456678886 6
Q ss_pred CcEEEEEeccCCeeeEE
Q 004735 312 GELFFVTDRKNGFWNLH 328 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~ 328 (732)
+..+++... .+.-.||
T Consensus 672 ~~~lvs~s~-D~~ikiW 687 (793)
T PLN00181 672 SSTLVSSST-DNTLKLW 687 (793)
T ss_pred CCEEEEEEC-CCEEEEE
Confidence 664444443 4554444
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0058 Score=60.08 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=57.5
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
.++...+||+|...+.+.++ .=-..||++|+..-+...+......+....|.|+ .-++++. .|.
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd-~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~------------~prL~vc---tg~ 382 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRND-KYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG------------RPRLVVC---TGK 382 (447)
T ss_pred cccceeeecCCceEEeeecC-CCCceEEEEechhhhhhhhhhhccceeEEEeCCC------------CceEEEE---cCC
Confidence 56777899999864444444 3345689999988776655544444455667763 2234433 255
Q ss_pred EEEEEEECCCCceEEeccCCCceEEe
Q 004735 381 SYLGILDDFGHSLSLLDIPFTDIDNI 406 (732)
Q Consensus 381 ~~ly~~~~~~~~~~~lt~~~~~v~~~ 406 (732)
.+||...+.+-....+......+..+
T Consensus 383 srLY~W~psg~~~V~vP~~GF~i~~l 408 (447)
T KOG4497|consen 383 SRLYFWAPSGPRVVGVPKKGFNIQKL 408 (447)
T ss_pred ceEEEEcCCCceEEecCCCCceeeeE
Confidence 78999988876656666555666666
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0079 Score=58.27 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=89.7
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+..++|.+...+-.+++|.++. .++..++...+ .-.|+...|||||++|+.+..+. +.. ...|=++|...+
T Consensus 80 ~ravafARrPGtf~~vfD~~~~-~~pv~~~s~~~--RHfyGHGvfs~dG~~LYATEndf-d~~---rGViGvYd~r~~-- 150 (366)
T COG3490 80 PRAVAFARRPGTFAMVFDPNGA-QEPVTLVSQEG--RHFYGHGVFSPDGRLLYATENDF-DPN---RGVIGVYDAREG-- 150 (366)
T ss_pred cceEEEEecCCceEEEECCCCC-cCcEEEecccC--ceeecccccCCCCcEEEeecCCC-CCC---CceEEEEecccc--
Confidence 3367777766667788999863 44555544321 23457789999999866654433 221 356666776532
Q ss_pred cccEEcccCCCcee---ccccCCCCCeEEEEec---cCCCC---CC----CccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 234 QEPKVLVSGSDFYA---FPRMDPRGERMAWIEW---HHPNM---PW----DKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 234 ~~~~~lt~~~~~~~---~p~~SPDG~~la~~~~---~~~~~---~~----~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
-.++.+-+.+-. ...|.+||+.|+.... .++.. +. -...|.++|.. +|++-+...++.....
T Consensus 151 --fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a-tG~liekh~Lp~~l~~-- 225 (366)
T COG3490 151 --FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA-TGNLIEKHTLPASLRQ-- 225 (366)
T ss_pred --cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc-ccchhhhccCchhhhh--
Confidence 233332222222 3479999999987653 22110 00 12346677765 6776555555533212
Q ss_pred ccCcCceeCCCCcEEEEEec
Q 004735 301 ESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~ 320 (732)
.++..+...+||+++|-.+.
T Consensus 226 lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cceeeeeeCCCCcEEEEEEe
Confidence 56777888999998776665
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00041 Score=67.91 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHH--------HHCCCEEEEEcCCCCCC--CChhhHHhhccCCCcccHHHHHHHHHH
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYW--------TSRGWAFVDVNYGGSTG--YGREFRERLLGRWGIVDVNDCCSCATF 564 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l--------~~~G~~v~~~d~rG~~g--~g~~~~~~~~~~~~~~~~~D~~~~i~~ 564 (732)
...|||+||..++. ..++.....+ ....+.++.+||..... +|.... ...+-+..+++.
T Consensus 4 g~pVlFIhG~~Gs~--~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l~---------~q~~~~~~~i~~ 72 (225)
T PF07819_consen 4 GIPVLFIHGNAGSY--KQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTLQ---------RQAEFLAEAIKY 72 (225)
T ss_pred CCEEEEECcCCCCH--hHHHHHHHHHhhhhhhccCccceeEEEeccCccccccccccHH---------HHHHHHHHHHHH
Confidence 36799999964332 2222222222 12257899999864221 121111 113445566666
Q ss_pred HHhcC---CCCCCcEEEEEcChHHHHHHHHHhC----CCcceEEEeecC
Q 004735 565 LVGSG---KADEKRLCITGGSAGGYTTLAALAF----RDTFKAGASLYG 606 (732)
Q Consensus 565 l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~~----p~~~~a~v~~~~ 606 (732)
+.+.. ...+++|.|+||||||.++-.++.. ++.++.+|.++.
T Consensus 73 i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~t 121 (225)
T PF07819_consen 73 ILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGT 121 (225)
T ss_pred HHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcC
Confidence 66553 4467899999999999999888762 346777776653
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00087 Score=71.01 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=65.6
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
..|-++|+.+++. ...|....+.+.+.+|||||++||-+. ....|.|+... .++. .+....+.. +
T Consensus 700 ~Ti~lWDl~~~~~--~~~l~gHtdqIf~~AWSpdGr~~AtVc--------KDg~~rVy~Pr-s~e~-pv~Eg~gpv-g-- 764 (1012)
T KOG1445|consen 700 STIELWDLANAKL--YSRLVGHTDQIFGIAWSPDGRRIATVC--------KDGTLRVYEPR-SREQ-PVYEGKGPV-G-- 764 (1012)
T ss_pred ceeeeeehhhhhh--hheeccCcCceeEEEECCCCcceeeee--------cCceEEEeCCC-CCCC-ccccCCCCc-c--
Confidence 5777889988651 334555567778899999999999887 34568888876 4432 122111111 1
Q ss_pred ccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEe
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l 340 (732)
..-.++.|.-||+ ++++.-++....+|-.+|.++-..+.|
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl 805 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPL 805 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcc
Confidence 2345788999999 555544434455666666655433333
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.003 Score=65.28 Aligned_cols=228 Identities=10% Similarity=0.041 Sum_probs=132.7
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCc---eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
+-+|.- ..+-|-++|+... +.. .+|..- +.+.......++|||+.|+.-.+ ...|-++|++.-.
T Consensus 432 rhVyTg-GkgcVKVWdis~p-g~k~PvsqLdcl--~rdnyiRSckL~pdgrtLivGGe---------astlsiWDLAapT 498 (705)
T KOG0639|consen 432 RHVYTG-GKGCVKVWDISQP-GNKSPVSQLDCL--NRDNYIRSCKLLPDGRTLIVGGE---------ASTLSIWDLAAPT 498 (705)
T ss_pred ceeEec-CCCeEEEeeccCC-CCCCcccccccc--CcccceeeeEecCCCceEEeccc---------cceeeeeeccCCC
Confidence 445553 3456778888642 221 222221 12344566779999999766433 2678888988754
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.+--.+|+...-.....+.|||.+ ++|....+.+ |.|+|+. +..+ ++.+.+.. .+..-+..++||
T Consensus 499 prikaeltssapaCyALa~spDak-vcFsccsdGn-------I~vwDLh-nq~~--VrqfqGht----DGascIdis~dG 563 (705)
T KOG0639|consen 499 PRIKAELTSSAPACYALAISPDAK-VCFSCCSDGN-------IAVWDLH-NQTL--VRQFQGHT----DGASCIDISKDG 563 (705)
T ss_pred cchhhhcCCcchhhhhhhcCCccc-eeeeeccCCc-------EEEEEcc-ccee--eecccCCC----CCceeEEecCCC
Confidence 100123444333334578999976 8888755433 8999998 5544 66677664 566778889999
Q ss_pred cEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 313 ~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
.-+|+..- ...+..+|+..+. ++. +.+|..-.++.+.. | .+.++++.-+ + .+++++...+.+
T Consensus 564 tklWTGGl---DntvRcWDlregr--qlq--qhdF~SQIfSLg~c-----P---~~dWlavGMe-n--s~vevlh~skp~ 625 (705)
T KOG0639|consen 564 TKLWTGGL---DNTVRCWDLREGR--QLQ--QHDFSSQIFSLGYC-----P---TGDWLAVGME-N--SNVEVLHTSKPE 625 (705)
T ss_pred ceeecCCC---ccceeehhhhhhh--hhh--hhhhhhhheecccC-----C---Cccceeeecc-c--CcEEEEecCCcc
Confidence 84444322 2346667776543 332 22344444443322 1 5566665443 2 456677777777
Q ss_pred eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 393 LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 393 ~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
.-+|...+..|-.+ ...-+++ |+..+.++....|+..
T Consensus 626 kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTP 663 (705)
T ss_pred ceeecccccEEEEEEecccCce-eeecCchhhhhhccCc
Confidence 77888887777777 3444444 4444556566666654
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00051 Score=77.42 Aligned_cols=98 Identities=11% Similarity=0.205 Sum_probs=65.9
Q ss_pred CEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc-ccCCCceeccccCCCCCeEEE-EeccCCCCCCCccEEEEEEe
Q 004735 203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAW-IEWHHPNMPWDKAELWVGYI 280 (732)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-t~~~~~~~~p~~SPDG~~la~-~~~~~~~~~~~~~~l~v~d~ 280 (732)
.+|+|+.+.. .+|.++|.++.. ++.+ +........|+|||||++||| ++...-. ....||+.++
T Consensus 319 tkiAfv~~~~--------~~L~~~D~dG~n---~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~---g~s~vYv~~L 384 (912)
T TIGR02171 319 AKLAFRNDVT--------GNLAYIDYTKGA---SRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLP---GKSSVYVRNL 384 (912)
T ss_pred eeEEEEEcCC--------CeEEEEecCCCC---ceEEEecCCCceecCcCCCCCCEEEEEEeecCCC---CCceEEEEeh
Confidence 3577876522 489999999988 8878 777777889999999999999 6543311 2566999999
Q ss_pred cCCCceeeeEEecCCCCCccccCcCceeCCCCc--EEEEEec
Q 004735 281 SENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDR 320 (732)
Q Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~--l~~~~~~ 320 (732)
..+|. ..+++-.+ . ..+.+.+...+|. |+|+++.
T Consensus 385 ~t~~~-~~vkl~ve-~----aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 385 NASGS-GLVKLPVE-N----AAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred hccCC-CceEeecc-c----ccccceEecCCCCeEEEEEcCC
Confidence 84442 21232222 2 3344444467776 8888765
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00025 Score=62.79 Aligned_cols=118 Identities=16% Similarity=0.281 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhh
Q 004735 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYY 636 (732)
Q Consensus 558 ~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (732)
..+.-.|++++- -+.+..+-|.||||+.++...- ||+++..+|+.+|++|.+.+... ..++...|
T Consensus 87 H~AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~-----------yyddDv~y- 152 (227)
T COG4947 87 HRAYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGG-----------YYDDDVYY- 152 (227)
T ss_pred HHHHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccc-----------cccCceee-
Confidence 344455777662 2467889999999999998887 99999999999999998754332 22222223
Q ss_pred hcCccccCCCCCC----------CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 637 EKSPINFVDKFSC----------PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 637 ~~sp~~~~~~i~~----------P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.+|..++..+.+ .+.+.+|.+|+..+ +.+.+-+.|..+.++..+.+..+-.|.
T Consensus 153 -nsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaHd 215 (227)
T COG4947 153 -NSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAHD 215 (227)
T ss_pred -cChhhhccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhcccccc
Confidence 667666665543 46777888887754 456677788877777666666665564
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.069 Score=57.81 Aligned_cols=168 Identities=13% Similarity=0.141 Sum_probs=95.5
Q ss_pred ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEE
Q 004735 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (732)
Q Consensus 240 t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~ 318 (732)
+.+......-+.||||++|++..-. ...||....+ +.++... ..... .-........++-|+. +++.+
T Consensus 379 ~k~~~nIs~~aiSPdg~~Ia~st~~-------~~~iy~L~~~--~~vk~~~-v~~~~-~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 379 TKEKENISCAAISPDGNLIAISTVS-------RTKIYRLQPD--PNVKVIN-VDDVP-LALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred cCCccceeeeccCCCCCEEEEeecc-------ceEEEEeccC--cceeEEE-eccch-hhhccceeeEEEecCceEEEEe
Confidence 3455666777899999999987622 2335555443 4332222 22111 0003445677888888 66555
Q ss_pred eccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec-
Q 004735 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD- 397 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt- 397 (732)
.. ...|..+++++...+.+...... .-.+..+.+..++ +|++|+..+ ....|+++++.+++.+.|.
T Consensus 448 ~~---~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~Ss---dG~yiaa~~---t~g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 448 KN---IFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSS---DGNYIAAIS---TRGQIFVYNLETLESHLLKV 514 (691)
T ss_pred cc---cceeEEEEecCcchhhhhccccc----cCCCcceeEEEcC---CCCEEEEEe---ccceEEEEEcccceeecchh
Confidence 33 34566666666655544422111 1112333444444 888888776 4467888899999888776
Q ss_pred cCCCceEEe--e-EeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 398 IPFTDIDNI--T-LGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 398 ~~~~~v~~~--~-~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
..+..++.. . ...+++++..++ .++|.+|++..+
T Consensus 515 rln~~vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~ 551 (691)
T KOG2048|consen 515 RLNIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN 551 (691)
T ss_pred ccCcceeeeeccccccCcEEEEecC----CeEEEEecchhh
Confidence 334555555 2 233455555543 479999984433
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.018 Score=60.07 Aligned_cols=241 Identities=13% Similarity=0.058 Sum_probs=123.3
Q ss_pred EEeCCCCeEEEEeCCCCC---CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 159 FSNYKDQRLYKHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 159 f~~~~~~~l~~~d~~~~~---~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
++...+..+-.+|+++-+ ..-++|.+.+ .......+|||.|.+|+++... .+.-++|.+|.+
T Consensus 183 ~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E---~h~i~sl~ys~Tg~~iLvvsg~---------aqakl~DRdG~~--- 247 (641)
T KOG0772|consen 183 VSGSLDYTVKFWDFQGMDASMRSFRQLQPCE---THQINSLQYSVTGDQILVVSGS---------AQAKLLDRDGFE--- 247 (641)
T ss_pred eeccccceEEEEecccccccchhhhccCccc---ccccceeeecCCCCeEEEEecC---------cceeEEccCCce---
Confidence 344445577888887511 1246676652 3445778899999999988763 466677777654
Q ss_pred cEEcccCC----------Cce---eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC-Cccc
Q 004735 236 PKVLVSGS----------DFY---AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-TIVE 301 (732)
Q Consensus 236 ~~~lt~~~----------~~~---~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~-~~~~ 301 (732)
......|. ++. ..-+|.|+.+..+.....+ ..|.++|++ +-+ .++.++..... ....
T Consensus 248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D-------gtlRiWdv~-~~k-~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 248 IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD-------GTLRIWDVN-NTK-SQLQVIKTKPAGGKRV 318 (641)
T ss_pred eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC-------CcEEEEecC-Cch-hheeEEeeccCCCccc
Confidence 22222221 222 2348999999886555332 337777776 322 12222221110 1014
Q ss_pred cCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
.+....|++||+++..... .|..++|-..-.+-...-.... +...+ .++..+.|+. +|+.|+ +...++.-
T Consensus 319 ~~tsC~~nrdg~~iAagc~-DGSIQ~W~~~~~~v~p~~~vk~-AH~~g----~~Itsi~FS~---dg~~Ll-SRg~D~tL 388 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCL-DGSIQIWDKGSRTVRPVMKVKD-AHLPG----QDITSISFSY---DGNYLL-SRGFDDTL 388 (641)
T ss_pred CceeeecCCCcchhhhccc-CCceeeeecCCcccccceEeee-ccCCC----CceeEEEecc---ccchhh-hccCCCce
Confidence 5667889999995444444 5777777542111111111111 11000 1234455654 666544 44445556
Q ss_pred EEEEEECCCCceE---EeccCCCceEEeeEeCCEEEEEEeCC---CCCcEEEEEEcCC
Q 004735 382 YLGILDDFGHSLS---LLDIPFTDIDNITLGNDCLFVEGASG---VEPSSVAKVTLDD 433 (732)
Q Consensus 382 ~ly~~~~~~~~~~---~lt~~~~~v~~~~~~~~~~~~~~~~~---~~~~~ly~~dl~~ 433 (732)
.+|-++.-...+. -|......-....+++.++++.+++. .++..|+.+|..+
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 6665542222111 11111111122255677788777643 2334588887554
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.066 Score=51.87 Aligned_cols=202 Identities=11% Similarity=0.016 Sum_probs=101.6
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCccc-CCCCCcccccccccCCceeEEECC-EEEEEeCCCCeE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l-~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l 167 (732)
.+..++.+|.+.|||..... -.|=+.++.+| +...+ +..+......+ ...| ...+.+ ....|
T Consensus 63 ap~dvapapdG~VWft~qg~-----gaiGhLdP~tG-ev~~ypLg~Ga~Phgiv---------~gpdg~~Witd-~~~aI 126 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGT-----GAIGHLDPATG-EVETYPLGSGASPHGIV---------VGPDGSAWITD-TGLAI 126 (353)
T ss_pred CccccccCCCCceEEecCcc-----ccceecCCCCC-ceEEEecCCCCCCceEE---------ECCCCCeeEec-Cccee
Confidence 44556656567799987533 35667788876 33222 22221111111 2222 233333 22267
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC-ce
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-FY 246 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~-~~ 246 (732)
-++|.++ .+.++.+-...-.......+.|+++|+. .|+....- -=++|...+. ++......+ --
T Consensus 127 ~R~dpkt--~evt~f~lp~~~a~~nlet~vfD~~G~l-WFt~q~G~---------yGrLdPa~~~---i~vfpaPqG~gp 191 (353)
T COG4257 127 GRLDPKT--LEVTRFPLPLEHADANLETAVFDPWGNL-WFTGQIGA---------YGRLDPARNV---ISVFPAPQGGGP 191 (353)
T ss_pred EEecCcc--cceEEeecccccCCCcccceeeCCCccE-EEeecccc---------ceecCcccCc---eeeeccCCCCCC
Confidence 7888776 5555443221112334567889999984 66654221 1134554443 332221111 12
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC-CCCcEEEEEeccCCee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-SKGELFFVTDRKNGFW 325 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws-pDg~l~~~~~~~~g~~ 325 (732)
++.+..|||+ +.|.+.. .+.|-.+|.. +|... +...++.. ..-.+=.|+ |.|++ +++. .+..
T Consensus 192 yGi~atpdGs-vwyasla-------gnaiaridp~-~~~ae-v~p~P~~~----~~gsRriwsdpig~~-witt--wg~g 254 (353)
T COG4257 192 YGICATPDGS-VWYASLA-------GNAIARIDPF-AGHAE-VVPQPNAL----KAGSRRIWSDPIGRA-WITT--WGTG 254 (353)
T ss_pred cceEECCCCc-EEEEecc-------ccceEEcccc-cCCcc-eecCCCcc----cccccccccCccCcE-EEec--cCCc
Confidence 4567899998 7777632 3347777766 55332 11112210 111233453 44544 4443 4667
Q ss_pred eEEEEeccCCeEEE
Q 004735 326 NLHKWIESNNEVLA 339 (732)
Q Consensus 326 ~l~~~d~~~g~~~~ 339 (732)
.++++|+.+...+.
T Consensus 255 ~l~rfdPs~~sW~e 268 (353)
T COG4257 255 SLHRFDPSVTSWIE 268 (353)
T ss_pred eeeEeCccccccee
Confidence 89999998766543
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00022 Score=48.15 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=26.4
Q ss_pred EEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEE
Q 004735 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV 277 (732)
Q Consensus 237 ~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v 277 (732)
++++........|.|||||++|+|++.... ....+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~---~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND---RGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT-----SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCC---CCCcCEEC
Confidence 467777778889999999999999994442 13455764
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.025 Score=58.39 Aligned_cols=214 Identities=11% Similarity=0.062 Sum_probs=110.9
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEEe
Q 004735 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (732)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d 171 (732)
-.++|. ++.-|-+...- +++..+|-...+ +..+.++. ++-.+....|.++.-+.+...++.|+++-
T Consensus 280 ~slKWn-k~G~yilS~~v--D~ttilwd~~~g---~~~q~f~~--------~s~~~lDVdW~~~~~F~ts~td~~i~V~k 345 (524)
T KOG0273|consen 280 FSLKWN-KKGTYILSGGV--DGTTILWDAHTG---TVKQQFEF--------HSAPALDVDWQSNDEFATSSTDGCIHVCK 345 (524)
T ss_pred EEEEEc-CCCCEEEeccC--CccEEEEeccCc---eEEEeeee--------ccCCccceEEecCceEeecCCCceEEEEE
Confidence 577888 55444444332 466555544322 33333321 22222334444443344445667788777
Q ss_pred CCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccc
Q 004735 172 IDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPR 250 (732)
Q Consensus 172 ~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~ 250 (732)
+.. ..| ..+... ........|.|.|+.|+-.+++. .-.||-+.-+ +. ...|-.....+....
T Consensus 346 v~~--~~P~~t~~GH----~g~V~alk~n~tg~LLaS~SdD~-------TlkiWs~~~~-~~---~~~l~~Hskei~t~~ 408 (524)
T KOG0273|consen 346 VGE--DRPVKTFIGH----HGEVNALKWNPTGSLLASCSDDG-------TLKIWSMGQS-NS---VHDLQAHSKEIYTIK 408 (524)
T ss_pred ecC--CCcceeeecc----cCceEEEEECCCCceEEEecCCC-------eeEeeecCCC-cc---hhhhhhhccceeeEe
Confidence 764 333 233332 44567778999999755444432 2344433221 22 233332233344578
Q ss_pred cCCCCC---------eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 251 MDPRGE---------RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 251 ~SPDG~---------~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
|||+|. .|+..+ ..+.+.++|+. .|.. +..+.... ..+..+++||||+.+...+.
T Consensus 409 wsp~g~v~~n~~~~~~l~sas--------~dstV~lwdv~-~gv~--i~~f~kH~----~pVysvafS~~g~ylAsGs~- 472 (524)
T KOG0273|consen 409 WSPTGPVTSNPNMNLMLASAS--------FDSTVKLWDVE-SGVP--IHTLMKHQ----EPVYSVAFSPNGRYLASGSL- 472 (524)
T ss_pred ecCCCCccCCCcCCceEEEee--------cCCeEEEEEcc-CCce--eEeeccCC----CceEEEEecCCCcEEEecCC-
Confidence 888876 233332 23457788888 6754 44454443 66889999999994444444
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceee
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 354 (732)
.|. +..++..+++.-+-..+...+....|..
T Consensus 473 dg~--V~iws~~~~~l~~s~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 473 DGC--VHIWSTKTGKLVKSYQGTGGIFELCWNA 503 (524)
T ss_pred CCe--eEeccccchheeEeecCCCeEEEEEEcC
Confidence 454 4445566665443333332333345553
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.004 Score=69.28 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=85.8
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+..+++.. .+..|-++++.+. +..+.+-.. ........++|+|++|+.++-+ ..++++++..+..
T Consensus 108 g~~iaags-dD~~vK~~~~~D~-s~~~~lrgh----~apVl~l~~~p~~~fLAvss~d---------G~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 108 GKMIAAGS-DDTAVKLLNLDDS-SQEKVLRGH----DAPVLQLSYDPKGNFLAVSSCD---------GKVQIWDLQDGIL 172 (933)
T ss_pred CcEEEeec-CceeEEEEecccc-chheeeccc----CCceeeeeEcCCCCEEEEEecC---------ceEEEEEcccchh
Confidence 33555443 3445777777652 334444433 3345667899999998777652 5889999988751
Q ss_pred cccEEcc---cC-----CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 234 QEPKVLV---SG-----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 234 ~~~~~lt---~~-----~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
...|+ .. ......|+|+|||.++++...+ ..+-+++.+ +.+.. -.+....-. ..+..
T Consensus 173 --~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--------~~Vkvy~r~-~we~~--f~Lr~~~~s--s~~~~ 237 (933)
T KOG1274|consen 173 --SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD--------NTVKVYSRK-GWELQ--FKLRDKLSS--SKFSD 237 (933)
T ss_pred --hhhcccCCccccccccceeeeeeecCCCCeEEeeccC--------CeEEEEccC-Cceeh--eeecccccc--cceEE
Confidence 11222 11 2345679999998888887633 337777766 55432 222222101 23667
Q ss_pred ceeCCCCc-EEEEEeccCCeeeEEEEeccC
Q 004735 306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 306 ~~wspDg~-l~~~~~~~~g~~~l~~~d~~~ 334 (732)
.+|||.|+ |+. +.. .|+ |.++|.++
T Consensus 238 ~~wsPnG~YiAA-s~~-~g~--I~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGKYIAA-STL-DGQ--ILVWNVDT 263 (933)
T ss_pred EEEcCCCcEEee-ecc-CCc--EEEEeccc
Confidence 89999998 543 333 344 44455553
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.022 Score=61.06 Aligned_cols=250 Identities=8% Similarity=0.026 Sum_probs=135.9
Q ss_pred EEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE--CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEe
Q 004735 116 VLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSY 193 (732)
Q Consensus 116 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~--~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~ 193 (732)
.+|.++..+| ....+.... ++...++.++ ++.|+ +-..++.+.++|.... ...+.+... +..+.
T Consensus 198 ~vylW~~~s~-~v~~l~~~~--------~~~vtSv~ws~~G~~La-vG~~~g~v~iwD~~~~-k~~~~~~~~---h~~rv 263 (484)
T KOG0305|consen 198 SVYLWSASSG-SVTELCSFG--------EELVTSVKWSPDGSHLA-VGTSDGTVQIWDVKEQ-KKTRTLRGS---HASRV 263 (484)
T ss_pred eEEEEecCCC-ceEEeEecC--------CCceEEEEECCCCCEEE-EeecCCeEEEEehhhc-cccccccCC---cCcee
Confidence 3555555443 444444321 2234455554 33444 4445678999998752 334444441 25677
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
+..+|. +.. +-..... ..|...|+...+.. .+.+......+.+..|++||+++|--. +.+
T Consensus 264 g~laW~--~~~-lssGsr~--------~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGg--------nDN 323 (484)
T KOG0305|consen 264 GSLAWN--SSV-LSSGSRD--------GKILNHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGG--------NDN 323 (484)
T ss_pred EEEecc--Cce-EEEecCC--------CcEEEEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCC--------Ccc
Confidence 888887 332 2222211 45666666654310 121333334567889999999887332 345
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCce
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 352 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 352 (732)
.++++|.. +-+. ...+.+.. ..+-.++|+|=-+ |+.+... .....|..+|..+|+...-..-...+....|
T Consensus 324 ~~~Iwd~~-~~~p--~~~~~~H~----aAVKA~awcP~q~~lLAsGGG-s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~W 395 (484)
T KOG0305|consen 324 VVFIWDGL-SPEP--KFTFTEHT----AAVKALAWCPWQSGLLATGGG-SADRCIKFWNTNTGARIDSVDTGSQVCSLIW 395 (484)
T ss_pred ceEeccCC-Cccc--cEEEeccc----eeeeEeeeCCCccCceEEcCC-CcccEEEEEEcCCCcEecccccCCceeeEEE
Confidence 58888874 2222 33344443 5667889999655 7666544 4556777788877765443333334455666
Q ss_pred eecccceeeeeecCCCCEEEEEEE-ECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCC
Q 004735 353 VFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASG 420 (732)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~s~-~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~ 420 (732)
++ ..+.|+.+.. ..+.-.||.+.. -+.+..++.....|-.+ ..+++..++.+++.
T Consensus 396 sk------------~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 396 SK------------KYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred cC------------CCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 65 5555665542 334456777753 23344555555555555 34555555555443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0087 Score=67.90 Aligned_cols=123 Identities=17% Similarity=0.041 Sum_probs=71.0
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
.....|..||||+.+++-+.-+ +.|.+++..+.+. .+.+-.....+-+..|.|=|+++|-.+.|+
T Consensus 129 ~~DV~Dv~Wsp~~~~lvS~s~D---------nsViiwn~~tF~~--~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr---- 193 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDSLLVSVSLD---------NSVIIWNAKTFEL--LKVLRGHQSLVKGVSWDPIGKYFASQSDDR---- 193 (942)
T ss_pred CCccceeccCCCccEEEEeccc---------ceEEEEcccccee--eeeeecccccccceEECCccCeeeeecCCc----
Confidence 3445788999999976655442 5777888777551 444555566778899999999998776333
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEec
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~ 332 (732)
.|-++.+..-|-.+.++-..+.- .-.....++.|||||+ |........+...+-+++-
T Consensus 194 ----tikvwrt~dw~i~k~It~pf~~~-~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 194 ----TLKVWRTSDWGIEKSITKPFEES-PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred ----eEEEEEcccceeeEeeccchhhC-CCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 35555544112221111111110 0003467899999999 5433222133334444443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=63.87 Aligned_cols=141 Identities=10% Similarity=0.143 Sum_probs=86.0
Q ss_pred eeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEE
Q 004735 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 275 (732)
Q Consensus 196 ~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l 275 (732)
..|||+|++|+.... .+|.+-|..+-+ +.+|..--+.+....|+.|..+|......+ ..+
T Consensus 14 c~fSp~g~yiAs~~~----------yrlviRd~~tlq---~~qlf~cldki~yieW~ads~~ilC~~yk~-------~~v 73 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR----------YRLVIRDSETLQ---LHQLFLCLDKIVYIEWKADSCHILCVAYKD-------PKV 73 (447)
T ss_pred eeECCCCCeeeeeee----------eEEEEeccchhh---HHHHHHHHHHhhheeeeccceeeeeeeecc-------ceE
Confidence 359999999766544 577777777666 555554445566789999999988776433 237
Q ss_pred EEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceee
Q 004735 276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 276 ~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 354 (732)
.+.++. --+. .-.+.... .++....|||||+ |+..+.- + -+|-++.+.+.+.-.|...+...
T Consensus 74 qvwsl~-Qpew--~ckIdeg~----agls~~~WSPdgrhiL~tseF-~--lriTVWSL~t~~~~~~~~pK~~~------- 136 (447)
T KOG4497|consen 74 QVWSLV-QPEW--YCKIDEGQ----AGLSSISWSPDGRHILLTSEF-D--LRITVWSLNTQKGYLLPHPKTNV------- 136 (447)
T ss_pred EEEEee-ccee--EEEeccCC----CcceeeeECCCcceEeeeecc-e--eEEEEEEeccceeEEecccccCc-------
Confidence 777876 2332 22233333 5678899999999 7766554 2 34555555555444443222122
Q ss_pred cccceeeeeecCCCCEEEEEEEEC
Q 004735 355 GINSYEIIQSHGEKNLIACSYRQN 378 (732)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~~s~~~ 378 (732)
..+.|.+ +++...+.++++
T Consensus 137 --kg~~f~~---dg~f~ai~sRrD 155 (447)
T KOG4497|consen 137 --KGYAFHP---DGQFCAILSRRD 155 (447)
T ss_pred --eeEEECC---CCceeeeeeccc
Confidence 2344443 677666666654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.031 Score=53.54 Aligned_cols=212 Identities=7% Similarity=-0.080 Sum_probs=106.2
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++++...+..|-++|... +++..-+... ..-....|||||+++++...+ ..|-.+|..+-+
T Consensus 78 d~~atas~dk~ir~wd~r~--~k~~~~i~~~----~eni~i~wsp~g~~~~~~~kd---------D~it~id~r~~~--- 139 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRS--GKCTARIETK----GENINITWSPDGEYIAVGNKD---------DRITFIDARTYK--- 139 (313)
T ss_pred cceEEecCCceEEEEEecc--CcEEEEeecc----CcceEEEEcCCCCEEEEecCc---------ccEEEEEecccc---
Confidence 4566666677788888877 5554444321 111445799999998776442 467778876544
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-E
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 314 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l 314 (732)
+..--.-..+.....|+-++ -++|+. +. .+.+-++... +++.+..+.... ..-.-+.++|||+ +
T Consensus 140 ~~~~~~~~~e~ne~~w~~~n-d~Fflt-~G------lG~v~ILsyp---sLkpv~si~AH~----snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 140 IVNEEQFKFEVNEISWNNSN-DLFFLT-NG------LGCVEILSYP---SLKPVQSIKAHP----SNCICIEFDPDGRYF 204 (313)
T ss_pred eeehhcccceeeeeeecCCC-CEEEEe-cC------CceEEEEecc---ccccccccccCC----cceEEEEECCCCceE
Confidence 22212223345567788554 477776 22 2234444433 223344444443 3334567999998 4
Q ss_pred EEEEeccCCeeeEEEEeccCC-eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-
Q 004735 315 FFVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS- 392 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~- 392 (732)
+.-+.+ ..+-++|++.- -.|.++..++.+ +.+.|.- +|+.|. +..++-.-.|.. .++|.
T Consensus 205 A~GsAD----AlvSLWD~~ELiC~R~isRldwpV---------RTlSFS~---dg~~lA-SaSEDh~IDIA~--vetGd~ 265 (313)
T KOG1407|consen 205 ATGSAD----ALVSLWDVDELICERCISRLDWPV---------RTLSFSH---DGRMLA-SASEDHFIDIAE--VETGDR 265 (313)
T ss_pred eecccc----ceeeccChhHhhhheeeccccCce---------EEEEecc---Ccceee-ccCccceEEeEe--cccCCe
Confidence 432222 22334555431 134444443333 3444442 555554 444444444543 44443
Q ss_pred eEEeccCCCceEEeeEeCCEEEEEEeC
Q 004735 393 LSLLDIPFTDIDNITLGNDCLFVEGAS 419 (732)
Q Consensus 393 ~~~lt~~~~~v~~~~~~~~~~~~~~~~ 419 (732)
+.++........-...+...++.++.+
T Consensus 266 ~~eI~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 266 VWEIPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred EEEeeccCCceeEEecCCCceeeEEec
Confidence 444443211111113445555555443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.002 Score=65.11 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=92.2
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
..+++...+..|-.+|..+ ...++-.+. +.+......+++|..|.....+ ..|-++|+.+.+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs--~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRD---------dtl~viDlRt~e--- 374 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRS--ADKTRSVPL----GGRVTSLDLSMDGLELLSSSRD---------DTLKVIDLRTKE--- 374 (459)
T ss_pred eeeeecccccceEEEeccC--CceeeEeec----CcceeeEeeccCCeEEeeecCC---------Cceeeeeccccc---
Confidence 3455555667788889776 444443333 3466778899999997665332 477889999887
Q ss_pred cEEcccCCCc-----eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 236 PKVLVSGSDF-----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 236 ~~~lt~~~~~-----~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
+++...-.++ .....|||||+++|--+. +..||++++. +|++..+......+ ..+....|+|
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~--------dgsv~iW~v~-tgKlE~~l~~s~s~----~aI~s~~W~~ 441 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA--------DGSVYIWSVF-TGKLEKVLSLSTSN----AAITSLSWNP 441 (459)
T ss_pred EEEEeeccccccccccceeEECCCCceeeeccC--------CCcEEEEEcc-CceEEEEeccCCCC----cceEEEEEcC
Confidence 6665433222 345689999998876552 3459999999 88885555444443 4577889999
Q ss_pred CCc-EEEEEeccCCeeeEE
Q 004735 311 KGE-LFFVTDRKNGFWNLH 328 (732)
Q Consensus 311 Dg~-l~~~~~~~~g~~~l~ 328 (732)
-|+ ++ .+++ +....||
T Consensus 442 sG~~Ll-sadk-~~~v~lW 458 (459)
T KOG0288|consen 442 SGSGLL-SADK-QKAVTLW 458 (459)
T ss_pred CCchhh-cccC-CcceEec
Confidence 998 54 3444 4444444
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0028 Score=60.46 Aligned_cols=207 Identities=18% Similarity=0.156 Sum_probs=108.2
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCC-----CEEEEEcCCCCCCCChhhHH-hhcc--CC----Cccc----HHHH
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRG-----WAFVDVNYGGSTGYGREFRE-RLLG--RW----GIVD----VNDC 558 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G-----~~v~~~d~rG~~g~g~~~~~-~~~~--~~----~~~~----~~D~ 558 (732)
.| .||+||..+. ...+..++..+...+ --++.+|--|+-.....+.. +.+. +. +... ..=+
T Consensus 46 iP-TIfIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wl 122 (288)
T COG4814 46 IP-TIFIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWL 122 (288)
T ss_pred cc-eEEEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHH
Confidence 45 4689997433 345566676676655 34667776664211111000 0000 00 0011 2235
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-------CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCC
Q 004735 559 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-------FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 631 (732)
Q Consensus 559 ~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-------~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 631 (732)
..++.+|.+++.+ .++-++||||||.....++. .| .+...|.+.+.++...+.. ......-.....-..
T Consensus 123 k~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P-~lnK~V~l~gpfN~~~l~~-de~v~~v~~~~~~~~ 198 (288)
T COG4814 123 KKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLP-PLNKLVSLAGPFNVGNLVP-DETVTDVLKDGPGLI 198 (288)
T ss_pred HHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCc-chhheEEecccccccccCC-CcchheeeccCcccc
Confidence 6778899888765 48999999999998887775 24 3566666666555111110 000000000000000
Q ss_pred hhhhhhcCccccCCCC--CCCEEEEEeCCC------CccChHHHHHHHHHHHhCCCCEEEEEeCC--CCccCCCcccHHH
Q 004735 632 EKDYYEKSPINFVDKF--SCPIILFQGLED------KVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKAENIKF 701 (732)
Q Consensus 632 ~~~~~~~sp~~~~~~i--~~P~Lii~G~~D------~~v~~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~~~~~~ 701 (732)
...|.++-. .....+ ..-+|+|.|+-| ..||...+...+..+...++.+.-.+++| +.|.-. +++ ..
T Consensus 199 ~t~y~~y~~-~n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~l-hen-~~ 275 (288)
T COG4814 199 KTPYYDYIA-KNYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKL-HEN-PT 275 (288)
T ss_pred CcHHHHHHH-hcceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhcc-CCC-hh
Confidence 011111100 011112 256899999765 46888899999999988877665555665 567532 233 34
Q ss_pred HHHHHHHHHH
Q 004735 702 TLEQQMVFFA 711 (732)
Q Consensus 702 ~~~~~~~fl~ 711 (732)
+.+.+..||-
T Consensus 276 v~~yv~~FLw 285 (288)
T COG4814 276 VAKYVKNFLW 285 (288)
T ss_pred HHHHHHHHhh
Confidence 5555666653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.049 Score=53.97 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=90.8
Q ss_pred eEEEEEEcCCCCccccEEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee-EEecCCCCC
Q 004735 221 TEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR-VCVAGFDPT 298 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~-~~~~~~~~~ 298 (732)
..|+.+|..+|+ ..--.. .......| ..++..|++.. ....|+.+|.. +|+..+. ....... .
T Consensus 46 ~~l~~~d~~tG~---~~W~~~~~~~~~~~~--~~~~~~v~v~~--------~~~~l~~~d~~-tG~~~W~~~~~~~~~-~ 110 (238)
T PF13360_consen 46 GNLYALDAKTGK---VLWRFDLPGPISGAP--VVDGGRVYVGT--------SDGSLYALDAK-TGKVLWSIYLTSSPP-A 110 (238)
T ss_dssp SEEEEEETTTSE---EEEEEECSSCGGSGE--EEETTEEEEEE--------TTSEEEEEETT-TSCEEEEEEE-SSCT-C
T ss_pred CEEEEEECCCCC---EEEEeecccccccee--eeccccccccc--------ceeeeEecccC-Ccceeeeeccccccc-c
Confidence 699999998887 322221 22222223 33566676665 12369999988 8987655 2222211 0
Q ss_pred ccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccc-ccCCCceeecc--cceeeeeecCCCCEEEEEE
Q 004735 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRPLWVFGI--NSYEIIQSHGEKNLIACSY 375 (732)
Q Consensus 299 ~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~-~~~~~~w~~~~--~~~~~~~~~~~~~~l~~~s 375 (732)
..........++..++.... ...|+.+|+++|+..--.+... ....+...... ....+ .++.+++..
T Consensus 111 --~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~ 180 (238)
T PF13360_consen 111 --GVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-----SDGRVYVSS 180 (238)
T ss_dssp --STB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-----CTTEEEEEC
T ss_pred --ccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-----ECCEEEEEc
Confidence 11122233334553333332 2468999999998642221111 10010000000 01111 334555544
Q ss_pred EECCEEEEEEEECCCCceEEeccCCCceEE-eeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 376 RQNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 376 ~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~-~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.++. ++.+|..+++..- ......... ....++.++ +.+. ...|+.+|+++|+.
T Consensus 181 -~~g~--~~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~l~-~~~~---~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 181 -GDGR--VVAVDLATGEKLW-SKPISGIYSLPSVDGGTLY-VTSS---DGRLYALDLKTGKV 234 (238)
T ss_dssp -CTSS--EEEEETTTTEEEE-EECSS-ECECEECCCTEEE-EEET---TTEEEEEETTTTEE
T ss_pred -CCCe--EEEEECCCCCEEE-EecCCCccCCceeeCCEEE-EEeC---CCEEEEEECCCCCE
Confidence 3443 6667999887443 222333333 244455554 4443 36899999999973
|
... |
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0019 Score=63.67 Aligned_cols=141 Identities=16% Similarity=0.070 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCC--EEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~--~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
....++||+||.-.. ........+|.....|+ .++.+..+..+. -..|..... -......++...+..|.+..
T Consensus 16 ~~~~vlvfVHGyn~~-f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~-~~~Y~~d~~--~a~~s~~~l~~~L~~L~~~~- 90 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNS-FEDALRRAAQLAHDLGFPGVVILFSWPSDGS-LLGYFYDRE--SARFSGPALARFLRDLARAP- 90 (233)
T ss_pred CCCeEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEEcCCCCC-hhhhhhhhh--hHHHHHHHHHHHHHHHHhcc-
Confidence 456899999997222 22233345555555555 688888875433 112211110 00112445556666665552
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh----C-C-----CcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCc
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA----F-R-----DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSP 640 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~----~-p-----~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 640 (732)
...+|.|++||||+.+.+.++. . . .+|..+++.+|-.+...+.....
T Consensus 91 -~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~~~~---------------------- 147 (233)
T PF05990_consen 91 -GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRSQLP---------------------- 147 (233)
T ss_pred -CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHHHHH----------------------
Confidence 3579999999999999988864 1 1 26778888888777544321100
Q ss_pred cccCCCCCCCEEEEEeCCCCccC
Q 004735 641 INFVDKFSCPIILFQGLEDKVVP 663 (732)
Q Consensus 641 ~~~~~~i~~P~Lii~G~~D~~v~ 663 (732)
.+.+...++.+.+..+|....
T Consensus 148 --~~~~~~~~itvy~s~~D~AL~ 168 (233)
T PF05990_consen 148 --DLGSSARRITVYYSRNDRALK 168 (233)
T ss_pred --HHhhcCCCEEEEEcCCchHHH
Confidence 122334789999999997543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.13 Score=55.11 Aligned_cols=205 Identities=14% Similarity=0.072 Sum_probs=120.6
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
.....+++|++++....+ ...+.++|.++.+. ...+.-+. .-....++|||+.++...... ...
T Consensus 77 ~~i~v~~~~~~vyv~~~~--------~~~v~vid~~~~~~--~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~-----~~~ 140 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGD--------SNTVSVIDTATNTV--LGSIPVGL-GPVGLAVDPDGKYVYVANAGN-----GNN 140 (381)
T ss_pred cceeeCCCCCeEEEecCC--------CCeEEEEcCcccce--eeEeeecc-CCceEEECCCCCEEEEEeccc-----CCc
Confidence 455789999985554432 26889999766541 11222222 334568999999997655321 246
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccc---cccCCC
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD---AEFSRP 350 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~---~~~~~~ 350 (732)
.+.++|-. ++++... ...+. .....+.+|||+.+|+.+. +...|..+|.++....+ .... .....|
T Consensus 141 ~vsvid~~-t~~~~~~-~~vG~------~P~~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P 209 (381)
T COG3391 141 TVSVIDAA-TNKVTAT-IPVGN------TPTGVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGP 209 (381)
T ss_pred eEEEEeCC-CCeEEEE-EecCC------CcceEEECCCCCeEEEEec--CCCeEEEEeCCCcceec-cccccccccCCCC
Confidence 68899877 6655333 33332 2367899999995555553 45568888877765554 2110 001111
Q ss_pred ceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc--CCCceEEe-eEeCCEEEEEEeCCCCCcEEE
Q 004735 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVA 427 (732)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly 427 (732)
....+.+ ++..+|.....+....+..++..++....... +......+ ..+++..+|...+. ...++
T Consensus 210 ------~~i~v~~---~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~ 278 (381)
T COG3391 210 ------AGIAVDP---DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVS 278 (381)
T ss_pred ------ceEEECC---CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--CCeEE
Confidence 1223332 77777777665555688889998887766532 22112222 45556666666544 56788
Q ss_pred EEEcCCCcc
Q 004735 428 KVTLDDHKL 436 (732)
Q Consensus 428 ~~dl~~~~~ 436 (732)
.+|..+..+
T Consensus 279 vid~~~~~v 287 (381)
T COG3391 279 VIDGATDRV 287 (381)
T ss_pred EEeCCCCce
Confidence 888777654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.042 Score=61.49 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=88.9
Q ss_pred eCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc
Q 004735 161 NYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (732)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 239 (732)
...++.+-++.... ++.. .|+.. .....+.+++-+|+++++-.++ ..|-+++...+.. .+.+
T Consensus 72 ~s~~~tv~~y~fps--~~~~~iL~Rf----tlp~r~~~v~g~g~~iaagsdD---------~~vK~~~~~D~s~--~~~l 134 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPS--GEEDTILARF----TLPIRDLAVSGSGKMIAAGSDD---------TAVKLLNLDDSSQ--EKVL 134 (933)
T ss_pred eeccceEEEeeCCC--CCccceeeee----eccceEEEEecCCcEEEeecCc---------eeEEEEeccccch--heee
Confidence 33455677777766 4443 44433 3445778899999998887663 4677788776541 3334
Q ss_pred ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCc----cccCcCceeCCCCc-E
Q 004735 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI----VESPTEPKWSSKGE-L 314 (732)
Q Consensus 240 t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~----~~~~~~~~wspDg~-l 314 (732)
-...+.+.+..++|.|..||..+ -++.|++++++ +|.+. ..+++-.+.- -.....++|+|+|. +
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss--------~dG~v~iw~~~-~~~~~--~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l 203 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSS--------CDGKVQIWDLQ-DGILS--KTLTGVDKDNEFILSRICTRLAWHPKGGTL 203 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEe--------cCceEEEEEcc-cchhh--hhcccCCccccccccceeeeeeecCCCCeE
Confidence 34445667889999999998776 34459999998 77642 2122211100 02346789999966 6
Q ss_pred EEEEeccCCeeeEEEEeccCCeE
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
++...+ ..+-.++..+.+.
T Consensus 204 a~~~~d----~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 204 AVPPVD----NTVKVYSRKGWEL 222 (933)
T ss_pred EeeccC----CeEEEEccCCcee
Confidence 665544 2344555555543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.093 Score=62.29 Aligned_cols=235 Identities=7% Similarity=-0.033 Sum_probs=119.3
Q ss_pred ceeEEECC-EEEEEeCCCCeEEEEeCCCCC--CC----c-eecCCCCCCCCeEeeceeecCC-CCEEEEEEeccCCCCCC
Q 004735 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKD--SS----P-LPITPDYGEPLVSYADGIFDPR-FNRYVTVREDRRQDALN 218 (732)
Q Consensus 148 ~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~--~~----~-~~lt~~~~~~~~~~~~~~~spd-G~~l~~~~~~~~~~~~~ 218 (732)
.+..++.+ .++++...++.|.++++.... +. + ..+.. ........|+|. +++|+ +....
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~~la-s~~~D------ 554 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-----RSKLSGICWNSYIKSQVA-SSNFE------ 554 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-----cCceeeEEeccCCCCEEE-EEeCC------
Confidence 33444432 455566677888888875300 10 0 01111 122355678875 55544 43322
Q ss_pred ceeEEEEEEcCCCCccccEEcccCCCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 219 ~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
..|.++|+.+++. ...+......+....|+| ||..|+-.+ ....|.++|+. ++.. ...+...
T Consensus 555 --g~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs--------~Dg~v~iWd~~-~~~~--~~~~~~~-- 617 (793)
T PLN00181 555 --GVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGS--------DDGSVKLWSIN-QGVS--IGTIKTK-- 617 (793)
T ss_pred --CeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEc--------CCCEEEEEECC-CCcE--EEEEecC--
Confidence 5788889987651 233433445567788997 777665444 23458888987 5644 2333322
Q ss_pred CccccCcCceeC-CCCcEEEEEeccCCeeeEEEEeccCCeE--EEecccccccCCCceeecccceeeeeecCCCCEEEEE
Q 004735 298 TIVESPTEPKWS-SKGELFFVTDRKNGFWNLHKWIESNNEV--LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 298 ~~~~~~~~~~ws-pDg~l~~~~~~~~g~~~l~~~d~~~g~~--~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 374 (732)
..+....|+ ++|.++++... .+ .|+.+|+.+++. ..+...... ...+.|. ++..| ++
T Consensus 618 ---~~v~~v~~~~~~g~~latgs~-dg--~I~iwD~~~~~~~~~~~~~h~~~---------V~~v~f~----~~~~l-vs 677 (793)
T PLN00181 618 ---ANICCVQFPSESGRSLAFGSA-DH--KVYYYDLRNPKLPLCTMIGHSKT---------VSYVRFV----DSSTL-VS 677 (793)
T ss_pred ---CCeEEEEEeCCCCCEEEEEeC-CC--eEEEEECCCCCccceEecCCCCC---------EEEEEEe----CCCEE-EE
Confidence 234566774 56774444443 34 466777765432 222211111 1123443 55544 45
Q ss_pred EEECCEEEEEEEECC-----CCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 375 YRQNGRSYLGILDDF-----GHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 375 s~~~g~~~ly~~~~~-----~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
...++.-.||-+... ...++.++.....+..+ ...++.+++.++. + ..+++++....
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-D--~~v~iw~~~~~ 740 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-T--NEVFVYHKAFP 740 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-C--CEEEEEECCCC
Confidence 556777777754321 12344454444444444 2333444444442 2 35666665544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.012 Score=59.00 Aligned_cols=156 Identities=10% Similarity=-0.028 Sum_probs=94.6
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCC---CCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITP---DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~---~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
.+.-...+++++.-. .+||++|+.+ .+.|.. .+.+ ....-..+.++.+.+++|-.... ..+|+
T Consensus 91 L~VrmNr~RLvV~Le--e~IyIydI~~----MklLhTI~t~~~n-~~gl~AlS~n~~n~ylAyp~s~t-------~GdV~ 156 (391)
T KOG2110|consen 91 LAVRMNRKRLVVCLE--ESIYIYDIKD----MKLLHTIETTPPN-PKGLCALSPNNANCYLAYPGSTT-------SGDVV 156 (391)
T ss_pred EEEEEccceEEEEEc--ccEEEEeccc----ceeehhhhccCCC-ccceEeeccCCCCceEEecCCCC-------CceEE
Confidence 333444567766643 3499999986 233321 1111 22233444566777888864433 37899
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
++|+.+-+. +..+....+..+..+|||||..||-.+ + .++-|.|+.+. +|.. +..+...-.- ..+.
T Consensus 157 l~d~~nl~~--v~~I~aH~~~lAalafs~~G~llATAS-e------KGTVIRVf~v~-~G~k--l~eFRRG~~~--~~Iy 222 (391)
T KOG2110|consen 157 LFDTINLQP--VNTINAHKGPLAALAFSPDGTLLATAS-E------KGTVIRVFSVP-EGQK--LYEFRRGTYP--VSIY 222 (391)
T ss_pred EEEccccee--eeEEEecCCceeEEEECCCCCEEEEec-c------CceEEEEEEcC-CccE--eeeeeCCcee--eEEE
Confidence 999876441 334444455677789999999998765 2 25668899988 6643 3333332100 4567
Q ss_pred CceeCCCCc-EEEEEeccCCeeeEEEEecc
Q 004735 305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 305 ~~~wspDg~-l~~~~~~~~g~~~l~~~d~~ 333 (732)
..+|+||++ |..+++ .+.-+|+.++..
T Consensus 223 SL~Fs~ds~~L~~sS~--TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSN--TETVHIFKLEKV 250 (391)
T ss_pred EEEECCCCCeEEEecC--CCeEEEEEeccc
Confidence 889999999 554444 477778877643
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.014 Score=58.36 Aligned_cols=183 Identities=11% Similarity=0.065 Sum_probs=103.3
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCc-------ccc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNI-------QEP 236 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~--~~~-------~~~ 236 (732)
.+-.++-.. ..+..|+... .-.....+|-|-+...+.+.-. .-|.++..+. ... +..
T Consensus 121 vVriy~kss--t~pt~Lks~s---QrnvtclawRPlsaselavgCr---------~gIciW~~s~tln~~r~~~~~s~~~ 186 (445)
T KOG2139|consen 121 VVRIYDKSS--TCPTKLKSVS---QRNVTCLAWRPLSASELAVGCR---------AGICIWSDSRTLNANRNIRMMSTHH 186 (445)
T ss_pred EEEEeccCC--CCCceecchh---hcceeEEEeccCCcceeeeeec---------ceeEEEEcCcccccccccccccccc
Confidence 344455444 5666777652 2334566788876554444332 2333333221 110 001
Q ss_pred EEccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 237 KVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 237 ~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
.++.. +...+...+|.+||..|+-.+. +...|.+.|++ .|.-..+. .... +++....|||||..
T Consensus 187 ~qvl~~pgh~pVtsmqwn~dgt~l~tAS~-------gsssi~iWdpd-tg~~~pL~--~~gl----gg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 187 LQVLQDPGHNPVTSMQWNEDGTILVTASF-------GSSSIMIWDPD-TGQKIPLI--PKGL----GGFSLLKWSPDGDV 252 (445)
T ss_pred hhheeCCCCceeeEEEEcCCCCEEeeccc-------CcceEEEEcCC-CCCccccc--ccCC----CceeeEEEcCCCCE
Confidence 12222 2334567899999998876653 34558999998 66543232 2232 56778999999995
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
+|.+.- .+..+||.-+-.--+.+.++ +...+....|++ .|..|+|+.. |...||.+...+..
T Consensus 253 lfaAt~-davfrlw~e~q~wt~erw~l-gsgrvqtacWsp------------cGsfLLf~~s--gsp~lysl~f~~~~ 314 (445)
T KOG2139|consen 253 LFAATC-DAVFRLWQENQSWTKERWIL-GSGRVQTACWSP------------CGSFLLFACS--GSPRLYSLTFDGED 314 (445)
T ss_pred EEEecc-cceeeeehhcccceecceec-cCCceeeeeecC------------CCCEEEEEEc--CCceEEEEeecCCC
Confidence 555544 45566762221111223333 222556678887 8888888764 66788988766543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.018 Score=61.64 Aligned_cols=220 Identities=8% Similarity=-0.010 Sum_probs=128.5
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-C
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-G 242 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~ 242 (732)
...+|+++..+ +...+|.... ...+....|+++|+.|+.-.. ...+.++|....+. ++.+.. .
T Consensus 196 g~~vylW~~~s--~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~---------~g~v~iwD~~~~k~--~~~~~~~h 259 (484)
T KOG0305|consen 196 GQSVYLWSASS--GSVTELCSFG---EELVTSVKWSPDGSHLAVGTS---------DGTVQIWDVKEQKK--TRTLRGSH 259 (484)
T ss_pred cceEEEEecCC--CceEEeEecC---CCceEEEEECCCCCEEEEeec---------CCeEEEEehhhccc--cccccCCc
Confidence 44699999887 7777777652 345677889999999766554 25788889876441 334443 3
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~ 322 (732)
...+...+|+ +..+ .+... ...|...|+. ..+.. ...+.+.. ..+-...|++|++.+... .
T Consensus 260 ~~rvg~laW~--~~~l--ssGsr------~~~I~~~dvR-~~~~~-~~~~~~H~----qeVCgLkws~d~~~lASG---g 320 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVL--SSGSR------DGKILNHDVR-ISQHV-VSTLQGHR----QEVCGLKWSPDGNQLASG---G 320 (484)
T ss_pred CceeEEEecc--CceE--EEecC------CCcEEEEEEe-cchhh-hhhhhccc----ceeeeeEECCCCCeeccC---C
Confidence 4556667777 2222 22122 3347777776 33211 11233443 567789999999733222 1
Q ss_pred CeeeEEEEeccC-CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 323 GFWNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 323 g~~~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
....++++|... .....++.....+....|.|- ...|+.+........|...+..+|.....-....
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~------------q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs 388 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW------------QSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS 388 (484)
T ss_pred CccceEeccCCCccccEEEeccceeeeEeeeCCC------------ccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence 223466666633 334456666667777788762 2235555544445667777777776543333344
Q ss_pred ceEEe--eEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 402 DIDNI--TLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 402 ~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
.|..+ +...+.++...+.....-.||.+.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 56666 344556666555555544566664
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0019 Score=70.40 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc----------------HHHHHHHHCCCEEEEEcCCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN----------------LSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~----------------~~~~~l~~~G~~v~~~d~rG 534 (732)
.+..+..|++...+ .....|+||+++|||+........ .....|.+. ..++.+|.+-
T Consensus 59 ~~~~lFyw~~~s~~------~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~ 131 (462)
T PTZ00472 59 TDKHYFYWAFGPRN------GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPA 131 (462)
T ss_pred CCceEEEEEEEcCC------CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCC
Confidence 36678888887654 145579999999998765322110 001123333 4677888542
Q ss_pred CCCCChhhHHhhccCC-CcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh----CC-------CcceEE
Q 004735 535 STGYGREFRERLLGRW-GIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA----FR-------DTFKAG 601 (732)
Q Consensus 535 ~~g~g~~~~~~~~~~~-~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~----~p-------~~~~a~ 601 (732)
..|++.. ....... .....+|+.++++.+.++ +.....++.|+|+||||..+..++. +. -.++++
T Consensus 132 G~G~S~~--~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi 209 (462)
T PTZ00472 132 GVGFSYA--DKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGL 209 (462)
T ss_pred CcCcccC--CCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEE
Confidence 2343322 1111000 012367777777755544 3445689999999999998866664 11 147899
Q ss_pred EeecCcCCHH
Q 004735 602 ASLYGVADLS 611 (732)
Q Consensus 602 v~~~~~~d~~ 611 (732)
++..|..|..
T Consensus 210 ~IGNg~~dp~ 219 (462)
T PTZ00472 210 AVGNGLTDPY 219 (462)
T ss_pred EEeccccChh
Confidence 9998887653
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.11 Score=51.25 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=80.6
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCC--CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC-CCCc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNI 233 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~-~~~~ 233 (732)
++.+..+++-|.++|.-+ |+.|.--... .++-.......|||||.+|++-- ++-|-++|+. .|..
T Consensus 125 l~a~ssr~~PIh~wdaft--G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy----------krcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFT--GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY----------KRCIRVFDTSRPGRD 192 (406)
T ss_pred eeeeccccCceeeeeccc--cccccchhhhhhHHhhhhheeEEecCCCCeEeecc----------cceEEEeeccCCCCC
Confidence 444444556677888766 5443211110 00001124577999999976542 2567777773 3431
Q ss_pred cc-cEEcccC----CCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 234 QE-PKVLVSG----SDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 234 ~~-~~~lt~~----~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
-+ ...++.+ .+.....++|| |.+.+|+-+.. .++-++.-. ++.+ +.++-+.. +++..++
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~--------q~~giy~~~-~~~p--l~llggh~----gGvThL~ 257 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG--------QRVGIYNDD-GRRP--LQLLGGHG----GGVTHLQ 257 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeeccc--------ceeeeEecC-CCCc--eeeecccC----CCeeeEE
Confidence 00 1122222 23456678899 66677766522 223333333 3433 55566665 8899999
Q ss_pred eCCCCcEEEEEeccCCeeeEEEEeccC
Q 004735 308 WSSKGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 308 wspDg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
|-+||.-+|+..+.. ..|..+|+..
T Consensus 258 ~~edGn~lfsGaRk~--dkIl~WDiR~ 282 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKD--DKILCWDIRY 282 (406)
T ss_pred eccCcCeecccccCC--CeEEEEeehh
Confidence 999999455554423 3455566543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.066 Score=56.76 Aligned_cols=160 Identities=10% Similarity=0.059 Sum_probs=94.9
Q ss_pred ceeecCCCCEEEEEEecc---CCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 195 DGIFDPRFNRYVTVREDR---RQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~---~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
...|.+-|+-|+...... .+..+...+.||.++.++.. .+.-....+-+....|||+|+-.+.+- .-||.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s---~~V~L~k~GPVhdv~W~~s~~EF~Vvy---GfMPA- 294 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES---VSVPLLKEGPVHDVTWSPSGREFAVVY---GFMPA- 294 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce---EEEecCCCCCceEEEECCCCCEEEEEE---ecccc-
Confidence 356999999887765432 23445557999999998544 332233345566789999999887664 23443
Q ss_pred ccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccc-ccCCC
Q 004735 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRP 350 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~-~~~~~ 350 (732)
.+-++|+. |.+ +-.+... .-..+.|+|-|+++..+.-++=...+-.+|..+ .+.|...+. +.+--
T Consensus 295 --kvtifnlr--~~~--v~df~eg------pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~ 360 (566)
T KOG2315|consen 295 --KVTIFNLR--GKP--VFDFPEG------PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVF 360 (566)
T ss_pred --eEEEEcCC--CCE--eEeCCCC------CccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccCCceEE
Confidence 36777876 443 3333332 235788999999665654422233455667665 334442221 22234
Q ss_pred ceeecccceeeeeecCCCCEEEEEEE-----ECCEEEEEEEE
Q 004735 351 LWVFGINSYEIIQSHGEKNLIACSYR-----QNGRSYLGILD 387 (732)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~l~~~s~-----~~g~~~ly~~~ 387 (732)
.|+| ||.+|+.... .++...||.++
T Consensus 361 eW~P------------dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 361 EWSP------------DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEcC------------CCcEEEEEeccccEEecCCeEEEEec
Confidence 5665 7777765543 24455677664
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.4 Score=54.90 Aligned_cols=200 Identities=15% Similarity=0.107 Sum_probs=109.0
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
.++|++|.. +....+... ...+..+.++++++.++.+.......+. ....+.....++. +..++.+..
T Consensus 149 ~~l~~~d~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~ 216 (620)
T COG1506 149 SDLYVVDIE---SKLIKLGLG----NLDVVSFATDGDGRLVASIRLDDDADPW--VTNLYVLIEGNGE---LESLTPGEG 216 (620)
T ss_pred cceEEEccC---cccccccCC----CCceeeeeeCCCCceeEEeeeccccCCc--eEeeEEEecCCCc---eEEEcCCCc
Confidence 478888876 333334433 3555677778888876666554431221 2344444445666 777887777
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCC
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g 323 (732)
....+.+.+||+.+++.....+..-+....+++.+.+ .++... .....+.. .......+.-++. ++|......+
T Consensus 217 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g 291 (620)
T COG1506 217 SISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGE-LGEVDG--DLSSGDDT--RGAWAVEGGLDGDGLLFIATDGGG 291 (620)
T ss_pred eeeeeeeCCCCCeeEEeccCCccCccccceEEEEecc-ccccce--eeccCCcc--cCcHHhccccCCCcEEEEEecCCC
Confidence 7788999999999999886665311234556676633 444322 11111000 1111222223444 7776665467
Q ss_pred eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC-EEEEEEEECCCCceEEec
Q 004735 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 324 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g-~~~ly~~~~~~~~~~~lt 397 (732)
...++.++..++....+......+ ..++. +++.+++...... ..++|+++. ++..+++
T Consensus 292 ~~~l~~~~~~~~~~~~~~~~~~~v--~~f~~------------~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~ 350 (620)
T COG1506 292 SSPLFRVDDLGGGVEGLSGDDGGV--PGFDV------------DGRKLALAYSSPTEPPEIYLYDR--GEEAKLT 350 (620)
T ss_pred ceEEEEEeccCCceeeecCCCceE--EEEee------------CCCEEEEEecCCCCccceEEEcC--CCceEEe
Confidence 777777765555443333221111 11111 5666766665444 678998876 3344444
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0068 Score=68.77 Aligned_cols=137 Identities=10% Similarity=0.022 Sum_probs=80.5
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC----------CCcc------ccEEcccCCCceeccccCCCCC
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----------QNIQ------EPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~----------~~~~------~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
..-++|||||++++.-.++. -|.++..+. |... ....|-....-+....||||++
T Consensus 72 v~CVR~S~dG~~lAsGSDD~---------~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDR---------LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred eeEEEECCCCCeEeeccCcc---------eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 35567999999976655532 333333331 1100 0112222333456789999999
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
.|+-.+.+ ..+.+++.. +.+ .++.+.+.. .-+-.+.|.|=|+ +.-++++ ..-.+|+.+ +-+
T Consensus 143 ~lvS~s~D--------nsViiwn~~-tF~--~~~vl~~H~----s~VKGvs~DP~Gky~ASqsdD--rtikvwrt~-dw~ 204 (942)
T KOG0973|consen 143 LLVSVSLD--------NSVIIWNAK-TFE--LLKVLRGHQ----SLVKGVSWDPIGKYFASQSDD--RTLKVWRTS-DWG 204 (942)
T ss_pred EEEEeccc--------ceEEEEccc-cce--eeeeeeccc----ccccceEECCccCeeeeecCC--ceEEEEEcc-cce
Confidence 99877733 347777766 453 366777775 6788999999998 5544443 344455532 235
Q ss_pred eEEEeccc------ccccCCCceeecc
Q 004735 336 EVLAIYSL------DAEFSRPLWVFGI 356 (732)
Q Consensus 336 ~~~~l~~~------~~~~~~~~w~~~~ 356 (732)
-.+.|+.. ..-+..+.|+|+.
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSWSPDG 231 (942)
T ss_pred eeEeeccchhhCCCcceeeecccCCCc
Confidence 55666522 2234567898843
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.088 Score=57.75 Aligned_cols=246 Identities=15% Similarity=0.107 Sum_probs=123.9
Q ss_pred ccccccccCCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCC
Q 004735 138 VRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL 217 (732)
Q Consensus 138 ~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 217 (732)
.|+.-..|-.++..+-+++.+......|.|-++|+.+. ...+.+... ....++.+.+|||+..+-.+.+..-. -
T Consensus 407 iRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AH----dgaIWsi~~~pD~~g~vT~saDktVk-f 480 (888)
T KOG0306|consen 407 IRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAH----DGAIWSISLSPDNKGFVTGSADKTVK-F 480 (888)
T ss_pred eEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhcc----ccceeeeeecCCCCceEEecCCcEEE-E
Confidence 34443444444444556666667777888999999862 222333322 33457788999999865554433200 0
Q ss_pred CceeEEEEEEcCCCCccccEEc-------ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeE
Q 004735 218 NSTTEIVAIALNGQNIQEPKVL-------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 290 (732)
Q Consensus 218 ~~~~~l~~~d~~~~~~~~~~~l-------t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~ 290 (732)
| ..-++.+ ..|.. .+.| ..-.+.+...++||||+.||..--+. ...+|-+| +=+. ..
T Consensus 481 W--df~l~~~-~~gt~--~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn------TVkVyflD---tlKF--fl 544 (888)
T KOG0306|consen 481 W--DFKLVVS-VPGTQ--KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN------TVKVYFLD---TLKF--FL 544 (888)
T ss_pred E--eEEEEec-cCccc--ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC------eEEEEEec---ceee--ee
Confidence 0 1111222 22220 1111 11123345578999999988654222 33455444 2222 22
Q ss_pred EecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE-ecccccccCCCceeecccceeeeeecCCCC
Q 004735 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKN 369 (732)
Q Consensus 291 ~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 369 (732)
.+-|.. -.+-.+..|||++++.+... . .++-++-++=|.... +...+- ....+.|+ +..
T Consensus 545 sLYGHk----LPV~smDIS~DSklivTgSA-D--KnVKiWGLdFGDCHKS~fAHdD---------Svm~V~F~----P~~ 604 (888)
T KOG0306|consen 545 SLYGHK----LPVLSMDISPDSKLIVTGSA-D--KNVKIWGLDFGDCHKSFFAHDD---------SVMSVQFL----PKT 604 (888)
T ss_pred eecccc----cceeEEeccCCcCeEEeccC-C--CceEEeccccchhhhhhhcccC---------ceeEEEEc----ccc
Confidence 233443 45667789999996555433 2 234444444454332 222110 12345666 566
Q ss_pred EEEEEEEECCEEEEEEEECCCC-ceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEE
Q 004735 370 LIACSYRQNGRSYLGILDDFGH-SLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 370 ~l~~~s~~~g~~~ly~~~~~~~-~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
+++|++.+++...-| |-+.= ..+.|......+..+ ..+++.+++.++. +..-++|.
T Consensus 605 ~~FFt~gKD~kvKqW--Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh-D~sIRlwE 662 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQW--DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH-DKSIRLWE 662 (888)
T ss_pred eeEEEecCcceEEee--chhhhhhheeeccchheeeeeEEcCCCCeEEeccC-CceeEeee
Confidence 889999888765544 32211 233444444445555 4555556555543 33334444
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.062 Score=53.88 Aligned_cols=241 Identities=10% Similarity=-0.014 Sum_probs=133.7
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
.++++...++.|+++|..+ ++.. -|... .....+.+|+..|+.++-...+- .+..+|.++-. +
T Consensus 121 ~~v~~as~d~tikv~D~~t--g~~e~~LrGH----t~sv~di~~~a~Gk~l~tcSsDl---------~~~LWd~~~~~-~ 184 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTET--GELERSLRGH----TDSVFDISFDASGKYLATCSSDL---------SAKLWDFDTFF-R 184 (406)
T ss_pred eEEEEecCCceEEEEEccc--hhhhhhhhcc----ccceeEEEEecCccEEEecCCcc---------chhheeHHHHH-H
Confidence 5677777788999999988 5543 23322 33468889999998755443322 24555665421 0
Q ss_pred ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 235 ~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
-.+.+......+..+.+=|-|.+|+-.+.+ ..|..++++ +|-. +..+.+.. ..+..++...||.|
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD--------~tik~We~~-tg~c--v~t~~~h~----ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRD--------NTIKAWECD-TGYC--VKTFPGHS----EWVRMVRVNQDGTI 249 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccc--------cceeEEecc-ccee--EEeccCch----HhEEEEEecCCeeE
Confidence 023333334456678888999888655422 236777887 6754 56666664 34456677788875
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeeccc--ceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGIN--SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
+..... ...-++|. ..+++.+.+. ..+..+.-..|.+... +..+....+++..+..+..+|+.-.+|-+. ++
T Consensus 250 ~As~s~-dqtl~vW~--~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--tg 324 (406)
T KOG0295|consen 250 IASCSN-DQTLRVWV--VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--TG 324 (406)
T ss_pred EEecCC-CceEEEEE--eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc--CC
Confidence 544433 33445554 4455332222 1111111122332111 001110001445677777888888887554 55
Q ss_pred c-eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 392 S-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 392 ~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
. +-.|...+..|.++ ..+++++++..+... .|-++|+..+.
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~~~ 367 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDK---TLRVWDLKNLQ 367 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCC---cEEEEEeccce
Confidence 4 33455556678777 567777777776432 35555665554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.13 Score=50.75 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=102.1
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
.....|+||.+.|+.+.... ..|.-++.+|.- .+.++-.. .-....++.-+|+..+ + ++ .
T Consensus 88 vS~LTynp~~rtLFav~n~p--------~~iVElt~~Gdl---irtiPL~g~~DpE~Ieyig~n~fvi-~--dE-----R 148 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKP--------AAIVELTKEGDL---IRTIPLTGFSDPETIEYIGGNQFVI-V--DE-----R 148 (316)
T ss_pred ccceeeCCCcceEEEecCCC--------ceEEEEecCCce---EEEecccccCChhHeEEecCCEEEE-E--eh-----h
Confidence 57889999999976665432 588888887654 55554211 1112345666666332 2 22 2
Q ss_pred ccEEEEEEecCCCceee-----eEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeE-EEecccc
Q 004735 272 KAELWVGYISENGDVYK-----RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLD 344 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~ 344 (732)
..+|+++.++.+++... +.+-.....+ .+....+|+|+.+ +++...+ .-..||.++-..... ..+....
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N--~GfEGlA~d~~~~~l~~aKEr--~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKN--KGFEGLAWDPVDHRLFVAKER--NPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCCC--cCceeeecCCCCceEEEEEcc--CCcEEEEEecCCcccccccccCc
Confidence 34577777764433221 1111111112 5678999999988 6665554 556788776322111 1111111
Q ss_pred cccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEE--eccCCCc-------eEEeeEeCCEEEE
Q 004735 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL--LDIPFTD-------IDNITLGNDCLFV 415 (732)
Q Consensus 345 ~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~--lt~~~~~-------v~~~~~~~~~~~~ 415 (732)
.....-+..+.+.+.|-+ ..+.+++.+.++ ..|..++.++.-... |+.+... ...+.-++...+|
T Consensus 225 -~~~~~~f~~DvSgl~~~~---~~~~LLVLS~ES--r~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY 298 (316)
T COG3204 225 -TADRDLFVLDVSGLEFNA---ITNSLLVLSDES--RRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY 298 (316)
T ss_pred -ccccceEeeccccceecC---CCCcEEEEecCC--ceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE
Confidence 111223334445555532 355666666543 346666766653333 3333221 2333444555556
Q ss_pred EEeCCC
Q 004735 416 EGASGV 421 (732)
Q Consensus 416 ~~~~~~ 421 (732)
+.+.++
T Consensus 299 IvSEPn 304 (316)
T COG3204 299 IVSEPN 304 (316)
T ss_pred EEecCC
Confidence 665443
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.046 Score=55.92 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=92.8
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEe-eceeecCCCCEEEEEEeccCCC---------CCC
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSY-ADGIFDPRFNRYVTVREDRRQD---------ALN 218 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~-~~~~~spdG~~l~~~~~~~~~~---------~~~ 218 (732)
+|...++.+++.+. .-.|+.++.++ +..+.+++..++....+ ++...+|+|. |+|+.....-. ...
T Consensus 121 ~f~~~ggdL~VaDA-YlGL~~V~p~g--~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~ 196 (376)
T KOG1520|consen 121 RFDKKGGDLYVADA-YLGLLKVGPEG--GLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGD 196 (376)
T ss_pred EeccCCCeEEEEec-ceeeEEECCCC--CcceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeeecCC
Confidence 34444545555543 33599999987 78888887654444544 6678899664 45553322100 112
Q ss_pred ceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecC-CCC
Q 004735 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDP 297 (732)
Q Consensus 219 ~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~-~~~ 297 (732)
...+|+.+|..+.. .+.|.++-.|.++.+.|||+..+.|..... .+|..+=++ +.+.....++.. -.
T Consensus 197 ~~GRl~~YD~~tK~---~~VLld~L~F~NGlaLS~d~sfvl~~Et~~-------~ri~rywi~-g~k~gt~EvFa~~LP- 264 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKV---TKVLLDGLYFPNGLALSPDGSFVLVAETTT-------ARIKRYWIK-GPKAGTSEVFAEGLP- 264 (376)
T ss_pred CccceEEecCcccc---hhhhhhcccccccccCCCCCCEEEEEeecc-------ceeeeeEec-CCccCchhhHhhcCC-
Confidence 35788999998887 788888888999999999999999887332 234444444 222222344444 33
Q ss_pred CccccCcCceeCCCCc
Q 004735 298 TIVESPTEPKWSSKGE 313 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~ 313 (732)
+++..++-+++|.
T Consensus 265 ---G~PDNIR~~~~G~ 277 (376)
T KOG1520|consen 265 ---GYPDNIRRDSTGH 277 (376)
T ss_pred ---CCCcceeECCCCC
Confidence 6667888888887
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.18 Score=49.78 Aligned_cols=205 Identities=16% Similarity=0.156 Sum_probs=95.2
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
.+..+|.||.+.|++|.+.. ..|+.+++++.- .+.+. .+.+-.-+.++.-+|+ ++..+ .+
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~--------~~i~els~~G~v---lr~i~l~g~~D~EgI~y~g~~~-~vl~~-Er------ 84 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEP--------GEIYELSLDGKV---LRRIPLDGFGDYEGITYLGNGR-YVLSE-ER------ 84 (248)
T ss_dssp EEEEEEETTTTEEEEEETTT--------TEEEEEETT--E---EEEEE-SS-SSEEEEEE-STTE-EEEEE-TT------
T ss_pred ccccEEcCCCCeEEEEECCC--------CEEEEEcCCCCE---EEEEeCCCCCCceeEEEECCCE-EEEEE-cC------
Confidence 57889999999988887653 589999987543 55553 3333344567776664 43343 22
Q ss_pred ccEEEEEEecCCCc-e--e---eeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEec--cCCeEEEecc
Q 004735 272 KAELWVGYISENGD-V--Y---KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE--SNNEVLAIYS 342 (732)
Q Consensus 272 ~~~l~v~d~~~~g~-~--~---~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~--~~g~~~~l~~ 342 (732)
..+|++++++..++ . . ...+......+ .++..++|++.++ +++...+ .-..||.++. ..........
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N--~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGN--KGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---S--S--EEEEEETTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCC--cceEEEEEcCCCCEEEEEeCC--CChhhEEEccccCccceeeccc
Confidence 34588888852222 1 1 11211111111 4578999999877 6655443 4566888775 2222221111
Q ss_pred cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE--EeccCC-------CceEEeeEeCCEE
Q 004735 343 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS--LLDIPF-------TDIDNITLGNDCL 413 (732)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~--~lt~~~-------~~v~~~~~~~~~~ 413 (732)
.... .........+.+.+-+ ..+.+++.|..+ ..|..+|.++.-+. .|..+. .....+..+.+.-
T Consensus 161 ~~~~-~~~~~~~d~S~l~~~p---~t~~lliLS~es--~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 161 QDLD-DDKLFVRDLSGLSYDP---RTGHLLILSDES--RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp HHHH--HT--SS---EEEEET---TTTEEEEEETTT--TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred cccc-cccceeccccceEEcC---CCCeEEEEECCC--CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 0000 0011111223444443 566777777543 45667776655333 333321 1234453333345
Q ss_pred EEEEeCCCCCcEEEEE
Q 004735 414 FVEGASGVEPSSVAKV 429 (732)
Q Consensus 414 ~~~~~~~~~~~~ly~~ 429 (732)
+|+.+. |...|++
T Consensus 235 LYIvsE---pNlfy~f 247 (248)
T PF06977_consen 235 LYIVSE---PNLFYRF 247 (248)
T ss_dssp EEEEET---TTEEEEE
T ss_pred EEEEcC---CceEEEe
Confidence 555554 3456654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0039 Score=68.23 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCCCccC-Cccc-HHHHHHHHCCCEEEEEcCCCCCCCChhh--HHhhccCCCc----ccHHHHHHHHHHHH
Q 004735 495 PPLLVKSHGGPTSEAR-GILN-LSIQYWTSRGWAFVDVNYGGSTGYGREF--RERLLGRWGI----VDVNDCCSCATFLV 566 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~-~~~~-~~~~~l~~~G~~v~~~d~rG~~g~g~~~--~~~~~~~~~~----~~~~D~~~~i~~l~ 566 (732)
.|++|++-|- +.... .... ...+...+.|-.++++..|- ||.+. .+....+..- ..++|++..++++.
T Consensus 29 gpifl~~ggE-~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGGE-GPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE--S-S-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 6888888553 22111 1111 23333344599999999984 33332 2222222221 23788888899988
Q ss_pred hcC-CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC
Q 004735 567 GSG-KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD 609 (732)
Q Consensus 567 ~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d 609 (732)
.+. ..+..+++++|.|+||.++.++-. +|+.|.++++-+++..
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 654 345569999999999999999987 9999999999888653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.023 Score=62.73 Aligned_cols=146 Identities=9% Similarity=0.068 Sum_probs=84.8
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
..+.++- +++.+...+|.|-.+|... +... .+.-+ .....+..+.....++...+ ...|.++
T Consensus 498 gla~D~~n~~~vsa~~~Gilkfw~f~~--k~l~~~l~l~-----~~~~~iv~hr~s~l~a~~~d---------df~I~vv 561 (910)
T KOG1539|consen 498 GLAVDGTNRLLVSAGADGILKFWDFKK--KVLKKSLRLG-----SSITGIVYHRVSDLLAIALD---------DFSIRVV 561 (910)
T ss_pred EEEecCCCceEEEccCcceEEEEecCC--cceeeeeccC-----CCcceeeeeehhhhhhhhcC---------ceeEEEE
Confidence 3444433 6777777788888888875 3211 11111 01112222332222222222 2689999
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|..+.++ +|.+-..........||||||||+-.+. .+.|.++|+. +|.. +..+--. .-...+
T Consensus 562 D~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasm--------D~tIr~wDlp-t~~l--ID~~~vd-----~~~~sl 623 (910)
T KOG1539|consen 562 DVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASM--------DSTIRTWDLP-TGTL--IDGLLVD-----SPCTSL 623 (910)
T ss_pred Echhhhh--hHHhhccccceeeeEeCCCCcEEEEeec--------CCcEEEEecc-Ccce--eeeEecC-----Ccceee
Confidence 9988762 3344444556778999999999987773 3459999998 7876 4433222 224578
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~ 330 (732)
.+||+|.++.++.. ++..||.+
T Consensus 624 s~SPngD~LAT~Hv--d~~gIylW 645 (910)
T KOG1539|consen 624 SFSPNGDFLATVHV--DQNGIYLW 645 (910)
T ss_pred EECCCCCEEEEEEe--cCceEEEE
Confidence 89999994444443 33446655
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.044 Score=60.30 Aligned_cols=181 Identities=18% Similarity=0.165 Sum_probs=101.7
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
+.+.+...|..+-++.+++ .....+-.+ +....++.+|+|-|- +|.+..+.. ...||..|- ..
T Consensus 464 rfLlScSED~svRLWsl~t--~s~~V~y~G---H~~PVwdV~F~P~Gy--YFatas~D~-----tArLWs~d~--~~--- 526 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDT--WSCLVIYKG---HLAPVWDVQFAPRGY--YFATASHDQ-----TARLWSTDH--NK--- 526 (707)
T ss_pred cceeeccCCcceeeeeccc--ceeEEEecC---CCcceeeEEecCCce--EEEecCCCc-----eeeeeeccc--CC---
Confidence 4555555555444444443 222222122 234568888999984 444433321 367887665 23
Q ss_pred cEEcccCCCc-eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 236 PKVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 236 ~~~lt~~~~~-~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
+.++..+.-. +.-..|.|++.++|--+. ...+.++|+. +|.. ++++.+.. ..+..+++||+|+.
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSs--------D~tVRlWDv~-~G~~--VRiF~GH~----~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSS--------DRTVRLWDVS-TGNS--VRIFTGHK----GPVTALAFSPCGRY 591 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCC--------CceEEEEEcC-CCcE--EEEecCCC----CceEEEEEcCCCce
Confidence 4455444322 223678999997764432 2347777888 7765 78898886 78899999999984
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEE-ecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
+.+.+. .| .|..+|+.+|+.-. +....... .++.|.. +|+ ++.+...+..-.||
T Consensus 592 LaSg~e-d~--~I~iWDl~~~~~v~~l~~Ht~ti---------~SlsFS~---dg~-vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 592 LASGDE-DG--LIKIWDLANGSLVKQLKGHTGTI---------YSLSFSR---DGN-VLASGGADNSVRLW 646 (707)
T ss_pred Eeeccc-CC--cEEEEEcCCCcchhhhhcccCce---------eEEEEec---CCC-EEEecCCCCeEEEE
Confidence 334433 34 46667777765432 22222222 2334442 555 44454445556666
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.073 Score=50.92 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHC-C--CEEEEEcCCCCCCCChhhHHhhccC-CCcccHHH-HHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-G--WAFVDVNYGGSTGYGREFRERLLGR-WGIVDVND-CCSCATFLV 566 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G--~~v~~~d~rG~~g~g~~~~~~~~~~-~~~~~~~D-~~~~i~~l~ 566 (732)
....++++++.|.|+.. ..+...+..|... + ..+..+-.-|..+-..+..+..... -.....+| +..-++++.
T Consensus 26 ~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik 103 (301)
T KOG3975|consen 26 GEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIK 103 (301)
T ss_pred CCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHH
Confidence 45679999999987654 2223334444332 2 4466665544333222212111111 01111233 334455655
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
+. .....||.|+|||-|+|+.+.++.
T Consensus 104 ~~-~Pk~~ki~iiGHSiGaYm~Lqil~ 129 (301)
T KOG3975|consen 104 EY-VPKDRKIYIIGHSIGAYMVLQILP 129 (301)
T ss_pred Hh-CCCCCEEEEEecchhHHHHHHHhh
Confidence 54 334579999999999999999986
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.038 Score=52.51 Aligned_cols=146 Identities=10% Similarity=0.035 Sum_probs=88.8
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
..+.-+.+...++.+-++|..++ ...+.|... ......-+|+||+.| .+.. -..|-.+|..+-.
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTg-t~v~sL~~~-----s~VtSlEvs~dG~il-Tia~---------gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTG-TEVQSLEFN-----SPVTSLEVSQDGRIL-TIAY---------GSSVKFWDAKSFG 216 (334)
T ss_pred ccCceEEeeccCCceEEEEeccC-cEEEEEecC-----CCCcceeeccCCCEE-EEec---------CceeEEecccccc
Confidence 34444445456677888898873 334444432 233566799999964 3322 1466677777633
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe-cCCCCCccccCcCceeCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~-~~~~~~~~~~~~~~~wspD 311 (732)
+..--.-+..+....++|+-. + |+...+ ...+|.+|.. +|+- +-.. .+.. +.+..+.||||
T Consensus 217 ---~lKs~k~P~nV~SASL~P~k~-~-fVaGge------d~~~~kfDy~-TgeE--i~~~nkgh~----gpVhcVrFSPd 278 (334)
T KOG0278|consen 217 ---LLKSYKMPCNVESASLHPKKE-F-FVAGGE------DFKVYKFDYN-TGEE--IGSYNKGHF----GPVHCVRFSPD 278 (334)
T ss_pred ---ceeeccCccccccccccCCCc-e-EEecCc------ceEEEEEecc-CCce--eeecccCCC----CceEEEEECCC
Confidence 211122234456678899863 4 454233 3458999998 7754 3333 4443 56778899999
Q ss_pred CcEEEEEeccCCeeeEEEEecc
Q 004735 312 GELFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~ 333 (732)
|.+|.+... .|..+||...+.
T Consensus 279 GE~yAsGSE-DGTirlWQt~~~ 299 (334)
T KOG0278|consen 279 GELYASGSE-DGTIRLWQTTPG 299 (334)
T ss_pred CceeeccCC-CceEEEEEecCC
Confidence 987766555 788889887654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.059 Score=54.60 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=98.7
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCC---CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.|.+-+|.++.+-..|..|.++.+..+ +..+.|+... .++.-+.+-..|+|--.-++++...+ +.+.+
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~-~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D--------n~v~i 158 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPEN-GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD--------NTVSI 158 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCc-ccccCcccceEEEeecceeEEEEeecccchhhHhhccCC--------ceEEE
Confidence 355557777777666776777766542 4444444210 01245667788999766666554422 68889
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
+++.+|+ ...-...++.+.+..|+-||.+|+-+. ....|.++|.. .|++.... ..... .....
T Consensus 159 Wnv~tge---ali~l~hpd~i~S~sfn~dGs~l~Ttc--------kDKkvRv~dpr-~~~~v~e~-~~heG----~k~~R 221 (472)
T KOG0303|consen 159 WNVGTGE---ALITLDHPDMVYSMSFNRDGSLLCTTC--------KDKKVRVIDPR-RGTVVSEG-VAHEG----AKPAR 221 (472)
T ss_pred EeccCCc---eeeecCCCCeEEEEEeccCCceeeeec--------ccceeEEEcCC-CCcEeeec-ccccC----CCcce
Confidence 9999987 322234677788899999999988766 23458999987 77763222 11121 34567
Q ss_pred ceeCCCCcEEEEEec-cCCeeeEEEEeccC
Q 004735 306 PKWSSKGELFFVTDR-KNGFWNLHKWIESN 334 (732)
Q Consensus 306 ~~wspDg~l~~~~~~-~~g~~~l~~~d~~~ 334 (732)
..|-.+|. ++++.- .....++.++|+.+
T Consensus 222 aifl~~g~-i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 222 AIFLASGK-IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred eEEeccCc-eeeeccccccccceeccCccc
Confidence 88999987 444332 13345566667654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.16 Score=52.21 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=104.4
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
.+++...+-.|+++..... ..+..+-+. .........+|.|.+++....+ .....-|..+|.. .
T Consensus 275 ~v~~aSad~~i~vws~~~~-s~~~~~~~h----~~~V~~ls~h~tgeYllsAs~d---------~~w~Fsd~~~g~~--l 338 (506)
T KOG0289|consen 275 TVITASADEIIRVWSVPLS-SEPTSSRPH----EEPVTGLSLHPTGEYLLSASND---------GTWAFSDISSGSQ--L 338 (506)
T ss_pred heeecCCcceEEeeccccc-cCccccccc----cccceeeeeccCCcEEEEecCC---------ceEEEEEccCCcE--E
Confidence 3444445556777766541 333333332 2234556688999987665442 2333345555540 2
Q ss_pred EEcccC-C-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-
Q 004735 237 KVLVSG-S-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 313 (732)
Q Consensus 237 ~~lt~~-~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~- 313 (732)
.+.... . --+....|.|||- .|.... .++.|-++|+. ++. +...+++.. +-+..+.|+.+|-
T Consensus 339 t~vs~~~s~v~~ts~~fHpDgL--ifgtgt------~d~~vkiwdlk-s~~--~~a~Fpght----~~vk~i~FsENGY~ 403 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDGL--IFGTGT------PDGVVKIWDLK-SQT--NVAKFPGHT----GPVKAISFSENGYW 403 (506)
T ss_pred EEEeeccccceeEEeeEcCCce--EEeccC------CCceEEEEEcC-Ccc--ccccCCCCC----CceeEEEeccCceE
Confidence 222221 1 1245678999995 344322 24568899998 554 356677765 6778899999996
Q ss_pred EEEEEeccCCeeeEEEEeccCCe-EEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNE-VLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~-~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
|+..+++ + .+..+|+..-+ .+.+. ++..+ ..++.|-. .|..+... ...-+||.+.-.++
T Consensus 404 Lat~add--~--~V~lwDLRKl~n~kt~~l~~~~~---------v~s~~fD~---SGt~L~~~---g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 404 LATAADD--G--SVKLWDLRKLKNFKTIQLDEKKE---------VNSLSFDQ---SGTYLGIA---GSDLQVYICKKKTK 464 (506)
T ss_pred EEEEecC--C--eEEEEEehhhcccceeecccccc---------ceeEEEcC---CCCeEEee---cceeEEEEEecccc
Confidence 4444443 3 36777775432 22222 11111 22333321 44444443 33467888888888
Q ss_pred ceEEecc
Q 004735 392 SLSLLDI 398 (732)
Q Consensus 392 ~~~~lt~ 398 (732)
+++.+..
T Consensus 465 ~W~~~~~ 471 (506)
T KOG0289|consen 465 SWTEIKE 471 (506)
T ss_pred cceeeeh
Confidence 8877654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.39 Score=49.49 Aligned_cols=224 Identities=12% Similarity=0.119 Sum_probs=114.9
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
+..+.++|... +..-.+-.+ ......+..++|+-..++-... ...|+++....... +..+....
T Consensus 240 d~~av~~d~~s--~q~l~~~~G---h~kki~~v~~~~~~~~v~~aSa---------d~~i~vws~~~~s~--~~~~~~h~ 303 (506)
T KOG0289|consen 240 DKTAVLFDKPS--NQILATLKG---HTKKITSVKFHKDLDTVITASA---------DEIIRVWSVPLSSE--PTSSRPHE 303 (506)
T ss_pred CCceEEEecch--hhhhhhccC---cceEEEEEEeccchhheeecCC---------cceEEeeccccccC--cccccccc
Confidence 33566666654 222222222 2456677788998876433222 13555554433220 33333334
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 323 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g 323 (732)
+.+......|.|.+|...+ ++ ......|+. +|.. +........+ ..+...++.||| ++|.+...++
T Consensus 304 ~~V~~ls~h~tgeYllsAs-~d-------~~w~Fsd~~-~g~~--lt~vs~~~s~--v~~ts~~fHpDg-Lifgtgt~d~ 369 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSAS-ND-------GTWAFSDIS-SGSQ--LTVVSDETSD--VEYTSAAFHPDG-LIFGTGTPDG 369 (506)
T ss_pred ccceeeeeccCCcEEEEec-CC-------ceEEEEEcc-CCcE--EEEEeecccc--ceeEEeeEcCCc-eEEeccCCCc
Confidence 4556667789999987766 22 223344666 6643 3433332111 456788999999 5555544345
Q ss_pred eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC-CceEEeccC-CC
Q 004735 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HSLSLLDIP-FT 401 (732)
Q Consensus 324 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~-~~~~~lt~~-~~ 401 (732)
. |-.+|+..+. .+..... ..+| ...+.|. ++++.+.+...++...|| |+.. ...+.++.+ ..
T Consensus 370 ~--vkiwdlks~~--~~a~Fpg-ht~~-----vk~i~Fs----ENGY~Lat~add~~V~lw--DLRKl~n~kt~~l~~~~ 433 (506)
T KOG0289|consen 370 V--VKIWDLKSQT--NVAKFPG-HTGP-----VKAISFS----ENGYWLATAADDGSVKLW--DLRKLKNFKTIQLDEKK 433 (506)
T ss_pred e--EEEEEcCCcc--ccccCCC-CCCc-----eeEEEec----cCceEEEEEecCCeEEEE--Eehhhcccceeeccccc
Confidence 4 4445665543 2221111 1122 2345565 677777777777765566 4432 233334433 22
Q ss_pred ceEEee-EeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 402 DIDNIT-LGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 402 ~v~~~~-~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+..+. +..+.++.+++ ....+|.++-.+++.
T Consensus 434 ~v~s~~fD~SGt~L~~~g---~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 434 EVNSLSFDQSGTYLGIAG---SDLQVYICKKKTKSW 466 (506)
T ss_pred cceeEEEcCCCCeEEeec---ceeEEEEEecccccc
Confidence 466663 33445554442 234677776555554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.41 Score=51.27 Aligned_cols=234 Identities=9% Similarity=-0.006 Sum_probs=111.2
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
...++.+++.. .++.|+.+|..+ |+.. +..... .....+. .++..+++... ...||.+|.+
T Consensus 62 ~v~~~~v~v~~-~~g~v~a~d~~t--G~~~W~~~~~~----~~~~~p~--v~~~~v~v~~~---------~g~l~ald~~ 123 (377)
T TIGR03300 62 AVAGGKVYAAD-ADGTVVALDAET--GKRLWRVDLDE----RLSGGVG--ADGGLVFVGTE---------KGEVIALDAE 123 (377)
T ss_pred EEECCEEEEEC-CCCeEEEEEccC--CcEeeeecCCC----CcccceE--EcCCEEEEEcC---------CCEEEEEECC
Confidence 34455555543 557899999876 5432 212110 0112333 35666554332 2589999998
Q ss_pred CCCccccEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 230 GQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 230 ~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
+|+ +.- ...+......|.. ++.++++.. ....|+.+|.+ +|+..+........ ........|..
T Consensus 124 tG~---~~W~~~~~~~~~~~p~v--~~~~v~v~~--------~~g~l~a~d~~-tG~~~W~~~~~~~~-~~~~~~~sp~~ 188 (377)
T TIGR03300 124 DGK---ELWRAKLSSEVLSPPLV--ANGLVVVRT--------NDGRLTALDAA-TGERLWTYSRVTPA-LTLRGSASPVI 188 (377)
T ss_pred CCc---EeeeeccCceeecCCEE--ECCEEEEEC--------CCCeEEEEEcC-CCceeeEEccCCCc-eeecCCCCCEE
Confidence 887 321 1112223334444 344554432 23459999998 78764433222211 00001123333
Q ss_pred CCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccC--CCcee-ecccceeeeeecCCCCEEEEEEEECCEEEEEE
Q 004735 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS--RPLWV-FGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (732)
Q Consensus 309 spDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~--~~~w~-~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~ 385 (732)
. ++.+++.. . . ..++.+|+.+|+..--........ ..... .-...... .++.+|+.+. +| .|+.
T Consensus 189 ~-~~~v~~~~-~-~--g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-----~~~~vy~~~~-~g--~l~a 255 (377)
T TIGR03300 189 A-DGGVLVGF-A-G--GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-----DGGQVYAVSY-QG--RVAA 255 (377)
T ss_pred E-CCEEEEEC-C-C--CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-----ECCEEEEEEc-CC--EEEE
Confidence 2 34344332 2 2 358889998886432111000000 00000 00000011 4456666543 33 5888
Q ss_pred EECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 386 LDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 386 ~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
++.++|+..--... .....+...++.+++.. ....|+.+|..+|+
T Consensus 256 ~d~~tG~~~W~~~~-~~~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 256 LDLRSGRVLWKRDA-SSYQGPAVDDNRLYVTD----ADGVVVALDRRSGS 300 (377)
T ss_pred EECCCCcEEEeecc-CCccCceEeCCEEEEEC----CCCeEEEEECCCCc
Confidence 89988875432221 11222234456655443 23579999998886
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.94 Score=48.50 Aligned_cols=269 Identities=13% Similarity=0.080 Sum_probs=127.2
Q ss_pred ceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEEeC
Q 004735 93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSI 172 (732)
Q Consensus 93 ~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d~ 172 (732)
.|... ++.+|.... .+ .++..+..+| +..+-...+.. + ......+++.+++. ..++.||.+|.
T Consensus 60 ~p~v~-~~~v~v~~~----~g--~v~a~d~~tG-~~~W~~~~~~~----~----~~~p~v~~~~v~v~-~~~g~l~ald~ 122 (377)
T TIGR03300 60 QPAVA-GGKVYAADA----DG--TVVALDAETG-KRLWRVDLDER----L----SGGVGADGGLVFVG-TEKGEVIALDA 122 (377)
T ss_pred ceEEE-CCEEEEECC----CC--eEEEEEccCC-cEeeeecCCCC----c----ccceEEcCCEEEEE-cCCCEEEEEEC
Confidence 34444 677776543 12 3667766555 44333221100 0 11233445555544 45678999999
Q ss_pred CCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE-ccc-CCC----c
Q 004735 173 DSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVS-GSD----F 245 (732)
Q Consensus 173 ~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-lt~-~~~----~ 245 (732)
++ |+.. +.... ......+.. ++..+++... ...|+.+|.++|+ ..- ... ... .
T Consensus 123 ~t--G~~~W~~~~~----~~~~~~p~v--~~~~v~v~~~---------~g~l~a~d~~tG~---~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 123 ED--GKELWRAKLS----SEVLSPPLV--ANGLVVVRTN---------DGRLTALDAATGE---RLWTYSRVTPALTLRG 182 (377)
T ss_pred CC--CcEeeeeccC----ceeecCCEE--ECCEEEEECC---------CCeEEEEEcCCCc---eeeEEccCCCceeecC
Confidence 77 5432 22211 112223333 3444444322 2589999998887 321 111 111 1
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCC----c-cccCcCceeCCCCcEEEEEec
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT----I-VESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~----~-~~~~~~~~wspDg~l~~~~~~ 320 (732)
...|... |+ .+++.. ....++.+|+. +|+..+...+...... . ......|... ++.+|+.+ .
T Consensus 183 ~~sp~~~-~~-~v~~~~--------~~g~v~ald~~-tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~-~ 249 (377)
T TIGR03300 183 SASPVIA-DG-GVLVGF--------AGGKLVALDLQ-TGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVS-Y 249 (377)
T ss_pred CCCCEEE-CC-EEEEEC--------CCCEEEEEEcc-CCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEE-c
Confidence 1233332 33 443332 23458999988 7876443322111000 0 0001233332 33355443 3
Q ss_pred cCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEE-ecc-
Q 004735 321 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL-LDI- 398 (732)
Q Consensus 321 ~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~-lt~- 398 (732)
.| .|+.+|+++|+..--.+. .....| .. .++.+|+.+ ....|+.+|.++|+..- ...
T Consensus 250 -~g--~l~a~d~~tG~~~W~~~~-~~~~~p---------~~-----~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~ 308 (377)
T TIGR03300 250 -QG--RVAALDLRSGRVLWKRDA-SSYQGP---------AV-----DDNRLYVTD---ADGVVVALDRRSGSELWKNDEL 308 (377)
T ss_pred -CC--EEEEEECCCCcEEEeecc-CCccCc---------eE-----eCCEEEEEC---CCCeEEEEECCCCcEEEccccc
Confidence 23 588999988865432211 011111 11 566777664 23468888988886432 111
Q ss_pred CCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 399 PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 399 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
...........++.++ +.+. ...||.+|..+|+.
T Consensus 309 ~~~~~ssp~i~g~~l~-~~~~---~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 309 KYRQLTAPAVVGGYLV-VGDF---EGYLHWLSREDGSF 342 (377)
T ss_pred cCCccccCEEECCEEE-EEeC---CCEEEEEECCCCCE
Confidence 1111222223445444 4332 24699999888874
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.28 Score=51.47 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecCCCCCc
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTI 299 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~~~~~~ 299 (732)
...+++|.++.. ..++-...+...-.++||||..||.-+ .+..||++-++.+|. ........+
T Consensus 428 G~w~V~d~e~~~---lv~~~~d~~~ls~v~ysp~G~~lAvgs--------~d~~iyiy~Vs~~g~~y~r~~k~~g----- 491 (626)
T KOG2106|consen 428 GRWFVLDTETQD---LVTIHTDNEQLSVVRYSPDGAFLAVGS--------HDNHIYIYRVSANGRKYSRVGKCSG----- 491 (626)
T ss_pred ceEEEEecccce---eEEEEecCCceEEEEEcCCCCEEEEec--------CCCeEEEEEECCCCcEEEEeeeecC-----
Confidence 678889988755 444444466677789999999999776 233477777775553 322222222
Q ss_pred cccCcCceeCCCCcEEEEEeccCCeeeEEE
Q 004735 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHK 329 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~~~~g~~~l~~ 329 (732)
..+....||+|++. +.++. .++.-||.
T Consensus 492 -s~ithLDwS~Ds~~-~~~~S-~d~eiLyW 518 (626)
T KOG2106|consen 492 -SPITHLDWSSDSQF-LVSNS-GDYEILYW 518 (626)
T ss_pred -ceeEEeeecCCCce-EEecc-CceEEEEE
Confidence 34567889999973 34444 34444444
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.16 Score=50.00 Aligned_cols=143 Identities=12% Similarity=0.027 Sum_probs=75.4
Q ss_pred CCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc
Q 004735 162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
-.+|++..+|+.+- +-.+.|+.. -......+||+||++|+-.+.+ ..+-.+|+-.|.. ..++-.
T Consensus 42 c~nG~vvI~D~~T~-~iar~lsaH----~~pi~sl~WS~dgr~LltsS~D---------~si~lwDl~~gs~--l~rirf 105 (405)
T KOG1273|consen 42 CANGRVVIYDFDTF-RIARMLSAH----VRPITSLCWSRDGRKLLTSSRD---------WSIKLWDLLKGSP--LKRIRF 105 (405)
T ss_pred ccCCcEEEEEcccc-chhhhhhcc----ccceeEEEecCCCCEeeeecCC---------ceeEEEeccCCCc--eeEEEc
Confidence 35778999999872 233444443 2345778899999997765542 4677788887761 333321
Q ss_pred CCCceeccccCCCCCeEEEEe-ccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC-CccccCcCceeCCCCcEEEEEe
Q 004735 242 GSDFYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFVTD 319 (732)
Q Consensus 242 ~~~~~~~p~~SPDG~~la~~~-~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDg~l~~~~~ 319 (732)
...+....|-|-.+..+.+. ++.. -++.+++ +++. ++++..+. +-........+.+-|+.+++..
T Consensus 106 -~spv~~~q~hp~k~n~~va~~~~~s--------p~vi~~s-~~~h---~~Lp~d~d~dln~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 106 -DSPVWGAQWHPRKRNKCVATIMEES--------PVVIDFS-DPKH---SVLPKDDDGDLNSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred -cCccceeeeccccCCeEEEEEecCC--------cEEEEec-CCce---eeccCCCccccccccccccccCCCCEEEEec
Confidence 22233445666433333332 2221 4666776 4433 33333221 1001222234777788555554
Q ss_pred ccCCeeeEEEEeccCCe
Q 004735 320 RKNGFWNLHKWIESNNE 336 (732)
Q Consensus 320 ~~~g~~~l~~~d~~~g~ 336 (732)
. .|+ |..++.++-+
T Consensus 173 s-KGk--llv~~a~t~e 186 (405)
T KOG1273|consen 173 S-KGK--LLVYDAETLE 186 (405)
T ss_pred C-cce--EEEEecchhe
Confidence 4 455 4445555543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.24 Score=51.50 Aligned_cols=246 Identities=13% Similarity=0.025 Sum_probs=131.3
Q ss_pred CCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 146 g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+..+++|..+ .++.....+|.+-+++.++ .....|... .-......|+-+|.+|+...-+ ..+.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G--~l~~tl~~H----kgPI~slKWnk~G~yilS~~vD---------~tti 301 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDG--NLISTLGQH----KGPIFSLKWNKKGTYILSGGVD---------GTTI 301 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCc--hhhhhhhcc----CCceEEEEEcCCCCEEEeccCC---------ccEE
Confidence 4566777633 4444555677777788775 555555544 3345667899999997655332 4667
Q ss_pred EEEcCCCCccccEEcccCCCce-eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccC
Q 004735 225 AIALNGQNIQEPKVLVSGSDFY-AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~-~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~ 303 (732)
++|..+|+ ..+...-.... -...|=-+.+ |+... ....|+|+-+.. .. ....+.+.. +.+
T Consensus 302 lwd~~~g~---~~q~f~~~s~~~lDVdW~~~~~---F~ts~------td~~i~V~kv~~-~~--P~~t~~GH~----g~V 362 (524)
T KOG0273|consen 302 LWDAHTGT---VKQQFEFHSAPALDVDWQSNDE---FATSS------TDGCIHVCKVGE-DR--PVKTFIGHH----GEV 362 (524)
T ss_pred EEeccCce---EEEeeeeccCCccceEEecCce---EeecC------CCceEEEEEecC-CC--cceeeeccc----Cce
Confidence 78988887 65554322111 1123432222 22212 233477777762 22 244555665 778
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEE
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~l 383 (732)
..+.|.|-|.|+.++.+ .+.-.||-..-. +....+-....++-...|+|... ...-+ ..+..+.++..++...+
T Consensus 363 ~alk~n~tg~LLaS~Sd-D~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~-v~~n~---~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 363 NALKWNPTGSLLASCSD-DGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGP-VTSNP---NMNLMLASASFDSTVKL 436 (524)
T ss_pred EEEEECCCCceEEEecC-CCeeEeeecCCC-cchhhhhhhccceeeEeecCCCC-ccCCC---cCCceEEEeecCCeEEE
Confidence 89999999996656555 566667654221 21222222222223345554211 11101 23344445555666666
Q ss_pred EEEECCCC-ceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 384 GILDDFGH-SLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 384 y~~~~~~~-~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
| |...+ .+..++.+...|.++ ..++++++..+ +.++ -+..++..++++
T Consensus 437 w--dv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG-s~dg--~V~iws~~~~~l 486 (524)
T KOG0273|consen 437 W--DVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG-SLDG--CVHIWSTKTGKL 486 (524)
T ss_pred E--EccCCceeEeeccCCCceEEEEecCCCcEEEec-CCCC--eeEeccccchhe
Confidence 6 44444 456677777778888 34555554433 3332 344444455553
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=61.84 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=55.5
Q ss_pred EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEE
Q 004735 238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (732)
Q Consensus 238 ~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~ 317 (732)
+..-+.+...+.+|||||++||.++ ...-|.++|.+ +-++ +-++... .+..--+.|||||+++.+
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VS--------qDGfLRvF~fd-t~eL--lg~mkSY----FGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVS--------QDGFLRIFDFD-TQEL--LGVMKSY----FGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEe--------cCceEEEeecc-HHHH--HHHHHhh----ccceEEEEEcCCccEEEe
Confidence 3344444667789999999999998 23448888887 4332 1111111 145567899999995555
Q ss_pred EeccCCeeeEEEEeccCCeEEEecccccccCCCceee
Q 004735 318 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 318 ~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 354 (732)
... .+--.+|.+. +.|.+..+. +...|+.
T Consensus 350 GGE-DDLVtVwSf~----erRVVARGq---GHkSWVs 378 (636)
T KOG2394|consen 350 GGE-DDLVTVWSFE----ERRVVARGQ---GHKSWVS 378 (636)
T ss_pred cCC-cceEEEEEec----cceEEEecc---cccccee
Confidence 444 4445555542 223333332 4556764
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0026 Score=68.33 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=62.2
Q ss_pred CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHH
Q 004735 510 RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589 (732)
Q Consensus 510 ~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~ 589 (732)
...|..+++.|.+.||.+ ..|.+|.+ .+|+.... ....++++.+.++.+.++. ...++.|+||||||.+++
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~g~g---YDwR~~~~---~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~ 177 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLFGFG---YDFRQSNR---LPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVK 177 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCcccCC---CCcccccc---HHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHH
Confidence 356777889999999866 67887543 33433210 0122567777777776653 246899999999999999
Q ss_pred HHHh-CCC----cceEEEeecCcC
Q 004735 590 AALA-FRD----TFKAGASLYGVA 608 (732)
Q Consensus 590 ~~~~-~p~----~~~a~v~~~~~~ 608 (732)
.++. +|+ .++..|++++..
T Consensus 178 ~fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 178 CFMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHHCCHhHHhHhccEEEECCCC
Confidence 8887 765 367777776654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.034 Score=56.44 Aligned_cols=262 Identities=12% Similarity=0.050 Sum_probs=134.1
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccc--ccccCCceeEEE--CCEEEEEeCCCC
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT--AQEYGGGAFRIF--GDTVIFSNYKDQ 165 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~--~~~~g~~~~~~~--~~~i~f~~~~~~ 165 (732)
+..++|.| |++|.--. ..|...||.-.. ++.+.. .|++-+.+..++ +..+ ++.+.++
T Consensus 99 V~~v~WtPeGRRLltgs----~SGEFtLWNg~~-------------fnFEtilQaHDs~Vr~m~ws~~g~wm-iSgD~gG 160 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGS----QSGEFTLWNGTS-------------FNFETILQAHDSPVRTMKWSHNGTWM-ISGDKGG 160 (464)
T ss_pred eeeEEEcCCCceeEeec----ccccEEEecCce-------------eeHHHHhhhhcccceeEEEccCCCEE-EEcCCCc
Confidence 45788998 77765432 246666665311 111111 122223333333 3333 3444455
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC-
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD- 244 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~- 244 (732)
-|-.+++.- ...+.+... ......+.+|||.... +.++.++ +.|-++|..-.+. .++| .+.+
T Consensus 161 ~iKyWqpnm--nnVk~~~ah---h~eaIRdlafSpnDsk-F~t~SdD--------g~ikiWdf~~~ke--e~vL-~GHgw 223 (464)
T KOG0284|consen 161 MIKYWQPNM--NNVKIIQAH---HAEAIRDLAFSPNDSK-FLTCSDD--------GTIKIWDFRMPKE--ERVL-RGHGW 223 (464)
T ss_pred eEEecccch--hhhHHhhHh---hhhhhheeccCCCCce-eEEecCC--------CeEEEEeccCCch--hhee-ccCCC
Confidence 555566543 223322222 1245678889995554 3333333 5677777665440 4455 4443
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCC
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g 323 (732)
-+....|.|--. |.+...++ +-+-++|.. +|.. +..+.+.. ..+-...|+++|. |+-.+.+
T Consensus 224 dVksvdWHP~kg-LiasgskD-------nlVKlWDpr-Sg~c--l~tlh~HK----ntVl~~~f~~n~N~Llt~skD--- 285 (464)
T KOG0284|consen 224 DVKSVDWHPTKG-LIASGSKD-------NLVKLWDPR-SGSC--LATLHGHK----NTVLAVKFNPNGNWLLTGSKD--- 285 (464)
T ss_pred CcceeccCCccc-eeEEccCC-------ceeEeecCC-Ccch--hhhhhhcc----ceEEEEEEcCCCCeeEEccCC---
Confidence 345678999755 44444232 246777887 6643 44444444 6678899999998 4433322
Q ss_pred eeeEEEEeccC-CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc-CCC
Q 004735 324 FWNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI-PFT 401 (732)
Q Consensus 324 ~~~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~-~~~ 401 (732)
..+-++|+.+ .+....-..+.++....|+|. ...|+.+...+|....|.+.+.. .+-.+.. .+.
T Consensus 286 -~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~------------~~~lftsgg~Dgsvvh~~v~~~~-p~~~i~~AHd~ 351 (464)
T KOG0284|consen 286 -QSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL------------NESLFTSGGSDGSVVHWVVGLEE-PLGEIPPAHDG 351 (464)
T ss_pred -ceEEEEehhHhHHHHHhhcchhhheeeccccc------------cccceeeccCCCceEEEeccccc-cccCCCccccc
Confidence 3566777764 223333234556667788873 33455555556655555554211 1111111 133
Q ss_pred ceEEe-eEeCCEEEEEEeC
Q 004735 402 DIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 402 ~v~~~-~~~~~~~~~~~~~ 419 (732)
.|-++ ..+=+.+++.+++
T Consensus 352 ~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSN 370 (464)
T ss_pred ceeeeeccccceeEeecCC
Confidence 44454 3455666666443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.058 Score=54.65 Aligned_cols=207 Identities=8% Similarity=-0.011 Sum_probs=112.1
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEE
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~ 169 (732)
.-.+.|.| .+.+--.-+ |+-...+|..... +..+.++..-.........-|...|.+....++++...+..+.+
T Consensus 84 vLDi~w~PfnD~vIASgS---eD~~v~vW~IPe~--~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASGS---EDTKVMVWQIPEN--GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred ccccccCccCCceeecCC---CCceEEEEECCCc--ccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 45788999 666654432 4466666665433 34444442110111111112344555566678888888889999
Q ss_pred EeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC-C-cee
Q 004735 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS-D-FYA 247 (732)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~-~-~~~ 247 (732)
+++.++ ...-.|. . .......+|+-||.+++.++.+ ..|-++|..+++ +..-.... + ...
T Consensus 159 Wnv~tg-eali~l~-h----pd~i~S~sfn~dGs~l~TtckD---------KkvRv~dpr~~~---~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 159 WNVGTG-EALITLD-H----PDMVYSMSFNRDGSLLCTTCKD---------KKVRVIDPRRGT---VVSEGVAHEGAKPA 220 (472)
T ss_pred EeccCC-ceeeecC-C----CCeEEEEEeccCCceeeeeccc---------ceeEEEcCCCCc---EeeecccccCCCcc
Confidence 999883 2233344 2 3556677899999997777664 367788888776 32221111 1 112
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeE
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l 327 (732)
...|-.||+ |+-+.+... ...++-+.|.+.-.+..-...+... .++-.|.|.+|.+++|+...+.+..+-
T Consensus 221 Raifl~~g~-i~tTGfsr~----seRq~aLwdp~nl~eP~~~~elDtS-----nGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 221 RAIFLASGK-IFTTGFSRM----SERQIALWDPNNLEEPIALQELDTS-----NGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred eeEEeccCc-eeeeccccc----cccceeccCcccccCcceeEEeccC-----CceEEeeecCCCCEEEEEecCCcceEE
Confidence 345667777 544433321 2344555554411111111222222 456678899998877776663444444
Q ss_pred EEE
Q 004735 328 HKW 330 (732)
Q Consensus 328 ~~~ 330 (732)
|.+
T Consensus 291 yEi 293 (472)
T KOG0303|consen 291 FEI 293 (472)
T ss_pred EEe
Confidence 444
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.14 Score=50.56 Aligned_cols=118 Identities=8% Similarity=-0.087 Sum_probs=70.3
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
....||+-|..|+.-+. +..|.++|..+-.+ .+.|+..-..+...+||+||++|.-.+. ..
T Consensus 27 ~~~~Fs~~G~~lAvGc~---------nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~--------D~ 87 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA---------NGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSR--------DW 87 (405)
T ss_pred ceEEeccCcceeeeecc---------CCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecC--------Cc
Confidence 45679999998776665 25788889988651 2334433345667899999999876552 23
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
.+-.+|+. .|..- ..+.-. .-+....|.|-.+ .++.+.- .... ++++...++.+.|.
T Consensus 88 si~lwDl~-~gs~l--~rirf~-----spv~~~q~hp~k~n~~va~~~-~~sp--~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 88 SIKLWDLL-KGSPL--KRIRFD-----SPVWGAQWHPRKRNKCVATIM-EESP--VVIDFSDPKHSVLP 145 (405)
T ss_pred eeEEEecc-CCCce--eEEEcc-----CccceeeeccccCCeEEEEEe-cCCc--EEEEecCCceeecc
Confidence 37788988 67652 222222 2245667777554 4444433 2223 33444445555554
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.032 Score=57.93 Aligned_cols=145 Identities=8% Similarity=-0.003 Sum_probs=89.8
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
...|+.+...++.|+++++-+..+..|..... .....+.+|+.+|+.++-+.-+ ..|-.+|+++|+
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH----~k~Vrd~~~s~~g~~fLS~sfD---------~~lKlwDtETG~- 291 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH----RKPVRDASFNNCGTSFLSASFD---------RFLKLWDTETGQ- 291 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcc----hhhhhhhhccccCCeeeeeecc---------eeeeeeccccce-
Confidence 44678888888899999986410222222222 3445778899999986555432 467788999997
Q ss_pred cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
..+-........-..+-||+..++++... ..+|..+|+. +|++ +......- +.+....|-++|+
T Consensus 292 --~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-------d~ki~~wDiR-s~kv--vqeYd~hL----g~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 292 --VLSRFHLDKVPTCVKFHPDNQNIFLVGGS-------DKKIRQWDIR-SGKV--VQEYDRHL----GAILDITFVDEGR 355 (503)
T ss_pred --EEEEEecCCCceeeecCCCCCcEEEEecC-------CCcEEEEecc-chHH--HHHHHhhh----hheeeeEEccCCc
Confidence 44333323333446788999888777633 3458888998 7775 22222222 4566788889998
Q ss_pred -EEEEEeccCCeeeEEEE
Q 004735 314 -LFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 314 -l~~~~~~~~g~~~l~~~ 330 (732)
.+-+++. +...||.+
T Consensus 356 rFissSDd--ks~riWe~ 371 (503)
T KOG0282|consen 356 RFISSSDD--KSVRIWEN 371 (503)
T ss_pred eEeeeccC--ccEEEEEc
Confidence 4444443 55555544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.26 Score=52.74 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=114.0
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 152 ~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
..+.+++......+.+.++|..+. .....+..+ ..-....++|+|+.++...... . ...+.++|..++
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~-~~~~~~~vG-----~~P~~~~~~~~~~~vYV~n~~~-~-----~~~vsvid~~t~ 150 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATN-TVLGSIPVG-----LGPVGLAVDPDGKYVYVANAGN-G-----NNTVSVIDAATN 150 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCccc-ceeeEeeec-----cCCceEEECCCCCEEEEEeccc-C-----CceEEEEeCCCC
Confidence 344567666656678999986641 111111211 1225678999999955543321 1 368999999887
Q ss_pred CccccEEc-ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE--ecCCCCCccccCcCcee
Q 004735 232 NIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC--VAGFDPTIVESPTEPKW 308 (732)
Q Consensus 232 ~~~~~~~l-t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~--~~~~~~~~~~~~~~~~w 308 (732)
+ +... ..+.. ....+++|||++++-.. . ....|.++|.+ +........ .-... .+.....+
T Consensus 151 ~---~~~~~~vG~~-P~~~a~~p~g~~vyv~~-~------~~~~v~vi~~~-~~~v~~~~~~~~~~~~----~~P~~i~v 214 (381)
T COG3391 151 K---VTATIPVGNT-PTGVAVDPDGNKVYVTN-S------DDNTVSVIDTS-GNSVVRGSVGSLVGVG----TGPAGIAV 214 (381)
T ss_pred e---EEEEEecCCC-cceEEECCCCCeEEEEe-c------CCCeEEEEeCC-CcceeccccccccccC----CCCceEEE
Confidence 6 3332 22221 24568899999886554 1 24569999876 333321000 01111 45568899
Q ss_pred CCCCcEEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 309 spDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
++||+.+|+.+.......+..+|..++...... ..... .| ......| +++.+|..... ...++..|
T Consensus 215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~------~~v~~~p---~g~~~yv~~~~--~~~V~vid 281 (381)
T COG3391 215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--AP------RGVAVDP---AGKAAYVANSQ--GGTVSVID 281 (381)
T ss_pred CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CC------CceeECC---CCCEEEEEecC--CCeEEEEe
Confidence 999995555554244467899999888766542 11110 11 1112222 66666665443 35677777
Q ss_pred CCCCceEE
Q 004735 388 DFGHSLSL 395 (732)
Q Consensus 388 ~~~~~~~~ 395 (732)
..+..+..
T Consensus 282 ~~~~~v~~ 289 (381)
T COG3391 282 GATDRVVK 289 (381)
T ss_pred CCCCceee
Confidence 66655443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.16 Score=49.83 Aligned_cols=136 Identities=10% Similarity=0.026 Sum_probs=80.3
Q ss_pred cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEec
Q 004735 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 241 ~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~ 320 (732)
...+.+....|+|||..+|-...| .+|+++++. |...+.-.+.+.. +.+..+.|.+||+.++....
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~D--------r~I~LWnv~--gdceN~~~lkgHs----gAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSD--------RAIVLWNVY--GDCENFWVLKGHS----GAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCc--------ceEEEEecc--ccccceeeecccc----ceeEeeeeccCCCEEEEecC
Confidence 334556678999999977644433 347777765 4445556666765 77889999999994444332
Q ss_pred cCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC
Q 004735 321 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (732)
Q Consensus 321 ~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~ 400 (732)
..+++.+|.++|+..+=..+...+... +.... -|-.++.+...++.-.||-+ ..+...++-...
T Consensus 111 ---Dk~v~~wD~~tG~~~rk~k~h~~~vNs--------~~p~r---rg~~lv~SgsdD~t~kl~D~--R~k~~~~t~~~k 174 (338)
T KOG0265|consen 111 ---DKTVRGWDAETGKRIRKHKGHTSFVNS--------LDPSR---RGPQLVCSGSDDGTLKLWDI--RKKEAIKTFENK 174 (338)
T ss_pred ---CceEEEEecccceeeehhccccceeee--------cCccc---cCCeEEEecCCCceEEEEee--cccchhhccccc
Confidence 367899999998754433332222111 11110 34456666677787778744 344333333334
Q ss_pred CceEEe
Q 004735 401 TDIDNI 406 (732)
Q Consensus 401 ~~v~~~ 406 (732)
..+..+
T Consensus 175 yqltAv 180 (338)
T KOG0265|consen 175 YQLTAV 180 (338)
T ss_pred eeEEEE
Confidence 555555
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.012 Score=60.80 Aligned_cols=173 Identities=13% Similarity=0.135 Sum_probs=96.8
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 152 ~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
+++..++++...++.|..+|+.+ ++..+--.. +-....+..|-|+|++.+-++++ ..+-+++...+
T Consensus 309 pd~~n~fl~G~sd~ki~~wDiRs--~kvvqeYd~---hLg~i~~i~F~~~g~rFissSDd---------ks~riWe~~~~ 374 (503)
T KOG0282|consen 309 PDNQNIFLVGGSDKKIRQWDIRS--GKVVQEYDR---HLGAILDITFVDEGRRFISSSDD---------KSVRIWENRIP 374 (503)
T ss_pred CCCCcEEEEecCCCcEEEEeccc--hHHHHHHHh---hhhheeeeEEccCCceEeeeccC---------ccEEEEEcCCC
Confidence 33446777777778899999887 542221111 12234677899999985554443 24445555544
Q ss_pred CccccEEcccCCCceecc--ccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 232 NIQEPKVLVSGSDFYAFP--RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 232 ~~~~~~~lt~~~~~~~~p--~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
. +..+......+.-| ..+|.|++++-.+. .+.|+++.+..-=.....+.+.+.... ++.-++.+|
T Consensus 375 v---~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~--------dN~i~ifs~~~~~r~nkkK~feGh~va--Gys~~v~fS 441 (503)
T KOG0282|consen 375 V---PIKNIADPEMHTMPCLTLHPNGKWFAAQSM--------DNYIAIFSTVPPFRLNKKKRFEGHSVA--GYSCQVDFS 441 (503)
T ss_pred c---cchhhcchhhccCcceecCCCCCeehhhcc--------CceEEEEecccccccCHhhhhcceecc--CceeeEEEc
Confidence 4 44444444455555 45899998876552 344777665421122223344444222 566788999
Q ss_pred CCCcEEEEEeccCCeeeEEEEeccCCeE-EEecccccccCCCceee
Q 004735 310 SKGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 310 pDg~l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~ 354 (732)
|||+.++..+. .|. ++.+|-.+-+. ..+-..+.......|.|
T Consensus 442 pDG~~l~SGds-dG~--v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 442 PDGRTLCSGDS-DGK--VNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred CCCCeEEeecC-Ccc--EEEeechhhhhhhccccCCcceEEEEecC
Confidence 99996666554 454 66666655332 22222333344556765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.02 Score=65.52 Aligned_cols=259 Identities=13% Similarity=0.145 Sum_probs=137.9
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCC-CCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCC
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAK-AGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ 165 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~ 165 (732)
..++..++|.+ |..--=+=....|+|.+.+|-.+.- .+ ....++...-....-| -+..|....+.++-+...++
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-~~~~~la~~~~h~G~V---~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-ASEEVLATKSKHTGPV---LGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccC-cchHHHhhhcccCCce---eeeeccccCCceeeccCCCC
Confidence 35667888888 6552111123446788777765441 11 2222221110001111 12334444555666766778
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc--CC
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GS 243 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--~~ 243 (732)
+|+++|+.. -..+.+.+...........+|.-.-.+|++..... ....++|+...+. +..+.. +.
T Consensus 140 eI~iWDlnn---~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s--------g~~~iWDlr~~~p--ii~ls~~~~~ 206 (1049)
T KOG0307|consen 140 EILIWDLNK---PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS--------GRAVIWDLRKKKP--IIKLSDTPGR 206 (1049)
T ss_pred cEEEeccCC---cCCCCCCCCCCCcccceEeccchhhhHHhhccCCC--------CCceeccccCCCc--ccccccCCCc
Confidence 999999983 33344443221122333445665555555443322 4566778876541 233332 22
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
.......|.||+..-..+..++.+ ..-|-+.|+.-.- ...+.+.+.. .++-.+.|.+.+. +++++.. +
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~----~PviqlWDlR~as--sP~k~~~~H~----~GilslsWc~~D~~lllSsgk-D 275 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDS----APVIQLWDLRFAS--SPLKILEGHQ----RGILSLSWCPQDPRLLLSSGK-D 275 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCC----CceeEeecccccC--Cchhhhcccc----cceeeeccCCCCchhhhcccC-C
Confidence 345678999988876666655544 2336666765111 2345566665 6788899999775 7766654 3
Q ss_pred CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
.+++.+++.+|+.--=.+ ....|.. ++.|-+ .+-.++..+.-+|.-.||-+-
T Consensus 276 --~~ii~wN~~tgEvl~~~p-----~~~nW~f---dv~w~p---r~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 276 --NRIICWNPNTGEVLGELP-----AQGNWCF---DVQWCP---RNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred --CCeeEecCCCceEeeecC-----CCCccee---eeeecC---CCcchhhhheeccceeeeeee
Confidence 458888998886432111 1223332 233332 333344455567777788654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.06 Score=52.86 Aligned_cols=239 Identities=10% Similarity=0.088 Sum_probs=127.7
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeE-----eeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVS-----YADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~-----~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
|+++++.+ .+...+|-|-+++.-+ |+.+ .|.-..++ .+. ..-..||.|...++--+.+ ..|
T Consensus 221 FSPDgqyL-vsgSvDGFiEVWny~~--GKlrKDLkYQAqd-~fMMmd~aVlci~FSRDsEMlAsGsqD---------GkI 287 (508)
T KOG0275|consen 221 FSPDGQYL-VSGSVDGFIEVWNYTT--GKLRKDLKYQAQD-NFMMMDDAVLCISFSRDSEMLASGSQD---------GKI 287 (508)
T ss_pred eCCCCceE-eeccccceeeeehhcc--chhhhhhhhhhhc-ceeecccceEEEeecccHHHhhccCcC---------CcE
Confidence 44444444 3445677677777766 5443 23322111 111 1223477777654332221 355
Q ss_pred EEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcccc
Q 004735 224 VAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~ 302 (732)
-++.+.+|.- .++.. ....-+...+||.|+.+|.-.+.+. .+.+.-++ +|+. ++.+.+.. .+
T Consensus 288 KvWri~tG~C--lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~--------tvRiHGlK-SGK~--LKEfrGHs----Sy 350 (508)
T KOG0275|consen 288 KVWRIETGQC--LRRFDRAHTKGVTCLSFSRDNSQILSASFDQ--------TVRIHGLK-SGKC--LKEFRGHS----SY 350 (508)
T ss_pred EEEEEecchH--HHHhhhhhccCeeEEEEccCcchhhcccccc--------eEEEeccc-cchh--HHHhcCcc----cc
Confidence 5555566651 22222 1112345578999999997665333 35666677 7765 56666765 77
Q ss_pred CcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 303 ~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
+....+++||. ++ .+.. .|.-.+| +..+++.-.-. +...+. ..+++..+|. +...+++. ++ .
T Consensus 351 vn~a~ft~dG~~ii-saSs-DgtvkvW--~~KtteC~~Tfk~~~~d~-------~vnsv~~~PK--npeh~iVC-Nr--s 414 (508)
T KOG0275|consen 351 VNEATFTDDGHHII-SASS-DGTVKVW--HGKTTECLSTFKPLGTDY-------PVNSVILLPK--NPEHFIVC-NR--S 414 (508)
T ss_pred ccceEEcCCCCeEE-EecC-CccEEEe--cCcchhhhhhccCCCCcc-------cceeEEEcCC--CCceEEEE-cC--C
Confidence 88999999999 54 3333 4554444 44454322111 111010 1223344431 22344433 33 2
Q ss_pred EEEEEEECCCCceEEeccCCC---c-eEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 381 SYLGILDDFGHSLSLLDIPFT---D-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 381 ~~ly~~~~~~~~~~~lt~~~~---~-v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
..+|+++..|.-++..+.+.. + +....++.+.++|..+.. ..+|-+...+|+++
T Consensus 415 ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED---~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 415 NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED---GVLYCFSVLSGKLE 472 (508)
T ss_pred CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC---cEEEEEEeecCcee
Confidence 568999999888888887643 2 333345555565555433 35888887787764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.15 Score=55.79 Aligned_cols=158 Identities=14% Similarity=0.119 Sum_probs=93.6
Q ss_pred cCCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 145 YGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 145 ~g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
|.|+.+.++.+ .++|... .+.|-.+|+.+ +... ++...............+||++.|+.... ..-|
T Consensus 20 YtGG~~~~s~nG~~L~t~~-~d~Vi~idv~t--~~~~-l~s~~~ed~d~ita~~l~~d~~~L~~a~r---------s~ll 86 (775)
T KOG0319|consen 20 YTGGPVAWSSNGQHLYTAC-GDRVIIIDVAT--GSIA-LPSGSNEDEDEITALALTPDEEVLVTASR---------SQLL 86 (775)
T ss_pred ecCCceeECCCCCEEEEec-CceEEEEEccC--Ccee-cccCCccchhhhheeeecCCccEEEEeec---------cceE
Confidence 66677777643 5666643 23578888887 5432 44443322445567789999988766544 2456
Q ss_pred EEEEcCCCCccccEEcc--cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 224 VAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt--~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
-++++.+|+ ..+.- .+.......+++|-|..|+-.. ....+-|+|+. ++-. ...+.+.. +
T Consensus 87 rv~~L~tgk---~irswKa~He~Pvi~ma~~~~g~LlAtgg--------aD~~v~VWdi~-~~~~--th~fkG~g----G 148 (775)
T KOG0319|consen 87 RVWSLPTGK---LIRSWKAIHEAPVITMAFDPTGTLLATGG--------ADGRVKVWDIK-NGYC--THSFKGHG----G 148 (775)
T ss_pred EEEEcccch---HhHhHhhccCCCeEEEEEcCCCceEEecc--------ccceEEEEEee-CCEE--EEEecCCC----c
Confidence 667888777 43332 2344455678899995444332 23457888888 5544 45566764 5
Q ss_pred cCcCceeCCCCc--EEEEEeccCCeeeEEEEeccCCe
Q 004735 302 SPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 302 ~~~~~~wspDg~--l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
-+....|.|+-. +++.... .+ .++.+|...+.
T Consensus 149 vVssl~F~~~~~~~lL~sg~~-D~--~v~vwnl~~~~ 182 (775)
T KOG0319|consen 149 VVSSLLFHPHWNRWLLASGAT-DG--TVRVWNLNDKR 182 (775)
T ss_pred eEEEEEeCCccchhheeecCC-Cc--eEEEEEcccCc
Confidence 566677777754 4444333 34 35555665443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.55 Score=45.44 Aligned_cols=142 Identities=11% Similarity=-0.003 Sum_probs=82.5
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc----eeeeEEecCCC
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD----VYKRVCVAGFD 296 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~----~~~~~~~~~~~ 296 (732)
+.+-++|..+|+ ......-...+....||++|..+++.....-+ ....|.++|+..+.. -.....+.-.+
T Consensus 74 ~t~kLWDv~tGk---~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg---~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 74 QTAKLWDVETGK---QLATWKTNSPVKRVDFSFGGNLILASTDKQMG---YTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred ceeEEEEcCCCc---EEEEeecCCeeEEEeeccCCcEEEEEehhhcC---cceEEEEEEccCChhhhcccCceEEecCCc
Confidence 455666888887 44444434445567899999998887744444 356688888862210 01123333333
Q ss_pred CCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEE
Q 004735 297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (732)
Q Consensus 297 ~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~ 376 (732)
..+....|+|-|+.++.... .| .|-++|+.+|+...=... ... ..++++.+. .+...++++.
T Consensus 148 ----skit~a~Wg~l~~~ii~Ghe-~G--~is~~da~~g~~~v~s~~--~h~-----~~Ind~q~s----~d~T~FiT~s 209 (327)
T KOG0643|consen 148 ----SKITSALWGPLGETIIAGHE-DG--SISIYDARTGKELVDSDE--EHS-----SKINDLQFS----RDRTYFITGS 209 (327)
T ss_pred ----cceeeeeecccCCEEEEecC-CC--cEEEEEcccCceeeechh--hhc-----ccccccccc----CCcceEEecc
Confidence 45678889999984444444 44 466678888743221111 101 134455665 5667777887
Q ss_pred ECCEEEEEEE
Q 004735 377 QNGRSYLGIL 386 (732)
Q Consensus 377 ~~g~~~ly~~ 386 (732)
++....|+-+
T Consensus 210 ~Dttakl~D~ 219 (327)
T KOG0643|consen 210 KDTTAKLVDV 219 (327)
T ss_pred cCccceeeec
Confidence 7777777633
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.045 Score=54.00 Aligned_cols=204 Identities=18% Similarity=0.268 Sum_probs=99.4
Q ss_pred HhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC-cccCCCCCcccccccccCCceeEEECCEEEEEe
Q 004735 84 VSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSN 161 (732)
Q Consensus 84 i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~ 161 (732)
+......++++.|.| .+.+|.+...+ + .|+..+.. |+. +.+.-.+ ...+-+-.| ..++..+.+.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~---~--~i~els~~--G~vlr~i~l~g------~~D~EgI~y-~g~~~~vl~~ 82 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEP---G--EIYELSLD--GKVLRRIPLDG------FGDYEGITY-LGNGRYVLSE 82 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTT---T--EEEEEETT----EEEEEE-SS-------SSEEEEEE--STTEEEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCC---C--EEEEEcCC--CCEEEEEeCCC------CCCceeEEE-ECCCEEEEEE
Confidence 333344588999999 78898887644 2 46777654 232 2221111 111212222 3455777788
Q ss_pred CCCCeEEEEeCCCCCCC-----ceecCCCC-CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc--CCCCc
Q 004735 162 YKDQRLYKHSIDSKDSS-----PLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL--NGQNI 233 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~-----~~~lt~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~--~~~~~ 233 (732)
++.++|+.++++..+.. .+.++-+. ......+-..+|+|.+++++.+.+..+ ..||.++. ....
T Consensus 83 Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-------~~l~~~~~~~~~~~- 154 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-------KRLYEVNGFPGGFD- 154 (248)
T ss_dssp TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-------EEEEEEESTT-SS--
T ss_pred cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-------hhhEEEccccCccc-
Confidence 78889999998431011 12222111 011233566889999999888776543 67888886 2222
Q ss_pred cccEEc-----ccCC---CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCC---CCcccc
Q 004735 234 QEPKVL-----VSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD---PTIVES 302 (732)
Q Consensus 234 ~~~~~l-----t~~~---~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~---~~~~~~ 302 (732)
.... .... ...+...+.|....|+.++ +.+ ..|..+|. +|++.....+.... ......
T Consensus 155 --~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS-~es------~~l~~~d~--~G~~~~~~~L~~g~~gl~~~~~Q 223 (248)
T PF06977_consen 155 --LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILS-DES------RLLLELDR--QGRVVSSLSLDRGFHGLSKDIPQ 223 (248)
T ss_dssp ---EEEE-HHHH-HT--SS---EEEEETTTTEEEEEE-TTT------TEEEEE-T--T--EEEEEE-STTGGG-SS---S
T ss_pred --eeeccccccccccceeccccceEEcCCCCeEEEEE-CCC------CeEEEECC--CCCEEEEEEeCCcccCcccccCC
Confidence 1111 1001 1124456788877888777 443 33777774 57765444444321 000123
Q ss_pred CcCceeCCCCcEEEEEec
Q 004735 303 PTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 303 ~~~~~wspDg~l~~~~~~ 320 (732)
...+++++||+||.++..
T Consensus 224 pEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 224 PEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp EEEEEE-TT--EEEEETT
T ss_pred ccEEEECCCCCEEEEcCC
Confidence 567889999988877653
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.28 Score=54.45 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=93.7
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
....++.|+||+.++++..+ ...|++.... +. .+.+..+.. ...|.|+++| ++ |+..+. +
T Consensus 344 ~~~s~avS~~g~~~A~~~~~--------~~~l~~~~~g-~~---~~~~~~g~~-Lt~PS~d~~g-~v-Wtv~~g-----~ 403 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGS--------RTTLYTVSPG-QP---ARALTSGST-LTRPSFSPQD-WV-WTAGPG-----G 403 (573)
T ss_pred cccceeecCCCceEEEecCC--------CcEEEEecCC-Cc---ceeeecCCC-ccCCcccCCC-CE-EEeeCC-----C
Confidence 34567899999998887332 1478877763 34 556655554 5679999998 55 444232 1
Q ss_pred ccEEEEEEecCCCceee--eEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEE--E-eccCCeEEEecccc-
Q 004735 272 KAELWVGYISENGDVYK--RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK--W-IESNNEVLAIYSLD- 344 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~--~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~--~-d~~~g~~~~l~~~~- 344 (732)
..+|..+.-+.+|+... .....-...+ ...+..++.|+||. ++++... .|..+|++ + ....|+.+.|+...
T Consensus 404 ~~~vv~~~~~g~~~~~~~~~~~v~~~~l~-g~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~G~P~~L~~~~~ 481 (573)
T PRK13614 404 NGRIVAYRPTGVAEGAQAPTVTLTADWLA-GRTVKELRVSREGVRALVISEQ-NGKSRVQVAGIVRNEDGTPRELTAPIT 481 (573)
T ss_pred CceEEEEecCCCcccccccceeecccccC-CCeeEEEEECCCccEEEEEEEe-CCccEEEEEEEEeCCCCCeEEccCcee
Confidence 23455544322222211 1111111100 02378899999998 7776654 45544542 3 23456666665321
Q ss_pred ----cccCCCceeecccceeeeeecCCCCEEEEEE-EECCEEEEEEEECCCCceEEec
Q 004735 345 ----AEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 345 ----~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s-~~~g~~~ly~~~~~~~~~~~lt 397 (732)
....+..|. ++..|++.. ..++...++++.++++..+.+.
T Consensus 482 ~~~~~~~~sl~W~-------------~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 482 LAADSDADTGAWV-------------GDSTVVVTKASATSNVVPELLSVDAGQPQQLA 526 (573)
T ss_pred cccCCCcceeEEc-------------CCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence 122334455 455555554 4455566788888666655444
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.02 Score=62.35 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=78.4
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc---------c--------HHHHHHHHCCCE
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---------N--------LSIQYWTSRGWA 526 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~---------~--------~~~~~l~~~G~~ 526 (732)
+.+... .+..+..|++...+ ..+..|+||++.|||++..-... . .....|.+. ..
T Consensus 16 l~~~~~-~~~~lfyw~~~s~~------~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an 87 (415)
T PF00450_consen 16 LPVNDN-ENAHLFYWFFESRN------DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-AN 87 (415)
T ss_dssp EEECTT-TTEEEEEEEEE-SS------GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SE
T ss_pred EecCCC-CCcEEEEEEEEeCC------CCCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cc
Confidence 344443 67889988886655 24567999999999986432210 0 011122222 67
Q ss_pred EEEEcCCCCCCCChhhHHhhccCCC-cccHHHHHHHHHHH-HhcCCCCCCcEEEEEcChHHHHHHHHHh-----C-----
Q 004735 527 FVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCATFL-VGSGKADEKRLCITGGSAGGYTTLAALA-----F----- 594 (732)
Q Consensus 527 v~~~d~rG~~g~g~~~~~~~~~~~~-~~~~~D~~~~i~~l-~~~~~~d~~ri~i~G~S~GG~~a~~~~~-----~----- 594 (732)
++.+|.+-.+|+........ ..++ ....+|+..++... ...+.....++.|.|-|+||..+-.++. .
T Consensus 88 ~l~iD~PvGtGfS~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~ 166 (415)
T PF00450_consen 88 LLFIDQPVGTGFSYGNDPSD-YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQ 166 (415)
T ss_dssp EEEE--STTSTT-EESSGGG-GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--S
T ss_pred eEEEeecCceEEeecccccc-ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccc
Confidence 89999665566544322221 1111 12355566665533 3445556679999999999987755542 2
Q ss_pred -CCcceEEEeecCcCCHH
Q 004735 595 -RDTFKAGASLYGVADLS 611 (732)
Q Consensus 595 -p~~~~a~v~~~~~~d~~ 611 (732)
.-.++++++.+|+.+..
T Consensus 167 ~~inLkGi~IGng~~dp~ 184 (415)
T PF00450_consen 167 PKINLKGIAIGNGWIDPR 184 (415)
T ss_dssp TTSEEEEEEEESE-SBHH
T ss_pred cccccccceecCcccccc
Confidence 34589999999998764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.89 Score=47.66 Aligned_cols=149 Identities=9% Similarity=0.045 Sum_probs=91.0
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+++++...+..|.+-++|..+. ...+++-.. .....-..|+|+++.++...++. ..+-.+|+++..
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r-~iLR~~~ah----~apv~~~~f~~~d~t~l~s~sDd--------~v~k~~d~s~a~- 144 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSR-VILRQLYAH----QAPVHVTKFSPQDNTMLVSGSDD--------KVVKYWDLSTAY- 144 (487)
T ss_pred CCeEEEccCCcCcEEEeccccH-HHHHHHhhc----cCceeEEEecccCCeEEEecCCC--------ceEEEEEcCCcE-
Confidence 5577777777788888996530 123444333 22334456999999876666544 344455777665
Q ss_pred cccE-EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 234 QEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 234 ~~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
+. .|....+.+..-.|+|-..+|++.. .- ...|.++|+. .-+ .++..+... ..+..+.+-|.|
T Consensus 145 --v~~~l~~htDYVR~g~~~~~~~hivvtG-sY------Dg~vrl~DtR-~~~-~~v~elnhg-----~pVe~vl~lpsg 208 (487)
T KOG0310|consen 145 --VQAELSGHTDYVRCGDISPANDHIVVTG-SY------DGKVRLWDTR-SLT-SRVVELNHG-----CPVESVLALPSG 208 (487)
T ss_pred --EEEEecCCcceeEeeccccCCCeEEEec-CC------CceEEEEEec-cCC-ceeEEecCC-----CceeeEEEcCCC
Confidence 42 3445566777788999888887765 22 2347777876 222 223334333 456788888988
Q ss_pred cEEEEEeccCCeeeEEEEeccCCe
Q 004735 313 ELFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 313 ~l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
.++.++ |..++-.+|+.+|.
T Consensus 209 s~iasA----gGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 209 SLIASA----GGNSVKVWDLTTGG 228 (487)
T ss_pred CEEEEc----CCCeEEEEEecCCc
Confidence 855543 33556677887553
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.043 Score=55.53 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=77.3
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHC---C------CEEEEEcCCCCC
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR---G------WAFVDVNYGGST 536 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~---G------~~v~~~d~rG~~ 536 (732)
|++...|-.||..-..|+... ..++.--++++||.|++. ..|...+..|... | |.|++|..+|
T Consensus 127 ykTeIeGL~iHFlhvk~p~~k----~~k~v~PlLl~HGwPGsv--~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG-- 198 (469)
T KOG2565|consen 127 YKTEIEGLKIHFLHVKPPQKK----KKKKVKPLLLLHGWPGSV--REFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG-- 198 (469)
T ss_pred hhhhhcceeEEEEEecCCccc----cCCcccceEEecCCCchH--HHHHhhhhhhcCccccCCccceeEEEeccCCCC--
Confidence 444446888887777776421 233444567899998664 4444556666543 3 6799999875
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeec
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY 605 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~ 605 (732)
||.+- ... ..| .....++..++-|.-+ +.-++..|-|.-+|..++..++. +|+.+.+.-+..
T Consensus 199 -ygwSd--~~s-k~G-Fn~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 199 -YGWSD--APS-KTG-FNAAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred -cccCc--CCc-cCC-ccHHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 44331 111 112 1133344444444333 33579999999999999999998 999887765443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.26 Score=47.24 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=94.0
Q ss_pred ccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCee
Q 004735 248 FPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 325 (732)
Q Consensus 248 ~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~ 325 (732)
...||| =..+||.....+-+. .++++|++.++...+.++...-+.-. ..+.+++|++.-. +++.+.. .|.-
T Consensus 13 svqfSPf~~nrLavAt~q~yGl-~G~G~L~ile~~~~~gi~e~~s~d~~-----D~LfdV~Wse~~e~~~~~a~G-DGSL 85 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGL-AGNGRLFILEVTDPKGIQECQSYDTE-----DGLFDVAWSENHENQVIAASG-DGSL 85 (311)
T ss_pred eeEecccccchhheeehhhccc-ccCceEEEEecCCCCCeEEEEeeecc-----cceeEeeecCCCcceEEEEec-CceE
Confidence 467888 234577665444332 24678999999623444433333332 5688999999877 6666655 6776
Q ss_pred eEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEE
Q 004735 326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN 405 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~ 405 (732)
+||-.....+-+...-+.+.++.+..|.. ..+..++++.-++.-.||..+.. ..++..+....-|..
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~------------~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~ 152 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNT------------VRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQ 152 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEecccc------------ccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEE
Confidence 67653222222222224445555666664 45666777777888889876543 233333333333443
Q ss_pred e--eEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 406 I--TLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 406 ~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
. +.....+ |.+++.++...||-++..++
T Consensus 153 a~~sp~~~nl-fas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 153 AAFSPHIPNL-FASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred EecCCCCCCe-EEEccCCceEEEEEecCCCc
Confidence 3 2223334 44445566677887776643
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=2.1 Score=46.14 Aligned_cols=231 Identities=12% Similarity=0.083 Sum_probs=110.8
Q ss_pred ceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEEeC
Q 004735 93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSI 172 (732)
Q Consensus 93 ~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d~ 172 (732)
+|... ++++|+... ++ .++..+..+| +..+-...+... ..+-.+.++.+++. ..++.|+.+|.
T Consensus 115 ~~~v~-~~~v~v~~~----~g--~l~ald~~tG-~~~W~~~~~~~~--------~ssP~v~~~~v~v~-~~~g~l~ald~ 177 (394)
T PRK11138 115 GVTVA-GGKVYIGSE----KG--QVYALNAEDG-EVAWQTKVAGEA--------LSRPVVSDGLVLVH-TSNGMLQALNE 177 (394)
T ss_pred ccEEE-CCEEEEEcC----CC--EEEEEECCCC-CCcccccCCCce--------ecCCEEECCEEEEE-CCCCEEEEEEc
Confidence 34545 677776432 23 3677776665 444433322000 11122345565554 45678999999
Q ss_pred CCCCCCce-ecCCCCCCCCe-EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC-------
Q 004735 173 DSKDSSPL-PITPDYGEPLV-SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS------- 243 (732)
Q Consensus 173 ~~~~~~~~-~lt~~~~~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~------- 243 (732)
++ |+.. +.......... ....|... +..+++... ...|+.+|.++|+......+....
T Consensus 178 ~t--G~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~---------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 178 SD--GAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGD---------NGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred cC--CCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcC---------CCEEEEEEccCChhhheeccccCCCccchhc
Confidence 87 5432 22211000000 01233332 233333322 257888998888621111111110
Q ss_pred --CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 244 --DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 244 --~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
.....|.. .+..|++... ...|+.+|+. +|+..+...+. ....+.. .++++|+....
T Consensus 245 ~~~~~~sP~v--~~~~vy~~~~--------~g~l~ald~~-tG~~~W~~~~~--------~~~~~~~-~~~~vy~~~~~- 303 (394)
T PRK11138 245 LVDVDTTPVV--VGGVVYALAY--------NGNLVALDLR-SGQIVWKREYG--------SVNDFAV-DGGRIYLVDQN- 303 (394)
T ss_pred ccccCCCcEE--ECCEEEEEEc--------CCeEEEEECC-CCCEEEeecCC--------CccCcEE-ECCEEEEEcCC-
Confidence 01123333 3455655541 2459999998 88764443221 1122332 23446665433
Q ss_pred CCeeeEEEEeccCCeEEEeccc--ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 322 NGFWNLHKWIESNNEVLAIYSL--DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
..|+.+|+.+|+..--.+. ......|. . .++.+|+.. .+| .|+.+|.++|+..
T Consensus 304 ---g~l~ald~~tG~~~W~~~~~~~~~~~sp~---------v-----~~g~l~v~~-~~G--~l~~ld~~tG~~~ 358 (394)
T PRK11138 304 ---DRVYALDTRGGVELWSQSDLLHRLLTAPV---------L-----YNGYLVVGD-SEG--YLHWINREDGRFV 358 (394)
T ss_pred ---CeEEEEECCCCcEEEcccccCCCcccCCE---------E-----ECCEEEEEe-CCC--EEEEEECCCCCEE
Confidence 3599999988864321111 11112221 1 345666553 344 6888899888754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.2 Score=43.26 Aligned_cols=152 Identities=8% Similarity=0.000 Sum_probs=90.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC---
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--- 232 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~--- 232 (732)
..+.....++.+-++|+.+ |+....-.. +.......|+++|++++++.+...+.+ ..|.++|+....
T Consensus 65 ~~liTGSAD~t~kLWDv~t--Gk~la~~k~----~~~Vk~~~F~~~gn~~l~~tD~~mg~~----~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVET--GKQLATWKT----NSPVKRVDFSFGGNLILASTDKQMGYT----CFVSVFDIRDDSSDI 134 (327)
T ss_pred ceeeeccccceeEEEEcCC--CcEEEEeec----CCeeEEEeeccCCcEEEEEehhhcCcc----eEEEEEEccCChhhh
Confidence 4555666777888899988 544332222 223344569999999888887665442 566667665211
Q ss_pred -c-cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 233 -I-QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 233 -~-~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
. .+...+..........-|+|-|+.|.+-. ....|-.+|+. +|... +....... ..+..+++|+
T Consensus 135 ~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh--------e~G~is~~da~-~g~~~-v~s~~~h~----~~Ind~q~s~ 200 (327)
T KOG0643|consen 135 DSEEPYLKIPTPDSKITSALWGPLGETIIAGH--------EDGSISIYDAR-TGKEL-VDSDEEHS----SKINDLQFSR 200 (327)
T ss_pred cccCceEEecCCccceeeeeecccCCEEEEec--------CCCcEEEEEcc-cCcee-eechhhhc----cccccccccC
Confidence 0 01233444445566778999999886543 23458889988 66421 11112222 5678899999
Q ss_pred CCcEEEEEeccCCeeeEEEEeccC
Q 004735 311 KGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 311 Dg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
|...+.++.. .....| +|..+
T Consensus 201 d~T~FiT~s~-Dttakl--~D~~t 221 (327)
T KOG0643|consen 201 DRTYFITGSK-DTTAKL--VDVRT 221 (327)
T ss_pred CcceEEeccc-Ccccee--eeccc
Confidence 9864444443 333334 45444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.92 Score=54.07 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=51.2
Q ss_pred cccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEE
Q 004735 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~ 328 (732)
.+|-.||+++|....+.... ....+.|++-+ |++.. ..+.- + +-...++|.|.|.++..+.+..+...|.
T Consensus 215 ISWRGDG~yFAVss~~~~~~--~~R~iRVy~Re--G~L~s---tSE~v-~--gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETG--SRRVIRVYSRE--GELQS---TSEPV-D--GLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred EEECCCCcEEEEEEEEcCCC--ceeEEEEECCC--ceEEe---ccccC-C--CccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 46888888877665422210 13557777643 55421 11111 1 3345789999999655555545566666
Q ss_pred EEeccCCeEEEec----ccccccCCCceee
Q 004735 329 KWIESNNEVLAIY----SLDAEFSRPLWVF 354 (732)
Q Consensus 329 ~~d~~~g~~~~l~----~~~~~~~~~~w~~ 354 (732)
.+.-.|-+....+ +.+..+....|..
T Consensus 285 FfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 285 FFERNGLRHGEFTLRFDPEEEKVIELAWNS 314 (928)
T ss_pred EEecCCcEeeeEecCCCCCCceeeEEEECC
Confidence 6655442222221 2233344556665
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.45 Score=47.02 Aligned_cols=190 Identities=13% Similarity=-0.006 Sum_probs=96.3
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.++.+++. ..++.|+.+|..+ |+.. +..... .....+ ..++..|++... ...|+.+|..+|
T Consensus 35 ~~~~v~~~-~~~~~l~~~d~~t--G~~~W~~~~~~----~~~~~~--~~~~~~v~v~~~---------~~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVA-SGDGNLYALDAKT--GKVLWRFDLPG----PISGAP--VVDGGRVYVGTS---------DGSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEE-ETTSEEEEEETTT--SEEEEEEECSS----CGGSGE--EEETTEEEEEET---------TSEEEEEETTTS
T ss_pred eCCEEEEE-cCCCEEEEEECCC--CCEEEEeeccc----ccccee--eecccccccccc---------eeeeEecccCCc
Confidence 55566555 4677899999877 5432 222110 001112 235555555442 158999998888
Q ss_pred CccccEEc---cc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc-----c
Q 004735 232 NIQEPKVL---VS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV-----E 301 (732)
Q Consensus 232 ~~~~~~~l---t~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~-----~ 301 (732)
+ +.-- .. .......+....+|..+++.. ....|+.+|++ +|+..+............ .
T Consensus 97 ~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~ 164 (238)
T PF13360_consen 97 K---VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT--------SSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSD 164 (238)
T ss_dssp C---EEEEEEE-SSCTCSTB--SEEEEETTEEEEEE--------TCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETT
T ss_pred c---eeeeeccccccccccccccCceEecCEEEEEe--------ccCcEEEEecC-CCcEEEEeecCCCCCCcceeeecc
Confidence 7 3221 11 111223334444577776655 24569999998 898755444422110000 0
Q ss_pred cCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
....+... +|.++ .... .+. ++.+|..+|+..- .... ....-. +.. +++.+|+.. .+ .
T Consensus 165 ~~~~~~~~-~~~v~-~~~~-~g~--~~~~d~~tg~~~w-~~~~---~~~~~~-------~~~---~~~~l~~~~-~~--~ 222 (238)
T PF13360_consen 165 INGSPVIS-DGRVY-VSSG-DGR--VVAVDLATGEKLW-SKPI---SGIYSL-------PSV---DGGTLYVTS-SD--G 222 (238)
T ss_dssp EEEEEECC-TTEEE-EECC-TSS--EEEEETTTTEEEE-EECS---S-ECEC-------EEC---CCTEEEEEE-TT--T
T ss_pred cccceEEE-CCEEE-EEcC-CCe--EEEEECCCCCEEE-EecC---CCccCC-------cee---eCCEEEEEe-CC--C
Confidence 01223333 44444 4433 232 6666988887432 1111 111100 111 677777776 33 5
Q ss_pred EEEEEECCCCceE
Q 004735 382 YLGILDDFGHSLS 394 (732)
Q Consensus 382 ~ly~~~~~~~~~~ 394 (732)
+|+.+|+.+|+..
T Consensus 223 ~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 223 RLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCCEE
Confidence 7888999998754
|
... |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.81 Score=50.44 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=116.5
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCcee--cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLP--ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~--lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
.++++...++.++++|+.+ +..-. +... .-......+++|+..++++..+ .-++++|+..-+.
T Consensus 162 ~lL~sg~~D~~v~vwnl~~--~~tcl~~~~~H----~S~vtsL~~~~d~~~~ls~~RD---------kvi~vwd~~~~~~ 226 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLND--KRTCLHTMILH----KSAVTSLAFSEDSLELLSVGRD---------KVIIVWDLVQYKK 226 (775)
T ss_pred hheeecCCCceEEEEEccc--CchHHHHHHhh----hhheeeeeeccCCceEEEeccC---------cEEEEeehhhhhh
Confidence 4667777788999999985 33311 1111 2234567799999988887653 4677778754330
Q ss_pred cccEEcccCCCceecccc---CCCCCe-EEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 234 QEPKVLVSGSDFYAFPRM---DPRGER-MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~---SPDG~~-la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
.+.+..-. ...+..+ +-+|+. +.++. . ..+.+..+|.+ +++....+.-+..+ .-..-....
T Consensus 227 --l~~lp~ye-~~E~vv~l~~~~~~~~~~~~Ta-G------~~g~~~~~d~e-s~~~~~~~~~~~~~----e~~~~~~~~ 291 (775)
T KOG0319|consen 227 --LKTLPLYE-SLESVVRLREELGGKGEYIITA-G------GSGVVQYWDSE-SGKCVYKQRQSDSE----EIDHLLAIE 291 (775)
T ss_pred --hheechhh-heeeEEEechhcCCcceEEEEe-c------CCceEEEEecc-cchhhhhhccCCch----hhhcceecc
Confidence 12222111 1111111 223331 33333 2 23346777776 66542222212111 111222333
Q ss_pred CCCcEEEEEeccCCeeeEEEEeccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 310 SKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 310 pDg~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
.+++++.++.. ++|+.+|.++.++. +|.....++ -++.|+.+ +.+.+++.+ ..+.-++| +.
T Consensus 292 ~~~~~l~vtae----Qnl~l~d~~~l~i~k~ivG~ndEI---------~Dm~~lG~--e~~~laVAT-Ns~~lr~y--~~ 353 (775)
T KOG0319|consen 292 SMSQLLLVTAE----QNLFLYDEDELTIVKQIVGYNDEI---------LDMKFLGP--EESHLAVAT-NSPELRLY--TL 353 (775)
T ss_pred ccCceEEEEcc----ceEEEEEccccEEehhhcCCchhh---------eeeeecCC--ccceEEEEe-CCCceEEE--ec
Confidence 45554444443 46888888776643 343222222 23334320 334455444 45555666 66
Q ss_pred CCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 389 FGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 389 ~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
.+..-..+......|-+++.-....++.+.+.+....+|+++
T Consensus 354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 666666555556667777422334666777777777799984
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.63 Score=52.32 Aligned_cols=167 Identities=11% Similarity=0.183 Sum_probs=92.0
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-c-ccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q-EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~-~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
....++.|+||+.++++..+. ..||+-.+.++.. . ..+.+..+. ....|.|.++| +| |+. +...
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~--------~~l~vg~~~~~~~~~~~~~~~~~~~-~Lt~PS~d~~g-~v-Wtv-d~~~-- 429 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADG--------DSVYVGSLTPGASIGVHSWGVTADG-RLTSPSWDGRG-DL-WVV-DRDP-- 429 (599)
T ss_pred CccceEEcCCCceEEEEcCCC--------cEEEEeccCCCCccccccceeeccC-cccCCcCcCCC-CE-EEe-cCCC--
Confidence 445678999999988884321 5777766544430 0 011233333 35679999998 55 444 2211
Q ss_pred CCccE-EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEE--EEec-cCCeEEEec---
Q 004735 270 WDKAE-LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIE-SNNEVLAIY--- 341 (732)
Q Consensus 270 ~~~~~-l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~--~~d~-~~g~~~~l~--- 341 (732)
...+ |.+.. . +|+...+.. .... . ..+..++.|+||. ++++... .+..+|+ .+-- ..|. +.|+
T Consensus 430 -~~~~vl~v~~-~-~G~~~~V~~-~~l~-g--~~I~~lrvSrDG~RvAvv~~~-~g~~~v~va~V~R~~~G~-~~l~~~~ 500 (599)
T PRK13613 430 -ADPRLLWLLQ-G-DGEPVEVRT-PELD-G--HRVVAVRVARDGVRVALIVEK-DGRRSLQIGRIVRDAKAV-VSVEEFR 500 (599)
T ss_pred -CCceEEEEEc-C-CCcEEEeec-cccC-C--CEeEEEEECCCccEEEEEEec-CCCcEEEEEEEEeCCCCc-EEeeccE
Confidence 1223 44444 3 566543332 1211 1 2588899999998 7777665 3434443 4433 3343 4343
Q ss_pred ---ccccccCCCceeecccceeeeeecCCCCEEEEEE-EECCEEEEEEEECCCCceE
Q 004735 342 ---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 342 ---~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s-~~~g~~~ly~~~~~~~~~~ 394 (732)
..-.+..+..|. ++..|++.. ...+...+|++++++....
T Consensus 501 ~l~~~l~~v~~~~W~-------------~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~ 544 (599)
T PRK13613 501 SLAPELEDVTDMSWA-------------GDSQLVVLGREEGGVQQARYVQVDGSTPP 544 (599)
T ss_pred EeccCCCccceeEEc-------------CCCEEEEEeccCCCCcceEEEecCCcCcc
Confidence 222233344555 556666644 3444677999999877654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.47 Score=50.51 Aligned_cols=198 Identities=12% Similarity=0.047 Sum_probs=105.4
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC----
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP---- 269 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~---- 269 (732)
.++.|||-++.|+|-.....+.+ ..+-++.+-+++......|..- ......|--.|.+|++--.++...-
T Consensus 350 r~FswsP~~~llAYwtpe~~~~p----arvtL~evPs~~~iRt~nlfnV--sDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAYWTPETNNIP----ARVTLMEVPSKREIRTKNLFNV--SDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred cCcccCCCcceEEEEcccccCCc----ceEEEEecCccceeeeccceee--eccEEEeccCCcEEEEEEEeeccccccce
Confidence 67889999999999876555443 4555566655541001112211 1234678889999988664544321
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEec-cCCeeeEEEEeccCCeEEEecccc-cc
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR-KNGFWNLHKWIESNNEVLAIYSLD-AE 346 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~-~~g~~~l~~~d~~~g~~~~l~~~~-~~ 346 (732)
..+-+|+.++-. . ..+..+.-. ..+-.++|-|.|. +..++.. ....-..|.+....++.+.+...+ ..
T Consensus 424 f~n~eIfrireK---d-Ipve~velk-----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~ 494 (698)
T KOG2314|consen 424 FSNLEIFRIREK---D-IPVEVVELK-----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF 494 (698)
T ss_pred EeeEEEEEeecc---C-CCceeeecc-----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc
Confidence 011233333211 1 112222222 3456789999998 5555433 223445666665455555544222 22
Q ss_pred cCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC-CceEEe-eEeCCEEEEEEe
Q 004735 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF-TDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~-~~v~~~-~~~~~~~~~~~~ 418 (732)
.....|+| .|+.++...-......|+-+|++-...+....+. ...+.+ .++.++++..++
T Consensus 495 ~N~vfwsP------------kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 495 ANTVFWSP------------KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred cceEEEcC------------CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 33445665 7777777665555667888887654444443332 122333 445555555544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.24 Score=48.94 Aligned_cols=157 Identities=12% Similarity=0.095 Sum_probs=76.6
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 321 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~ 321 (732)
.+.+...+||.||++||-++.| ..|.+++++ +=+.++-+.+...-+- .....++|+||-+ +++...+
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~D--------r~Ir~w~~~-DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~- 153 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGD--------RSIRLWDVR-DFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKR- 153 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCC--------ceEEEEecc-hhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEcc-
Confidence 3445678999999999988733 347777776 4322222222211100 2456789999998 6655544
Q ss_pred CCeeeEEEEeccC-Ce-EEEecccc-cccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 322 NGFWNLHKWIESN-NE-VLAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 322 ~g~~~l~~~d~~~-g~-~~~l~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
...-.+|.++-.+ |. .-..++.+ .++.... +...-++... ++..++.+...+. .|.++++.|..+..+..
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh-~v~~i~iGiA----~~~k~imsas~dt--~i~lw~lkGq~L~~idt 226 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKH-QVDIINIGIA----GNAKYIMSASLDT--KICLWDLKGQLLQSIDT 226 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhc-ccceEEEeec----CCceEEEEecCCC--cEEEEecCCceeeeecc
Confidence 4444555544322 11 11111111 0110000 0111123333 4444444444443 35555777666666655
Q ss_pred CCCceEEe-eEeCCEEEEEEe
Q 004735 399 PFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 399 ~~~~v~~~-~~~~~~~~~~~~ 418 (732)
........ .+++++++..++
T Consensus 227 nq~~n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGRFIAVSG 247 (420)
T ss_pred ccccccceeeCCCCcEEEEec
Confidence 43332222 556666655443
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.06 Score=52.13 Aligned_cols=178 Identities=16% Similarity=0.099 Sum_probs=93.0
Q ss_pred CEEEEEcCCCCCccCC--cccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 496 PLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~--~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..||.+-||......+ .|+.+.+.|+++||.|++.-|.-+-.+..--.+ .......+++.|.+....+.
T Consensus 17 ~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~A~~---------~~~~f~~~~~~L~~~~~~~~ 87 (250)
T PF07082_consen 17 KGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAIARE---------VWERFERCLRALQKRGGLDP 87 (250)
T ss_pred CEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHHHHH---------HHHHHHHHHHHHHHhcCCCc
Confidence 3566666764433333 356688889999999999998632221111111 12344556666666544433
Q ss_pred --CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhh----hcCChhhhhhcCccccCCC
Q 004735 574 --KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDN----LVGSEKDYYEKSPINFVDK 646 (732)
Q Consensus 574 --~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~sp~~~~~~ 646 (732)
-.+.=+|||+|+-+-+.+.. ++..-++-++++- .+... ..... +....... +.-.++.-... +.. ..
T Consensus 88 ~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSF-NN~~a-~~aIP-~~~~l~~~l~~EF~PsP~ET~~l--i~~-~Y 161 (250)
T PF07082_consen 88 AYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISF-NNFPA-DEAIP-LLEQLAPALRLEFTPSPEETRRL--IRE-SY 161 (250)
T ss_pred ccCCeeeeecccchHHHHHHhhhccCcccceEEEec-CChHH-HhhCc-hHhhhccccccCccCCHHHHHHH--HHH-hc
Confidence 35778999999999888876 4433344344332 12111 00000 00000000 00011100000 000 01
Q ss_pred CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCC-CEEEEEeCCCCcc
Q 004735 647 FSCPIILFQGLEDKVVPPDQARKIYKALKENGL-PVALVEYEGEQHG 692 (732)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~-~~~~~~~~~~gH~ 692 (732)
.....|+|.-.+|.+ +++..+.+.|+.... .++....+| .|-
T Consensus 162 ~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 162 QVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred CCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 123478888888876 688888888887643 346667764 684
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.35 Score=51.33 Aligned_cols=190 Identities=17% Similarity=0.105 Sum_probs=107.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEE-EEcCCCCCCC---ChhhHHhh
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFV-DVNYGGSTGY---GREFRERL 546 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~-~~d~rG~~g~---g~~~~~~~ 546 (732)
.+.++..+ +.|- +-++|+.|++-|.-. ...|.. .-.+...|.-.+ .-|.|-.+|. |.+-.
T Consensus 274 ~reEi~yY-FnPG--------D~KPPL~VYFSGyR~---aEGFEg-y~MMk~Lg~PfLL~~DpRleGGaFYlGs~ey--- 337 (511)
T TIGR03712 274 KRQEFIYY-FNPG--------DFKPPLNVYFSGYRP---AEGFEG-YFMMKRLGAPFLLIGDPRLEGGAFYLGSDEY--- 337 (511)
T ss_pred CCCeeEEe-cCCc--------CCCCCeEEeeccCcc---cCcchh-HHHHHhcCCCeEEeeccccccceeeeCcHHH---
Confidence 45566533 4453 456899999999633 233322 122445577654 4478855541 22211
Q ss_pred ccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHHHHhhcch-----
Q 004735 547 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHK----- 619 (732)
Q Consensus 547 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~~~~~~----- 619 (732)
-+.+...|+..++....+.+.++|.|.|||.+-|+.+++ .| .|+|+.=|..++..+.....-
T Consensus 338 --------E~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~P---~AIiVgKPL~NLGtiA~n~rL~RP~~ 406 (511)
T TIGR03712 338 --------EQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLSP---HAIIVGKPLVNLGTIASRMRLDRPDE 406 (511)
T ss_pred --------HHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCCC---ceEEEcCcccchhhhhccccccCCCC
Confidence 123555566555555788999999999999999999998 55 688888898888776543211
Q ss_pred hhh--hhhhhhcC----------ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 620 FES--RYIDNLVG----------SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 620 ~~~--~~~~~~~~----------~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
|.. ..+....+ +...|... ....--++.+.+..=.+|.. ....-.++.+.|.+.++.+--.-++
T Consensus 407 F~TslDvl~~~~g~~s~~~i~~ln~~fW~~f---~~~d~S~T~F~i~YM~~DDY-D~~A~~~L~~~l~~~~~~v~~kG~~ 482 (511)
T TIGR03712 407 FGTALDILLLNTGGTSSEDVVKLDNRFWKKF---KKSDLSKTTFAIAYMKNDDY-DPTAFQDLLPYLSKQGAQVMSKGIP 482 (511)
T ss_pred CchHHHhHHhhcCCCCHHHHHHHHHHHHHHH---hhcCcccceEEEEeeccccC-CHHHHHHHHHHHHhcCCEEEecCCC
Confidence 000 00000001 11222222 22222345555555555543 4556677888888777655444454
Q ss_pred CCCcc
Q 004735 688 GEQHG 692 (732)
Q Consensus 688 ~~gH~ 692 (732)
| .|+
T Consensus 483 G-RHN 486 (511)
T TIGR03712 483 G-RHN 486 (511)
T ss_pred C-CCC
Confidence 3 464
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.06 E-value=2.6 Score=50.41 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=41.9
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE----EcCCCCccccEEcccCCCceeccccCCCCCeEEEEe
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI----ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~----d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~ 262 (732)
...-.+.+-+|...++++.. .++|..+ +.++.. ...+..-.......+||||+..|+++.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~---------~Gdi~~~~~~~~~~~~~---~E~VG~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALA---------SGDIILVREDPDPDEDE---IEIVGSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CcEEEEEeccCCCcEEEEEC---------CceEEEEEccCCCCCce---eEEEEEEcCcEEEEEECCCcCEEEEEe
Confidence 34455667888887777665 2578888 555555 555544444566789999999999887
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.23 Score=52.90 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=71.3
Q ss_pred eceeecCCCCEEEEEEeccCCCCC---CceeEEEEEEcCC--CCccccEEcccCCCceeccccCCCCCeEEEEeccCCCC
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDAL---NSTTEIVAIALNG--QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~---~~~~~l~~~d~~~--~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
...+|+++|+.++..+.+.+.... ....+|++++-.. |.....+.+.++.....++.+.+|| |+ +. .
T Consensus 17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--ly-V~-~---- 88 (367)
T TIGR02604 17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VY-VA-T---- 88 (367)
T ss_pred ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EE-Ee-C----
Confidence 445688888843222211110000 0013777776432 3311134455555555678889998 54 43 1
Q ss_pred CCCccEEEEE-EecCCCcee-e-eEEecCCCCC---ccccCcCceeCCCCcEEEEEeccC----------------Ceee
Q 004735 269 PWDKAELWVG-YISENGDVY-K-RVCVAGFDPT---IVESPTEPKWSSKGELFFVTDRKN----------------GFWN 326 (732)
Q Consensus 269 ~~~~~~l~v~-d~~~~g~~~-~-~~~~~~~~~~---~~~~~~~~~wspDg~l~~~~~~~~----------------g~~~ 326 (732)
..+|+.+ |.+.+|+.. + ..++.+.... .......+.|.|||+||+...... -...
T Consensus 89 ---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 89 ---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred ---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 2347766 544333221 1 2232322100 013466899999999887544200 0136
Q ss_pred EEEEeccCCeEEEeccc
Q 004735 327 LHKWIESNNEVLAIYSL 343 (732)
Q Consensus 327 l~~~d~~~g~~~~l~~~ 343 (732)
++++++++++.+.+..+
T Consensus 166 i~r~~pdg~~~e~~a~G 182 (367)
T TIGR02604 166 LFRYNPDGGKLRVVAHG 182 (367)
T ss_pred EEEEecCCCeEEEEecC
Confidence 89999999887766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.04 E-value=2.1 Score=47.51 Aligned_cols=188 Identities=8% Similarity=-0.050 Sum_probs=92.3
Q ss_pred EEEEEeCC-CCeEEEEeCCCCCCCceecCCCCC---CCCeE----------ee----ceeecCCCCEEEEEEeccCCCCC
Q 004735 156 TVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYG---EPLVS----------YA----DGIFDPRFNRYVTVREDRRQDAL 217 (732)
Q Consensus 156 ~i~f~~~~-~~~l~~~d~~~~~~~~~~lt~~~~---~~~~~----------~~----~~~~spdG~~l~~~~~~~~~~~~ 217 (732)
+-+|.++. ..++-+++++. -+..+++.-+. .++.+ +. ..-++|||+.+.-. +
T Consensus 142 r~~findk~n~Rvari~l~~--~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~-~------- 211 (635)
T PRK02888 142 RYLFINDKANTRVARIRLDV--MKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDP-K------- 211 (635)
T ss_pred eEEEEecCCCcceEEEECcc--EeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecc-c-------
Confidence 55666654 55899999875 44444332211 11111 10 11256777754211 1
Q ss_pred CceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 218 ~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
.+.+-+-++|.++.+. ..++.-+. ......+||||++++..+.+... ...+..++.. +.. ....+.-.
T Consensus 212 ey~~~vSvID~etmeV--~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~----G~tl~em~a~-e~d--~~vvfni~-- 279 (635)
T PRK02888 212 KYRSLFTAVDAETMEV--AWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEE----GVTLAEMMAA-ERD--WVVVFNIA-- 279 (635)
T ss_pred ceeEEEEEEECccceE--EEEEEeCC-CcccceECCCCCEEEEeccCccc----Ccceeeeccc-cCc--eEEEEchH--
Confidence 2346777889887652 23332222 22345789999988766533221 3346666554 211 12222111
Q ss_pred CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC----C-eEEEecccccccCCCceeecccceeeeeecCCCCEEE
Q 004735 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN----N-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 372 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~----g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~ 372 (732)
. --.+.+||+..++. ...+-.+|..+ + +.....+.... ...+.+.| |++++|
T Consensus 280 ---~---iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKs---------PHGV~vSP---DGkyly 336 (635)
T PRK02888 280 ---R---IEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKN---------PHGVNTSP---DGKYFI 336 (635)
T ss_pred ---H---HHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCC---------ccceEECC---CCCEEE
Confidence 0 12567899833331 13477888776 2 33322222111 11233443 888888
Q ss_pred EEEEECCEEEEEEEECCC
Q 004735 373 CSYRQNGRSYLGILDDFG 390 (732)
Q Consensus 373 ~~s~~~g~~~ly~~~~~~ 390 (732)
.+...++. +-++|.+.
T Consensus 337 VanklS~t--VSVIDv~k 352 (635)
T PRK02888 337 ANGKLSPT--VTVIDVRK 352 (635)
T ss_pred EeCCCCCc--EEEEEChh
Confidence 77655544 44446554
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.098 Score=53.29 Aligned_cols=206 Identities=10% Similarity=0.011 Sum_probs=118.6
Q ss_pred CCHHHHhcc-CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccc--cCCceeEEECC
Q 004735 79 LTADVVSGA-SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQE--YGGGAFRIFGD 155 (732)
Q Consensus 79 ~~~~~i~~~-~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~--~g~~~~~~~~~ 155 (732)
+..|.|.+. ..-++.+.|++ +..|-+... .+|-+.+|..... ..+.... .+. -...+|++ .|
T Consensus 128 fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD--~gG~iKyWqpnmn----nVk~~~a-------hh~eaIRdlafSp-nD 192 (464)
T KOG0284|consen 128 FNFETILQAHDSPVRTMKWSH-NGTWMISGD--KGGMIKYWQPNMN----NVKIIQA-------HHAEAIRDLAFSP-ND 192 (464)
T ss_pred eeHHHHhhhhcccceeEEEcc-CCCEEEEcC--CCceEEecccchh----hhHHhhH-------hhhhhhheeccCC-CC
Confidence 567777666 33458999994 444444432 2455555544321 1111110 011 11234444 44
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
..+.+...++.|-++|..-. .+.++|... +.......|+|.-.. +++...+ +-+-++|..+|.-
T Consensus 193 skF~t~SdDg~ikiWdf~~~-kee~vL~GH----gwdVksvdWHP~kgL-iasgskD--------nlVKlWDprSg~c-- 256 (464)
T KOG0284|consen 193 SKFLTCSDDGTIKIWDFRMP-KEERVLRGH----GWDVKSVDWHPTKGL-IASGSKD--------NLVKLWDPRSGSC-- 256 (464)
T ss_pred ceeEEecCCCeEEEEeccCC-chhheeccC----CCCcceeccCCccce-eEEccCC--------ceeEeecCCCcch--
Confidence 45556667788888887652 455667554 555566779997665 5554422 3556679888761
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-E
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 314 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l 314 (732)
+-.|......+....|+|+|.+|+-.+.|. .+.++|+. . .+++..+.+.. ..+....|.|=-. |
T Consensus 257 l~tlh~HKntVl~~~f~~n~N~Llt~skD~--------~~kv~DiR-~--mkEl~~~r~Hk----kdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 257 LATLHGHKNTVLAVKFNPNGNWLLTGSKDQ--------SCKVFDIR-T--MKELFTYRGHK----KDVTSLTWHPLNESL 321 (464)
T ss_pred hhhhhhccceEEEEEEcCCCCeeEEccCCc--------eEEEEehh-H--hHHHHHhhcch----hhheeeccccccccc
Confidence 222333444567889999999998776333 37888876 2 23345555544 4567889999766 6
Q ss_pred EEEEeccCCeeeEEEEe
Q 004735 315 FFVTDRKNGFWNLHKWI 331 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d 331 (732)
+.+... .|....|.++
T Consensus 322 ftsgg~-Dgsvvh~~v~ 337 (464)
T KOG0284|consen 322 FTSGGS-DGSVVHWVVG 337 (464)
T ss_pred eeeccC-CCceEEEecc
Confidence 655444 4554444444
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.015 Score=49.13 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=44.7
Q ss_pred CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 648 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
..|+|++.++.|+++|.+.++.+.+.+.. .+++..++.||+... ....-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 58999999999999999999999998874 489999999998652 111233344445554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.13 Score=55.83 Aligned_cols=123 Identities=11% Similarity=0.026 Sum_probs=69.8
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
++.....+.||+|+.|+-.+.....+ ...|++++..+-.. ...|....-.+....|||||++|+-++.|+.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~e----hAvI~lw~t~~W~~--~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt--- 595 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKE----HAVIRLWNTANWLQ--VQELEGHSLTVTRLAFSPDGRYLLSVSRDRT--- 595 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCcc----ceEEEEEeccchhh--hheecccceEEEEEEECCCCcEEEEeecCce---
Confidence 34456778999999765554433222 36888888776331 3345544445678999999999998885542
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEE
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~ 330 (732)
..||-.--+..++.. ...+.... .-+....|+||++-++++.+ ...--+|..
T Consensus 596 ---~sl~~~~~~~~~e~~-fa~~k~Ht----RIIWdcsW~pde~~FaTaSR-DK~VkVW~~ 647 (764)
T KOG1063|consen 596 ---VSLYEVQEDIKDEFR-FACLKAHT----RIIWDCSWSPDEKYFATASR-DKKVKVWEE 647 (764)
T ss_pred ---EEeeeeecccchhhh-hccccccc----eEEEEcccCcccceeEEecC-CceEEEEec
Confidence 224433111011111 11122222 44567789999875445555 344455554
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.9 Score=42.54 Aligned_cols=131 Identities=10% Similarity=-0.015 Sum_probs=79.7
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
++..+++...|..++.+|..+| ...++.... ....+...-+.-|-.++....++ .++-++|...++
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG-~~~rk~k~h----~~~vNs~~p~rrg~~lv~SgsdD--------~t~kl~D~R~k~- 166 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETG-KRIRKHKGH----TSFVNSLDPSRRGPQLVCSGSDD--------GTLKLWDIRKKE- 166 (338)
T ss_pred CCCEEEEecCCceEEEEecccc-eeeehhccc----cceeeecCccccCCeEEEecCCC--------ceEEEEeecccc-
Confidence 3467778878889999999983 334444433 22223333344577777776654 577788888765
Q ss_pred cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
..++...........|.-++..+.-... +++|-++|+. .++. ...+.+.. ..+..+.-|++|.
T Consensus 167 --~~~t~~~kyqltAv~f~d~s~qv~sggI--------dn~ikvWd~r-~~d~--~~~lsGh~----DtIt~lsls~~gs 229 (338)
T KOG0265|consen 167 --AIKTFENKYQLTAVGFKDTSDQVISGGI--------DNDIKVWDLR-KNDG--LYTLSGHA----DTITGLSLSRYGS 229 (338)
T ss_pred --hhhccccceeEEEEEecccccceeeccc--------cCceeeeccc-cCcc--eEEeeccc----CceeeEEeccCCC
Confidence 4444433334445677777776643221 2347777875 3333 44556654 5677888899998
Q ss_pred -EE
Q 004735 314 -LF 315 (732)
Q Consensus 314 -l~ 315 (732)
+.
T Consensus 230 ~ll 232 (338)
T KOG0265|consen 230 FLL 232 (338)
T ss_pred ccc
Confidence 44
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.92 E-value=3.7 Score=45.60 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=69.1
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCcc-ccCcCceeC----CCCc---EEEEEeccCCeeeEEEEeccCCeEEEecccc
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIV-ESPTEPKWS----SKGE---LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD 344 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ws----pDg~---l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~ 344 (732)
..|+.+|++ +|+..+.......+ .|. .....|... -||+ +++.... +| +|+.+|+++|+..--....
T Consensus 256 ~~l~Ald~~-tG~~~W~~~~~~~~-~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~-~G--~l~ald~~tG~~~W~~~~~ 330 (488)
T cd00216 256 DSIVALDAD-TGKVKWFYQTTPHD-LWDYDGPNQPSLADIKPKDGKPVPAIVHAPK-NG--FFYVLDRTTGKLISARPEV 330 (488)
T ss_pred eeEEEEcCC-CCCEEEEeeCCCCC-CcccccCCCCeEEeccccCCCeeEEEEEECC-Cc--eEEEEECCCCcEeeEeEee
Confidence 479999998 89886655433221 110 111122222 2343 4555443 33 4899999998754221110
Q ss_pred cccCCCceeecccceeeeeecCCCCEEEEEEEE---------------CCEEEEEEEECCCCceEEeccCC---------
Q 004735 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ---------------NGRSYLGILDDFGHSLSLLDIPF--------- 400 (732)
Q Consensus 345 ~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~---------------~g~~~ly~~~~~~~~~~~lt~~~--------- 400 (732)
...... +.+.+|+.... .....|+.+|+.+|+..--....
T Consensus 331 --~~~~~~--------------~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g 394 (488)
T cd00216 331 --EQPMAY--------------DPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIG 394 (488)
T ss_pred --cccccc--------------CCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccC
Confidence 001111 22445543211 12356888888888754222111
Q ss_pred C-ce-EEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 401 T-DI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 401 ~-~v-~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
. .. ..+... +.++|+.+. ...||.+|.++|+.
T Consensus 395 ~~~~~~~~~~~-g~~v~~g~~---dG~l~ald~~tG~~ 428 (488)
T cd00216 395 FPHWGGSLATA-GNLVFAGAA---DGYFRAFDATTGKE 428 (488)
T ss_pred CcccCcceEec-CCeEEEECC---CCeEEEEECCCCce
Confidence 0 01 122233 345566543 24799999999973
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.55 Score=49.53 Aligned_cols=122 Identities=12% Similarity=0.041 Sum_probs=76.5
Q ss_pred eceeecCCCCEEEEEEeccCCCC--CCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDA--LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
-.+.|.+.|++|.+....+.... ....++||++++.... .+....-.+.+....|+|++++.+.++.-.+
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p----- 297 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPLSSRFAVISGYMP----- 297 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecccCCceeEEecccc-----
Confidence 34569999999988766554222 2234899999998655 3333232445667899999999998873332
Q ss_pred ccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
..+-++|+. |.+ +-.++.. --..+.|||.++ +++..-. .-+.++-.+++.+.
T Consensus 298 -a~~s~~~lr--~Nl--~~~~Pe~------~rNT~~fsp~~r~il~agF~-nl~gni~i~~~~~r 350 (561)
T COG5354 298 -ASVSVFDLR--GNL--RFYFPEQ------KRNTIFFSPHERYILFAGFD-NLQGNIEIFDPAGR 350 (561)
T ss_pred -cceeecccc--cce--EEecCCc------ccccccccCcccEEEEecCC-ccccceEEeccCCc
Confidence 236777776 333 2223332 224788999999 5543322 44556777787654
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.052 Score=55.16 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCE--EEEEcCC--CC-CCCChhhHHhhccCCCcccHHHHHHHHHHHHhc
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA--FVDVNYG--GS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 568 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~--v~~~d~r--G~-~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 568 (732)
..-++||+||.. ..........+|...+.|+. .+.+-.+ |+ .+|... . +-......++...+.+|.++
T Consensus 115 ~k~vlvFvHGfN-ntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~D--r----eS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 115 AKTVLVFVHGFN-NTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYD--R----ESTNYSRPALERLLRYLATD 187 (377)
T ss_pred CCeEEEEEcccC-CchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccc--h----hhhhhhHHHHHHHHHHHHhC
Confidence 457999999972 22222333456666666653 3444433 22 112111 0 01113367888999999988
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh----C-----CCcceEEEeecCcCCHHHH
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA----F-----RDTFKAGASLYGVADLSML 613 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~----~-----p~~~~a~v~~~~~~d~~~~ 613 (732)
.. ..+|.|++||||.++++.++. . +.+|+-+|+.+|=.|..-+
T Consensus 188 ~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~DVF 239 (377)
T COG4782 188 KP--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVDVF 239 (377)
T ss_pred CC--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChhhH
Confidence 64 469999999999999987764 2 3357888888887765443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.17 Score=52.89 Aligned_cols=148 Identities=12% Similarity=0.019 Sum_probs=89.2
Q ss_pred CceeEE--ECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 147 GGAFRI--FGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 147 ~~~~~~--~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
-.+|++ +.| ++.|+.-.+|+|.++|+... ..+|++.... .-.....+|+||.+| ++..-+ +.+
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGht----DGascIdis~dGtkl-WTGGlD--------ntv 575 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHT----DGASCIDISKDGTKL-WTGGLD--------NTV 575 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCC----CCceeEEecCCCcee-ecCCCc--------cce
Confidence 344544 334 89999889999999999863 4466666542 222445689999985 332211 456
Q ss_pred EEEEcCCCCccccEEcc--cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 224 VAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt--~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
--+|+..+. ++. .-...+.....+|.|.||+.-- .++.+++.... |.- ...+.-.+ .
T Consensus 576 RcWDlregr-----qlqqhdF~SQIfSLg~cP~~dWlavGM--------ens~vevlh~s--kp~--kyqlhlhe----S 634 (705)
T KOG0639|consen 576 RCWDLREGR-----QLQQHDFSSQIFSLGYCPTGDWLAVGM--------ENSNVEVLHTS--KPE--KYQLHLHE----S 634 (705)
T ss_pred eehhhhhhh-----hhhhhhhhhhheecccCCCccceeeec--------ccCcEEEEecC--Ccc--ceeecccc----c
Confidence 667887664 332 2223445667899999998532 34457777665 211 22222222 4
Q ss_pred cCcCceeCCCCcEEEEEeccCCeeeEEEE
Q 004735 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g~~~l~~~ 330 (732)
-+-.+.|++-|+.++.+.. .+.-+.|+.
T Consensus 635 cVLSlKFa~cGkwfvStGk-DnlLnawrt 662 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFVSTGK-DNLLNAWRT 662 (705)
T ss_pred EEEEEEecccCceeeecCc-hhhhhhccC
Confidence 4567788999985555444 555566665
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.091 Score=66.39 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=60.8
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.++++||.++. ...|..+.+.| ..++.|+.++.+|.+.. .. ....++++.+.+...+.... ...+
T Consensus 1069 ~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~~~~-~~---------~~~~l~~la~~~~~~i~~~~-~~~p 1134 (1296)
T PRK10252 1069 PTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRPDGP-MQ---------TATSLDEVCEAHLATLLEQQ-PHGP 1134 (1296)
T ss_pred CCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCCCCC-CC---------CCCCHHHHHHHHHHHHHhhC-CCCC
Confidence 568899997443 34555566655 44699999999865321 00 01224444433333222211 1257
Q ss_pred EEEEEcChHHHHHHHHHh----CCCcceEEEeecC
Q 004735 576 LCITGGSAGGYTTLAALA----FRDTFKAGASLYG 606 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~ 606 (732)
+.++|||+||.++..++. +++++...++..+
T Consensus 1135 ~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1135 YHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred EEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 999999999999998876 5778888877654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.54 Score=48.73 Aligned_cols=202 Identities=12% Similarity=0.136 Sum_probs=110.0
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCC--CCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~--~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
-+.+...++.+-++|+.......+.+.+. .........|.+|+|-...++....+. +.|.++|+.+++ .
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd--------~~L~iwD~R~~~-~ 262 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD--------GKLMIWDTRSNT-S 262 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC--------CeEEEEEcCCCC-C
Confidence 34455566778888886410111112211 000134567889999887777766544 688999988532 1
Q ss_pred ccEEcccC-CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 235 EPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 235 ~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
+++..... ..-....+|+|=+..|.-+... ..+|.++|+. +=+ ..+..+.+.. ..+..+.|||.-.
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~-------D~tV~LwDlR-nL~-~~lh~~e~H~----dev~~V~WSPh~e 329 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSA-------DKTVALWDLR-NLN-KPLHTFEGHE----DEVFQVEWSPHNE 329 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccC-------CCcEEEeech-hcc-cCceeccCCC----cceEEEEeCCCCC
Confidence 13333222 3345567899966666544321 3458888987 211 2345556655 6788999999987
Q ss_pred -EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCc--eee-----cccceeeeeecCCCCEEEEEEEECCEEEEEE
Q 004735 314 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL--WVF-----GINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (732)
Q Consensus 314 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~--w~~-----~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~ 385 (732)
++.++.. .+.-++|-++--+.+ +. .++.+.+.|. +.- ...++.|-| ..-..+.+...++.-+||.
T Consensus 330 tvLASSg~-D~rl~vWDls~ig~e-q~--~eda~dgppEllF~HgGH~~kV~DfsWnp---~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 330 TVLASSGT-DRRLNVWDLSRIGEE-QS--PEDAEDGPPELLFIHGGHTAKVSDFSWNP---NEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ceeEeccc-CCcEEEEeccccccc-cC--hhhhccCCcceeEEecCcccccccccCCC---CCCeEEEEecCCceEEEee
Confidence 7666654 555555544322222 11 1111111111 111 122333332 5556777777888888887
Q ss_pred EE
Q 004735 386 LD 387 (732)
Q Consensus 386 ~~ 387 (732)
+.
T Consensus 403 ~s 404 (422)
T KOG0264|consen 403 MA 404 (422)
T ss_pred cc
Confidence 64
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.018 Score=57.46 Aligned_cols=144 Identities=10% Similarity=0.117 Sum_probs=90.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
.|+-+...++.|+++|+.. +.| +.+.- .++-+..+|+|.+ ..|+..+. ..+||..|...-..
T Consensus 201 sILas~~sDrsIvLyD~R~--~~Pl~KVi~-----~mRTN~IswnPea--fnF~~a~E-------D~nlY~~DmR~l~~- 263 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQ--ASPLKKVIL-----TMRTNTICWNPEA--FNFVAANE-------DHNLYTYDMRNLSR- 263 (433)
T ss_pred hheeeeccCCceEEEeccc--CCccceeee-----eccccceecCccc--cceeeccc-------cccceehhhhhhcc-
Confidence 4555655677899999986 333 33333 3566889999933 35554432 27899998765320
Q ss_pred ccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 235 EPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 235 ~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
+..+..+. .-+....|||-|+-++-.+.|. .|.++.+. .|..+.+.-...- +.+..+.||-|.+
T Consensus 264 -p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk--------sIRIf~~~-~~~SRdiYhtkRM-----q~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 264 -PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK--------SIRIFPVN-HGHSRDIYHTKRM-----QHVFCVKYSMDSK 328 (433)
T ss_pred -cchhhcccceeEEEeccCCCcchhccccccc--------eEEEeecC-CCcchhhhhHhhh-----heeeEEEEecccc
Confidence 22222222 2344678999999877655333 37788877 5654333222222 5677899999998
Q ss_pred EEEEEeccCCeeeEEEEec
Q 004735 314 LFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~ 332 (732)
.++...+ .+.-+||+...
T Consensus 329 yi~SGSd-d~nvRlWka~A 346 (433)
T KOG0268|consen 329 YIISGSD-DGNVRLWKAKA 346 (433)
T ss_pred EEEecCC-Ccceeeeecch
Confidence 6655555 68888987654
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.051 Score=50.40 Aligned_cols=107 Identities=23% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCCCCCccC-Ccc-------------cHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC-CCc-ccH
Q 004735 492 EEKPPLLVKSHGGPTSEAR-GIL-------------NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR-WGI-VDV 555 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~-~~~-------------~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~-~~~-~~~ 555 (732)
..+..++|++||.+-...+ |.. -+.+......||.|++.|..-. +.+.+.-... .+. ..+
T Consensus 98 t~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~----~kfye~k~np~kyirt~v 173 (297)
T KOG3967|consen 98 TNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRE----RKFYEKKRNPQKYIRTPV 173 (297)
T ss_pred cCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchh----hhhhhcccCcchhccchH
Confidence 3455799999996322111 110 0234445678999999986422 2222211110 011 123
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEee
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASL 604 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~ 604 (732)
+-+.-.-..++. ...++.|+++.||+||+.++-++. +|+ .+.++++.
T Consensus 174 eh~~yvw~~~v~--pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialT 223 (297)
T KOG3967|consen 174 EHAKYVWKNIVL--PAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALT 223 (297)
T ss_pred HHHHHHHHHHhc--ccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEee
Confidence 333333333332 345788999999999999999987 554 44444443
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.011 Score=61.86 Aligned_cols=126 Identities=19% Similarity=0.225 Sum_probs=80.6
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HHHHHHHC-CCEEEEEcCCCCCCCChhhH---Hhhcc
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFR---ERLLG 548 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~d~rG~~g~g~~~~---~~~~~ 548 (732)
-+..-+|.|.. + ..+.-++|+++||+.-.....++. -...|+.. ..+|+.+|||-+ .+|--+. ....+
T Consensus 120 CLYlNVW~P~~-~-----p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 120 CLYLNVWAPAA-D-----PYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPG 192 (601)
T ss_pred ceEEEEeccCC-C-----CCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCC
Confidence 46667777742 1 223348999999876555554432 23445554 578899999943 2333222 22344
Q ss_pred CCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHH-HHh--CCCcceEEEeecCcCC
Q 004735 549 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLA-ALA--FRDTFKAGASLYGVAD 609 (732)
Q Consensus 549 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~-~~~--~p~~~~a~v~~~~~~d 609 (732)
++| .-|..-|++|+.++ -.-|+++|.|+|.|+|+..+.+ +++ ...+|+-+|+.+|..+
T Consensus 193 NmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 193 NMG---LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred ccc---hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 444 67888899999876 3458999999999999876543 333 3347888888777543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.21 Score=52.69 Aligned_cols=120 Identities=14% Similarity=0.218 Sum_probs=70.3
Q ss_pred eCCCCeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc
Q 004735 161 NYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (732)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 239 (732)
...+|.+.+++-. +..++ +... .......+|+|||.-++-+.++ ..|-++...|-- ...+
T Consensus 81 ~s~DGkf~il~k~---~rVE~sv~AH----~~A~~~gRW~~dGtgLlt~GED---------G~iKiWSrsGML---RStl 141 (737)
T KOG1524|consen 81 CSNDGRFVILNKS---ARVERSISAH----AAAISSGRWSPDGAGLLTAGED---------GVIKIWSRSGML---RSTV 141 (737)
T ss_pred EcCCceEEEeccc---chhhhhhhhh----hhhhhhcccCCCCceeeeecCC---------ceEEEEeccchH---HHHH
Confidence 3356777777654 33333 3322 1223456799999987766553 466666665432 2344
Q ss_pred ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 240 t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
......+...+|.||...++|.. +.++++-.+..+-++-+. ...+ +-+-...|++...|+
T Consensus 142 ~Q~~~~v~c~~W~p~S~~vl~c~---------g~h~~IKpL~~n~k~i~W---kAHD----GiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNSIVFCQ---------GGHISIKPLAANSKIIRW---RAHD----GLVLSLSWSTQSNII 201 (737)
T ss_pred hhcCceeEEEEECCCCCceEEec---------CCeEEEeecccccceeEE---eccC----cEEEEeecCccccce
Confidence 55555667789999999999987 344777777643333222 1222 444555666655433
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.42 Score=53.29 Aligned_cols=200 Identities=8% Similarity=-0.030 Sum_probs=100.8
Q ss_pred CCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 146 g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.+..++|+.+..+.+...|..+-+|++.. ...-.+-.. ...+..++|.|-..+ +|++..-. ..+-+
T Consensus 371 DILDlSWSKn~fLLSSSMDKTVRLWh~~~--~~CL~~F~H----ndfVTcVaFnPvDDr-yFiSGSLD-------~KvRi 436 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDKTVRLWHPGR--KECLKVFSH----NDFVTCVAFNPVDDR-YFISGSLD-------GKVRL 436 (712)
T ss_pred hheecccccCCeeEeccccccEEeecCCC--cceeeEEec----CCeeEEEEecccCCC-cEeecccc-------cceEE
Confidence 35567888888888877777666666654 222222222 244566789995444 45544221 23444
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceee---eEEecCCCCCcccc
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK---RVCVAGFDPTIVES 302 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~---~~~~~~~~~~~~~~ 302 (732)
+++...+ +.--++-.+.+...+++|||+..+.-.. .+..++++.. +-++.. +..-...... -..
T Consensus 437 WsI~d~~---Vv~W~Dl~~lITAvcy~PdGk~avIGt~--------~G~C~fY~t~-~lk~~~~~~I~~~~~Kk~~-~~r 503 (712)
T KOG0283|consen 437 WSISDKK---VVDWNDLRDLITAVCYSPDGKGAVIGTF--------NGYCRFYDTE-GLKLVSDFHIRLHNKKKKQ-GKR 503 (712)
T ss_pred eecCcCe---eEeehhhhhhheeEEeccCCceEEEEEe--------ccEEEEEEcc-CCeEEEeeeEeeccCcccc-Cce
Confidence 4555444 4444455567778999999997654432 2224455544 222211 1111111000 022
Q ss_pred CcCceeCCCC--cEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 303 PTEPKWSSKG--ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 303 ~~~~~wspDg--~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
+..+++.|-. ++++++++ .+|-++|....++....++...... ...-.|.. ||++|+..+ ++.+
T Consensus 504 ITG~Q~~p~~~~~vLVTSnD----SrIRI~d~~~~~lv~KfKG~~n~~S------Q~~Asfs~---Dgk~IVs~s-eDs~ 569 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSND----SRIRIYDGRDKDLVHKFKGFRNTSS------QISASFSS---DGKHIVSAS-EDSW 569 (712)
T ss_pred eeeeEecCCCCCeEEEecCC----CceEEEeccchhhhhhhcccccCCc------ceeeeEcc---CCCEEEEee-cCce
Confidence 4555665432 37777766 3466666543333222232222111 11123333 888888888 4555
Q ss_pred EEEEEE
Q 004735 381 SYLGIL 386 (732)
Q Consensus 381 ~~ly~~ 386 (732)
..||.+
T Consensus 570 VYiW~~ 575 (712)
T KOG0283|consen 570 VYIWKN 575 (712)
T ss_pred EEEEeC
Confidence 555554
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.024 Score=62.70 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCCC--CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC----CC---CCcEEEEEcChHHHHHHHHHhC
Q 004735 524 GWAFVDVNYGGST--GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK----AD---EKRLCITGGSAGGYTTLAALAF 594 (732)
Q Consensus 524 G~~v~~~d~rG~~--g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~----~d---~~ri~i~G~S~GG~~a~~~~~~ 594 (732)
.|..+++|+-+.- =+|+... ...+-+.+||+++.+.+. .+ +..|+|+||||||.+|..++.+
T Consensus 132 ~~DFFaVDFnEe~tAm~G~~l~---------dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl 202 (973)
T KOG3724|consen 132 SFDFFAVDFNEEFTAMHGHILL---------DQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL 202 (973)
T ss_pred ccceEEEcccchhhhhccHhHH---------HHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh
Confidence 4677888875321 1222211 224556778888876432 22 5679999999999999998887
Q ss_pred CCcceEEE
Q 004735 595 RDTFKAGA 602 (732)
Q Consensus 595 p~~~~a~v 602 (732)
++..++.|
T Consensus 203 kn~~~~sV 210 (973)
T KOG3724|consen 203 KNEVQGSV 210 (973)
T ss_pred hhhccchh
Confidence 75555543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.63 E-value=5 Score=44.93 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=37.0
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccC-cCce-e--CCCCc---EEEEEeccCCeeeEEEEeccCCeE
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESP-TEPK-W--SSKGE---LFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~-~~~~-w--spDg~---l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
..|..+|++ +|++++.......+ .|+... ..+. . ..||+ ++....+ +| .+|.+|..+|+.
T Consensus 271 ~s~vAld~~-TG~~~W~~Q~~~~D-~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K-~G--~~~vlDr~tG~~ 337 (527)
T TIGR03075 271 SSIVARDPD-TGKIKWHYQTTPHD-EWDYDGVNEMILFDLKKDGKPRKLLAHADR-NG--FFYVLDRTNGKL 337 (527)
T ss_pred eeEEEEccc-cCCEEEeeeCCCCC-CccccCCCCcEEEEeccCCcEEEEEEEeCC-Cc--eEEEEECCCCce
Confidence 368889999 99998776665554 332322 1222 2 24665 4545544 44 588899988875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.4 Score=42.24 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=77.2
Q ss_pred CCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCC--EEEEEEeccCCCCCCceeEE
Q 004735 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 146 g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~--~l~~~~~~~~~~~~~~~~~l 223 (732)
.+.+.++++-.+ .+...|..|.++|+... .+...|... ....+...|.++-. .|+...++ ..|
T Consensus 45 sitavAVs~~~~-aSGssDetI~IYDm~k~-~qlg~ll~H----agsitaL~F~~~~S~shLlS~sdD---------G~i 109 (362)
T KOG0294|consen 45 SITALAVSGPYV-ASGSSDETIHIYDMRKR-KQLGILLSH----AGSITALKFYPPLSKSHLLSGSDD---------GHI 109 (362)
T ss_pred ceeEEEecceeE-eccCCCCcEEEEeccch-hhhcceecc----ccceEEEEecCCcchhheeeecCC---------CcE
Confidence 344555544332 23344568999999752 222222222 23344555666553 44433332 466
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccC
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~ 303 (732)
.+++...=+ ....+-.....+......|.|| ||..-..+ ..|..+++- .|+...+..+... .
T Consensus 110 ~iw~~~~W~--~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D-------~~lr~WNLV-~Gr~a~v~~L~~~-------a 171 (362)
T KOG0294|consen 110 IIWRVGSWE--LLKSLKAHKGQVTDLSIHPSGK-LALSVGGD-------QVLRTWNLV-RGRVAFVLNLKNK-------A 171 (362)
T ss_pred EEEEcCCeE--EeeeecccccccceeEecCCCc-eEEEEcCC-------ceeeeehhh-cCccceeeccCCc-------c
Confidence 666664321 0222323334467788899987 66544222 236777776 5654333333332 3
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEe
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d 331 (732)
..+.|+|.|.-+++..+ ..-.||..+
T Consensus 172 t~v~w~~~Gd~F~v~~~--~~i~i~q~d 197 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGR--NKIDIYQLD 197 (362)
T ss_pred eeeEEcCCCCEEEEEec--cEEEEEecc
Confidence 45899999983333332 334455444
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.6 Score=46.18 Aligned_cols=202 Identities=11% Similarity=-0.013 Sum_probs=103.4
Q ss_pred ceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc---CCCceeccccCCC--CCeEEEEeccCCCCC
Q 004735 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS---GSDFYAFPRMDPR--GERMAWIEWHHPNMP 269 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~---~~~~~~~p~~SPD--G~~la~~~~~~~~~~ 269 (732)
-..||-|.++++.+.. +.|++.++ ++. ..+... .........|||- +.-|||..-...+.
T Consensus 136 ~~k~s~~D~y~ARvv~----------~sl~i~e~-t~n---~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~k- 200 (561)
T COG5354 136 VLKFSIDDKYVARVVG----------SSLYIHEI-TDN---IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNK- 200 (561)
T ss_pred eeeeeecchhhhhhcc----------CeEEEEec-CCc---cccCchhhccccceeeEEecCCCCCceEEEEccccCCC-
Confidence 3568889888777744 68888887 444 222211 1223445678884 55577776343332
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc--C-----CeeeEEEEeccCCeEEEec
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK--N-----GFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~--~-----g~~~l~~~d~~~g~~~~l~ 341 (732)
...+.++.+..+..+....++... -.++.|.+.|+ |++...+. . |..+||+++......+...
T Consensus 201 --pa~~~i~sIp~~s~l~tk~lfk~~-------~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~ 271 (561)
T COG5354 201 --PAMVRILSIPKNSVLVTKNLFKVS-------GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK 271 (561)
T ss_pred --CcEEEEEEccCCCeeeeeeeEeec-------ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec
Confidence 234555555422333333333332 25788999999 76655431 1 2367898887644443332
Q ss_pred ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCC
Q 004735 342 SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGV 421 (732)
Q Consensus 342 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~ 421 (732)
.....+....|.+ .++.+.+.+... ...+-..++.+. ++-.-.....-..+.++..+++++++=++
T Consensus 272 ~~~~pVhdf~W~p------------~S~~F~vi~g~~-pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 272 DLKDPVHDFTWEP------------LSSRFAVISGYM-PASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cccccceeeeecc------------cCCceeEEeccc-ccceeecccccc-eEEecCCcccccccccCcccEEEEecCCc
Confidence 2222333445655 555555555211 122334455544 33222221111222334455666655555
Q ss_pred CCcEEEEEEcCCC
Q 004735 422 EPSSVAKVTLDDH 434 (732)
Q Consensus 422 ~~~~ly~~dl~~~ 434 (732)
....+-.+|..+.
T Consensus 338 l~gni~i~~~~~r 350 (561)
T COG5354 338 LQGNIEIFDPAGR 350 (561)
T ss_pred cccceEEeccCCc
Confidence 5555666665543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.34 Score=46.51 Aligned_cols=180 Identities=10% Similarity=0.049 Sum_probs=96.8
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
.|+||++++.++ +..+.+..-+ -.....|.+||+.-.-+++++..+ ..|-++|+.-.. .+++..-+..
T Consensus 37 ~G~L~ile~~~~-~gi~e~~s~d--~~D~LfdV~Wse~~e~~~~~a~GD--------GSLrl~d~~~~s-~Pi~~~kEH~ 104 (311)
T KOG0277|consen 37 NGRLFILEVTDP-KGIQECQSYD--TEDGLFDVAWSENHENQVIAASGD--------GSLRLFDLTMPS-KPIHKFKEHK 104 (311)
T ss_pred CceEEEEecCCC-CCeEEEEeee--cccceeEeeecCCCcceEEEEecC--------ceEEEeccCCCC-cchhHHHhhh
Confidence 467888888631 2222211110 023457889999776666665433 355556643221 0022222333
Q ss_pred CceeccccCCCCCeEEEEe-ccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc
Q 004735 244 DFYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 321 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~-~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~ 321 (732)
.-+....|++--+++..++ ||. ..+||..+.. ..+..+.+.. .-+.+..|+|--. ++..+..
T Consensus 105 ~EV~Svdwn~~~r~~~ltsSWD~------TiKLW~~~r~-----~Sv~Tf~gh~----~~Iy~a~~sp~~~nlfas~Sg- 168 (311)
T KOG0277|consen 105 REVYSVDWNTVRRRIFLTSSWDG------TIKLWDPNRP-----NSVQTFNGHN----SCIYQAAFSPHIPNLFASASG- 168 (311)
T ss_pred hheEEeccccccceeEEeeccCC------ceEeecCCCC-----cceEeecCCc----cEEEEEecCCCCCCeEEEccC-
Confidence 3455678888666665554 222 2345544433 2356677765 6678899999655 5544443
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
.+.-+||-++.. |+...|.....+...-.|+. -+..++++...++.-+.|
T Consensus 169 d~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~k------------y~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 169 DGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSK------------YNHNVLATGGVDNLVRGW 218 (311)
T ss_pred CceEEEEEecCC-CceeEEEeccceeEeecccc------------cCCcEEEecCCCceEEEE
Confidence 677778776655 44444543333444455664 445677776666554444
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.67 Score=45.34 Aligned_cols=208 Identities=13% Similarity=0.078 Sum_probs=100.8
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccC-CCCCCceeEEEEEEcCCCCc--ccc---E
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR-QDALNSTTEIVAIALNGQNI--QEP---K 237 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~-~~~~~~~~~l~~~d~~~~~~--~~~---~ 237 (732)
++++.+++++. +..+.+...-.-+.....+.+-+|-.++|+.+.-+.. +..--+...||.+.-.-+.. ... .
T Consensus 39 dNqVhll~~d~--e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 39 DNQVHLLRLDS--EGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred cceeEEEEecC--ccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 35666666664 2222222110001234466667887777777665432 22111245677665432220 001 1
Q ss_pred Ecc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC--CCc-
Q 004735 238 VLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGE- 313 (732)
Q Consensus 238 ~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp--Dg~- 313 (732)
.|. ..-+...-..|-||+.+|+-+. ...|.+++++.+.+........+.. ........-.||| ||.
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~---------dn~i~l~~l~ess~~vaev~ss~s~-e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD---------DNNIVLWSLDESSKIVAEVLSSESA-EMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec---------cCceEEEEcccCcchheeecccccc-cccceecccccCCCCccce
Confidence 111 1123445678999999998775 2337788887333321111122211 1114566778999 777
Q ss_pred EEEEEeccCCeeeEEEEeccCCeE-EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
+..+.+ ..|..+|..+-+. -.|... . .. -.+++.|-| +.+.++.+...+|+-+||-....+..
T Consensus 187 v~tt~d-----~tl~~~D~RT~~~~~sI~dA--H---gq---~vrdlDfNp---nkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 187 VATTSD-----STLQFWDLRTMKKNNSIEDA--H---GQ---RVRDLDFNP---NKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred EEEeCC-----CcEEEEEccchhhhcchhhh--h---cc---eeeeccCCC---CceEEEEEcCCCccEEEEeccCCCcc
Confidence 443332 3466666654321 111100 0 00 011122221 56678888888899999955433333
Q ss_pred eEEeccC
Q 004735 393 LSLLDIP 399 (732)
Q Consensus 393 ~~~lt~~ 399 (732)
++.|...
T Consensus 251 v~el~~H 257 (370)
T KOG1007|consen 251 VQELPGH 257 (370)
T ss_pred ccccCCC
Confidence 4444443
|
|
| >KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.12 Score=50.09 Aligned_cols=95 Identities=19% Similarity=0.061 Sum_probs=58.0
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCCCCCCC--hhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYG--REFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g--~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
.| +|++||.+.......+....+.+.+. |..|.+.+. |.| .++...+ -+.+..+.+.+.... -
T Consensus 24 ~P-~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~lei----g~g~~~s~l~pl--------~~Qv~~~ce~v~~m~-~ 89 (296)
T KOG2541|consen 24 VP-VIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEI----GDGIKDSSLMPL--------WEQVDVACEKVKQMP-E 89 (296)
T ss_pred CC-EEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEe----cCCcchhhhccH--------HHHHHHHHHHHhcch-h
Confidence 35 56689975555555566677777776 899999997 333 3333322 122333334443222 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHh---CCCcceEEEee
Q 004735 572 DEKRLCITGGSAGGYTTLAALA---FRDTFKAGASL 604 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~ 604 (732)
-++-+-++|.|.||.++-.++. .|. ++-.|+.
T Consensus 90 lsqGynivg~SQGglv~Raliq~cd~pp-V~n~ISL 124 (296)
T KOG2541|consen 90 LSQGYNIVGYSQGGLVARALIQFCDNPP-VKNFISL 124 (296)
T ss_pred ccCceEEEEEccccHHHHHHHHhCCCCC-cceeEec
Confidence 2577999999999999987776 443 4444443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=3.2 Score=45.59 Aligned_cols=231 Identities=13% Similarity=0.063 Sum_probs=119.9
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++..+ .++.|=.+++..+=-....++.+ +.-+....+|++.|+ | |...- ...|.-+|+.+++
T Consensus 39 ~lAvsR-t~g~IEiwN~~~~w~~~~vi~g~---~drsIE~L~W~e~~R-L-FS~g~--------sg~i~EwDl~~lk--- 101 (691)
T KOG2048|consen 39 QLAVSR-TDGNIEIWNLSNNWFLEPVIHGP---EDRSIESLAWAEGGR-L-FSSGL--------SGSITEWDLHTLK--- 101 (691)
T ss_pred ceeeec-cCCcEEEEccCCCceeeEEEecC---CCCceeeEEEccCCe-E-EeecC--------CceEEEEecccCc---
Confidence 455444 45555556655310122333332 244566788995555 3 44332 2578888888876
Q ss_pred cEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-
Q 004735 236 PKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 313 (732)
Q Consensus 236 ~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~- 313 (732)
+.. +....+..-+.+.+|-++.++.-. ++ +.|+.++.. .+++.-.+.+.... ..+-.+.|.|+|.
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~Igc-dd-------Gvl~~~s~~-p~~I~~~r~l~rq~----sRvLslsw~~~~~~ 168 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGC-DD-------GVLYDFSIG-PDKITYKRSLMRQK----SRVLSLSWNPTGTK 168 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeec-CC-------ceEEEEecC-CceEEEEeeccccc----ceEEEEEecCCccE
Confidence 332 222233344566688887776543 22 347777766 56665556665554 5677899999997
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEe-c----ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAI-Y----SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l-~----~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|+--+. .| .|-.+|...+..-.+ + ..........|+. .|+ .++.| .+.+..|.-..| |.
T Consensus 169 i~~Gs~--Dg--~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv-----~~L----rd~tI-~sgDS~G~V~FW--d~ 232 (691)
T KOG2048|consen 169 IAGGSI--DG--VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV-----LFL----RDSTI-ASGDSAGTVTFW--DS 232 (691)
T ss_pred EEeccc--Cc--eEEEEEcCCCceEEEeeecccccccCCceEEEEE-----EEe----ecCcE-EEecCCceEEEE--cc
Confidence 553322 23 344556666543332 2 1111122346764 555 33333 344455655555 66
Q ss_pred CCCceEE-eccCCCceEEee-EeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 389 FGHSLSL-LDIPFTDIDNIT-LGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 389 ~~~~~~~-lt~~~~~v~~~~-~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.+.+.+ ....+.+|..+. .+++..++ .++.+ +.+..+.+.+++
T Consensus 233 ~~gTLiqS~~~h~adVl~Lav~~~~d~vf-saGvd--~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 233 IFGTLIQSHSCHDADVLALAVADNEDRVF-SAGVD--PKIIQYSLTTNK 278 (691)
T ss_pred cCcchhhhhhhhhcceeEEEEcCCCCeEE-EccCC--CceEEEEecCCc
Confidence 6655433 223466677773 33323333 33333 345555555543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.9 Score=44.05 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=68.7
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC--CCCccccEE--c--ccCCCceeccccCCCCCeEEEEeccC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN--GQNIQEPKV--L--VSGSDFYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~~~~--l--t~~~~~~~~p~~SPDG~~la~~~~~~ 265 (732)
..+...+|+|+++.+.|.+. .+++++.++ +.. ... + |.+.+|+ -.||......|...
T Consensus 160 ~~ns~~~snd~~~~~~Vgds---------~~Vf~y~id~~sey---~~~~~~a~t~D~gF~--~S~s~~~~~FAv~~--- 222 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDS---------RRVFRYAIDDESEY---IENIYEAPTSDHGFY--NSFSENDLQFAVVF--- 222 (344)
T ss_pred ceeeeEEcCCCceEEEecCC---------CcceEEEeCCccce---eeeeEecccCCCcee--eeeccCcceEEEEe---
Confidence 34667899999998888552 355555444 333 222 2 2233343 35777666666554
Q ss_pred CCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc--EEEEEeccCCeeeEEEEeccCCeEE
Q 004735 266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVL 338 (732)
Q Consensus 266 ~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~--l~~~~~~~~g~~~l~~~d~~~g~~~ 338 (732)
..+.+.++|+...+.+-....-...+.. +.+....|++-|- |+|.+. ++..+.++|..++...
T Consensus 223 -----Qdg~~~I~DVR~~~tpm~~~sstrp~hn--Ga~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 223 -----QDGTCAIYDVRNMATPMAEISSTRPHHN--GAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNH 287 (344)
T ss_pred -----cCCcEEEEEecccccchhhhcccCCCCC--CceEEEEecCCCcceEEEEec---CcceEEEEEcccCcee
Confidence 2345888888733433111000111112 6667778998776 777764 4566778888886543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.5 Score=46.92 Aligned_cols=230 Identities=11% Similarity=0.039 Sum_probs=121.8
Q ss_pred cccCCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeE
Q 004735 143 QEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (732)
Q Consensus 143 ~~~g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 222 (732)
|+....++.++.+.++......+.|-+|+.++. ...|.++.+ ..-...|-|.+++|+.-+. +..
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~-kciRTi~~~------y~l~~~Fvpgd~~Iv~G~k---------~Ge 435 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNRDTL-KCIRTITCG------YILASKFVPGDRYIVLGTK---------NGE 435 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEccCc-ceeEEeccc------cEEEEEecCCCceEEEecc---------CCc
Confidence 344556788888877666666667888887752 456666654 1122358888887654433 257
Q ss_pred EEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec--CCCceeee------EEecC
Q 004735 223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDVYKR------VCVAG 294 (732)
Q Consensus 223 l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~--~~g~~~~~------~~~~~ 294 (732)
|-++|+.+... +..+....+.......+||++..+-.+.|.. ..+|-+.+. ..|+.+++ +.+.-
T Consensus 436 l~vfdlaS~~l--~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt------VkfWdf~l~~~~~gt~~k~lsl~~~rtLel 507 (888)
T KOG0306|consen 436 LQVFDLASASL--VETIRAHDGAIWSISLSPDNKGFVTGSADKT------VKFWDFKLVVSVPGTQKKVLSLKHTRTLEL 507 (888)
T ss_pred eEEEEeehhhh--hhhhhccccceeeeeecCCCCceEEecCCcE------EEEEeEEEEeccCcccceeeeeccceEEec
Confidence 77888887651 2222223344556778999999877664432 222222111 12432221 12222
Q ss_pred CCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE-ecccccccCCCceeecccceeeeeecCCCCEEEE
Q 004735 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC 373 (732)
Q Consensus 295 ~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~ 373 (732)
. ..+-.+..||||+++.++-- +..-.+|-+| +=+... |... .-|.-+. ..++ |++ +++
T Consensus 508 ~-----ddvL~v~~Spdgk~LaVsLL-dnTVkVyflD--tlKFflsLYGH----kLPV~sm-----DIS~---DSk-liv 566 (888)
T KOG0306|consen 508 E-----DDVLCVSVSPDGKLLAVSLL-DNTVKVYFLD--TLKFFLSLYGH----KLPVLSM-----DISP---DSK-LIV 566 (888)
T ss_pred c-----ccEEEEEEcCCCcEEEEEec-cCeEEEEEec--ceeeeeeeccc----ccceeEE-----eccC---CcC-eEE
Confidence 2 23456789999995555544 4555677655 322211 1111 1222221 1221 444 555
Q ss_pred EEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEe
Q 004735 374 SYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 374 ~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~ 418 (732)
+...+-...+|=+|... .-+-+-..+.+|..+ ..+...++|.++
T Consensus 567 TgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred eccCCCceEEeccccch-hhhhhhcccCceeEEEEcccceeEEEec
Confidence 55556667788666532 233444455666666 444444444443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.5 Score=48.56 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=51.9
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
.-+++++||+.|+....+ ..|-+++.-.-.. ..........+....|||||+.|+++..+
T Consensus 148 k~vaf~~~gs~latgg~d---------g~lRv~~~Ps~~t--~l~e~~~~~eV~DL~FS~dgk~lasig~d--------- 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD---------GTLRVWEWPSMLT--ILEEIAHHAEVKDLDFSPDGKFLASIGAD--------- 207 (398)
T ss_pred eEEEEcCCCCEeeecccc---------ceEEEEecCcchh--hhhhHhhcCccccceeCCCCcEEEEecCC---------
Confidence 345688888876655432 2444445221110 11111222345567899999999999833
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
...|++++ +|.. +......+.+ ......+|+.|+
T Consensus 208 ~~~VW~~~-~g~~--~a~~t~~~k~--~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 208 SARVWSVN-TGAA--LARKTPFSKD--EMFSSCRFSVDN 241 (398)
T ss_pred ceEEEEec-cCch--hhhcCCcccc--hhhhhceecccC
Confidence 36777887 6632 2211212112 566778888887
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.17 Score=48.73 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=25.0
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeec
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY 605 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~ 605 (732)
-.+.+|.|-||||.++..+.. ++.-++-+-+.+
T Consensus 194 ~g~~~~~g~Smgg~~a~~vgS~~q~Pva~~p~l~ 227 (371)
T KOG1551|consen 194 LGNLNLVGRSMGGDIANQVGSLHQKPVATAPCLN 227 (371)
T ss_pred cccceeeeeecccHHHHhhcccCCCCcccccccc
Confidence 468999999999999999987 666554443333
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.032 Score=58.63 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=36.0
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCce---eccccCCCCCeEEEE
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY---AFPRMDPRGERMAWI 261 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~---~~p~~SPDG~~la~~ 261 (732)
.+.++|||||++|+.|..+. -|-++|-++.+ ..-+. ..++ --.+||||||+|+--
T Consensus 293 in~f~FS~DG~~LA~VSqDG---------fLRvF~fdt~e---Llg~m--kSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQDG---------FLRIFDFDTQE---LLGVM--KSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred ccceeEcCCCceEEEEecCc---------eEEEeeccHHH---HHHHH--HhhccceEEEEEcCCccEEEec
Confidence 35688999999999998743 55566766544 22221 1111 235899999988743
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.05 Score=53.89 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=60.9
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHH-HHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 574 (732)
|.|+++|+. ......|..+...+... ..|+..+.+|.++.... ..+.+|..+. ++.+.+. -...
T Consensus 1 ~pLF~fhp~--~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~----------~~~l~~~a~~yv~~Ir~~--QP~G 65 (257)
T COG3319 1 PPLFCFHPA--GGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQP----------FASLDDMAAAYVAAIRRV--QPEG 65 (257)
T ss_pred CCEEEEcCC--CCcHHHHHHHHHHhccC-ceeeccccCcccccccc----------cCCHHHHHHHHHHHHHHh--CCCC
Confidence 468899997 33345555566666555 78899998876532111 1223343332 2222222 1235
Q ss_pred cEEEEEcChHHHHHHHHHh----CCCcceEEEeecCcCC
Q 004735 575 RLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVAD 609 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~~d 609 (732)
.+.+.|+|+||.+|.-++. ..+.+...+++..+..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 7999999999999998876 4556777777666554
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.4 Score=48.99 Aligned_cols=160 Identities=10% Similarity=0.034 Sum_probs=87.2
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
..++.|+||+.++++.. ...|++-... +. .+.+..+. ....|.|+++| ++ |+..+. +..
T Consensus 337 ~s~avS~dg~~~A~v~~---------~~~l~vg~~~-~~---~~~~~~~~-~Lt~PS~d~~g-~v-Wtv~~g-----~~~ 395 (557)
T PRK13615 337 DAATLSADGRQAAVRNA---------SGVWSVGDGD-RD---AVLLDTRP-GLVAPSLDAQG-YV-WSTPAS-----DPR 395 (557)
T ss_pred ccceEcCCCceEEEEcC---------CceEEEecCC-Cc---ceeeccCC-ccccCcCcCCC-CE-EEEeCC-----Cce
Confidence 45789999999888833 1355554443 33 44554433 35679999999 55 444222 122
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEE--EEeccCCeEEEe-cc------c
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIESNNEVLAI-YS------L 343 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~--~~d~~~g~~~~l-~~------~ 343 (732)
.+. ....+|+...+..-...+ +.+..++.|+||. ++++.+. .|..+|+ .+--.++..+.| +. .
T Consensus 396 ~l~--~~~~~G~~~~v~v~~~~~----~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~ 468 (557)
T PRK13615 396 GLV--AWGPDGVGHPVAVSWTAT----GRVVSLEVARDGARVLVQLET-GAGPQLLVASIVRDGGVPTSLTTTPLELLAS 468 (557)
T ss_pred EEE--EecCCCceEEeeccccCC----CeeEEEEeCCCccEEEEEEec-CCCCEEEEEEEEeCCCcceEeeeccEEcccC
Confidence 222 233246553322111111 4578899999998 7776654 4444444 233345544455 31 1
Q ss_pred ccccCCCceeecccceeeeeecCCCCEEEEEE-EECCEEEEEEEECCCCceE
Q 004735 344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 344 ~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s-~~~g~~~ly~~~~~~~~~~ 394 (732)
.....+..|. ++..|+... ...+...++++.+.+...+
T Consensus 469 l~~v~sl~W~-------------~~~~laVl~~~~~~~~~v~~v~v~g~~~~ 507 (557)
T PRK13615 469 PGTPLDATWV-------------DELDVATLTLAPDGERQVELHQVGGPSKD 507 (557)
T ss_pred cCcceeeEEc-------------CCCEEEEEeccCCCCceEEEEECCCcccc
Confidence 1123334455 455565555 3445567888888765443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.87 Score=45.26 Aligned_cols=154 Identities=12% Similarity=0.124 Sum_probs=89.3
Q ss_pred CceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCC---CCCCeEeeceeecCC-CCEEEEEEeccCCCCCCceeE
Q 004735 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPR-FNRYVTVREDRRQDALNSTTE 222 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~~ 222 (732)
+.+.-++.++|+.+. .+.||++.... .++++-.-+ .+.+. .+..|- ++.+++.-..+ ..+
T Consensus 97 I~~V~l~r~riVvvl--~~~I~VytF~~---n~k~l~~~et~~NPkGl----C~~~~~~~k~~LafPg~k-------~Gq 160 (346)
T KOG2111|consen 97 IKAVKLRRDRIVVVL--ENKIYVYTFPD---NPKLLHVIETRSNPKGL----CSLCPTSNKSLLAFPGFK-------TGQ 160 (346)
T ss_pred eeeEEEcCCeEEEEe--cCeEEEEEcCC---ChhheeeeecccCCCce----EeecCCCCceEEEcCCCc-------cce
Confidence 455667788888884 56799998873 455544321 01111 112221 22222221111 368
Q ss_pred EEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce-eeeEEecCCCCCccc
Q 004735 223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVE 301 (732)
Q Consensus 223 l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~-~~~~~~~~~~~~~~~ 301 (732)
|-++|+...+...+..+......++-.+.+-+|..||-.+. .++=|.++|.. +|+. .+.+ .|.+ . .
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-------kGTLIRIFdt~-~g~~l~E~R--RG~d-~--A 227 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-------KGTLIRIFDTE-DGTLLQELR--RGVD-R--A 227 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-------CcEEEEEEEcC-CCcEeeeee--cCCc-h--h
Confidence 88888876551112444444444566788999999886651 34568899988 6654 3333 2322 1 5
Q ss_pred cCcCceeCCCCc-EEEEEeccCCeeeEEEEe
Q 004735 302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI 331 (732)
Q Consensus 302 ~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d 331 (732)
.+..+++|||++ |.+.++. |.-+|+.+.
T Consensus 228 ~iy~iaFSp~~s~LavsSdK--gTlHiF~l~ 256 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDK--GTLHIFSLR 256 (346)
T ss_pred eEEEEEeCCCccEEEEEcCC--CeEEEEEee
Confidence 677899999999 6655554 776776553
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.20 E-value=4.4 Score=43.54 Aligned_cols=230 Identities=10% Similarity=0.016 Sum_probs=114.2
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCC--CEEEEEEeccCCCCCCceeEEEEEE
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF--NRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
..++.|..++.+...+.++.+++.+-.+....|. ..+++++.+||-+ .+|++..-...+.+. .-+||.+.
T Consensus 131 ~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~------~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa--~vri~~~~ 202 (566)
T KOG2315|consen 131 PQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLS------VSGITMLSLSPGPEPPFVAVYVPEKKGAPA--SVRIYKYP 202 (566)
T ss_pred cccccchhhhhhhhcceEEEEecCCccceeeeee------ccceeeEEecCCCCCceEEEEccCCCCCCc--EEEEeccc
Confidence 3344443334444456788888764102222332 2345777888864 344443333333331 35666665
Q ss_pred cCCCCccccEEcccCC---CceeccccCCCCCeEEEEec---cCCCCC-CCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 228 LNGQNIQEPKVLVSGS---DFYAFPRMDPRGERMAWIEW---HHPNMP-WDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~---~~~~~p~~SPDG~~la~~~~---~~~~~~-~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
.. +. -..+.... ....+..|.+-|.-|..+.. |..+.. ++...||.++++ |+.. ...+...
T Consensus 203 ~~-~~---~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g~s~-~V~L~k~----- 270 (566)
T KOG2315|consen 203 EE-GQ---HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--GESV-SVPLLKE----- 270 (566)
T ss_pred cc-cc---cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--CceE-EEecCCC-----
Confidence 32 21 11222111 11235789999998876542 333322 367889999987 4332 2233333
Q ss_pred ccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
+-+..+.|+|+|+ +.++..- . -..+-.+|+.+.-+-.+.++.. ...-|++ .|+.|++....+-
T Consensus 271 GPVhdv~W~~s~~EF~VvyGf-M-PAkvtifnlr~~~v~df~egpR--N~~~fnp------------~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGF-M-PAKVTIFNLRGKPVFDFPEGPR--NTAFFNP------------HGNIILLAGFGNL 334 (566)
T ss_pred CCceEEEECCCCCEEEEEEec-c-cceEEEEcCCCCEeEeCCCCCc--cceEECC------------CCCEEEEeecCCC
Confidence 5688999999998 6555432 1 1234456665443333322211 1122332 6777777665433
Q ss_pred EEEEEEEECCCCceEEeccC---CCceEEeeEeCCEEEEEEe
Q 004735 380 RSYLGILDDFGHSLSLLDIP---FTDIDNITLGNDCLFVEGA 418 (732)
Q Consensus 380 ~~~ly~~~~~~~~~~~lt~~---~~~v~~~~~~~~~~~~~~~ 418 (732)
...+-+.|..+ .++|... +..+-+ ..+++++++.++
T Consensus 335 ~G~mEvwDv~n--~K~i~~~~a~~tt~~e-W~PdGe~flTAT 373 (566)
T KOG2315|consen 335 PGDMEVWDVPN--RKLIAKFKAANTTVFE-WSPDGEYFLTAT 373 (566)
T ss_pred CCceEEEeccc--hhhccccccCCceEEE-EcCCCcEEEEEe
Confidence 33344445544 3344443 223333 345555555544
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.8 Score=48.23 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=98.5
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCee
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~ 325 (732)
...+..|+||+.+|++.. +...|++.... +.. ..++.+ ..+..|.|+++| -+|+..+ .+..
T Consensus 345 ~~s~avS~~g~~~A~~~~-------~~~~l~~~~~g--~~~--~~~~~g------~~Lt~PS~d~~g-~vWtv~~-g~~~ 405 (573)
T PRK13614 345 PASPAESPVSQTVAFLNG-------SRTTLYTVSPG--QPA--RALTSG------STLTRPSFSPQD-WVWTAGP-GGNG 405 (573)
T ss_pred ccceeecCCCceEEEecC-------CCcEEEEecCC--Ccc--eeeecC------CCccCCcccCCC-CEEEeeC-CCCc
Confidence 346889999999999842 23467776543 332 233443 347899999998 4555555 3333
Q ss_pred eEEEEeccC-CeEEEecccccccCCCceeec--ccceeeeeecCCCCEEEEEEEECCEEEEEE--EE-CCCCceEEeccC
Q 004735 326 NLHKWIESN-NEVLAIYSLDAEFSRPLWVFG--INSYEIIQSHGEKNLIACSYRQNGRSYLGI--LD-DFGHSLSLLDIP 399 (732)
Q Consensus 326 ~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~--~~-~~~~~~~~lt~~ 399 (732)
+|.++..++ ++...... ......|..+ +..+..++ ||-++++..+.+|..+||+ +- ...|..+.|+.+
T Consensus 406 ~vv~~~~~g~~~~~~~~~---~~v~~~~l~g~~I~~lrvSr---DG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~ 479 (573)
T PRK13614 406 RIVAYRPTGVAEGAQAPT---VTLTADWLAGRTVKELRVSR---EGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAP 479 (573)
T ss_pred eEEEEecCCCcccccccc---eeecccccCCCeeEEEEECC---CccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCc
Confidence 666665433 22111100 0011234432 45566665 8888888887788766654 32 345665666654
Q ss_pred -----CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 400 -----FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 400 -----~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
...+.++ ...++.+++..........++++.+.++..
T Consensus 480 ~~~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~ 522 (573)
T PRK13614 480 ITLAADSDADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQP 522 (573)
T ss_pred eecccCCCcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCCc
Confidence 2344555 566778888777666666788888866653
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.046 Score=53.24 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhC-----CCcceEEEeecCc
Q 004735 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-----RDTFKAGASLYGV 607 (732)
Q Consensus 558 ~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~-----p~~~~a~v~~~~~ 607 (732)
...|++|+.+.-.-.+++|.+.|||.||++|..++.+ .+++..+....+.
T Consensus 68 q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 68 QKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 3455555544311124569999999999999988872 4578888877765
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.026 Score=37.83 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=27.3
Q ss_pred EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC--CEEEEEE
Q 004735 338 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGI 385 (732)
Q Consensus 338 ~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~--g~~~ly~ 385 (732)
++++........|.|++ ||+.|+|++++. |..+||+
T Consensus 2 ~~~t~~~~~~~~p~~Sp------------DGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSP------------DGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-T------------TSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEec------------CCCEEEEEecCCCCCCcCEEC
Confidence 45665555566788887 999999999998 8888985
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.5 Score=43.12 Aligned_cols=132 Identities=10% Similarity=0.051 Sum_probs=78.8
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~ 322 (732)
.+.+....|++ -..++-.+||+ .|.+.|+. +|.. ...+... ..+..+..+|..+|+.....
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDH--------TIk~WDle-tg~~--~~~~~~~-----ksl~~i~~~~~~~Ll~~gss-- 320 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDH--------TIKVWDLE-TGGL--KSTLTTN-----KSLNCISYSPLSKLLASGSS-- 320 (423)
T ss_pred ccceeeEEEcC-CCceEeecccc--------eEEEEEee-cccc--eeeeecC-----cceeEeecccccceeeecCC--
Confidence 34566778987 44566666666 28888998 6644 2333333 34556777887765444322
Q ss_pred CeeeEEEEeccCCeE----EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 323 GFWNLHKWIESNNEV----LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 323 g~~~l~~~d~~~g~~----~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
..+|.++||.++.- ..+......+....|++ .+...+++...++...||-+....+.+-.|..
T Consensus 321 -dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp------------~~~~~~~S~S~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 321 -DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP------------TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred -CCceeecCCCCCCCceeEEeeecchhhhhheecCC------------CCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence 34677789887532 23334444555666765 55566677777888888866554444555555
Q ss_pred CCCceEEe
Q 004735 399 PFTDIDNI 406 (732)
Q Consensus 399 ~~~~v~~~ 406 (732)
.+.-|-.+
T Consensus 388 h~DKvl~v 395 (423)
T KOG0313|consen 388 HNDKVLSV 395 (423)
T ss_pred CCceEEEE
Confidence 54444444
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.86 Score=51.29 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=90.3
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCC----ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeE-EEEEE
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE-IVAIA 227 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~-l~~~d 227 (732)
+++.+++.......||+-++..+ +. .+.+.. +..+..|+|+++| . +++.+..... .+ |.++.
T Consensus 373 ~g~~~A~v~~~~~~l~vg~~~~~-~~~~~~~~~~~~-----~~~Lt~PS~d~~g-~-vWtvd~~~~~-----~~vl~v~~ 439 (599)
T PRK13613 373 DESRAAGISADGDSVYVGSLTPG-ASIGVHSWGVTA-----DGRLTSPSWDGRG-D-LWVVDRDPAD-----PRLLWLLQ 439 (599)
T ss_pred CCceEEEEcCCCcEEEEeccCCC-Cccccccceeec-----cCcccCCcCcCCC-C-EEEecCCCCC-----ceEEEEEc
Confidence 45577777654457777666431 22 222222 2346788999998 3 3443321111 23 44444
Q ss_pred cCCCCccccEEcccC--C-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC--CCc--eeeeEEecCCCCCcc
Q 004735 228 LNGQNIQEPKVLVSG--S-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGD--VYKRVCVAGFDPTIV 300 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~--~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~--~g~--~~~~~~~~~~~~~~~ 300 (732)
.+|+ +..+... . ..+...+.|+||.++|.+.... ...+|++.-+.. +|. +...+.+...-
T Consensus 440 -~~G~---~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~-----g~~~v~va~V~R~~~G~~~l~~~~~l~~~l---- 506 (599)
T PRK13613 440 -GDGE---PVEVRTPELDGHRVVAVRVARDGVRVALIVEKD-----GRRSLQIGRIVRDAKAVVSVEEFRSLAPEL---- 506 (599)
T ss_pred -CCCc---EEEeeccccCCCEeEEEEECCCccEEEEEEecC-----CCcEEEEEEEEeCCCCcEEeeccEEeccCC----
Confidence 3555 4333221 1 2466789999999999987332 245677766542 343 22222222222
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeE
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
..+..+.|..+++|++......+...++++++++...
T Consensus 507 ~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 507 EDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred CccceeEEcCCCEEEEEeccCCCCcceEEEecCCcCc
Confidence 3467889999988766543324577899998887543
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.89 Score=50.46 Aligned_cols=154 Identities=10% Similarity=0.006 Sum_probs=85.7
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 152 ~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.++..+++.+. ++.|++-... +..+.+... ..+..|+|+++| ++ ++..+.. ...+.... .+|
T Consensus 343 ~dg~~~A~v~~-~~~l~vg~~~---~~~~~~~~~-----~~Lt~PS~d~~g-~v-Wtv~~g~------~~~l~~~~-~~G 404 (557)
T PRK13615 343 ADGRQAAVRNA-SGVWSVGDGD---RDAVLLDTR-----PGLVAPSLDAQG-YV-WSTPASD------PRGLVAWG-PDG 404 (557)
T ss_pred CCCceEEEEcC-CceEEEecCC---CcceeeccC-----CccccCcCcCCC-CE-EEEeCCC------ceEEEEec-CCC
Confidence 34556777743 4456665543 344444432 345778999999 43 4433221 13333333 234
Q ss_pred CccccEEccc---CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC-CCceeee----EEecCCCCCccccC
Q 004735 232 NIQEPKVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKR----VCVAGFDPTIVESP 303 (732)
Q Consensus 232 ~~~~~~~lt~---~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~-~g~~~~~----~~~~~~~~~~~~~~ 303 (732)
+ +..+.- ....+...+.|+||.++|.+.... ...+|++.-+.. +|....+ +.+.... ..+
T Consensus 405 ~---~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l----~~v 472 (557)
T PRK13615 405 V---GHPVAVSWTATGRVVSLEVARDGARVLVQLETG-----AGPQLLVASIVRDGGVPTSLTTTPLELLASP----GTP 472 (557)
T ss_pred c---eEEeeccccCCCeeEEEEeCCCccEEEEEEecC-----CCCEEEEEEEEeCCCcceEeeeccEEcccCc----Ccc
Confidence 4 333321 123466789999999999986332 245687766553 3322122 2222122 456
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEeccCC
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g 335 (732)
....|..|++|+.......+..+++++.+.+.
T Consensus 473 ~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 473 LDATWVDELDVATLTLAPDGERQVELHQVGGP 504 (557)
T ss_pred eeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence 78899999987666643244566788877654
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.064 Score=52.33 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.9
Q ss_pred CCcEEEEEcChHHHHHHHHHh
Q 004735 573 EKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~ 593 (732)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 368999999999999977665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=4.6 Score=40.15 Aligned_cols=210 Identities=12% Similarity=0.176 Sum_probs=104.2
Q ss_pred CCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEE
Q 004735 79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTV 157 (732)
Q Consensus 79 ~~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i 157 (732)
+..+.|.+....++++.|+| .+.+|-+-..+. .|+..+.. |..-.-.|-.+ ++..-.-. ...++..
T Consensus 76 i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~-----~iVElt~~--GdlirtiPL~g-----~~DpE~Ie-yig~n~f 142 (316)
T COG3204 76 IDAKPILGETANVSSLTYNPDTRTLFAVTNKPA-----AIVELTKE--GDLIRTIPLTG-----FSDPETIE-YIGGNQF 142 (316)
T ss_pred EeccccccccccccceeeCCCcceEEEecCCCc-----eEEEEecC--CceEEEecccc-----cCChhHeE-EecCCEE
Confidence 44445666656689999999 666766654332 45665544 33322222221 11111101 1223455
Q ss_pred EEEeCCCCeEEEEeCCCCCCCce-----ecCCCCCCC-CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSPL-----PITPDYGEP-LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~~-----~lt~~~~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
+.++++++.||.+.++.+ .... .++-+..+. ..-+-..+|+|+.++++++.+..+ ..||.++....
T Consensus 143 vi~dER~~~l~~~~vd~~-t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-------~~I~~~~~~~~ 214 (316)
T COG3204 143 VIVDERDRALYLFTVDAD-TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-------IGIFEVTQSPS 214 (316)
T ss_pred EEEehhcceEEEEEEcCC-ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-------cEEEEEecCCc
Confidence 666777777887777641 1111 122111111 234566789999999888887664 67888774331
Q ss_pred CccccEEcccCC--------CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEec-CCCC--Ccc
Q 004735 232 NIQEPKVLVSGS--------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDP--TIV 300 (732)
Q Consensus 232 ~~~~~~~lt~~~--------~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~-~~~~--~~~ 300 (732)
.. ...+.... .-..+..+.+.-..|..++ +++. .|..+|.+ |++.....+. +... .-.
T Consensus 215 ~l--~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS-~ESr------~l~Evd~~--G~~~~~lsL~~g~~gL~~di 283 (316)
T COG3204 215 SL--SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLS-DESR------RLLEVDLS--GEVIELLSLTKGNHGLSSDI 283 (316)
T ss_pred cc--ccccccCcccccceEeeccccceecCCCCcEEEEe-cCCc------eEEEEecC--CCeeeeEEeccCCCCCcccC
Confidence 10 00111111 1123456666555666666 4433 25555554 5543333232 2210 000
Q ss_pred ccCcCceeCCCCcEEEEEec
Q 004735 301 ESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~ 320 (732)
.....++-.++|.||.++..
T Consensus 284 pqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 284 PQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred CCcceeEECCCCCEEEEecC
Confidence 12335566677767777654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=3.4 Score=41.31 Aligned_cols=136 Identities=11% Similarity=0.006 Sum_probs=70.1
Q ss_pred eEEEEEEcCCCCccccEEcccCC----C--ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee--EEe
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGS----D--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--VCV 292 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~----~--~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~--~~~ 292 (732)
+-|.++|.-+|+ .+.--..- + -.....|||||.+|+ .. .+.-|.++|+...|..-.. ++.
T Consensus 133 ~PIh~wdaftG~---lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aG--------ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 133 QPIHLWDAFTGK---LRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AG--------YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred Cceeeeeccccc---cccchhhhhhHHhhhhheeEEecCCCCeEe-ec--------ccceEEEeeccCCCCCCcchhhhh
Confidence 456777877776 44322111 1 112468999999994 43 2445899998645532111 122
Q ss_pred cCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCE
Q 004735 293 AGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNL 370 (732)
Q Consensus 293 ~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 370 (732)
.+.. ...+-+...+++|-.. ++..... .....||. -+++..-.+. .....++...|-+ +|++
T Consensus 201 ~~k~-gq~giisc~a~sP~~~~~~a~gsY-~q~~giy~--~~~~~pl~llggh~gGvThL~~~e------------dGn~ 264 (406)
T KOG2919|consen 201 KGKF-GQKGIISCFAFSPMDSKTLAVGSY-GQRVGIYN--DDGRRPLQLLGGHGGGVTHLQWCE------------DGNK 264 (406)
T ss_pred cccc-cccceeeeeeccCCCCcceeeecc-cceeeeEe--cCCCCceeeecccCCCeeeEEecc------------CcCe
Confidence 2221 1114456777888543 3333222 12334554 3344443333 3344555566665 7777
Q ss_pred EEEEEEECCEEEEE
Q 004735 371 IACSYRQNGRSYLG 384 (732)
Q Consensus 371 l~~~s~~~g~~~ly 384 (732)
|+..+..+..--.|
T Consensus 265 lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 265 LFSGARKDDKILCW 278 (406)
T ss_pred ecccccCCCeEEEE
Confidence 77766655543333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=5 Score=44.03 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=37.1
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEE
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRY 205 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l 205 (732)
.+|.++|..++... +++++++|...| +....|... .....-.+||.||++.
T Consensus 18 ~afkPDGsqL~lAA--g~rlliyD~ndG-~llqtLKgH----KDtVycVAys~dGkrF 68 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA--GSRLLVYDTSDG-TLLQPLKGH----KDTVYCVAYAKDGKRF 68 (1081)
T ss_pred eEECCCCceEEEec--CCEEEEEeCCCc-ccccccccc----cceEEEEEEccCCcee
Confidence 45777777887773 567999999874 555566554 4566778899999973
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.79 Score=49.84 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=43.6
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEE
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAW 260 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~ 260 (732)
...+.+|-|||.+++.... +.|+++|...|.. ...|-...+.++-.+||.||++.|-
T Consensus 14 ci~d~afkPDGsqL~lAAg----------~rlliyD~ndG~l--lqtLKgHKDtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG----------SRLLVYDTSDGTL--LQPLKGHKDTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred chheeEECCCCceEEEecC----------CEEEEEeCCCccc--ccccccccceEEEEEEccCCceecc
Confidence 4578899999999877765 6899999987761 3444455567778899999998653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.80 E-value=1 Score=45.67 Aligned_cols=142 Identities=7% Similarity=0.046 Sum_probs=79.6
Q ss_pred eEEEEEEcCCCCccccEEccc---CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 221 TEIVAIALNGQNIQEPKVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~---~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
.+||+.|+..-+. ...|.. ..........++++.+|||=.... ..+|+++|+. + ++....+...+
T Consensus 106 e~IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t------~GdV~l~d~~-n--l~~v~~I~aH~- 173 (391)
T KOG2110|consen 106 ESIYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAYPGSTT------SGDVVLFDTI-N--LQPVNTINAHK- 173 (391)
T ss_pred ccEEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEecCCCC------CceEEEEEcc-c--ceeeeEEEecC-
Confidence 4799999987541 111211 112233345566777999875333 4569999976 3 23355555555
Q ss_pred CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCe-EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEE
Q 004735 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~ 376 (732)
+.+.-+++++||.++.++.. .|. -|.++...+|+ ..+.-.+ ..-.....+.|.+ +.. ++..+.
T Consensus 174 ---~~lAalafs~~G~llATASe-KGT-VIRVf~v~~G~kl~eFRRG-------~~~~~IySL~Fs~---ds~-~L~~sS 237 (391)
T KOG2110|consen 174 ---GPLAALAFSPDGTLLATASE-KGT-VIRVFSVPEGQKLYEFRRG-------TYPVSIYSLSFSP---DSQ-FLAASS 237 (391)
T ss_pred ---CceeEEEECCCCCEEEEecc-Cce-EEEEEEcCCccEeeeeeCC-------ceeeEEEEEEECC---CCC-eEEEec
Confidence 77889999999995555544 342 23334444443 2222222 1111234456653 555 444555
Q ss_pred ECCEEEEEEEECCC
Q 004735 377 QNGRSYLGILDDFG 390 (732)
Q Consensus 377 ~~g~~~ly~~~~~~ 390 (732)
..+.-||+.++...
T Consensus 238 ~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 238 NTETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEEEecccc
Confidence 57788999887543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.80 E-value=5.4 Score=40.60 Aligned_cols=224 Identities=14% Similarity=0.129 Sum_probs=113.9
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
+.+.+...+-.+.++|.++ ..+.+...-+ +......+.|-|-|.+|+-...+ +.|..++.++|--
T Consensus 163 k~l~tcSsDl~~~LWd~~~---~~~c~ks~~g-h~h~vS~V~f~P~gd~ilS~srD---------~tik~We~~tg~c-- 227 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDT---FFRCIKSLIG-HEHGVSSVFFLPLGDHILSCSRD---------NTIKAWECDTGYC-- 227 (406)
T ss_pred cEEEecCCccchhheeHHH---HHHHHHHhcC-cccceeeEEEEecCCeeeecccc---------cceeEEeccccee--
Confidence 3444443444466777653 1222221100 13445677889999876443321 5778889988751
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC----
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK---- 311 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD---- 311 (732)
+.+++...+.+...+.+-||+-+|-.+ +...|.++-+. ++.. ...+.+.+ ..+.-.+|.|+
T Consensus 228 v~t~~~h~ewvr~v~v~~DGti~As~s--------~dqtl~vW~~~-t~~~--k~~lR~hE----h~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 228 VKTFPGHSEWVRMVRVNQDGTIIASCS--------NDQTLRVWVVA-TKQC--KAELREHE----HPVECIAWAPESSYP 292 (406)
T ss_pred EEeccCchHhEEEEEecCCeeEEEecC--------CCceEEEEEec-cchh--hhhhhccc----cceEEEEecccccCc
Confidence 455666667777788899998776544 12335555555 4421 11222222 22333344443
Q ss_pred ----------Cc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 312 ----------GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 312 ----------g~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
|. +.+...+ . ..|-.+|..+|..- .+.. +...|+ +.+.|. .++.++++..+++.
T Consensus 293 ~i~~at~~~~~~~~l~s~Sr-D--ktIk~wdv~tg~cL--~tL~---ghdnwV---r~~af~----p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 293 SISEATGSTNGGQVLGSGSR-D--KTIKIWDVSTGMCL--FTLV---GHDNWV---RGVAFS----PGGKYILSCADDKT 357 (406)
T ss_pred chhhccCCCCCccEEEeecc-c--ceEEEEeccCCeEE--EEEe---ccccee---eeeEEc----CCCeEEEEEecCCc
Confidence 22 3333322 2 23556677777432 2111 234554 345666 56667777778888
Q ss_pred EEEEEEECCCCc-eEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEE
Q 004735 381 SYLGILDDFGHS-LSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSV 426 (732)
Q Consensus 381 ~~ly~~~~~~~~-~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 426 (732)
-++|-+. .++ .+.+..+..-+..+......-++++++-+.+..+
T Consensus 358 lrvwdl~--~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 358 LRVWDLK--NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred EEEEEec--cceeeeccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 8888654 332 3334433333444433333334445444433333
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.44 Score=52.70 Aligned_cols=152 Identities=12% Similarity=0.069 Sum_probs=95.0
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
..-.|+.+...|+-|-.+|+.. ..-...... ......|+.|||.-...++...+. +.|-.+|+..-.
T Consensus 144 tep~iliSGSQDg~vK~~DlR~--~~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~ds--------G~lqlWDlRqp~ 210 (839)
T KOG0269|consen 144 TEPNILISGSQDGTVKCWDLRS--KKSKSTFRS---NSESIRDVKFSPGYGNKFASIHDS--------GYLQLWDLRQPD 210 (839)
T ss_pred CCccEEEecCCCceEEEEeeec--ccccccccc---cchhhhceeeccCCCceEEEecCC--------ceEEEeeccCch
Confidence 3447888888888888899876 444444443 134568899999443323333322 567777886422
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
....+++...+++.-..|+|++.+||--. +. ..+.++|+. +++......+... ..+..+.|-|+-
T Consensus 211 -r~~~k~~AH~GpV~c~nwhPnr~~lATGG--RD------K~vkiWd~t-~~~~~~~~tInTi-----apv~rVkWRP~~ 275 (839)
T KOG0269|consen 211 -RCEKKLTAHNGPVLCLNWHPNREWLATGG--RD------KMVKIWDMT-DSRAKPKHTINTI-----APVGRVKWRPAR 275 (839)
T ss_pred -hHHHHhhcccCceEEEeecCCCceeeecC--CC------ccEEEEecc-CCCccceeEEeec-----ceeeeeeeccCc
Confidence 11345666667777778999999988544 22 236677776 5555444444333 456789999997
Q ss_pred c-EEEEEeccCCeeeEEEEecc
Q 004735 313 E-LFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 313 ~-l~~~~~~~~g~~~l~~~d~~ 333 (732)
+ .+.++.. -+...|+++|+.
T Consensus 276 ~~hLAtcsm-v~dtsV~VWDvr 296 (839)
T KOG0269|consen 276 SYHLATCSM-VVDTSVHVWDVR 296 (839)
T ss_pred cchhhhhhc-cccceEEEEeec
Confidence 7 4434333 356678888764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.9 Score=42.48 Aligned_cols=162 Identities=10% Similarity=0.079 Sum_probs=92.7
Q ss_pred CEEEEEeCCCCeEEEEeCCCCC-CCceecCC---------CCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKD-SSPLPITP---------DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~-~~~~~lt~---------~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
++...+...++.|.++|++..+ .+..-|+. .+..+.....+..|=|-..- .|++..- ...|-
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mFtssSF-------DhtlK 127 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MFTSSSF-------DHTLK 127 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-eeecccc-------cceEE
Confidence 3555666677888888886410 11111111 11112233455556664433 2332211 25788
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
++|..+-+ ......-++.+..-+|||=...=..+.... ...++.+.|++ +|.. -..+.+.- ..+-
T Consensus 128 VWDtnTlQ---~a~~F~me~~VYshamSp~a~sHcLiA~gt-----r~~~VrLCDi~-SGs~--sH~LsGHr----~~vl 192 (397)
T KOG4283|consen 128 VWDTNTLQ---EAVDFKMEGKVYSHAMSPMAMSHCLIAAGT-----RDVQVRLCDIA-SGSF--SHTLSGHR----DGVL 192 (397)
T ss_pred Eeecccce---eeEEeecCceeehhhcChhhhcceEEEEec-----CCCcEEEEecc-CCcc--eeeecccc----CceE
Confidence 88988766 444445566777788999544211222111 34568999999 8877 44566664 6678
Q ss_pred CceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEe
Q 004735 305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 305 ~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l 340 (732)
.+.|+|... ++++..- .|..+||-+.-.+|-.+.+
T Consensus 193 aV~Wsp~~e~vLatgsa-Dg~irlWDiRrasgcf~~l 228 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSA-DGAIRLWDIRRASGCFRVL 228 (397)
T ss_pred EEEeccCceeEEEecCC-CceEEEEEeecccceeEEe
Confidence 899999988 6665544 6766776555555555444
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.4 Score=47.02 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=57.9
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEE-EcCC-CCcc-ccEEcccC--------CCceeccccCCCCCeEEEEe
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI-ALNG-QNIQ-EPKVLVSG--------SDFYAFPRMDPRGERMAWIE 262 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~-d~~~-~~~~-~~~~lt~~--------~~~~~~p~~SPDG~~la~~~ 262 (732)
..+.+.++| | |+.. ..+|+++ +.++ ++.. ..+.|..+ ......+.|.|||+ |++..
T Consensus 75 ~Gi~~~~~G--l-yV~~---------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~ 141 (367)
T TIGR02604 75 TGLAVAVGG--V-YVAT---------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNH 141 (367)
T ss_pred cceeEecCC--E-EEeC---------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEec
Confidence 556788888 3 3333 1467766 4433 1100 13444322 12244789999996 77654
Q ss_pred ccCCC----CC--------CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEe
Q 004735 263 WHHPN----MP--------WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 319 (732)
Q Consensus 263 ~~~~~----~~--------~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~ 319 (732)
....+ .+ .....++.++.+ +++. .++...- .....++|+++|+++++-+
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd-g~~~---e~~a~G~----rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPD-GGKL---RVVAHGF----QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecC-CCeE---EEEecCc----CCCccceECCCCCEEEEcc
Confidence 32211 01 122468888887 5554 3333333 5567899999998765533
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.84 Score=44.99 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=59.9
Q ss_pred CCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 243 SDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 243 ~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
++.+...+||| +...|+-.+|+. ++.+++++.+|.... +.....+ +-+-...|+.||..+|+..-
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~--------tVR~wevq~~g~~~~-ka~~~~~----~PvL~v~WsddgskVf~g~~- 92 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDG--------TVRIWEVQNSGQLVP-KAQQSHD----GPVLDVCWSDDGSKVFSGGC- 92 (347)
T ss_pred ccchheeEeccccCceEEecccCC--------ceEEEEEecCCcccc-hhhhccC----CCeEEEEEccCCceEEeecc-
Confidence 34566788999 333343445443 377777774465433 2222222 45677899999997776655
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceee
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 354 (732)
.+. +-.+|+.+++..++-..+..+..-.|.+
T Consensus 93 Dk~--~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 93 DKQ--AKLWDLASGQVSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred CCc--eEEEEccCCCeeeeeecccceeEEEEec
Confidence 444 5556899999988876655555556664
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.16 Score=54.51 Aligned_cols=138 Identities=16% Similarity=0.169 Sum_probs=81.2
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HH--------HHHHH------CCCEEE
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SI--------QYWTS------RGWAFV 528 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~--------~~l~~------~G~~v~ 528 (732)
+.+... .+..+.+|+++... .....|+||++-|||+...-..... .. ..|.. +-..++
T Consensus 49 v~v~~~-~~~~LFYwf~eS~~------~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiL 121 (454)
T KOG1282|consen 49 VTVNES-EGRQLFYWFFESEN------NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANIL 121 (454)
T ss_pred EECCCC-CCceEEEEEEEccC------CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEE
Confidence 344433 67889988887754 2445799999999997653322110 00 00111 113577
Q ss_pred EEcCCCCCCCChhhHHhhccC-CC-cccHHHHHHH-HHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CC------
Q 004735 529 DVNYGGSTGYGREFRERLLGR-WG-IVDVNDCCSC-ATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FR------ 595 (732)
Q Consensus 529 ~~d~rG~~g~g~~~~~~~~~~-~~-~~~~~D~~~~-i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p------ 595 (732)
-+|-+-..|+. |....... .+ ....+|...+ .+|+.+.+..-.+.+.|.|-|++|..+-.++. +.
T Consensus 122 fLd~PvGvGFS--Ys~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~ 199 (454)
T KOG1282|consen 122 FLDQPVGVGFS--YSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKP 199 (454)
T ss_pred EEecCCcCCcc--ccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCC
Confidence 77766544433 32221111 11 1224555554 45777777777889999999999976655553 21
Q ss_pred -CcceEEEeecCcCCH
Q 004735 596 -DTFKAGASLYGVADL 610 (732)
Q Consensus 596 -~~~~a~v~~~~~~d~ 610 (732)
--+++.++..|+.|.
T Consensus 200 ~iNLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 200 NINLKGYAIGNGLTDP 215 (454)
T ss_pred cccceEEEecCcccCc
Confidence 257999999998753
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.17 Score=54.72 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=78.7
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-------H--------------HHHHHH
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-------S--------------IQYWTS 522 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-------~--------------~~~l~~ 522 (732)
+.+... .+..+..|++.... .....|+||++-|||+......... . ...|.+
T Consensus 44 ~~v~~~-~~~~lf~~f~es~~------~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~ 116 (437)
T PLN02209 44 IGIGEE-ENVQFFYYFIKSDK------NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK 116 (437)
T ss_pred EEecCC-CCeEEEEEEEecCC------CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh
Confidence 444333 46778878776543 1345799999999987653321100 0 001222
Q ss_pred CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHH-hcCCCCCCcEEEEEcChHHHHHHHHHh----CC--
Q 004735 523 RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV-GSGKADEKRLCITGGSAGGYTTLAALA----FR-- 595 (732)
Q Consensus 523 ~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~-~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p-- 595 (732)
. ..++.+|.+-..|+...-....... ...+.+|+..++.... ..+......+.|.|.|+||..+-.++. ..
T Consensus 117 ~-anllfiDqPvGtGfSy~~~~~~~~~-~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~ 194 (437)
T PLN02209 117 T-ANIIFLDQPVGSGFSYSKTPIERTS-DTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYI 194 (437)
T ss_pred c-CcEEEecCCCCCCccCCCCCCCccC-CHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccc
Confidence 2 4688888665556543211111000 1123455555555333 334455568999999999986655543 21
Q ss_pred -----CcceEEEeecCcCCHH
Q 004735 596 -----DTFKAGASLYGVADLS 611 (732)
Q Consensus 596 -----~~~~a~v~~~~~~d~~ 611 (732)
-.++++++.+|..|..
T Consensus 195 ~~~~~inl~Gi~igng~td~~ 215 (437)
T PLN02209 195 CCNPPINLQGYVLGNPITHIE 215 (437)
T ss_pred ccCCceeeeeEEecCcccChh
Confidence 2478999999988753
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.094 Score=54.86 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=63.2
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCE---EEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~---v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
.++++||. ......+..+...+...|+. +..+++.+..+... .....+.+.+-++.+..... .
T Consensus 61 pivlVhG~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~ql~~~V~~~l~~~g--a 126 (336)
T COG1075 61 PIVLVHGL--GGGYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYS----------LAVRGEQLFAYVDEVLAKTG--A 126 (336)
T ss_pred eEEEEccC--cCCcchhhhhhhhhcchHHHhcccccccccccCCCcc----------ccccHHHHHHHHHHHHhhcC--C
Confidence 68889997 33334444444446666766 77888764411110 11224445555665555533 4
Q ss_pred CcEEEEEcChHHHHHHHHHh-CC--CcceEEEeecCcC
Q 004735 574 KRLCITGGSAGGYTTLAALA-FR--DTFKAGASLYGVA 608 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p--~~~~a~v~~~~~~ 608 (732)
+++.++|||+||.++..++. .+ .+++..+.+++.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 79999999999999998887 55 7888888887653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.32 Score=50.87 Aligned_cols=134 Identities=10% Similarity=0.024 Sum_probs=84.5
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
.|+++...++.....+|.+-+||+.+ ..+. -.....+.....+.+|||-...|+....-+ ..|+++|.
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g--~sp~--~~~~~~HsAP~~gicfspsne~l~vsVG~D--------kki~~yD~ 238 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQG--MSPI--FHASEAHSAPCRGICFSPSNEALLVSVGYD--------KKINIYDI 238 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccC--CCcc--cchhhhccCCcCcceecCCccceEEEeccc--------ceEEEeec
Confidence 35555566666666778889999985 3222 111111123347789999888766654422 58999998
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
...+. ...|+-..- ....+|+|+|.+|+--. -+++|+.+|+. ++...+.+....+ .++..++|
T Consensus 239 ~s~~s--~~~l~y~~P-lstvaf~~~G~~L~aG~--------s~G~~i~YD~R--~~k~Pv~v~sah~----~sVt~vaf 301 (673)
T KOG4378|consen 239 RSQAS--TDRLTYSHP-LSTVAFSECGTYLCAGN--------SKGELIAYDMR--STKAPVAVRSAHD----ASVTRVAF 301 (673)
T ss_pred ccccc--cceeeecCC-cceeeecCCceEEEeec--------CCceEEEEecc--cCCCCceEeeecc----cceeEEEe
Confidence 76542 345553332 24578999999886433 24669999997 3334466666665 66778888
Q ss_pred CCC
Q 004735 309 SSK 311 (732)
Q Consensus 309 spD 311 (732)
-+-
T Consensus 302 q~s 304 (673)
T KOG4378|consen 302 QPS 304 (673)
T ss_pred eec
Confidence 664
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.17 Score=54.71 Aligned_cols=131 Identities=16% Similarity=0.191 Sum_probs=75.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cH--------------------HHHHHHHCCCEEEE
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NL--------------------SIQYWTSRGWAFVD 529 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~--------------------~~~~l~~~G~~v~~ 529 (732)
.+..+..|++...+ .....|+||++-|||+...-... .. ....|.+ -..++.
T Consensus 48 ~~~~lfy~f~es~~------~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~anllf 120 (433)
T PLN03016 48 ENVQFFYYFIKSEN------NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK-MANIIF 120 (433)
T ss_pred CCeEEEEEEEecCC------CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh-cCcEEE
Confidence 46678888886654 23467999999999876432110 00 0011222 257888
Q ss_pred EcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHH-HHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CC-------C
Q 004735 530 VNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA----FR-------D 596 (732)
Q Consensus 530 ~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p-------~ 596 (732)
+|.+-..|+... ......... ...+|+..++. |+...+......+.|.|.|+||..+-.++. .. -
T Consensus 121 iDqPvGtGfSy~--~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~i 198 (433)
T PLN03016 121 LDQPVGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPI 198 (433)
T ss_pred ecCCCCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcc
Confidence 896655555432 111111111 12345555554 333444445678999999999986655543 11 2
Q ss_pred cceEEEeecCcCCH
Q 004735 597 TFKAGASLYGVADL 610 (732)
Q Consensus 597 ~~~a~v~~~~~~d~ 610 (732)
.++++++..|..+.
T Consensus 199 nLkGi~iGNg~t~~ 212 (433)
T PLN03016 199 NLQGYMLGNPVTYM 212 (433)
T ss_pred cceeeEecCCCcCc
Confidence 57899999987654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.5 Score=45.96 Aligned_cols=130 Identities=16% Similarity=0.103 Sum_probs=59.4
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-----CEEEEEeCCC
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-----DTVIFSNYKD 164 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-----~~i~f~~~~~ 164 (732)
.+..++|.|.++++..+. .|++.++. .+ |.....+.... .+. ...+.|...+++++ ..+++.....
T Consensus 3 ~P~~~a~~pdG~l~v~e~----~G~i~~~~--~~-g~~~~~v~~~~-~v~-~~~~~gllgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER----SGRIWVVD--KD-GSLKTPVADLP-EVF-ADGERGLLGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp SEEEEEEETTSCEEEEET----TTEEEEEE--TT-TEECEEEEE-T-TTB-TSTTBSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeC----CceEEEEe--CC-CcCcceecccc-ccc-ccccCCcccceeccccCCCCEEEEEEEcc
Confidence 567889999667877664 46655555 22 11112221111 110 01122344556665 3443332211
Q ss_pred --------CeEEEEeCCCCCC-----CceecC-CCCC-CCCeE-eeceeecCCCCEEEEEEeccCC-----CCCCceeEE
Q 004735 165 --------QRLYKHSIDSKDS-----SPLPIT-PDYG-EPLVS-YADGIFDPRFNRYVTVREDRRQ-----DALNSTTEI 223 (732)
Q Consensus 165 --------~~l~~~d~~~~~~-----~~~~lt-~~~~-~~~~~-~~~~~~spdG~~l~~~~~~~~~-----~~~~~~~~l 223 (732)
..|+++.++. + ..+.|. ..+. ....+ -..+.|.||| +|++...+... ........|
T Consensus 74 ~~~~~~~~~~v~r~~~~~--~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i 150 (331)
T PF07995_consen 74 DEDGGDNDNRVVRFTLSD--GDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI 150 (331)
T ss_dssp -TSSSSEEEEEEEEEEET--TSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred cCCCCCcceeeEEEeccC--CccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence 2677777654 2 122221 1110 00122 2447899999 45555544332 222336788
Q ss_pred EEEEcCCC
Q 004735 224 VAIALNGQ 231 (732)
Q Consensus 224 ~~~d~~~~ 231 (732)
.+++.++.
T Consensus 151 lri~~dG~ 158 (331)
T PF07995_consen 151 LRIDPDGS 158 (331)
T ss_dssp EEEETTSS
T ss_pred EEecccCc
Confidence 88887754
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.11 Score=55.41 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=50.9
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHhC
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 715 (732)
.|+.|+...-|+. .+....++.+|+..|.++.+.++++-.|+|.+- ....+.-+..++-++..|+
T Consensus 788 Pp~~i~ac~mDP~--LDD~vmfA~kLr~lG~~v~l~vle~lPHGFLnft~ls~E~~~~~~~CI~rl~~~L~ 856 (880)
T KOG4388|consen 788 PPVHIVACAMDPM--LDDSVMFARKLRNLGQPVTLRVLEDLPHGFLNFTALSRETRQAAELCIERLRLVLT 856 (880)
T ss_pred CCceEEEeccCcc--hhHHHHHHHHHHhcCCceeehhhhcCCccceeHHhhCHHHHHHHHHHHHHHHHHhC
Confidence 5788999999987 467888999999999999999999999998531 2224455666777777776
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.64 Score=51.88 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=77.5
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
|.+.+|+-+.+...|+.+-+|++.. .++..-+.. ..-+...+++|||+..+.-+- ++....++..
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl----~~lITAvcy~PdGk~avIGt~---------~G~C~fY~t~ 481 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDL----RDLITAVCYSPDGKGAVIGTF---------NGYCRFYDTE 481 (712)
T ss_pred ecccCCCcEeecccccceEEeecCc--CeeEeehhh----hhhheeEEeccCCceEEEEEe---------ccEEEEEEcc
Confidence 4445666666666677777777764 333333332 233466789999997433322 1334444444
Q ss_pred CCCccccEE--cccC----CCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcccc
Q 004735 230 GQNIQEPKV--LVSG----SDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (732)
Q Consensus 230 ~~~~~~~~~--lt~~----~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~ 302 (732)
+-+.+...+ +..+ ...+.+..+.| +-..|..++ +.++|.++|.. +-++ +..+.+.... .+
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--------nDSrIRI~d~~-~~~l--v~KfKG~~n~--~S 548 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS--------NDSRIRIYDGR-DKDL--VHKFKGFRNT--SS 548 (712)
T ss_pred CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec--------CCCceEEEecc-chhh--hhhhcccccC--Cc
Confidence 432000001 1110 11334444443 222566666 35669999875 3333 3334443211 34
Q ss_pred CcCceeCCCCc-EEEEEeccCCeeeEEEE
Q 004735 303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 303 ~~~~~wspDg~-l~~~~~~~~g~~~l~~~ 330 (732)
.....++.||+ |+..+++ .+-.||.+
T Consensus 549 Q~~Asfs~Dgk~IVs~seD--s~VYiW~~ 575 (712)
T KOG0283|consen 549 QISASFSSDGKHIVSASED--SWVYIWKN 575 (712)
T ss_pred ceeeeEccCCCEEEEeecC--ceEEEEeC
Confidence 45678999999 8777644 34344444
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.32 Score=51.64 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcCCCCCccCCcc---cHHHHHHHHCCCEEEEEcCCCCCCCChhhHH------hhccCCCcccHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGIL---NLSIQYWTSRGWAFVDVNYGGSTGYGREFRE------RLLGRWGIVDVNDCCSCA 562 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~---~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~------~~~~~~~~~~~~D~~~~i 562 (732)
....|..|++-|-+.....+.. ..+.+...+.|-.|+....|= ||.+... .++..--.....|+...|
T Consensus 83 ~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~~st~nlk~LSs~QALaDla~fI 159 (514)
T KOG2182|consen 83 KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGDLSTSNLKYLSSLQALADLAEFI 159 (514)
T ss_pred cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCCCcccchhhhhHHHHHHHHHHHH
Confidence 3456999999774222222211 124455556799999999883 3322110 011001112378888888
Q ss_pred HHHHhcCC-CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 563 TFLVGSGK-ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 563 ~~l~~~~~-~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
+.+..+.. -+..+++.+|.|+-|.++.++=. +|+++.++|+-++..
T Consensus 160 ~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 160 KAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred HHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 88877753 34459999999999999999877 999999998887653
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.13 E-value=5.8 Score=41.42 Aligned_cols=194 Identities=11% Similarity=0.086 Sum_probs=97.3
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE---------EcccCCCceeccccCCCCCeEEEEecc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK---------VLVSGSDFYAFPRMDPRGERMAWIEWH 264 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---------~lt~~~~~~~~p~~SPDG~~la~~~~~ 264 (732)
+..+.-|+...|+++.... .++|++|....... +. +|.....--.+..|++.-.-.. ++..
T Consensus 128 nRaRymPQnp~iVAt~t~~--------~dv~Vfd~tk~~s~-~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L-ls~~ 197 (422)
T KOG0264|consen 128 NRARYMPQNPNIVATKTSS--------GDVYVFDYTKHPSK-PKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL-LSGS 197 (422)
T ss_pred hhhhhCCCCCcEEEecCCC--------CCEEEEEeccCCCc-ccccccCCCceEEEeecccccccccccccceeE-eecc
Confidence 5556778777777765543 57888876642200 11 2221111123467888544222 2212
Q ss_pred CCCCCCCccEEEEEEecCCCc----eeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC--eE
Q 004735 265 HPNMPWDKAELWVGYISENGD----VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EV 337 (732)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~~g~----~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g--~~ 337 (732)
+...+.+.|+...+. ......+.+.. ..+..++|.+-.. ++-.... . ..|.++|..++ +.
T Consensus 198 ------~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~----~~VeDV~~h~~h~~lF~sv~d-d--~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 198 ------DDHTICLWDINAESKEDKVVDPKTIFSGHE----DVVEDVAWHPLHEDLFGSVGD-D--GKLMIWDTRSNTSKP 264 (422)
T ss_pred ------CCCcEEEEeccccccCCccccceEEeecCC----cceehhhccccchhhheeecC-C--CeEEEEEcCCCCCCC
Confidence 234478888874333 33445566665 6778899998766 5444333 2 34666777642 22
Q ss_pred EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEE
Q 004735 338 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVE 416 (732)
Q Consensus 338 ~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~ 416 (732)
...... ...+.+. +.|-+ -+..|+.+...++.-.||-+.-=...+..+......|..+ .++...-++.
T Consensus 265 ~~~~~a---h~~~vn~-----~~fnp---~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 265 SHSVKA---HSAEVNC-----VAFNP---FNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred cccccc---cCCceeE-----EEeCC---CCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence 222211 1222222 23322 4556776666666666663321122333444445566666 3444333333
Q ss_pred EeCCC
Q 004735 417 GASGV 421 (732)
Q Consensus 417 ~~~~~ 421 (732)
+++.+
T Consensus 334 SSg~D 338 (422)
T KOG0264|consen 334 SSGTD 338 (422)
T ss_pred ecccC
Confidence 33333
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1 Score=47.31 Aligned_cols=197 Identities=11% Similarity=0.048 Sum_probs=106.3
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE-cccCCCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
.....+|||..-+=+++.... .-+|| +..+-. +.. +..-.+-..+..|-.||+-||.- +..
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~-------rvqly--~~~~~~---~~k~~srFk~~v~s~~fR~DG~LlaaG--D~s---- 89 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSV-------RVQLY--SSVTRS---VRKTFSRFKDVVYSVDFRSDGRLLAAG--DES---- 89 (487)
T ss_pred cceeEecCCCCCCceEEeccc-------EEEEE--ecchhh---hhhhHHhhccceeEEEeecCCeEEEcc--CCc----
Confidence 345667888443223333211 23444 444433 222 33444455667888899966532 443
Q ss_pred CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEE-EecccccccC
Q 004735 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFS 348 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~ 348 (732)
+.+-++|.. +-.+ ++.+.+.. ..+....|+|++. ++...++ ..-..+ +|+++.... .|....--+.
T Consensus 90 --G~V~vfD~k-~r~i--LR~~~ah~----apv~~~~f~~~d~t~l~s~sD-d~v~k~--~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 90 --GHVKVFDMK-SRVI--LRQLYAHQ----APVHVTKFSPQDNTMLVSGSD-DKVVKY--WDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred --CcEEEeccc-cHHH--HHHHhhcc----CceeEEEecccCCeEEEecCC-CceEEE--EEcCCcEEEEEecCCcceeE
Confidence 348888865 3222 34444443 4456778999887 4444433 333333 456665542 2222222233
Q ss_pred CCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEE
Q 004735 349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVA 427 (732)
Q Consensus 349 ~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly 427 (732)
...|++ -+++++++..-||.-+||-....+.....+.. ...|..+ .-+.+.++..++++ .+-
T Consensus 158 ~g~~~~------------~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~pVe~vl~lpsgs~iasAgGn----~vk 220 (487)
T KOG0310|consen 158 CGDISP------------ANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-GCPVESVLALPSGSLIASAGGN----SVK 220 (487)
T ss_pred eecccc------------CCCeEEEecCCCceEEEEEeccCCceeEEecC-CCceeeEEEcCCCCEEEEcCCC----eEE
Confidence 345554 56778888888999889866555433333433 3345555 44555666665543 577
Q ss_pred EEEcCCCc
Q 004735 428 KVTLDDHK 435 (732)
Q Consensus 428 ~~dl~~~~ 435 (732)
++|+-+|.
T Consensus 221 VWDl~~G~ 228 (487)
T KOG0310|consen 221 VWDLTTGG 228 (487)
T ss_pred EEEecCCc
Confidence 88887543
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=94.04 E-value=12 Score=41.41 Aligned_cols=211 Identities=10% Similarity=-0.024 Sum_probs=94.3
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC---
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG--- 242 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~--- 242 (732)
++|++|+.+ ..-+.+......+..+....+..--++.|+.+...... ...+++|++|+.+.++ +++...
T Consensus 194 ~v~~yD~~~--~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~---~~~ndv~~yD~~t~~W---~~l~~~~~~ 265 (470)
T PLN02193 194 HLYVFDLET--RTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS---RQYNGFYSFDTTTNEW---KLLTPVEEG 265 (470)
T ss_pred cEEEEECCC--CEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC---CCCccEEEEECCCCEE---EEcCcCCCC
Confidence 699999986 54444432110111111111111123444444332211 1246899999998774 333221
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc-
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK- 321 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~- 321 (732)
+...........+.+|+......... ...+++++|+. +.+...+......... .. ....-.-++++|+.....
T Consensus 266 P~~R~~h~~~~~~~~iYv~GG~~~~~--~~~~~~~yd~~-t~~W~~~~~~~~~~~~--R~-~~~~~~~~gkiyviGG~~g 339 (470)
T PLN02193 266 PTPRSFHSMAADEENVYVFGGVSATA--RLKTLDSYNIV-DKKWFHCSTPGDSFSI--RG-GAGLEVVQGKVWVVYGFNG 339 (470)
T ss_pred CCCccceEEEEECCEEEEECCCCCCC--CcceEEEEECC-CCEEEeCCCCCCCCCC--CC-CcEEEEECCcEEEEECCCC
Confidence 11111111122344565544222111 23568888887 5544222110000000 00 111122356665554321
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC---------C--EEEEEEEECCC
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN---------G--RSYLGILDDFG 390 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~---------g--~~~ly~~~~~~ 390 (732)
.....++++|+++.+.+.+.... ....+... ...... +++.+++.-... + ...+|.+|+.+
T Consensus 340 ~~~~dv~~yD~~t~~W~~~~~~g-~~P~~R~~---~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 340 CEVDDVHYYDPVQDKWTQVETFG-VRPSERSV---FASAAV----GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred CccCceEEEECCCCEEEEeccCC-CCCCCcce---eEEEEE----CCEEEEECCccCCccccccCccceeccEEEEEcCc
Confidence 11356899999999888775321 00011111 111222 444333333211 1 13589999999
Q ss_pred CceEEecc
Q 004735 391 HSLSLLDI 398 (732)
Q Consensus 391 ~~~~~lt~ 398 (732)
.+++.+..
T Consensus 412 ~~W~~~~~ 419 (470)
T PLN02193 412 LQWERLDK 419 (470)
T ss_pred CEEEEccc
Confidence 99988763
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=94.04 E-value=9.8 Score=40.50 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=51.2
Q ss_pred cccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeE
Q 004735 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNL 327 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l 327 (732)
..|.|-| .||.-. .....+++|.+ +... +.+-.+ . ..+.-++++|||. |++-+. .+...|
T Consensus 413 ~~fhpsg-~va~Gt--------~~G~w~V~d~e-~~~l--v~~~~d-~----~~ls~v~ysp~G~~lAvgs~--d~~iyi 473 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGT--------ATGRWFVLDTE-TQDL--VTIHTD-N----EQLSVVRYSPDGAFLAVGSH--DNHIYI 473 (626)
T ss_pred eeccCcc-eEEEee--------ccceEEEEecc-ccee--EEEEec-C----CceEEEEEcCCCCEEEEecC--CCeEEE
Confidence 3466777 555432 23457888887 4333 232233 2 4467789999999 554443 477788
Q ss_pred EEEeccCCeEEEecccc-cccCCCceee
Q 004735 328 HKWIESNNEVLAIYSLD-AEFSRPLWVF 354 (732)
Q Consensus 328 ~~~d~~~g~~~~l~~~~-~~~~~~~w~~ 354 (732)
|+++.++.+..++-.-. .-.....|+.
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecC
Confidence 99987776655543211 3344556765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.96 E-value=17 Score=43.10 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=40.7
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEec
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW 263 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~ 263 (732)
..-.+.|--|+..|.++.. .++|.++|+.+.. ...+..-...+...+||||++.++++..
T Consensus 70 ~i~s~~fl~d~~~i~v~~~---------~G~iilvd~et~~---~eivg~vd~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITA---------LGDIILVDPETLE---LEIVGNVDNGISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEEEecccceEEEEec---------CCcEEEEcccccc---eeeeeeccCceEEEeecCCCcEEEEEeC
Confidence 4455567778887655544 2567777877765 4444444445667899999999999873
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.82 E-value=4.3 Score=41.46 Aligned_cols=228 Identities=11% Similarity=0.079 Sum_probs=113.0
Q ss_pred EEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceee-cCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF-DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
+++...++.+-++|+.+ ....++... .......+| .++...-.|+..... . .-.||.++..... .
T Consensus 118 IltgsYDg~~riWd~~G--k~~~~~~Gh----t~~ik~v~~v~~n~~~~~fvsas~D-q----tl~Lw~~~~~~~~---~ 183 (423)
T KOG0313|consen 118 ILTGSYDGTSRIWDLKG--KSIKTIVGH----TGPIKSVAWVIKNSSSCLFVSASMD-Q----TLRLWKWNVGENK---V 183 (423)
T ss_pred EEEeecCCeeEEEecCC--ceEEEEecC----CcceeeeEEEecCCccceEEEecCC-c----eEEEEEecCchhh---h
Confidence 44555677788889885 555566654 233333333 333331123222111 0 3567777765443 2
Q ss_pred EEcc--cC-CCceeccccCCCCCeEEEEeccCCCCCCCccEEEE--EEecC------------------CCceeeeEEec
Q 004735 237 KVLV--SG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV--GYISE------------------NGDVYKRVCVA 293 (732)
Q Consensus 237 ~~lt--~~-~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v--~d~~~------------------~g~~~~~~~~~ 293 (732)
..+. .| ...+...+..+||.+++-.+||..- .||- .+... .|+-..+..+.
T Consensus 184 ~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l------kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 184 KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML------KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred hHHhHhcccccceeEEEecCCCCeEEeeccccee------eecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 2222 12 2344556778999988777765532 1222 11110 11111233444
Q ss_pred CCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEE
Q 004735 294 GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 372 (732)
Q Consensus 294 ~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~ 372 (732)
+.- ..+..+.|++. ..+|.... ...|-++|+.+|... .++.. ..+......+ ..+ |+
T Consensus 258 GHt----~~Vs~V~w~d~-~v~yS~Sw---DHTIk~WDletg~~~~~~~~~-ksl~~i~~~~------------~~~-Ll 315 (423)
T KOG0313|consen 258 GHT----EPVSSVVWSDA-TVIYSVSW---DHTIKVWDLETGGLKSTLTTN-KSLNCISYSP------------LSK-LL 315 (423)
T ss_pred ccc----cceeeEEEcCC-CceEeecc---cceEEEEEeecccceeeeecC-cceeEeeccc------------ccc-ee
Confidence 443 66788899874 34444433 246888898886543 33322 1111111111 223 44
Q ss_pred EEEEECCEEEEEEEECCCCc--e--EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEE
Q 004735 373 CSYRQNGRSYLGILDDFGHS--L--SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKV 429 (732)
Q Consensus 373 ~~s~~~g~~~ly~~~~~~~~--~--~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~ 429 (732)
.+...+ .+|-++|+.++. + .++......|..+ ..+.+.+.|...+-++...+|-+
T Consensus 316 ~~gssd--r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 316 ASGSSD--RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred eecCCC--CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 443333 456666876653 2 3455555667777 45555666666666555444443
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.81 E-value=3.8 Score=47.88 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=64.2
Q ss_pred CceeCCCCc--EEEEEeccCC-eeeEEEEeccCC-eEEEecccccccCC-CceeecccceeeeeecCCCCEEEEEEEE--
Q 004735 305 EPKWSSKGE--LFFVTDRKNG-FWNLHKWIESNN-EVLAIYSLDAEFSR-PLWVFGINSYEIIQSHGEKNLIACSYRQ-- 377 (732)
Q Consensus 305 ~~~wspDg~--l~~~~~~~~g-~~~l~~~d~~~g-~~~~l~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~l~~~s~~-- 377 (732)
.+.++.|+. +++.... .+ ..++..+...++ ..+.++.+.+++.. ..|. . +.+.++|.+..
T Consensus 344 ~~~~~~d~~~~~~~~~~~-~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~---------~---~~~~i~f~~~~~~ 410 (755)
T KOG2100|consen 344 EPVFSSDGSSYLKVDSVS-DGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYD---------K---DSNRIYFDAYEED 410 (755)
T ss_pred cceEeecCCceeEEEeec-cCCEEEEEEEEcCCCCccccccccceEEEEecccc---------C---CCceEEEEecCCC
Confidence 467888875 4444444 44 677777766666 55556544433321 1111 1 66788888765
Q ss_pred CCEEEEEEEECCCCceEEeccCCC----ceEEee--EeCCEEEEEEeCCCCC
Q 004735 378 NGRSYLGILDDFGHSLSLLDIPFT----DIDNIT--LGNDCLFVEGASGVEP 423 (732)
Q Consensus 378 ~g~~~ly~~~~~~~~~~~lt~~~~----~v~~~~--~~~~~~~~~~~~~~~~ 423 (732)
.+..+||.+++.+...+.+|.... .+-+++ ...+.++..+..+..|
T Consensus 411 ~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p 462 (755)
T KOG2100|consen 411 PSERHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVP 462 (755)
T ss_pred CCceEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEEccCCCCC
Confidence 578999999999988877876543 233332 2234555566666655
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.73 E-value=9.8 Score=39.70 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=68.3
Q ss_pred ECCEEEEEeCCC------CeEEEEeCCCCCCCceecC-CCCC----------CCCeEeeceeecCCCCEEEEEEeccCCC
Q 004735 153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPIT-PDYG----------EPLVSYADGIFDPRFNRYVTVREDRRQD 215 (732)
Q Consensus 153 ~~~~i~f~~~~~------~~l~~~d~~~~~~~~~~lt-~~~~----------~~~~~~~~~~~spdG~~l~~~~~~~~~~ 215 (732)
.++.++++.+.. ..|+.++.++ ...+.+. +..- ....-+-..+++|||+.|+.+.+..-..
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~G--~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLDG--RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCCC--cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccC
Confidence 566788888888 7999999884 3334332 1100 0111234578999999877776654211
Q ss_pred C-------CCceeEEEEEEcCC-CCccccEEcc---c------CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEE
Q 004735 216 A-------LNSTTEIVAIALNG-QNIQEPKVLV---S------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG 278 (732)
Q Consensus 216 ~-------~~~~~~l~~~d~~~-~~~~~~~~lt---~------~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~ 278 (732)
+ ......|+.+|..+ +.. ..+.. . .........+-|||+.| .+..+....-....+||.+
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~~~y~ld~~~~~~~~~~isd~~al~d~~lL-vLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEP--VAEYAYPLDPPPTAPGDNGISDIAALPDGRLL-VLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCcc--ceEEEEeCCccccccCCCCceeEEEECCCcEE-EEEccCCCCccceEEEEEE
Confidence 1 11136788888875 320 12211 1 12223445677888844 4542321111135678888
Q ss_pred Eec
Q 004735 279 YIS 281 (732)
Q Consensus 279 d~~ 281 (732)
++.
T Consensus 249 ~l~ 251 (326)
T PF13449_consen 249 DLS 251 (326)
T ss_pred Ecc
Confidence 876
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=93.52 E-value=4.3 Score=44.75 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=88.1
Q ss_pred cccCCCceeccccCCCCCeEEEEeccCCCCCC---CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 239 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW---DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 239 lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~---~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
+....+.+.+..|+|+|..|.-.+.|..-+-| .++-||+-.+. -|+.. +.. .+.....|+|++..+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR-lGe~g------g~a----~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR-LGEVG------GSA----GGFWGGLWSPNSNVI 331 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE-eeccc------ccc----cceeeEEEcCCCCEE
Confidence 44556788889999999878766655543323 23345665544 33331 222 456678899999854
Q ss_pred EEEeccCCeeeEEEEeccCCeEEEe--cc-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 316 FVTDRKNGFWNLHKWIESNNEVLAI--YS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~~~l--~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
....+ .|.+++|. +-+.....+. +. .-..+.+..|.+ .|. ++.+...|...+|+.---...+
T Consensus 332 i~~g~-~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~p------------sGe-flLsvs~DQTTRlFa~wg~q~~ 396 (764)
T KOG1063|consen 332 IAHGR-TGGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDP------------SGE-FLLSVSLDQTTRLFARWGRQQE 396 (764)
T ss_pred EEecc-cCcEEEEe-ccCccceeeccccccccccceeeeecC------------CCC-EEEEeccccceeeecccccccc
Confidence 45555 78899998 3333333322 22 223445566664 555 5555555666666643311223
Q ss_pred eEEeccCC---CceEEeeEeCCEEEEEEeCCCCCcEEEE
Q 004735 393 LSLLDIPF---TDIDNITLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 393 ~~~lt~~~---~~v~~~~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
+..+..|+ .++..+..=++.+.|+++......++|.
T Consensus 397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred eeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 45565553 2344442112245555555544444443
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.25 Score=39.95 Aligned_cols=66 Identities=17% Similarity=0.077 Sum_probs=44.0
Q ss_pred ceeecCCCCEEEEEEeccCCC---------CCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEec
Q 004735 195 DGIFDPRFNRYVTVREDRRQD---------ALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW 263 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~~---------~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~ 263 (732)
+..+++++..|+|+.....-. ......+|+.+|+.+++ .+.|..+-.+.++.+.|||++.|++...
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE---EEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe---EEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 456777755566664432211 01235899999999998 8888888888899999999999988773
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=3.3 Score=40.75 Aligned_cols=111 Identities=12% Similarity=0.197 Sum_probs=68.1
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC----CCceeccccCC--CCCeEEEEeccC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG----SDFYAFPRMDP--RGERMAWIEWHH 265 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~----~~~~~~p~~SP--DG~~la~~~~~~ 265 (732)
+..-..|-|++.+++...+ ++|.+++++.+.......+..+ .....+-+||| ||..++-++
T Consensus 125 ~i~cvew~Pns~klasm~d----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--- 191 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--- 191 (370)
T ss_pred ceeeEEEcCCCCeeEEecc----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC---
Confidence 4456779999999888764 5788888887651101112211 22334578999 999988765
Q ss_pred CCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEE
Q 004735 266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH 328 (732)
Q Consensus 266 ~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~ 328 (732)
.+.|+.+|+. +-+ +...+.+.. . ..+..+.+.|+-+ ++.+..+ .|+-+||
T Consensus 192 ------d~tl~~~D~R-T~~--~~~sI~dAH-g--q~vrdlDfNpnkq~~lvt~gD-dgyvriW 242 (370)
T KOG1007|consen 192 ------DSTLQFWDLR-TMK--KNNSIEDAH-G--QRVRDLDFNPNKQHILVTCGD-DGYVRIW 242 (370)
T ss_pred ------CCcEEEEEcc-chh--hhcchhhhh-c--ceeeeccCCCCceEEEEEcCC-CccEEEE
Confidence 3448888886 321 112222221 1 3456778889877 6666665 6776666
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=93.31 E-value=3.4 Score=42.12 Aligned_cols=127 Identities=11% Similarity=0.105 Sum_probs=68.7
Q ss_pred eEeeceeecCCC----CEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC--------------------Cce
Q 004735 191 VSYADGIFDPRF----NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--------------------DFY 246 (732)
Q Consensus 191 ~~~~~~~~spdG----~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~--------------------~~~ 246 (732)
..+.++++.... +..+|+.+... ..|.++|+.+++ ..++..+. +..
T Consensus 61 s~lndl~VD~~~~~~~~~~aYItD~~~-------~glIV~dl~~~~---s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~ 130 (287)
T PF03022_consen 61 SFLNDLVVDVRDGNCDDGFAYITDSGG-------PGLIVYDLATGK---SWRVLHNSFSPDPDAGPFTIGGESFQWPDGI 130 (287)
T ss_dssp GGEEEEEEECTTTTS-SEEEEEEETTT-------CEEEEEETTTTE---EEEEETCGCTTS-SSEEEEETTEEEEETTSE
T ss_pred cccceEEEEccCCCCcceEEEEeCCCc-------CcEEEEEccCCc---EEEEecCCcceeccccceeccCceEecCCCc
Confidence 445666665522 25688877542 589999999988 56654321 001
Q ss_pred eccc---cCCCCCeEEEEeccCCCCCCCccEEEEEEec--CCCcee-------eeEEecCCCCCccccCcCceeCCCCcE
Q 004735 247 AFPR---MDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDVY-------KRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 247 ~~p~---~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~--~~g~~~-------~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
.+.+ .+|||++|+|.... ...+|.++.+ .+.... .++.+.... ........+++|.|
T Consensus 131 ~gial~~~~~d~r~LYf~~ls-------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~----~~s~g~~~D~~G~l 199 (287)
T PF03022_consen 131 FGIALSPISPDGRWLYFHPLS-------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG----SQSDGMAIDPNGNL 199 (287)
T ss_dssp EEEEE-TTSTTS-EEEEEETT--------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-------SECEEEEETTTEE
T ss_pred cccccCCCCCCccEEEEEeCC-------CCcEEEEEHHHhhCccccccccccccceeccccC----CCCceEEECCCCcE
Confidence 1122 36699999998732 3447877654 122111 112222111 12235667777767
Q ss_pred EEEEeccCCeeeEEEEeccC----CeEEEec
Q 004735 315 FFVTDRKNGFWNLHKWIESN----NEVLAIY 341 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~----g~~~~l~ 341 (732)
||..- ....|+++++.+ .+.+.|.
T Consensus 200 y~~~~---~~~aI~~w~~~~~~~~~~~~~l~ 227 (287)
T PF03022_consen 200 YFTDV---EQNAIGCWDPDGPYTPENFEILA 227 (287)
T ss_dssp EEEEC---CCTEEEEEETTTSB-GCCEEEEE
T ss_pred EEecC---CCCeEEEEeCCCCcCccchheeE
Confidence 66543 345689999876 3444454
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.3 Score=52.33 Aligned_cols=82 Identities=12% Similarity=0.024 Sum_probs=55.6
Q ss_pred cccHHHHHHHHCCCE----EEE--EcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHH
Q 004735 512 ILNLSIQYWTSRGWA----FVD--VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG 585 (732)
Q Consensus 512 ~~~~~~~~l~~~G~~----v~~--~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG 585 (732)
.|..+++.|.+.||. +++ .|.|-+..... .-...+...|+.+.+.. ..+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~~~~------------~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPAERD------------EYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchhhHH------------HHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence 567788999998874 232 56664332000 11345666666665542 6799999999999
Q ss_pred HHHHHHHh-CC------CcceEEEeecCcC
Q 004735 586 YTTLAALA-FR------DTFKAGASLYGVA 608 (732)
Q Consensus 586 ~~a~~~~~-~p------~~~~a~v~~~~~~ 608 (732)
.++..++. .+ +.++..|.+++..
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCCC
Confidence 99999887 42 2588888887754
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.29 E-value=9.2 Score=42.23 Aligned_cols=70 Identities=13% Similarity=0.005 Sum_probs=48.6
Q ss_pred CCCEEEEEEEECC--EEEEEEEECC-CCceEEeccCCCceE-EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 367 EKNLIACSYRQNG--RSYLGILDDF-GHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 367 ~~~~l~~~s~~~g--~~~ly~~~~~-~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..+.+||...+++ ..|||++... .|+..+||.+..... .++..-+.++...++...|+.+-++.+.+++.
T Consensus 514 ~~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~ 587 (867)
T KOG2281|consen 514 VRKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEN 587 (867)
T ss_pred cceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCcc
Confidence 4567889988876 4789999988 889999998644322 23333344667777888888866666665543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.7 Score=47.31 Aligned_cols=58 Identities=5% Similarity=0.017 Sum_probs=42.7
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEE
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~ 318 (732)
....+||||+..|.+.+.+. .++++|+. .|.+ ...+.+.+ .++..++|.|-++ +.-.+
T Consensus 126 iydL~Ws~d~~~l~s~s~dn--------s~~l~Dv~-~G~l--~~~~~dh~----~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGSVDN--------SVRLWDVH-AGQL--LAILDDHE----HYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hhhhhccCCCceeeeeeccc--------eEEEEEec-ccee--Eeeccccc----cccceeecchhhhhhhhhc
Confidence 45689999999998877443 47888888 6765 55556655 8899999999887 44333
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=93.15 E-value=17 Score=40.62 Aligned_cols=132 Identities=10% Similarity=-0.013 Sum_probs=70.0
Q ss_pred CeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 165 QRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
+-+-++|.++ -+. .++.-+ .+.....++|||++++..+-+.... ..+..++..... . .+.-+.
T Consensus 215 ~~vSvID~et--meV~~qV~Vd-----gnpd~v~~spdGk~afvTsyNsE~G-----~tl~em~a~e~d---~-~vvfni 278 (635)
T PRK02888 215 SLFTAVDAET--MEVAWQVMVD-----GNLDNVDTDYDGKYAFSTCYNSEEG-----VTLAEMMAAERD---W-VVVFNI 278 (635)
T ss_pred EEEEEEECcc--ceEEEEEEeC-----CCcccceECCCCCEEEEeccCcccC-----cceeeeccccCc---e-EEEEch
Confidence 4566777765 222 233322 1224456999999865554322111 355555553322 1 111111
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC----C-ceeeeEEecCCCCCccccCcCceeCCCCcEEEEE
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN----G-DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~ 318 (732)
. ...++.+||++.. +. ...+-++|.. + + ++ ...++-. .++..+..||||+.++++
T Consensus 279 ~--~iea~vkdGK~~~-V~---------gn~V~VID~~-t~~~~~~~v--~~yIPVG-----KsPHGV~vSPDGkylyVa 338 (635)
T PRK02888 279 A--RIEEAVKAGKFKT-IG---------GSKVPVVDGR-KAANAGSAL--TRYVPVP-----KNPHGVNTSPDGKYFIAN 338 (635)
T ss_pred H--HHHHhhhCCCEEE-EC---------CCEEEEEECC-ccccCCcce--EEEEECC-----CCccceEECCCCCEEEEe
Confidence 0 1236788999654 42 3458888876 4 2 22 2333332 456789999999955555
Q ss_pred eccCCeeeEEEEeccC
Q 004735 319 DRKNGFWNLHKWIESN 334 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~ 334 (732)
+. ....+-++|.++
T Consensus 339 nk--lS~tVSVIDv~k 352 (635)
T PRK02888 339 GK--LSPTVTVIDVRK 352 (635)
T ss_pred CC--CCCcEEEEEChh
Confidence 54 233455667655
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=5.4 Score=44.97 Aligned_cols=192 Identities=6% Similarity=-0.102 Sum_probs=95.4
Q ss_pred eeEEEEEEcCCCCccccEEcccCCCceecc-ccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCC
Q 004735 220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 298 (732)
Q Consensus 220 ~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p-~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~ 298 (732)
..+++.+|+.+++ -..+..-....... ..+-+| +|+.+....... ....++++|.. +++.+....++..
T Consensus 310 ~~~v~~yd~~~~~---W~~~~~~~~~R~~~~~~~~~~-~lyv~GG~~~~~--~~~~v~~yd~~-~~~W~~~~~lp~~--- 379 (534)
T PHA03098 310 VNSVVSYDTKTKS---WNKVPELIYPRKNPGVTVFNN-RIYVIGGIYNSI--SLNTVESWKPG-ESKWREEPPLIFP--- 379 (534)
T ss_pred eccEEEEeCCCCe---eeECCCCCcccccceEEEECC-EEEEEeCCCCCE--ecceEEEEcCC-CCceeeCCCcCcC---
Confidence 3578999998877 34443222111111 112244 465554322111 23458888887 5554322212111
Q ss_pred ccccCcCceeCCCCcEEEEEeccCC---eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEE
Q 004735 299 IVESPTEPKWSSKGELFFVTDRKNG---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 375 (732)
Q Consensus 299 ~~~~~~~~~wspDg~l~~~~~~~~g---~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s 375 (732)
..... .-.-+|++|.......+ ...++++|+.+++.+.+.+... +... ..... -++.||+..
T Consensus 380 --r~~~~-~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~----~r~~---~~~~~-----~~~~iyv~G 444 (534)
T PHA03098 380 --RYNPC-VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI----SHYG---GCAIY-----HDGKIYVIG 444 (534)
T ss_pred --Cccce-EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc----cccC---ceEEE-----ECCEEEEEC
Confidence 11111 12235666665432111 2468899999988877653221 1110 01111 234555543
Q ss_pred EEC------CEEEEEEEECCCCceEEeccCCCc--eEEeeEeCCEEEEEEeCCCC--CcEEEEEEcCCCcc
Q 004735 376 RQN------GRSYLGILDDFGHSLSLLDIPFTD--IDNITLGNDCLFVEGASGVE--PSSVAKVTLDDHKL 436 (732)
Q Consensus 376 ~~~------g~~~ly~~~~~~~~~~~lt~~~~~--v~~~~~~~~~~~~~~~~~~~--~~~ly~~dl~~~~~ 436 (732)
... ....++++|+.+++++.+...... ...+..-+++++++++.... ...++.+|+++++.
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 221 134599999999999887642211 11122336677766653322 24588888887764
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=93.02 E-value=11 Score=39.67 Aligned_cols=152 Identities=11% Similarity=0.069 Sum_probs=68.7
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeecee--ecCCCCEE--EEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGI--FDPRFNRY--VTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~--~spdG~~l--~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
+++...+.+.|+++|+++ ...+.+..+ ...--|.. |.-.|+.+ +.++++..+.. .-.||.+|.+++.
T Consensus 70 lIigTdK~~GL~VYdL~G--k~lq~~~~G----r~NNVDvrygf~l~g~~vDlavas~R~~g~n---~l~~f~id~~~g~ 140 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDG--KELQSLPVG----RPNNVDVRYGFPLNGKTVDLAVASDRSDGRN---SLRLFRIDPDTGE 140 (381)
T ss_dssp EEEEEETTTEEEEEETTS---EEEEE-SS-----EEEEEEEEEEEETTEEEEEEEEEE-CCCT----EEEEEEEETTTTE
T ss_pred eEEEEeCCCCEEEEcCCC--cEEEeecCC----CcceeeeecceecCCceEEEEEEecCcCCCC---eEEEEEecCCCCc
Confidence 445555667899999996 666666543 11111211 22356664 34444321111 2578999987776
Q ss_pred ccccEEcccCC-------Cceecccc--CC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCce--eeeEEecCCCCCcc
Q 004735 233 IQEPKVLVSGS-------DFYAFPRM--DP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDV--YKRVCVAGFDPTIV 300 (732)
Q Consensus 233 ~~~~~~lt~~~-------~~~~~p~~--SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~--~~~~~~~~~~~~~~ 300 (732)
.+.++... .-..+.++ || +|+.-+|+...+ + ..+.|.+..+.+|.+ +.++.+.-.
T Consensus 141 ---L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~-G----~~~Qy~L~~~~~g~v~~~lVR~f~~~----- 207 (381)
T PF02333_consen 141 ---LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKD-G----RVEQYELTDDGDGKVSATLVREFKVG----- 207 (381)
T ss_dssp ---EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETT-S----EEEEEEEEE-TTSSEEEEEEEEEE-S-----
T ss_pred ---ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCC-c----eEEEEEEEeCCCCcEeeEEEEEecCC-----
Confidence 66655321 11223443 54 677777776333 2 233344433324543 223333322
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEecc
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~ 333 (732)
..+....-...-..+|......| ||+++.+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~G---IW~y~Ae 237 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDVG---IWRYDAE 237 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTTE---EEEEESS
T ss_pred CcceEEEEecccCCEEEecCccE---EEEEecC
Confidence 11233344333225555555233 6666554
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.1 Score=49.49 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCCCCCChh-hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 524 GWAFVDVNYGGSTGYGRE-FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 524 G~~v~~~d~rG~~g~g~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
-..|++|-||-.+-+... .............+.|+.+|.++.+++.. +...++|+|||.|+.+...++.
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~ 114 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLK 114 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHH
Confidence 368999999854322111 00000111122348999999998888743 3468999999999999999987
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=92.86 E-value=18 Score=40.10 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=82.3
Q ss_pred ceeecCCCCEEEEEEeccCC---------CCCCceeEEEEEEcCCCCccccEEcccCC----CceeccccC----CCCC-
Q 004735 195 DGIFDPRFNRYVTVREDRRQ---------DALNSTTEIVAIALNGQNIQEPKVLVSGS----DFYAFPRMD----PRGE- 256 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~---------~~~~~~~~l~~~d~~~~~~~~~~~lt~~~----~~~~~p~~S----PDG~- 256 (732)
.+.+++.+..|++-..+... .+......|+.+|+++|+.....++.... .....|.+. =||+
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 35566666765554432210 01112358999999999821112222111 111223322 1343
Q ss_pred -eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEec--------------c
Q 004735 257 -RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR--------------K 321 (732)
Q Consensus 257 -~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~--------------~ 321 (732)
.++|+.. ....|+.+|.. +|+..+....... .+..+| +.+|+.... .
T Consensus 301 ~~~V~~g~-------~~G~l~ald~~-tG~~~W~~~~~~~---------~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~ 362 (488)
T cd00216 301 VPAIVHAP-------KNGFFYVLDRT-TGKLISARPEVEQ---------PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKK 362 (488)
T ss_pred eEEEEEEC-------CCceEEEEECC-CCcEeeEeEeecc---------ccccCC-ceEEEccccccccCcccccCCCCC
Confidence 3455542 13459999998 8887554433211 233344 335543211 0
Q ss_pred CCeeeEEEEeccCCeEEEeccccc-----ccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDA-----EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
.....|+.+|+.+|+..--.+... ....+.+. ..... .++.+|+.+ .+| +||.+|.++|++.
T Consensus 363 ~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~---~~~~~-----~g~~v~~g~-~dG--~l~ald~~tG~~l 429 (488)
T cd00216 363 PGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG---GSLAT-----AGNLVFAGA-ADG--YFRAFDATTGKEL 429 (488)
T ss_pred CCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC---cceEe-----cCCeEEEEC-CCC--eEEEEECCCCcee
Confidence 123468899999887542221110 00011111 01111 456666654 343 6899999998754
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=2.7 Score=47.29 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=39.2
Q ss_pred CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEE
Q 004735 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
+...|.++|+. +-++ ++.+.+.. ..+..+.+||||+ |+..+.+ + .|..+|+.++....
T Consensus 554 ddf~I~vvD~~-t~kv--vR~f~gh~----nritd~~FS~DgrWlisasmD--~--tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 554 DDFSIRVVDVV-TRKV--VREFWGHG----NRITDMTFSPDGRWLISASMD--S--TIRTWDLPTGTLID 612 (910)
T ss_pred CceeEEEEEch-hhhh--hHHhhccc----cceeeeEeCCCCcEEEEeecC--C--cEEEEeccCcceee
Confidence 34568888876 4444 55566654 5678999999999 6544443 3 46677888876543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.43 Score=48.06 Aligned_cols=153 Identities=10% Similarity=0.031 Sum_probs=86.9
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
....|+|--..|+.++..+ ..|+++|+..+.. .+.+.- .-..+..+|+| . -.-|+..++. .
T Consensus 191 ~svkfNpvETsILas~~sD--------rsIvLyD~R~~~P--l~KVi~-~mRTN~IswnP-e-afnF~~a~ED------~ 251 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASD--------RSIVLYDLRQASP--LKKVIL-TMRTNTICWNP-E-AFNFVAANED------H 251 (433)
T ss_pred eEEecCCCcchheeeeccC--------CceEEEecccCCc--cceeee-eccccceecCc-c-ccceeecccc------c
Confidence 4456778777777766433 5899999987761 222221 12345689999 3 3456664553 2
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEec--ccccccCCC
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRP 350 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~ 350 (732)
.||.+|+..-.+ .+.+..+.. ..+-++.+||-|+ ++-.+-+ .. |-++....+..|.+. .-...+...
T Consensus 252 nlY~~DmR~l~~--p~~v~~dhv----sAV~dVdfsptG~EfvsgsyD--ks--IRIf~~~~~~SRdiYhtkRMq~V~~V 321 (433)
T KOG0268|consen 252 NLYTYDMRNLSR--PLNVHKDHV----SAVMDVDFSPTGQEFVSGSYD--KS--IRIFPVNHGHSRDIYHTKRMQHVFCV 321 (433)
T ss_pred cceehhhhhhcc--cchhhcccc----eeEEEeccCCCcchhcccccc--ce--EEEeecCCCcchhhhhHhhhheeeEE
Confidence 389998762111 233334433 4566888999999 5533322 33 444455556555554 222233344
Q ss_pred ceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
.|+. |. .++++...++.-+||.-..
T Consensus 322 k~S~------------Ds-kyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 322 KYSM------------DS-KYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEec------------cc-cEEEecCCCcceeeeecch
Confidence 5663 44 4555666677788887543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.1 Score=46.04 Aligned_cols=143 Identities=12% Similarity=0.071 Sum_probs=76.7
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 325 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~ 325 (732)
.-.++++||+.|+-.. ....|.++++. +-.. +....... ..+.++.|||||+ |+.++.. ..
T Consensus 148 k~vaf~~~gs~latgg--------~dg~lRv~~~P-s~~t--~l~e~~~~----~eV~DL~FS~dgk~lasig~d---~~ 209 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG--------TDGTLRVWEWP-SMLT--ILEEIAHH----AEVKDLDFSPDGKFLASIGAD---SA 209 (398)
T ss_pred eEEEEcCCCCEeeecc--------ccceEEEEecC-cchh--hhhhHhhc----CccccceeCCCCcEEEEecCC---ce
Confidence 3467899999887654 23447777754 2111 11112222 5678999999999 6655432 33
Q ss_pred eEEEEeccCC-eEEEecccccccCCCceeecccceeeeeecCCC---CEEEEEE-EECCEEEEEEEECCCC----ceEEe
Q 004735 326 NLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEK---NLIACSY-RQNGRSYLGILDDFGH----SLSLL 396 (732)
Q Consensus 326 ~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~l~~~s-~~~g~~~ly~~~~~~~----~~~~l 396 (732)
.+ ++.++| .+...++. ...|.. ....|.. ++ ..+++.. .+.+...++.+.+..+ +.++.
T Consensus 210 ~V--W~~~~g~~~a~~t~~-----~k~~~~--~~cRF~~---d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~ 277 (398)
T KOG0771|consen 210 RV--WSVNTGAALARKTPF-----SKDEMF--SSCRFSV---DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK 277 (398)
T ss_pred EE--EEeccCchhhhcCCc-----ccchhh--hhceecc---cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh
Confidence 44 455555 23333322 112221 1223332 22 2233333 2334445555555444 55566
Q ss_pred ccCCCceEEe-eEeCCEEEEEEeC
Q 004735 397 DIPFTDIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 397 t~~~~~v~~~-~~~~~~~~~~~~~ 419 (732)
...+..++.+ ++++++++.+++.
T Consensus 278 ~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 278 IKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hhccCcceeEEEcCCCcEEEEecc
Confidence 6667788888 6778888888775
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=11 Score=42.67 Aligned_cols=237 Identities=8% Similarity=-0.063 Sum_probs=117.1
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
.++.+|+.+ +.-..+++-+.. ...+. ...-+ +.|+.+...... ......++.+|+.++.+ ..+..-...
T Consensus 273 ~v~~yd~~~--~~W~~l~~mp~~-r~~~~--~a~l~-~~IYviGG~~~~--~~~~~~v~~Yd~~~n~W---~~~~~m~~~ 341 (557)
T PHA02713 273 CILVYNINT--MEYSVISTIPNH-IINYA--SAIVD-NEIIIAGGYNFN--NPSLNKVYKINIENKIH---VELPPMIKN 341 (557)
T ss_pred CEEEEeCCC--CeEEECCCCCcc-ccceE--EEEEC-CEEEEEcCCCCC--CCccceEEEEECCCCeE---eeCCCCcch
Confidence 578889887 666666654211 11112 22234 445555332111 11236789999988763 333321111
Q ss_pred eeccc-cCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCC-
Q 004735 246 YAFPR-MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG- 323 (732)
Q Consensus 246 ~~~p~-~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g- 323 (732)
-..+. -.-+| +|+.+....... ....+.++|.. +++......++..- ... ..-.-+|+||+.... .+
T Consensus 342 R~~~~~~~~~g-~IYviGG~~~~~--~~~sve~Ydp~-~~~W~~~~~mp~~r----~~~--~~~~~~g~IYviGG~-~~~ 410 (557)
T PHA02713 342 RCRFSLAVIDD-TIYAIGGQNGTN--VERTIECYTMG-DDKWKMLPDMPIAL----SSY--GMCVLDQYIYIIGGR-TEH 410 (557)
T ss_pred hhceeEEEECC-EEEEECCcCCCC--CCceEEEEECC-CCeEEECCCCCccc----ccc--cEEEECCEEEEEeCC-Ccc
Confidence 11111 22344 576665332111 13457888887 55443222121110 111 112346777766543 11
Q ss_pred --------------------eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC----
Q 004735 324 --------------------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---- 379 (732)
Q Consensus 324 --------------------~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g---- 379 (732)
...+.++|+.+.+.+.+.+........ ....+ ++.||+....++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-------~~~~~-----~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-------GVVSH-----KDDIYVVCDIKDEKNV 478 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-------cEEEE-----CCEEEEEeCCCCCCcc
Confidence 235888999998888776432111111 11222 345666653222
Q ss_pred EEEEEEEECCC-CceEEeccCCCceE--EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 380 RSYLGILDDFG-HSLSLLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 380 ~~~ly~~~~~~-~~~~~lt~~~~~v~--~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
...++++|+++ .+++.+..-..... .+..-+++++++++-. +...+..+|..+.+.+
T Consensus 479 ~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~-~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 479 KTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYE-SYMLQDTFNVYTYEWN 538 (557)
T ss_pred ceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeec-ceeehhhcCccccccc
Confidence 13578999998 78987765332222 2234466777766533 2334667777777653
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.9 Score=48.25 Aligned_cols=200 Identities=15% Similarity=0.179 Sum_probs=113.9
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEE
Q 004735 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170 (732)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~ 170 (732)
-++.++- .+.|||++... + .|-+.... |++++.++..+ +.+.-|-+..+....|+|.+.....|=+.
T Consensus 1028 VGidfDC~e~mvyWtDv~g----~-SI~rasL~-G~Ep~ti~n~~------L~SPEGiAVDh~~Rn~ywtDS~lD~IevA 1095 (1289)
T KOG1214|consen 1028 VGIDFDCRERMVYWTDVAG----R-SISRASLE-GAEPETIVNSG------LISPEGIAVDHIRRNMYWTDSVLDKIEVA 1095 (1289)
T ss_pred eeeecccccceEEEeecCC----C-cccccccc-CCCCceeeccc------CCCccceeeeeccceeeeeccccchhhee
Confidence 4666666 77899988733 2 23333333 34555555443 23333445667777899987666677777
Q ss_pred eCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-CCCceecc
Q 004735 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFP 249 (732)
Q Consensus 171 d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~~~~~~~p 249 (732)
.|++ ...+.|-..+ -+.-.....+|=+..|+|+-+++. +-.|-..++++.. .+.|.. +-..-++.
T Consensus 1096 ~LdG--~~rkvLf~td---LVNPR~iv~D~~rgnLYwtDWnRe------nPkIets~mDG~N---rRilin~DigLPNGL 1161 (1289)
T KOG1214|consen 1096 LLDG--SERKVLFYTD---LVNPRAIVVDPIRGNLYWTDWNRE------NPKIETSSMDGEN---RRILINTDIGLPNGL 1161 (1289)
T ss_pred ecCC--ceeeEEEeec---ccCcceEEeecccCceeecccccc------CCcceeeccCCcc---ceEEeecccCCCCCc
Confidence 7875 4444443321 222355667787777888876553 2467777888765 555543 33455677
Q ss_pred ccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEE
Q 004735 250 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH 328 (732)
Q Consensus 250 ~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~ 328 (732)
.|.|..+.|.|+..- ..+|-....+ |.- +++++.+- .+ .+....+++ +||+-.+ ...|.
T Consensus 1162 tfdpfs~~LCWvDAG-------t~rleC~~p~--g~g-RR~i~~~L-----qY--PF~itsy~~~fY~TDWk---~n~vv 1221 (1289)
T KOG1214|consen 1162 TFDPFSKLLCWVDAG-------TKRLECTLPD--GTG-RRVIQNNL-----QY--PFSITSYADHFYHTDWK---RNGVV 1221 (1289)
T ss_pred eeCcccceeeEEecC-------CcceeEecCC--CCc-chhhhhcc-----cC--ceeeeeccccceeeccc---cCceE
Confidence 889999999988621 2334444433 322 23333333 22 233445666 6665333 23466
Q ss_pred EEeccCCeE
Q 004735 329 KWIESNNEV 337 (732)
Q Consensus 329 ~~d~~~g~~ 337 (732)
.++..+++.
T Consensus 1222 sv~~~~~~~ 1230 (1289)
T KOG1214|consen 1222 SVNKHSGQF 1230 (1289)
T ss_pred Eeecccccc
Confidence 666665543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.62 E-value=5.4 Score=38.45 Aligned_cols=130 Identities=8% Similarity=-0.033 Sum_probs=72.3
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC-CeEEEecccccccCCCc
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NEVLAIYSLDAEFSRPL 351 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~-g~~~~l~~~~~~~~~~~ 351 (732)
..+.++|.. +|+..+. +.-. ..+.....++||+++.++.. + .+--+|+.+ +.++.. .....+.+..
T Consensus 165 ~tVRLWD~r-Tgt~v~s--L~~~-----s~VtSlEvs~dG~ilTia~g-s---sV~Fwdaksf~~lKs~-k~P~nV~SAS 231 (334)
T KOG0278|consen 165 KTVRLWDHR-TGTEVQS--LEFN-----SPVTSLEVSQDGRILTIAYG-S---SVKFWDAKSFGLLKSY-KMPCNVESAS 231 (334)
T ss_pred CceEEEEec-cCcEEEE--EecC-----CCCcceeeccCCCEEEEecC-c---eeEEeccccccceeec-cCcccccccc
Confidence 347788887 7765332 2222 34678899999997666654 2 244456554 222211 1222222322
Q ss_pred eeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEe--ccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEE
Q 004735 352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL--DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 352 w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~l--t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
.. .++.+|+...++ ..+|.+|..+|+.... ......|..+ .++++.+ |..++.++...||.
T Consensus 232 L~-------------P~k~~fVaGged--~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~-yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 232 LH-------------PKKEFFVAGGED--FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL-YASGSEDGTIRLWQ 295 (334)
T ss_pred cc-------------CCCceEEecCcc--eEEEEEeccCCceeeecccCCCCceEEEEECCCCce-eeccCCCceEEEEE
Confidence 22 333555555444 4577778888876655 2335567777 4556555 44555666666777
Q ss_pred EEc
Q 004735 429 VTL 431 (732)
Q Consensus 429 ~dl 431 (732)
...
T Consensus 296 t~~ 298 (334)
T KOG0278|consen 296 TTP 298 (334)
T ss_pred ecC
Confidence 643
|
|
| >COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.2 Score=51.59 Aligned_cols=67 Identities=19% Similarity=0.074 Sum_probs=46.4
Q ss_pred HHHHHHHHCCCEEEEEcC-CCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 515 LSIQYWTSRGWAFVDVNY-GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 515 ~~~~~l~~~G~~v~~~d~-rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
.....|.++|+.|+-+|- |-- |.+ ........|+...+++...+ ....++.++|+|+|+-+.-.+..
T Consensus 278 ~v~~~l~~~gvpVvGvdsLRYf------W~~----rtPe~~a~Dl~r~i~~y~~~--w~~~~~~liGySfGADvlP~~~n 345 (456)
T COG3946 278 EVAEALQKQGVPVVGVDSLRYF------WSE----RTPEQIAADLSRLIRFYARR--WGAKRVLLIGYSFGADVLPFAYN 345 (456)
T ss_pred HHHHHHHHCCCceeeeehhhhh------hcc----CCHHHHHHHHHHHHHHHHHh--hCcceEEEEeecccchhhHHHHH
Confidence 467889999999999994 210 111 11223367888888887765 24679999999999977655554
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.62 Score=51.10 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=80.5
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---HHHHHHHCCCEEEEEcCCCCCCCC----hhhH--H
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGSTGYG----REFR--E 544 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~rG~~g~g----~~~~--~ 544 (732)
.|...+++|.+ +++ . ++.+-||+.. ....... ....-..+||+++.-|- |..+.. .++. .
T Consensus 16 ~i~fev~LP~~--WNg------R-~~~~GgGG~~-G~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~ 84 (474)
T PF07519_consen 16 NIRFEVWLPDN--WNG------R-FLQVGGGGFA-GGINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNP 84 (474)
T ss_pred eEEEEEECChh--hcc------C-eEEECCCeee-CcccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCH
Confidence 67778888974 321 2 3333333222 1111111 13445688999999994 222211 1111 1
Q ss_pred hhccCCCcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 613 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~ 613 (732)
....+|+...+.+...+.+.|++. +...+++-...|.|.||--++..+. +|+.|.++++.+|..++..+
T Consensus 85 ~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~~~ 155 (474)
T PF07519_consen 85 EALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWTHL 155 (474)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHHHH
Confidence 111234444455666666777665 5556889999999999999999999 99999999999998876543
|
It also includes several bacterial homologues of unknown function. |
| >KOG2521 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.8 Score=44.73 Aligned_cols=215 Identities=14% Similarity=0.129 Sum_probs=120.4
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|+|+++... +............+.+.||.++.+-.+-.. . ......+..-.......+..|.+....|+
T Consensus 38 ~k~Iv~~~gWa--g~~~r~l~ky~~~Yq~~g~~~~~~tap~~~---~----~~~~s~~~~sl~~~~~~l~~L~~~~~~~~ 108 (350)
T KOG2521|consen 38 EKPIVVLLGWA--GAIDRNLMKYSKIYQDKGYIVVRITAPCPS---V----FLSASRRILSLSLASTRLSELLSDYNSDP 108 (350)
T ss_pred cccEEEEeeec--cccchhHHHHHHHHhcCCceEEEecCcccc---c----ccccccccchhhHHHHHHHHHhhhccCCc
Confidence 34788777543 222234444666778889988877643111 0 01111122223445566667777666889
Q ss_pred CcEEEEEcChHHHHHHHHH---h--C-CC---cceEEEeec-C-----cCCHHHHHhhc--chhhhhhhhhh--------
Q 004735 574 KRLCITGGSAGGYTTLAAL---A--F-RD---TFKAGASLY-G-----VADLSMLRAET--HKFESRYIDNL-------- 628 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~---~--~-p~---~~~a~v~~~-~-----~~d~~~~~~~~--~~~~~~~~~~~-------- 628 (732)
..+.+.-+|+||.+.+... . + |. ++.+.+..+ | +.+........ ......+....
T Consensus 109 ~pi~fh~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~ 188 (350)
T KOG2521|consen 109 CPIIFHVFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLGWAVSFSSPPDDYVARWARLNYHITLLTM 188 (350)
T ss_pred CceEEEEecCCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhcceeccccCchhhHHHHHhcCeEEEEEEe
Confidence 9999999999997776554 1 2 22 222222221 1 11111100000 00000000000
Q ss_pred cCC---h---hhhhhcCcc----cc-----CCCC--CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004735 629 VGS---E---KDYYEKSPI----NF-----VDKF--SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691 (732)
Q Consensus 629 ~~~---~---~~~~~~sp~----~~-----~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH 691 (732)
... . .......+. .+ -... ..+.+.+.+..|.++|..+.+++.+..+..|..++..-+.+.-|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H 268 (350)
T KOG2521|consen 189 AGNEGGAYLLGPLAEKISMSRKYHFLDRYEEQRNELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEH 268 (350)
T ss_pred eecccchhhhhhhhhccccccchHHHHHHHhhhhcccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccc
Confidence 000 0 000000000 00 1112 46778888999999999999999999999999999999999989
Q ss_pred cCCCcccHHHHHHHHHHHHHHHhCCC
Q 004735 692 GFRKAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 692 ~~~~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
.-.-........+...+|++......
T Consensus 269 ~~h~r~~p~~y~~~~~~Fl~~~~~~~ 294 (350)
T KOG2521|consen 269 VAHFRSFPKTYLKKCSEFLRSVISSY 294 (350)
T ss_pred eeeeccCcHHHHHHHHHHHHhccccc
Confidence 65444566889999999999988643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=92.52 E-value=12 Score=37.15 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=42.6
Q ss_pred cccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC-Cce-eeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDV-YKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
...+.||+.||.+. + +.|-+-....+ +.+ .+..+..+..|+| ..++||||+.++..++. .|.
T Consensus 3 ~~~~~~Gk~lAi~q-d--------~~iEiRsa~Ddf~si~~kcqVpkD~~PQW----Rkl~WSpD~tlLa~a~S-~G~-- 66 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-D--------QCIEIRSAKDDFSSIIGKCQVPKDPNPQW----RKLAWSPDCTLLAYAES-TGT-- 66 (282)
T ss_pred eeecCCCcEEEEEe-c--------cEEEEEeccCCchheeEEEecCCCCCchh----eEEEECCCCcEEEEEcC-CCe--
Confidence 45689999999887 1 12322222211 122 2223333333333 47899999994444444 454
Q ss_pred EEEEeccCCeEEEecc
Q 004735 327 LHKWIESNNEVLAIYS 342 (732)
Q Consensus 327 l~~~d~~~g~~~~l~~ 342 (732)
|..+|+.+.+...|.+
T Consensus 67 i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 67 IRVFDLMGSELFVIPP 82 (282)
T ss_pred EEEEecccceeEEcCc
Confidence 5556777766665543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.50 E-value=4.9 Score=39.93 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=86.9
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
.++..|+|...- +....++ ..|-++|...-.....-.+..+...+....|.|.|..|+.- .+++-
T Consensus 175 vn~l~FHPre~I-LiS~srD--------~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg-TdHp~----- 239 (430)
T KOG0640|consen 175 VNDLDFHPRETI-LISGSRD--------NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG-TDHPT----- 239 (430)
T ss_pred ccceeecchhhe-EEeccCC--------CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe-cCCCc-----
Confidence 467789998774 4433322 45666676532200011122334455667899999988654 35543
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCc
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPL 351 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~ 351 (732)
+.++|++ +-.. -+-...+.+..+.+..+..|+.|+||.+... .|...|| |--++ |.+... +...+.
T Consensus 240 --~rlYdv~-T~Qc---fvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-DG~Iklw--DGVS~--rCv~t~~~AH~gs-- 306 (430)
T KOG0640|consen 240 --LRLYDVN-TYQC---FVSANPDDQHTGAITQVRYSSTGSLYVTASK-DGAIKLW--DGVSN--RCVRTIGNAHGGS-- 306 (430)
T ss_pred --eeEEecc-ceeE---eeecCcccccccceeEEEecCCccEEEEecc-CCcEEee--ccccH--HHHHHHHhhcCCc--
Confidence 7888887 3211 1111111122256778899999999888776 6765554 43333 222211 111111
Q ss_pred eeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 352 w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
......|. +++.+++++..+....||.+.
T Consensus 307 ---evcSa~Ft----kn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 307 ---EVCSAVFT----KNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ---eeeeEEEc----cCCeEEeecCCcceeeeeeec
Confidence 12223444 566677777777777777654
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=92.26 E-value=14 Score=37.38 Aligned_cols=144 Identities=17% Similarity=0.073 Sum_probs=81.7
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCC----CceecCCCCCCCCeEeeceeecCCCCEEEEEEe----cc-CCCCCCc
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDS----SPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE----DR-RQDALNS 219 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~----~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~----~~-~~~~~~~ 219 (732)
..++.++.++|++..-+-|-.++..-. - +|.-++.-......+.+..+. -||+- .||.. +. .++-+..
T Consensus 107 dia~~~~~l~fVNT~fSCLatl~~~~S-F~P~WkPpFIs~la~eDRCHLNGlA~-~~g~p-~yVTa~~~sD~~~gWR~~~ 183 (335)
T TIGR03032 107 DLALGAGRLLFVNTLFSCLATVSPDYS-FVPLWKPPFISKLAPEDRCHLNGMAL-DDGEP-RYVTALSQSDVADGWREGR 183 (335)
T ss_pred heeecCCcEEEEECcceeEEEECCCCc-cccccCCccccccCccCceeecceee-eCCeE-EEEEEeeccCCcccccccc
Confidence 344455577777766666666665320 1 222233211112467777765 46653 44432 11 1121122
Q ss_pred eeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCc
Q 004735 220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (732)
Q Consensus 220 ~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~ 299 (732)
...=.++|+.+++ .+.+|-.+--+|+|- ||+ |.+..+ ...+++.+|.+ +|+...+..+++
T Consensus 184 ~~gG~vidv~s~e-----vl~~GLsmPhSPRWh-dgr-Lwvlds-------gtGev~~vD~~-~G~~e~Va~vpG----- 243 (335)
T TIGR03032 184 RDGGCVIDIPSGE-----VVASGLSMPHSPRWY-QGK-LWLLNS-------GRGELGYVDPQ-AGKFQPVAFLPG----- 243 (335)
T ss_pred cCCeEEEEeCCCC-----EEEcCccCCcCCcEe-CCe-EEEEEC-------CCCEEEEEcCC-CCcEEEEEECCC-----
Confidence 3444568988876 566777777789996 555 766652 35669999987 787755544444
Q ss_pred cccCcCceeCCCCcEEEEEe
Q 004735 300 VESPTEPKWSSKGELFFVTD 319 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~ 319 (732)
......|. |+++|++-
T Consensus 244 --~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 244 --FTRGLAFA--GDFAFVGL 259 (335)
T ss_pred --CCccccee--CCEEEEEe
Confidence 34677887 77655543
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.26 E-value=13 Score=39.09 Aligned_cols=161 Identities=9% Similarity=0.021 Sum_probs=82.3
Q ss_pred EeeceeecCCCC-EEEEEEeccCCCCCCceeEEEEEEcCCCC--ccccEEcccCCCceeccccCCCCCeEEEEeccCCCC
Q 004735 192 SYADGIFDPRFN-RYVTVREDRRQDALNSTTEIVAIALNGQN--IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 192 ~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
+.....|+|--. .++.+.+.. .+|-++|+.+.+ ...+...+.....+....|||-..--.|.+.-
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~--------G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy---- 255 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKG--------GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY---- 255 (498)
T ss_pred ceEEEEecccCcceEEEEccCC--------CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc----
Confidence 456677999655 666665433 577777885322 00011223333456677889944433344311
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccccccc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF 347 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~ 347 (732)
.+.|..+|++ ++....+..+.... ..+....++.+.. ++|..+. |..+++-....+.+...+.-.+.-+
T Consensus 256 ---DGtiR~~D~~-~~i~e~v~s~~~d~----~~fs~~d~~~e~~~vl~~~~~--G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 256 ---DGTIRLQDFE-GNISEEVLSLDTDN----IWFSSLDFSAESRSVLFGDNV--GNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ---Cceeeeeeec-chhhHHHhhcCccc----eeeeeccccCCCccEEEeecc--cceEEEEeecCCccchhhhhhhccc
Confidence 2348889998 55432222222222 4566777888777 7776665 4445543333333333333111122
Q ss_pred CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
......| -..+++.++.-++...||-+
T Consensus 326 ~sv~~NP------------~~p~~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 326 TSVALNP------------VCPWFLATASLDQTAKIWDL 352 (498)
T ss_pred ceeecCC------------CCchheeecccCcceeeeeh
Confidence 2221111 23345566666666667744
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.46 Score=42.49 Aligned_cols=52 Identities=21% Similarity=0.075 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CC----CcceEEEeecCcC
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FR----DTFKAGASLYGVA 608 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p----~~~~a~v~~~~~~ 608 (732)
.+.+...++.+.+++. ..+|.+.|||+||.+|..++. +. ..+++....+|..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 3456666666666654 479999999999999987765 22 4566666666644
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=92.03 E-value=3.3 Score=41.51 Aligned_cols=51 Identities=10% Similarity=-0.074 Sum_probs=31.2
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEe
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE 210 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~ 210 (732)
+.++......|.|+++|+.++ .-...+-.. +...++..+.|+.-+++....
T Consensus 105 ~p~la~~G~~GvIrVid~~~~-~~~~~~~gh----G~sINeik~~p~~~qlvls~S 155 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG-QCSKNYRGH----GGSINEIKFHPDRPQLVLSAS 155 (385)
T ss_pred CeeEEeecceeEEEEEecchh-hhccceecc----CccchhhhcCCCCCcEEEEec
Confidence 445555556678999999762 222333332 556788889998755554433
|
|
| >COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.41 Score=48.53 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeec-CcCCHHHHHhhcc---------hhhhh
Q 004735 555 VNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY-GVADLSMLRAETH---------KFESR 623 (732)
Q Consensus 555 ~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~-~~~d~~~~~~~~~---------~~~~~ 623 (732)
+.-+..|.+...++ ..+.-++..+.|.|--|..++..+....++.++|... -+.+......... .+...
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~py 293 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPRVFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPY 293 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcchhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccchh
Confidence 33344444444332 2345678999999999999988887555566666542 2233222111100 01111
Q ss_pred h---hhhhcCCh---hhhhhcCccccC-----CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 624 Y---IDNLVGSE---KDYYEKSPINFV-----DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 624 ~---~~~~~~~~---~~~~~~sp~~~~-----~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
| +.+.++.+ +...-.+|+.+. .++..|-.|+.+..|...+++.+.-+++.|.. ...+.+.|+..|.
T Consensus 294 yaegi~erl~tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG---~kaLrmvPN~~H~ 370 (507)
T COG4287 294 YAEGIDERLETPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPG---EKALRMVPNDPHN 370 (507)
T ss_pred HhhhHHHhhcCHHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCC---ceeeeeCCCCcch
Confidence 1 11111222 233445666554 56789999999999999999999999998875 4578999999997
Q ss_pred CCCcccHHHHHHHHHHHHHHHhC
Q 004735 693 FRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 693 ~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
... ....+.+..|+.++..
T Consensus 371 ~~n----~~i~esl~~flnrfq~ 389 (507)
T COG4287 371 LIN----QFIKESLEPFLNRFQM 389 (507)
T ss_pred hhH----HHHHHHHHHHHHHHhc
Confidence 532 2233445555555443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.65 E-value=2.5 Score=42.23 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=61.6
Q ss_pred eeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC-ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccE
Q 004735 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (732)
Q Consensus 196 ~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~ 274 (732)
-+|++|+..++....++ ++.+....+.. ......|......+....|+|-+.+|+-.+-++.
T Consensus 16 hAwn~drt~iAv~~~~~---------evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-------- 78 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNH---------EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-------- 78 (361)
T ss_pred eeecCCCceEEeccCCc---------eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC--------
Confidence 46999999977665533 44444444333 2223445555566778999999999987664442
Q ss_pred EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 275 l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
-|+.....+|+.++..++-... +....+.|+|.+..+
T Consensus 79 ayVw~~~~~~~WkptlvLlRiN----rAAt~V~WsP~enkF 115 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRIN----RAATCVKWSPKENKF 115 (361)
T ss_pred ccccccCCCCeeccceeEEEec----cceeeEeecCcCceE
Confidence 3555542267665554444444 556789999998733
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.64 E-value=2.4 Score=43.73 Aligned_cols=105 Identities=10% Similarity=0.001 Sum_probs=63.3
Q ss_pred EEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 222 ~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
.|-.+|..+.. .++-....+.+.....|+||..|.-.+ ++ ..|-++|+. +-++. ..+....-..-.
T Consensus 323 kvRfwD~Rs~~---~~~sv~~gg~vtSl~ls~~g~~lLsss-RD-------dtl~viDlR-t~eI~--~~~sA~g~k~as 388 (459)
T KOG0288|consen 323 KVRFWDIRSAD---KTRSVPLGGRVTSLDLSMDGLELLSSS-RD-------DTLKVIDLR-TKEIR--QTFSAEGFKCAS 388 (459)
T ss_pred ceEEEeccCCc---eeeEeecCcceeeEeeccCCeEEeeec-CC-------Cceeeeecc-cccEE--EEeecccccccc
Confidence 57777877665 444444445677788999999986543 22 227788877 44442 222221100002
Q ss_pred cCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccc
Q 004735 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL 343 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 343 (732)
......|||||+++.... -...||+++..+|+...+...
T Consensus 389 DwtrvvfSpd~~YvaAGS---~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGS---ADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred ccceeEECCCCceeeecc---CCCcEEEEEccCceEEEEecc
Confidence 346788999998433322 234588888899998877644
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=91.60 E-value=15 Score=39.79 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=49.7
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCC----CCeEeeceeecCCC-----CEEEEEEeccCCCCC--CceeEEE
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE----PLVSYADGIFDPRF-----NRYVTVREDRRQDAL--NSTTEIV 224 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~----~~~~~~~~~~spdG-----~~l~~~~~~~~~~~~--~~~~~l~ 224 (732)
+++++....++|++++..+ +..+.+...+.. ...-..+++++||- +..+|+......... .....|.
T Consensus 42 ~llVtER~~G~I~~v~~~~--~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~ 119 (454)
T TIGR03606 42 QLWVTERATGKILRVNPET--GEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIV 119 (454)
T ss_pred eEEEEEecCCEEEEEeCCC--CceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEE
Confidence 5655553358899998764 433322211100 01223566788763 223444321111100 0136787
Q ss_pred EEEcCC--CCccccEEcccCC-----CceeccccCCCCCeEEEEeccC
Q 004735 225 AIALNG--QNIQEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 225 ~~d~~~--~~~~~~~~lt~~~-----~~~~~p~~SPDG~~la~~~~~~ 265 (732)
++.++. ......+.|..+. -+-....|.|||+ |++...+.
T Consensus 120 R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 120 RYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred EEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence 777652 2211123332211 1223567999996 76654443
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.42 Score=49.42 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=58.6
Q ss_pred HHHHHCCCEEEEEcCCCCC---CCChh-hHHhhccCC--CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHH
Q 004735 518 QYWTSRGWAFVDVNYGGST---GYGRE-FRERLLGRW--GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA 591 (732)
Q Consensus 518 ~~l~~~G~~v~~~d~rG~~---g~g~~-~~~~~~~~~--~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~ 591 (732)
....+.+-.++-+..|-.| .+|.. +....+-.+ -+....|....+.+|++........|+.+|.|+||+++.+.
T Consensus 105 D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWf 184 (492)
T KOG2183|consen 105 DLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWF 184 (492)
T ss_pred hhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHH
Confidence 3334557778888876322 23333 211111111 12237888889999988866677899999999999999998
Q ss_pred Hh-CCCcceEEEeec
Q 004735 592 LA-FRDTFKAGASLY 605 (732)
Q Consensus 592 ~~-~p~~~~a~v~~~ 605 (732)
=. +|..+.++.+.+
T Consensus 185 RlKYPHiv~GAlAaS 199 (492)
T KOG2183|consen 185 RLKYPHIVLGALAAS 199 (492)
T ss_pred HhcChhhhhhhhhcc
Confidence 76 998877766544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.37 E-value=2.5 Score=43.07 Aligned_cols=144 Identities=8% Similarity=0.039 Sum_probs=78.9
Q ss_pred eEEEEEEcCCCCcc-ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCc
Q 004735 221 TEIVAIALNGQNIQ-EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (732)
Q Consensus 221 ~~l~~~d~~~~~~~-~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~ 299 (732)
..||+....+|.+. ..+.++.....+-...|||..+.+++...- ...|.+.|+. .|.-+........+
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~-------DgsIrIWDiR-s~~~~~~~~~kAh~--- 302 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC-------DGSIRIWDIR-SGPKKAAVSTKAHN--- 302 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec-------CceEEEEEec-CCCccceeEeeccC---
Confidence 56777766665422 123445545566678999988887655422 2348888987 55322223333333
Q ss_pred cccCcCceeCCCCcEEEEEeccCCeeeEEEEe-ccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEE
Q 004735 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWI-ESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d-~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~ 377 (732)
..+.-+.|+.+-.++....+ .|.+.||-+. ...++.. ........++...|.| ....++..+..
T Consensus 303 -sDVNVISWnr~~~lLasG~D-dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p------------~e~s~iaasg~ 368 (440)
T KOG0302|consen 303 -SDVNVISWNRREPLLASGGD-DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP------------HEDSVIAASGE 368 (440)
T ss_pred -CceeeEEccCCcceeeecCC-CceEEEEEhhhccCCCcceeEEeccCCeeEEEecc------------ccCceEEeccC
Confidence 45667889876554544444 6777776332 2223211 1222333444555665 34445555555
Q ss_pred CCEEEEEEEECC
Q 004735 378 NGRSYLGILDDF 389 (732)
Q Consensus 378 ~g~~~ly~~~~~ 389 (732)
+.+-.||-+.++
T Consensus 369 D~QitiWDlsvE 380 (440)
T KOG0302|consen 369 DNQITIWDLSVE 380 (440)
T ss_pred CCcEEEEEeecc
Confidence 666667766544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.20 E-value=12 Score=38.41 Aligned_cols=138 Identities=10% Similarity=0.045 Sum_probs=79.6
Q ss_pred eEEEEeCCCCC--CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cC
Q 004735 166 RLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SG 242 (732)
Q Consensus 166 ~l~~~d~~~~~--~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~ 242 (732)
.|+++...++. -..++++.. ...+-+.+|||.-+-+++.+.-+ ..|-++|+..+.. +...++ ..
T Consensus 235 ~I~lw~~~~g~W~vd~~Pf~gH----~~SVEDLqWSptE~~vfaScS~D--------gsIrIWDiRs~~~-~~~~~~kAh 301 (440)
T KOG0302|consen 235 GIHLWEPSTGSWKVDQRPFTGH----TKSVEDLQWSPTEDGVFASCSCD--------GSIRIWDIRSGPK-KAAVSTKAH 301 (440)
T ss_pred ceEeeeeccCceeecCcccccc----ccchhhhccCCccCceEEeeecC--------ceEEEEEecCCCc-cceeEeecc
Confidence 56666665410 013344433 45567899999888888887644 4677778776631 023333 22
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC--CCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEe
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD 319 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~--~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~ 319 (732)
..-++-..|+-+-..||+-. +...+.++|+.. .|+ .+..+.... ..+..+.|+|... ++..+.
T Consensus 302 ~sDVNVISWnr~~~lLasG~--------DdGt~~iwDLR~~~~~~--pVA~fk~Hk----~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGG--------DDGTLSIWDLRQFKSGQ--PVATFKYHK----APITSIEWHPHEDSVIAASG 367 (440)
T ss_pred CCceeeEEccCCcceeeecC--------CCceEEEEEhhhccCCC--cceeEEecc----CCeeEEEeccccCceEEecc
Confidence 23456678887776555433 345588888861 232 244454444 5678899999755 444443
Q ss_pred ccCCeeeEEEEe
Q 004735 320 RKNGFWNLHKWI 331 (732)
Q Consensus 320 ~~~g~~~l~~~d 331 (732)
. ..+..||-+.
T Consensus 368 ~-D~QitiWDls 378 (440)
T KOG0302|consen 368 E-DNQITIWDLS 378 (440)
T ss_pred C-CCcEEEEEee
Confidence 3 4555565443
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.17 E-value=3.2 Score=42.94 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=77.7
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEE------
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS------ 160 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~------ 160 (732)
..+|-++++.. ++.+|.-+ +-.-|+..++++| .++.+++...+..-.+.. ...... .+.++|+
T Consensus 114 CGRPLGl~f~~~ggdL~VaD------AYlGL~~V~p~g~-~a~~l~~~~~G~~~kf~N--~ldI~~-~g~vyFTDSSsk~ 183 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVAD------AYLGLLKVGPEGG-LAELLADEAEGKPFKFLN--DLDIDP-EGVVYFTDSSSKY 183 (376)
T ss_pred cCCcceEEeccCCCeEEEEe------cceeeEEECCCCC-cceeccccccCeeeeecC--ceeEcC-CCeEEEecccccc
Confidence 36778999998 77777755 2334666666533 555555443222211110 001111 2223333
Q ss_pred -----------eCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 161 -----------NYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 161 -----------~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
...+|+|+.+|..+ ...+.|..+ -...+..+.|||++++++..... .+|.++=+.
T Consensus 184 ~~rd~~~a~l~g~~~GRl~~YD~~t--K~~~VLld~----L~F~NGlaLS~d~sfvl~~Et~~--------~ri~rywi~ 249 (376)
T KOG1520|consen 184 DRRDFVFAALEGDPTGRLFRYDPST--KVTKVLLDG----LYFPNGLALSPDGSFVLVAETTT--------ARIKRYWIK 249 (376)
T ss_pred chhheEEeeecCCCccceEEecCcc--cchhhhhhc----ccccccccCCCCCCEEEEEeecc--------ceeeeeEec
Confidence 23457899999987 777777765 22336788999999987764422 344444444
Q ss_pred CCCccccEEccc-CCCceeccccCCCCC
Q 004735 230 GQNIQEPKVLVS-GSDFYAFPRMDPRGE 256 (732)
Q Consensus 230 ~~~~~~~~~lt~-~~~~~~~p~~SPDG~ 256 (732)
+.+.......++ -+++--+.+-+++|.
T Consensus 250 g~k~gt~EvFa~~LPG~PDNIR~~~~G~ 277 (376)
T KOG1520|consen 250 GPKAGTSEVFAEGLPGYPDNIRRDSTGH 277 (376)
T ss_pred CCccCchhhHhhcCCCCCcceeECCCCC
Confidence 433000233333 234434456667775
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.91 E-value=20 Score=40.69 Aligned_cols=62 Identities=8% Similarity=0.036 Sum_probs=37.3
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccc
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL 343 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 343 (732)
+|-++-++ |+.+++...++- .....+.-.+=+. |||+-.. +..-.|-+.+.++.+.|.+...
T Consensus 1091 ~IevA~Ld--G~~rkvLf~tdL-----VNPR~iv~D~~rgnLYwtDWn-RenPkIets~mDG~NrRilin~ 1153 (1289)
T KOG1214|consen 1091 KIEVALLD--GSERKVLFYTDL-----VNPRAIVVDPIRGNLYWTDWN-RENPKIETSSMDGENRRILINT 1153 (1289)
T ss_pred hhheeecC--CceeeEEEeecc-----cCcceEEeecccCceeecccc-ccCCcceeeccCCccceEEeec
Confidence 45666664 655444333332 3444566666666 8886544 6667788888887776666644
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=18 Score=40.81 Aligned_cols=215 Identities=11% Similarity=-0.036 Sum_probs=101.5
Q ss_pred ECCEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 153 ~~~~i~f~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
.++.|++..... .++|.+|+.+ ..-..++.-+. .+.......-+| +|+.+...... .....++++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~---~R~~~~~~~~~~-~lyv~GG~~~~---~~~~~v~~y 363 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKT--KSWNKVPELIY---PRKNPGVTVFNN-RIYVIGGIYNS---ISLNTVESW 363 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCC--CeeeECCCCCc---ccccceEEEECC-EEEEEeCCCCC---EecceEEEE
Confidence 355555543321 2689999987 66666654321 121111222344 45555432211 124678888
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|+.+++++....+.... .......-+| +|+.......+.. ....++++|+. +++......++.. .. ...
T Consensus 364 d~~~~~W~~~~~lp~~r--~~~~~~~~~~-~iYv~GG~~~~~~-~~~~v~~yd~~-t~~W~~~~~~p~~-----r~-~~~ 432 (534)
T PHA03098 364 KPGESKWREEPPLIFPR--YNPCVVNVNN-LIYVIGGISKNDE-LLKTVECFSLN-TNKWSKGSPLPIS-----HY-GGC 432 (534)
T ss_pred cCCCCceeeCCCcCcCC--ccceEEEECC-EEEEECCcCCCCc-ccceEEEEeCC-CCeeeecCCCCcc-----cc-Cce
Confidence 98887642222222111 1111122244 4655442211110 13568899987 5554322211111 11 112
Q ss_pred eeCCCCcEEEEEeccC-----CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC--
Q 004735 307 KWSSKGELFFVTDRKN-----GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-- 379 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~-----g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g-- 379 (732)
...-+++||+...... ....++++|+.+++.+.+.... .+.+.. ..... + +.||+.....+
T Consensus 433 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~----~~r~~~---~~~~~----~-~~iyv~GG~~~~~ 500 (534)
T PHA03098 433 AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN----FPRINA---SLCIF----N-NKIYVVGGDKYEY 500 (534)
T ss_pred EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC----cccccc---eEEEE----C-CEEEEEcCCcCCc
Confidence 2334566665543211 1234899999999888775321 111110 11111 3 34554432221
Q ss_pred -EEEEEEEECCCCceEEeccC
Q 004735 380 -RSYLGILDDFGHSLSLLDIP 399 (732)
Q Consensus 380 -~~~ly~~~~~~~~~~~lt~~ 399 (732)
...++.+|+++.+++.+...
T Consensus 501 ~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 501 YINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred ccceeEEEeCCCCEEEecCCC
Confidence 34688889988888877653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.86 E-value=2.1 Score=49.73 Aligned_cols=160 Identities=9% Similarity=0.028 Sum_probs=93.1
Q ss_pred CceeEEECC--EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 147 ~~~~~~~~~--~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+.+++|... .|+.+...++...++|+... .....++... ...+.....|+||+..-+.+..+.... ..|-
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~--~~~~~S~l~WhP~~aTql~~As~dd~~-----Pviq 235 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTP--GRMHCSVLAWHPDHATQLLVASGDDSA-----PVIQ 235 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCC--CccceeeeeeCCCCceeeeeecCCCCC-----ceeE
Confidence 445555433 56666666678889999851 2223333332 135678899999885444554433222 3555
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
.+|+.--. .+.+.++....-+....|++.+.+++..+.. ..++++.+.+ +|++ +-.++... ....
T Consensus 236 lWDlR~as-sP~k~~~~H~~GilslsWc~~D~~lllSsgk-------D~~ii~wN~~-tgEv--l~~~p~~~----nW~f 300 (1049)
T KOG0307|consen 236 LWDLRFAS-SPLKILEGHQRGILSLSWCPQDPRLLLSSGK-------DNRIICWNPN-TGEV--LGELPAQG----NWCF 300 (1049)
T ss_pred eecccccC-CchhhhcccccceeeeccCCCCchhhhcccC-------CCCeeEecCC-CceE--eeecCCCC----ccee
Confidence 56654321 1134444444445678999988777666522 3458888888 7876 44444433 4467
Q ss_pred CceeCCCCc-EEEEEeccCCeeeEEEE
Q 004735 305 EPKWSSKGE-LFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 305 ~~~wspDg~-l~~~~~~~~g~~~l~~~ 330 (732)
.+.|.|..- ++-.+.- .|...||-+
T Consensus 301 dv~w~pr~P~~~A~asf-dgkI~I~sl 326 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASF-DGKISIYSL 326 (1049)
T ss_pred eeeecCCCcchhhhhee-ccceeeeee
Confidence 889998654 4444444 577677644
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=29 Score=39.30 Aligned_cols=217 Identities=9% Similarity=0.008 Sum_probs=106.0
Q ss_pred EEECCEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 151 RIFGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 151 ~~~~~~i~f~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+.-++.|++..+.+ ..++.+|+.+ ..-..+.+-+ ..+.......-+| +|+.+....+.. ....+.
T Consensus 300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W~~~~~m~---~~R~~~~~~~~~g-~IYviGG~~~~~---~~~sve 370 (557)
T PHA02713 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIEN--KIHVELPPMI---KNRCRFSLAVIDD-TIYAIGGQNGTN---VERTIE 370 (557)
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEECCC--CeEeeCCCCc---chhhceeEEEECC-EEEEECCcCCCC---CCceEE
Confidence 33456666654322 3689999886 5555555431 1111111223345 455554432111 135688
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCC----------------CccEEEEEEecCCCceee
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW----------------DKAELWVGYISENGDVYK 288 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~----------------~~~~l~v~d~~~~g~~~~ 288 (732)
++|+.+.+++....+........ ...-+| +|+.+........+ ....+.++|.. +.+...
T Consensus 371 ~Ydp~~~~W~~~~~mp~~r~~~~--~~~~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~-td~W~~ 446 (557)
T PHA02713 371 CYTMGDDKWKMLPDMPIALSSYG--MCVLDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV-NNIWET 446 (557)
T ss_pred EEECCCCeEEECCCCCccccccc--EEEECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCC-CCeEee
Confidence 88998876422222221111111 112244 46655532211000 12457888877 554432
Q ss_pred eEEecCCCCCccccCcCceeCCCCcEEEEEeccC--Ce-eeEEEEeccC-CeEEEecccccccCCCceeecccceeeeee
Q 004735 289 RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN--GF-WNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQS 364 (732)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~--g~-~~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~ 364 (732)
+..+... .. ....-.-+|+||+...... +. ..+.++|+.+ .+.+.+.+....... .....
T Consensus 447 v~~m~~~-----r~-~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-------~~~~~--- 510 (557)
T PHA02713 447 LPNFWTG-----TI-RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-------LHTIL--- 510 (557)
T ss_pred cCCCCcc-----cc-cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-------ceeEE---
Confidence 2211111 11 1112334667777654311 11 2467899998 788877643211111 11222
Q ss_pred cCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 365 HGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 365 ~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
-++.||+....++...+..+|+.+.+++.+..
T Consensus 511 --~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 511 --HDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred --ECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 24567777666666667788888888877654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=16 Score=36.24 Aligned_cols=194 Identities=8% Similarity=-0.055 Sum_probs=96.4
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC--cccCCCCCcccccccccCCceeEEE--CCEEEEEeCCCCe
Q 004735 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQR 166 (732)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~l~~~~~~~~~~~~~~g~~~~~~~--~~~i~f~~~~~~~ 166 (732)
..+.|.| ...+|= +.-...+...+||+...+.+ +. .-++. +.+..-+.--..+|.|- +-.++-+..-+..
T Consensus 100 tK~~wiPd~~g~~p-dlLATs~D~LRlWri~~ee~-~~~~~~~L~---~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYP-DLLATSSDFLRLWRIGDEES-RVELQSVLN---NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred cceEecCCccccCc-chhhcccCeEEEEeccCcCC-ceehhhhhc---cCcccccCCcccccccccCCcceeEeecccCe
Confidence 4677777 332222 22222345557788765421 11 11111 11111111123445543 2234444445555
Q ss_pred EEEEeCCCCCCC----ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-c
Q 004735 167 LYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-S 241 (732)
Q Consensus 167 l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~ 241 (732)
--++|+.+ +. .+||-.. +-...|.+|+-+|..+++....+ ..+-++|+...+ -..+. +
T Consensus 175 CTiWdie~--~~~~~vkTQLIAH----DKEV~DIaf~~~s~~~FASvgaD--------GSvRmFDLR~le---HSTIIYE 237 (364)
T KOG0290|consen 175 CTIWDIET--GVSGTVKTQLIAH----DKEVYDIAFLKGSRDVFASVGAD--------GSVRMFDLRSLE---HSTIIYE 237 (364)
T ss_pred EEEEEEee--ccccceeeEEEec----CcceeEEEeccCccceEEEecCC--------CcEEEEEecccc---cceEEec
Confidence 55667765 31 2344433 34568899999998876665533 356666776644 22222 2
Q ss_pred CCC---ceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEE
Q 004735 242 GSD---FYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 316 (732)
Q Consensus 242 ~~~---~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~ 316 (732)
++. .....+|++ |=+++|-.. .+..++.+.|+.--+.. +..+.+.. ..+..++|.|-.+ -+.
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~-------~dS~~V~iLDiR~P~tp--va~L~~H~----a~VNgIaWaPhS~~hic 304 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFA-------MDSNKVVILDIRVPCTP--VARLRNHQ----ASVNGIAWAPHSSSHIC 304 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhh-------cCCceEEEEEecCCCcc--eehhhcCc----ccccceEecCCCCceee
Confidence 221 111123333 222232221 14567888888722222 44455554 7889999999877 665
Q ss_pred EEec
Q 004735 317 VTDR 320 (732)
Q Consensus 317 ~~~~ 320 (732)
++.+
T Consensus 305 taGD 308 (364)
T KOG0290|consen 305 TAGD 308 (364)
T ss_pred ecCC
Confidence 5544
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=90.71 E-value=12 Score=40.74 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=24.2
Q ss_pred CCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEE
Q 004735 79 LTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLV 118 (732)
Q Consensus 79 ~~~~~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~ 118 (732)
++++.+...-..+.++.|.|+++++.++.. .|+..++
T Consensus 20 f~~~~va~GL~~Pw~maflPDG~llVtER~---~G~I~~v 56 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPDNQLWVTERA---TGKILRV 56 (454)
T ss_pred cEEEEEECCCCCceEEEEcCCCeEEEEEec---CCEEEEE
Confidence 455556555567889999996678887752 2554433
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.57 E-value=5.8 Score=42.41 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=34.8
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEE
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~ 318 (732)
-...-+|||||.-|.-.. + .+.|-++.- +|-++ ..+.... ..+..++|.|++. ++|..
T Consensus 106 A~~~gRW~~dGtgLlt~G--E------DG~iKiWSr--sGMLR--Stl~Q~~----~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAG--E------DGVIKIWSR--SGMLR--STVVQNE----ESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred hhhhcccCCCCceeeeec--C------CceEEEEec--cchHH--HHHhhcC----ceeEEEEECCCCCceEEec
Confidence 344569999999886543 2 223444432 46542 2223332 5677889999988 77654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.52 E-value=5.4 Score=39.65 Aligned_cols=158 Identities=12% Similarity=0.039 Sum_probs=77.1
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
+-++...|.|-..-|+-.+ + ...|-++|+.....-+..+.+.+. ..+..+.+-|.|. |+.-++.
T Consensus 173 devn~l~FHPre~ILiS~s--r------D~tvKlFDfsK~saKrA~K~~qd~-----~~vrsiSfHPsGefllvgTdH-- 237 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGS--R------DNTVKLFDFSKTSAKRAFKVFQDT-----EPVRSISFHPSGEFLLVGTDH-- 237 (430)
T ss_pred CcccceeecchhheEEecc--C------CCeEEEEecccHHHHHHHHHhhcc-----ceeeeEeecCCCceEEEecCC--
Confidence 3455667888766444322 2 234777887622111112333333 3456778999999 5544433
Q ss_pred CeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec---c
Q 004735 323 GFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD---I 398 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt---~ 398 (732)
. .+.++|..+-+.-.-. +.+. -......+... ..+.+|++...+|.-.|| | |-.-+.++ .
T Consensus 238 p--~~rlYdv~T~QcfvsanPd~q------ht~ai~~V~Ys----~t~~lYvTaSkDG~Iklw--D--GVS~rCv~t~~~ 301 (430)
T KOG0640|consen 238 P--TLRLYDVNTYQCFVSANPDDQ------HTGAITQVRYS----STGSLYVTASKDGAIKLW--D--GVSNRCVRTIGN 301 (430)
T ss_pred C--ceeEEeccceeEeeecCcccc------cccceeEEEec----CCccEEEEeccCCcEEee--c--cccHHHHHHHHh
Confidence 3 3444555553322111 1110 01112223333 567799999999988887 3 22223333 2
Q ss_pred C--CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 399 P--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 399 ~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
. ...|.+. ...+++ ++..++.+..-.||. +.++.
T Consensus 302 AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWE--i~t~R 338 (430)
T KOG0640|consen 302 AHGGSEVCSAVFTKNGK-YILSSGKDSTVKLWE--ISTGR 338 (430)
T ss_pred hcCCceeeeEEEccCCe-EEeecCCcceeeeee--ecCCc
Confidence 1 2234444 334444 444555554444444 44554
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.22 Score=52.40 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHH
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~ 592 (732)
.-+.+++++|..++.-++++|.|.|.|+||+-++.-+
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 4477899999998777789999999999999887654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.40 E-value=17 Score=34.87 Aligned_cols=144 Identities=10% Similarity=0.042 Sum_probs=78.0
Q ss_pred EEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 237 (732)
+.+-..+..++++|+.+| ...|++... ....+..+|..+.. +++...-+ ..+-.+|-.+.... +.
T Consensus 74 f~s~GgDk~v~vwDV~TG-kv~Rr~rgH----~aqVNtV~fNeesS-Vv~SgsfD--------~s~r~wDCRS~s~e-Pi 138 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTG-KVDRRFRGH----LAQVNTVRFNEESS-VVASGSFD--------SSVRLWDCRSRSFE-PI 138 (307)
T ss_pred cccCCCCceEEEEEcccC-eeeeecccc----cceeeEEEecCcce-EEEecccc--------ceeEEEEcccCCCC-cc
Confidence 334445668999999984 445666654 45667777877766 44443322 45666677664422 33
Q ss_pred Ecc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EE
Q 004735 238 VLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 315 (732)
Q Consensus 238 ~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~ 315 (732)
|+. +..+.+.....+ +.-|+--+ ....+..+|+. .|... . .... ..+....+|+||+ .+
T Consensus 139 Qildea~D~V~Si~v~--~heIvaGS--------~DGtvRtydiR-~G~l~--s--Dy~g----~pit~vs~s~d~nc~L 199 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVA--EHEIVAGS--------VDGTVRTYDIR-KGTLS--S--DYFG----HPITSVSFSKDGNCSL 199 (307)
T ss_pred chhhhhcCceeEEEec--ccEEEeec--------cCCcEEEEEee-cceee--h--hhcC----CcceeEEecCCCCEEE
Confidence 443 222223322222 22232222 12347777877 56431 1 1111 3466788999999 44
Q ss_pred EEEeccCCeeeEEEEeccCCeEEE
Q 004735 316 FVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
..+-. ..|.++|-++|+.-.
T Consensus 200 a~~l~----stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 200 ASSLD----STLRLLDKETGKLLK 219 (307)
T ss_pred Eeecc----ceeeecccchhHHHH
Confidence 44333 346678888887543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.35 E-value=20 Score=37.44 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=44.6
Q ss_pred ccCcCceeCCCCc-EEEEEecc---CC---------eeeEEEEeccC-Ce-EEEec-ccccccCCCceeecccceeeeee
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRK---NG---------FWNLHKWIESN-NE-VLAIY-SLDAEFSRPLWVFGINSYEIIQS 364 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~---~g---------~~~l~~~d~~~-g~-~~~l~-~~~~~~~~~~w~~~~~~~~~~~~ 364 (732)
.+...++++|||+ |+...... .+ ..+|+.+|+.+ ++ ..+.. +.+.. ....-..+..++.++
T Consensus 147 ~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~-~~~~~~~~isd~~al-- 223 (326)
T PF13449_consen 147 RGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPP-PTAPGDNGISDIAAL-- 223 (326)
T ss_pred CCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCcc-ccccCCCCceeEEEE--
Confidence 5677899999999 77665432 11 15688888876 31 22221 11100 000012234566676
Q ss_pred cCCCCEEEEEEEE-----CCEEEEEEEECCC
Q 004735 365 HGEKNLIACSYRQ-----NGRSYLGILDDFG 390 (732)
Q Consensus 365 ~~~~~~l~~~s~~-----~g~~~ly~~~~~~ 390 (732)
+++.|++.-.. ....+||.+++..
T Consensus 224 --~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 224 --PDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred --CCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 44444444332 2356788888654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.30 E-value=18 Score=36.01 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=64.6
Q ss_pred CeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCC
Q 004735 190 LVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 190 ~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
.....+.+||| ....+++.+++. .-++|-+..+ |... ++....-.+.....+||-||.++ |+..-
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~-------tVR~wevq~~-g~~~-~ka~~~~~~PvL~v~WsddgskV-f~g~~---- 92 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDG-------TVRIWEVQNS-GQLV-PKAQQSHDGPVLDVCWSDDGSKV-FSGGC---- 92 (347)
T ss_pred ccchheeEeccccCceEEecccCC-------ceEEEEEecC-Cccc-chhhhccCCCeEEEEEccCCceE-Eeecc----
Confidence 45667889999 444444566543 3566766554 2210 22222333344556899999866 45422
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc--EEEEEeccCCeeeEEEEeccC
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~--l~~~~~~~~g~~~l~~~d~~~ 334 (732)
..++-++|+. +|.+.. +...+ ..+....|-+... ++.+... ...|--+|...
T Consensus 93 ---Dk~~k~wDL~-S~Q~~~---v~~Hd----~pvkt~~wv~~~~~~cl~TGSW---DKTlKfWD~R~ 146 (347)
T KOG0647|consen 93 ---DKQAKLWDLA-SGQVSQ---VAAHD----APVKTCHWVPGMNYQCLVTGSW---DKTLKFWDTRS 146 (347)
T ss_pred ---CCceEEEEcc-CCCeee---eeecc----cceeEEEEecCCCcceeEeccc---ccceeecccCC
Confidence 2347888998 776532 33333 4556777866543 4443322 23455566544
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.38 Score=52.76 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=52.0
Q ss_pred CCCEEEEEeCCCCccChHHHHHHHHHHHhCC-C-------CEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHH
Q 004735 648 SCPIILFQGLEDKVVPPDQARKIYKALKENG-L-------PVALVEYEGEQHGFRKA-ENIKFTLEQQMVFFAR 712 (732)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g-~-------~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~fl~~ 712 (732)
--++|+.||..|..+++....++++++.+.- . -++|...||.+|....+ ...-+.+..+.+|.++
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 3689999999999999999999999987752 1 25899999999976443 3334778888888874
|
It also includes several bacterial homologues of unknown function. |
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.74 Score=42.01 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
..+...++....+ ....+|.+.|||+||.+|..++.
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~ 47 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGL 47 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHH
Confidence 3344444444433 23579999999999999988876
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=89.87 E-value=12 Score=37.43 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=84.1
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCC--------------CCCCccEEEEEEecCCCce
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPN--------------MPWDKAELWVGYISENGDV 286 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~--------------~~~~~~~l~v~d~~~~g~~ 286 (732)
..||...+-+.. + +++.+.++...|+-| .|+|-.|-+.- +-+.-+.|+.+|++ ++++
T Consensus 20 ~~iY~felvG~~---P---~SGGDTYNAV~~vDd--~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e-~~~V 90 (339)
T PF09910_consen 20 EKIYRFELVGPP---P---TSGGDTYNAVEWVDD--FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTE-NDSV 90 (339)
T ss_pred eEEEEeeeccCC---C---CCCCccceeeeeecc--eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcC-CCeE
Confidence 567776665433 2 234444555555532 35555543321 11234678999988 6765
Q ss_pred eeeE--EecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeee
Q 004735 287 YKRV--CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ 363 (732)
Q Consensus 287 ~~~~--~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~ 363 (732)
+-+- -... ...|.+-++++-..|=.. |++...++.-+--||.+|..+|+.+.|.....--. ..+
T Consensus 91 rLLWkesih~-~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~KG----------~~~-- 157 (339)
T PF09910_consen 91 RLLWKESIHD-KTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLKG----------TLV-- 157 (339)
T ss_pred EEEEecccCC-ccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcCc----------eEe--
Confidence 3211 1112 226777888888888666 77776652334457889999999999985431111 011
Q ss_pred ecCCCCEEEEEEE--ECCEEEEEEEECCCCce
Q 004735 364 SHGEKNLIACSYR--QNGRSYLGILDDFGHSL 393 (732)
Q Consensus 364 ~~~~~~~l~~~s~--~~g~~~ly~~~~~~~~~ 393 (732)
. +..+|... ..|...|..+|+.++++
T Consensus 158 ---~-D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 158 ---H-DYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred ---e-eeEEEeccccccCCceEEEEEccCCeE
Confidence 1 12333331 23556788889988887
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.84 E-value=3.5 Score=41.17 Aligned_cols=112 Identities=15% Similarity=0.082 Sum_probs=71.1
Q ss_pred CCceeEEE--CCEEEEEeCCCCeEEEEeCCCCCCCc---eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCce
Q 004735 146 GGGAFRIF--GDTVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST 220 (732)
Q Consensus 146 g~~~~~~~--~~~i~f~~~~~~~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 220 (732)
|..++.+. ...|+|.....|+|-++|+.. .+. ..+... .....-.+.+-+|..|+-.+...
T Consensus 138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~--~~~~~p~~I~AH----~s~Iacv~Ln~~Gt~vATaStkG-------- 203 (346)
T KOG2111|consen 138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS--TKPNAPSIINAH----DSDIACVALNLQGTLVATASTKG-------- 203 (346)
T ss_pred ceEeecCCCCceEEEcCCCccceEEEEEhhh--cCcCCceEEEcc----cCceeEEEEcCCccEEEEeccCc--------
Confidence 34444443 236888887889999999975 333 333322 23345567889999865544422
Q ss_pred eEEEEEEcCCCCccccEEcccCC--CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 281 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~--~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~ 281 (732)
.=|-++|..+|+. ...+-.|. ......+||||+++||..+ +...|+++.+.
T Consensus 204 TLIRIFdt~~g~~--l~E~RRG~d~A~iy~iaFSp~~s~LavsS--------dKgTlHiF~l~ 256 (346)
T KOG2111|consen 204 TLIRIFDTEDGTL--LQELRRGVDRADIYCIAFSPNSSWLAVSS--------DKGTLHIFSLR 256 (346)
T ss_pred EEEEEEEcCCCcE--eeeeecCCchheEEEEEeCCCccEEEEEc--------CCCeEEEEEee
Confidence 4455668877761 23333333 2345689999999999877 45669999887
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.78 E-value=23 Score=35.25 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=61.1
Q ss_pred ccccCCcee--EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCC--CEEEEEEeccCCCCC
Q 004735 142 AQEYGGGAF--RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF--NRYVTVREDRRQDAL 217 (732)
Q Consensus 142 ~~~~g~~~~--~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~~~~ 217 (732)
.|.|++... .+-+..++.+...+..|-++|..+- .+....+-. +.-| .-+|||-. .-|+++..+.
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl-Q~a~~F~me----~~VY-shamSp~a~sHcLiA~gtr~----- 167 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL-QEAVDFKME----GKVY-SHAMSPMAMSHCLIAAGTRD----- 167 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccc-eeeEEeecC----ceee-hhhcChhhhcceEEEEecCC-----
Confidence 456666543 3345566666666777888998761 222222221 2222 33578843 3444544433
Q ss_pred CceeEEEEEEcCCCCccccEE-cccCCCceeccccCCCCCeEEEEec
Q 004735 218 NSTTEIVAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEW 263 (732)
Q Consensus 218 ~~~~~l~~~d~~~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~ 263 (732)
.++-+-|+++|. -.- |....+.+....|||...++.+...
T Consensus 168 ---~~VrLCDi~SGs---~sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 168 ---VQVRLCDIASGS---FSHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred ---CcEEEEeccCCc---ceeeeccccCceEEEEeccCceeEEEecC
Confidence 456666999887 443 4444455667899999999988763
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.64 E-value=20 Score=34.49 Aligned_cols=138 Identities=13% Similarity=0.168 Sum_probs=66.1
Q ss_pred eccccCCCCCeEEEEe-ccCCCC--CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 247 AFPRMDPRGERMAWIE-WHHPNM--PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~-~~~~~~--~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
+.-..+||||+ |.. +.+.+. ..-...||+.-+ ++++ .++-+.- .-...+.|+.|-+ +||+ +.
T Consensus 112 NDgkvdP~Gry--y~GtMad~~~~le~~~g~Ly~~~~--~h~v---~~i~~~v----~IsNgl~Wd~d~K~fY~i-Ds-- 177 (310)
T KOG4499|consen 112 NDGKVDPDGRY--YGGTMADFGDDLEPIGGELYSWLA--GHQV---ELIWNCV----GISNGLAWDSDAKKFYYI-DS-- 177 (310)
T ss_pred ccCccCCCCce--eeeeeccccccccccccEEEEecc--CCCc---eeeehhc----cCCccccccccCcEEEEE-cc--
Confidence 34567999997 332 222221 112455776543 3443 2222221 3345789999988 5554 33
Q ss_pred CeeeE--EEEeccCCeE---EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEe
Q 004735 323 GFWNL--HKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLL 396 (732)
Q Consensus 323 g~~~l--~~~d~~~g~~---~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~l 396 (732)
-...+ |-+|..+|.. +.|...+.. .|.=++....+..- ..+.||++.. +| ..++.+|+.+|++ ..+
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~--~~~e~~~PDGm~ID----~eG~L~Va~~-ng-~~V~~~dp~tGK~L~ei 249 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKS--QPFESLEPDGMTID----TEGNLYVATF-NG-GTVQKVDPTTGKILLEI 249 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccC--CCcCCCCCCcceEc----cCCcEEEEEe-cC-cEEEEECCCCCcEEEEE
Confidence 33455 6666777742 333322110 11001111112221 2233444433 22 4688889988874 344
Q ss_pred ccCCCceEEe
Q 004735 397 DIPFTDIDNI 406 (732)
Q Consensus 397 t~~~~~v~~~ 406 (732)
..+...++.+
T Consensus 250 klPt~qitsc 259 (310)
T KOG4499|consen 250 KLPTPQITSC 259 (310)
T ss_pred EcCCCceEEE
Confidence 4454455555
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.59 E-value=16 Score=39.61 Aligned_cols=194 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
+....||||++++++..-.+ +|-++|++.-. ..-=- -+.+.+...-.|-|=.+++|+..++.-
T Consensus 55 t~ik~s~DGqY~lAtG~YKP--------~ikvydlanLS---LKFERhlDae~V~feiLsDD~SK~v~L~~DR~I----- 118 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTYKP--------QIKVYDLANLS---LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTI----- 118 (703)
T ss_pred ceeEecCCCcEEEEecccCC--------ceEEEEcccce---eeeeecccccceeEEEeccchhhheEeecCcee-----
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCce
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 352 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 352 (732)
++..-+.......++... .....-.|+.| ||+.... ..||+++++.|..-.-..-. ....|
T Consensus 119 ------efHak~G~hy~~RIP~~G----RDm~y~~~scD--ly~~gsg----~evYRlNLEqGrfL~P~~~~---~~~lN 179 (703)
T KOG2321|consen 119 ------EFHAKYGRHYRTRIPKFG----RDMKYHKPSCD--LYLVGSG----SEVYRLNLEQGRFLNPFETD---SGELN 179 (703)
T ss_pred ------eehhhcCeeeeeecCcCC----ccccccCCCcc--EEEeecC----cceEEEEccccccccccccc---cccce
Q ss_pred eecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCc------------eEEe-eEeCCEEEEEEeC
Q 004735 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD------------IDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~------------v~~~-~~~~~~~~~~~~~ 419 (732)
+.+.+ .-+.|+.....+|....| |+.++...-.-.-... |+.+ ..+++--+.++++
T Consensus 180 ~v~in---------~~hgLla~Gt~~g~VEfw--DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 180 VVSIN---------EEHGLLACGTEDGVVEFW--DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred eeeec---------CccceEEecccCceEEEe--cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc
Q ss_pred CCCCcEEEEEEcCCCcc
Q 004735 420 GVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 420 ~~~~~~ly~~dl~~~~~ 436 (732)
.. .+|.+||.+.++
T Consensus 249 ~G---~v~iyDLRa~~p 262 (703)
T KOG2321|consen 249 TG---SVLIYDLRASKP 262 (703)
T ss_pred CC---cEEEEEcccCCc
|
|
| >PLN02633 palmitoyl protein thioesterase family protein | Back alignment and domain information |
|---|
Probab=89.46 E-value=1.9 Score=43.54 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
+.|+ |+.||.+...+........+.+.+. |.-+.++.. |.+ .-.+|.. ..-+.+..+.+.+.+....
T Consensus 25 ~~P~-ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i-g~~-~~~s~~~--------~~~~Qve~vce~l~~~~~l- 92 (314)
T PLN02633 25 SVPF-IMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI-GNG-VGDSWLM--------PLTQQAEIACEKVKQMKEL- 92 (314)
T ss_pred CCCe-EEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE-CCC-cccccee--------CHHHHHHHHHHHHhhchhh-
Confidence 4454 5579976666555666667767554 777766665 221 1111111 1123333444444443222
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCC--cceEEEeecC
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYG 606 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~~~ 606 (732)
.+-+-++|+|.||.++=.++. .|+ .++-.|.+++
T Consensus 93 ~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 93 SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 346999999999999988877 554 4777776553
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=89.27 E-value=11 Score=41.22 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=75.0
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc----
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV---- 240 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt---- 240 (732)
+|.++...+ ++.+.|..--- ....-+..||- +..+ +++.+..-..+....-+-.+++...++ .+++.
T Consensus 185 Nl~L~~~~~--~klEvL~yirT--E~dPl~~~Fs~~~~~q-i~tVE~s~s~~g~~~~d~ciYE~~r~k---lqrvsvtsi 256 (545)
T PF11768_consen 185 NLHLLSCSG--GKLEVLSYIRT--ENDPLDVEFSLNQPYQ-IHTVEQSISVKGEPSADSCIYECSRNK---LQRVSVTSI 256 (545)
T ss_pred cEEEEEecC--CcEEEEEEEEe--cCCcEEEEccCCCCcE-EEEEEEecCCCCCceeEEEEEEeecCc---eeEEEEEEE
Confidence 577777765 55555543100 00113345666 4444 444443211111123344445555555 44332
Q ss_pred cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEec
Q 004735 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 241 ~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~ 320 (732)
.-.......++||+.++++.-- ..+.|.++|.. .+.. ...... .-+..++|.|||.++++.+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC--------~DgSiiLyD~~-~~~t----~~~ka~----~~P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGC--------EDGSIILYDTT-RGVT----LLAKAE----FIPTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred ecCCcceEEecCcccceEEEEe--------cCCeEEEEEcC-CCee----eeeeec----ccceEEEEcCCCcEEEEEcC
Confidence 1123344568999999998765 23448899976 4432 222222 34567899999997777766
Q ss_pred cCCeeeEEEEec
Q 004735 321 KNGFWNLHKWIE 332 (732)
Q Consensus 321 ~~g~~~l~~~d~ 332 (732)
+|.-++|=+.+
T Consensus 320 -qGelQ~FD~AL 330 (545)
T PF11768_consen 320 -QGELQCFDMAL 330 (545)
T ss_pred -CceEEEEEeec
Confidence 67666554333
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.23 E-value=5.3 Score=41.20 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=56.0
Q ss_pred ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec------CCC-----c--eeeeEEecCCCCCccccCcCc
Q 004735 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS------ENG-----D--VYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 240 t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~------~~g-----~--~~~~~~~~~~~~~~~~~~~~~ 306 (732)
+.....++..+|||+|..||-.. + ..+++++-.. .+. + ....+.+.+.. ..+...
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~-D-------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~----~diydL 129 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGG-D-------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR----DDIYDL 129 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecC-C-------CceEEEEEecCcCCccccchhhhCccceEEEEEecccc----cchhhh
Confidence 33444566788999999776433 2 2223322211 011 1 11223344333 456789
Q ss_pred eeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecc
Q 004735 307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGI 356 (732)
Q Consensus 307 ~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~ 356 (732)
+|+||+. +.+.+-+ ..++.+|+..|+...+..+ ........|.+..
T Consensus 130 ~Ws~d~~~l~s~s~d----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 130 AWSPDSNFLVSGSVD----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN 177 (434)
T ss_pred hccCCCceeeeeecc----ceEEEEEeccceeEeeccccccccceeecchhh
Confidence 9999998 5544333 4567788888887776633 3344556677643
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.13 E-value=38 Score=37.93 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=30.8
Q ss_pred EEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 382 YLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 382 ~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
.||+++....++..-.....++.+++..++.++++..+. .|+.+.+.+
T Consensus 307 Giyv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d~----~l~~~sv~s 354 (726)
T KOG3621|consen 307 GIYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLDR----GLKVESVAS 354 (726)
T ss_pred eEEEEEeccceEEEeecCCCceeEEeecCceEEEEecCC----ceeEEEeeh
Confidence 499999877666555556677777777777777666533 344444443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.08 E-value=33 Score=36.24 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=78.1
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.|++.+..-+++...+|.|-..|+++ ...+. ++... ....+.+..++.+..-++|... ...+-++|
T Consensus 241 ~F~P~n~s~i~ssSyDGtiR~~D~~~--~i~e~v~s~~~--d~~~fs~~d~~~e~~~vl~~~~---------~G~f~~iD 307 (498)
T KOG4328|consen 241 KFSPANTSQIYSSSYDGTIRLQDFEG--NISEEVLSLDT--DNIWFSSLDFSAESRSVLFGDN---------VGNFNVID 307 (498)
T ss_pred EecCCChhheeeeccCceeeeeeecc--hhhHHHhhcCc--cceeeeeccccCCCccEEEeec---------ccceEEEE
Confidence 35555555566666788888999986 43333 33221 1345566678877776666533 13455566
Q ss_pred cCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC-CCceee-eEEecCCCCCccccCcC
Q 004735 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYK-RVCVAGFDPTIVESPTE 305 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~-~g~~~~-~~~~~~~~~~~~~~~~~ 305 (732)
+.++..+ ...+.-....+....+.|--.++.-+...+ ..+.++|+.. .++... +..+... ..+..
T Consensus 308 ~R~~~s~-~~~~~lh~kKI~sv~~NP~~p~~laT~s~D-------~T~kIWD~R~l~~K~sp~lst~~Hr-----rsV~s 374 (498)
T KOG4328|consen 308 LRTDGSE-YENLRLHKKKITSVALNPVCPWFLATASLD-------QTAKIWDLRQLRGKASPFLSTLPHR-----RSVNS 374 (498)
T ss_pred eecCCcc-chhhhhhhcccceeecCCCCchheeecccC-------cceeeeehhhhcCCCCcceeccccc-----ceeee
Confidence 6554310 223332233566677788666654443222 2245667652 122211 1122222 67888
Q ss_pred ceeCCCCc-EEEEEec
Q 004735 306 PKWSSKGE-LFFVTDR 320 (732)
Q Consensus 306 ~~wspDg~-l~~~~~~ 320 (732)
..|||+|- |+.+..+
T Consensus 375 AyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 375 AYFSPSGGTLLTTCQD 390 (498)
T ss_pred eEEcCCCCceEeeccC
Confidence 99999977 6655443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=89.05 E-value=9.3 Score=39.46 Aligned_cols=158 Identities=9% Similarity=0.051 Sum_probs=77.6
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
.+..||+|+.||... .. .+.+++++..+.+ .+-+...... .......+..+..-..+.+..++-.+
T Consensus 67 ~~~~s~~~~llAv~~-~~-------K~~~~f~~~~~~~~~kl~~~~~v~-----~~~~ai~~~~~~~sv~v~dkagD~~~ 133 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVAT-SS-------KQRAVFDYRENPKGAKLLDVSCVP-----KRPTAISFIREDTSVLVADKAGDVYS 133 (390)
T ss_pred ccccCCCceEEEEEe-CC-------CceEEEEEecCCCcceeeeEeecc-----cCcceeeeeeccceEEEEeecCCcee
Confidence 456677877665443 22 2356666652222 1111211111 12234444445442223333233445
Q ss_pred EEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC-CceEE
Q 004735 327 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF-TDIDN 405 (732)
Q Consensus 327 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~-~~v~~ 405 (732)
+..+....+..+.+...-.-..+..|++ |+ .++.+++++..-++-.++ +.-.....-.+. .-|..
T Consensus 134 ~di~s~~~~~~~~~lGhvSml~dVavS~------------D~-~~IitaDRDEkIRvs~yp-a~f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 134 FDILSADSGRCEPILGHVSMLLDVAVSP------------DD-QFIITADRDEKIRVSRYP-ATFVIESFCLGHKEFVST 199 (390)
T ss_pred eeeecccccCcchhhhhhhhhheeeecC------------CC-CEEEEecCCceEEEEecC-cccchhhhccccHhheee
Confidence 5555555466665553332333444543 44 677788888877766664 222233222222 22555
Q ss_pred eeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 406 ITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+..-+++.++.+++. ..|+++|..+|+
T Consensus 200 isl~~~~~LlS~sGD---~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 200 ISLTDNYLLLSGSGD---KTLRLWDITSGK 226 (390)
T ss_pred eeeccCceeeecCCC---CcEEEEecccCC
Confidence 544445555444433 478888888876
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=88.92 E-value=5.7 Score=40.12 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=66.8
Q ss_pred CCCCcCCHHHHhccCCccCceEEcCCCcEEE-EeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccccccc-CCceeE
Q 004735 74 SWKSPLTADVVSGASKRLGGTAVDGHGRLIW-LESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEY-GGGAFR 151 (732)
Q Consensus 74 ~~~~~~~~~~i~~~~~~~~~~~~~pg~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~-g~~~~~ 151 (732)
.|+.|.-.+..-.+.+.+.+++.. ++...| +.....+.. .-||-....||-...+... +..+.+. -.-+--
T Consensus 137 ~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~--~gWR~~~~~gG~vidv~s~----evl~~GLsmPhSPR 209 (335)
T TIGR03032 137 LWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVA--DGWREGRRDGGCVIDIPSG----EVVASGLSMPHSPR 209 (335)
T ss_pred ccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCc--ccccccccCCeEEEEeCCC----CEEEcCccCCcCCc
Confidence 577775555555556778888887 444444 333222111 2366554444322222111 1111000 011122
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEe
Q 004735 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE 210 (732)
Q Consensus 152 ~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~ 210 (732)
|-+++++|.+...+.|+.+|.++ |+.+.+..-++. .....|. |+.++..+.
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~--G~~e~Va~vpG~----~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQA--GKFQPVAFLPGF----TRGLAFA--GDFAFVGLS 260 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCC--CcEEEEEECCCC----Cccccee--CCEEEEEec
Confidence 45778999999999999999987 777777765332 2555676 887554443
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=88.79 E-value=14 Score=36.61 Aligned_cols=159 Identities=10% Similarity=-0.039 Sum_probs=0.0
Q ss_pred eEE-ECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 150 FRI-FGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 150 ~~~-~~~~i~f~~~~~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+.. .++.++-+....+ .|..+|+++ ++..+-..- +.++..=-...-+.+|+-..+.. ...+++
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~t--g~~~~~~~l----~~~~FgEGit~~~d~l~qLTWk~--------~~~f~y 115 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLET--GKVLQSVPL----PPRYFGEGITILGDKLYQLTWKE--------GTGFVY 115 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTT--SSEEEEEE-----TTT--EEEEEEETTEEEEEESSS--------SEEEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCC--CcEEEEEEC----CccccceeEEEECCEEEEEEecC--------CeEEEE
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|.++-+ ...-..-...--+.+ .||+.|+... ...+|+..|.+ +-+......+.... .....+..+
T Consensus 116 d~~tl~---~~~~~~y~~EGWGLt--~dg~~Li~SD--------GS~~L~~~dP~-~f~~~~~i~V~~~g-~pv~~LNEL 180 (264)
T PF05096_consen 116 DPNTLK---KIGTFPYPGEGWGLT--SDGKRLIMSD--------GSSRLYFLDPE-TFKEVRTIQVTDNG-RPVSNLNEL 180 (264)
T ss_dssp ETTTTE---EEEEEE-SSS--EEE--ECSSCEEEE---------SSSEEEEE-TT-T-SEEEEEE-EETT-EE---EEEE
T ss_pred ccccce---EEEEEecCCcceEEE--cCCCEEEEEC--------CccceEEECCc-ccceEEEEEEEECC-EECCCcEeE
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
.|- ||.||..-.. ...|.++|+++|++..+.
T Consensus 181 E~i-~G~IyANVW~---td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 181 EYI-NGKIYANVWQ---TDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEE-TTEEEEEETT---SSEEEEEETTT-BEEEEE
T ss_pred EEE-cCEEEEEeCC---CCeEEEEeCCCCeEEEEE
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.74 E-value=5.7 Score=44.17 Aligned_cols=115 Identities=12% Similarity=0.149 Sum_probs=67.8
Q ss_pred cccCCCCCeEEEEeccCCC------------CCCCccEEEEEEecCCC----ceeeeE--EecCC------------CCC
Q 004735 249 PRMDPRGERMAWIEWHHPN------------MPWDKAELWVGYISENG----DVYKRV--CVAGF------------DPT 298 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~------------~~~~~~~l~v~d~~~~g----~~~~~~--~~~~~------------~~~ 298 (732)
..++|+...|++...+... ..+...+||.++.+ .+ ....+. ++.+. +..
T Consensus 355 i~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~-~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~ 433 (524)
T PF05787_consen 355 ITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPD-GNDHAATTFTWELFLVGGDPTDASGNGSNKCDDN 433 (524)
T ss_pred eeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEeccc-CCccccceeEEEEEEEecCcccccccccCcccCC
Confidence 3567877788877654441 12345688888876 33 111111 22221 113
Q ss_pred ccccCcCceeCCCCcEEEEEeccCCeee--------------------EEEEeccCCeEEEec--ccccccCCCceeecc
Q 004735 299 IVESPTEPKWSSKGELFFVTDRKNGFWN--------------------LHKWIESNNEVLAIY--SLDAEFSRPLWVFGI 356 (732)
Q Consensus 299 ~~~~~~~~~wspDg~l~~~~~~~~g~~~--------------------l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~ 356 (732)
+..++..+.++++|+|++..+......+ ++..++..++.+++. +...++.++.|++
T Consensus 434 ~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp-- 511 (524)
T PF05787_consen 434 GFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSP-- 511 (524)
T ss_pred CcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECC--
Confidence 3356678889999997777765222111 334456677777766 4566788888886
Q ss_pred cceeeeeecCCCCEEEEEEE
Q 004735 357 NSYEIIQSHGEKNLIACSYR 376 (732)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~s~ 376 (732)
|++.|++...
T Consensus 512 ----------Dg~tlFvniQ 521 (524)
T PF05787_consen 512 ----------DGRTLFVNIQ 521 (524)
T ss_pred ----------CCCEEEEEEe
Confidence 7777776543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.61 E-value=38 Score=36.25 Aligned_cols=166 Identities=9% Similarity=0.033 Sum_probs=89.0
Q ss_pred ecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC-ceeccccCCCCCeEEEEeccCCCCCCCccEEE
Q 004735 198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 276 (732)
Q Consensus 198 ~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~ 276 (732)
+.-...+|+.++. -.+|.+..+.++.. .+.++.+.+ .+...++||--+.|.-+..+ ++.+.
T Consensus 129 YN~~DeyiAsvs~---------gGdiiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~lL~~asd-------~G~Vt 190 (673)
T KOG4378|consen 129 YNNTDEYIASVSD---------GGDIIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRFLLSIASD-------KGAVT 190 (673)
T ss_pred ecCCcceeEEecc---------CCcEEEEecccCcc--ccceecCCCCeEEEeecccccceeeEeecc-------CCeEE
Confidence 4445566666654 25788888887652 344554433 34467899998888766533 34488
Q ss_pred EEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCe-EEEecccccccCCCceee
Q 004735 277 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 277 v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~ 354 (732)
++|+. +-.. ......... .-...++++|-.. |++.-.. ...|+.+|....+ ...|+.+ .|
T Consensus 191 lwDv~-g~sp-~~~~~~~Hs----AP~~gicfspsne~l~vsVG~---Dkki~~yD~~s~~s~~~l~y~-----~P---- 252 (673)
T KOG4378|consen 191 LWDVQ-GMSP-IFHASEAHS----APCRGICFSPSNEALLVSVGY---DKKINIYDIRSQASTDRLTYS-----HP---- 252 (673)
T ss_pred EEecc-CCCc-ccchhhhcc----CCcCcceecCCccceEEEecc---cceEEEeecccccccceeeec-----CC----
Confidence 88886 2211 011111111 2345789999877 4443322 3568888876533 2234321 11
Q ss_pred cccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc--eEEeccCCCceEEe
Q 004735 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS--LSLLDIPFTDIDNI 406 (732)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~--~~~lt~~~~~v~~~ 406 (732)
...+.|. +.+.++...... ..||.||+.+.+ +..+...+..|..+
T Consensus 253 -lstvaf~----~~G~~L~aG~s~--G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 253 -LSTVAFS----ECGTYLCAGNSK--GELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred -cceeeec----CCceEEEeecCC--ceEEEEecccCCCCceEeeecccceeEE
Confidence 2234555 455555444433 467777876543 23333334445444
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=88.57 E-value=47 Score=37.28 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=45.5
Q ss_pred ceeecCCCCEEEEEEeccC-------CCCCCceeEEEEEEcCCCCccccEEcccCCCc----eeccc---cCCCCC--eE
Q 004735 195 DGIFDPRFNRYVTVREDRR-------QDALNSTTEIVAIALNGQNIQEPKVLVSGSDF----YAFPR---MDPRGE--RM 258 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~-------~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~----~~~p~---~SPDG~--~l 258 (732)
.++++|+-..|++-..+.. ..++.+...|+.+|+++|+....-|.+..... ...|. +--||+ .+
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~ 317 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL 317 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence 3467777776555443311 11223367899999999983222344433321 12332 225777 34
Q ss_pred EEEeccCCCCCCCccEEEEEEecCCCce
Q 004735 259 AWIEWHHPNMPWDKAELWVGYISENGDV 286 (732)
Q Consensus 259 a~~~~~~~~~~~~~~~l~v~d~~~~g~~ 286 (732)
+... .. ...+|++|.. +|++
T Consensus 318 v~~~-~K------~G~~~vlDr~-tG~~ 337 (527)
T TIGR03075 318 LAHA-DR------NGFFYVLDRT-NGKL 337 (527)
T ss_pred EEEe-CC------CceEEEEECC-CCce
Confidence 3332 22 3458999987 7875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.32 E-value=3 Score=46.16 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=69.4
Q ss_pred eecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccE
Q 004735 197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (732)
Q Consensus 197 ~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~ 274 (732)
.++..++++++-.. ..-||+.+..++. .+.+.. .......-..|++...+|+.. ....
T Consensus 40 c~dst~~~l~~GsS---------~G~lyl~~R~~~~---~~~~~~~~~~~~~~~~~vs~~e~lvAagt--------~~g~ 99 (726)
T KOG3621|consen 40 CVDATEEYLAMGSS---------AGSVYLYNRHTGE---MRKLKNEGATGITCVRSVSSVEYLVAAGT--------ASGR 99 (726)
T ss_pred EeecCCceEEEecc---------cceEEEEecCchh---hhcccccCccceEEEEEecchhHhhhhhc--------CCce
Confidence 45666777666544 3689999988887 555554 233344456788877666554 3455
Q ss_pred EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEec
Q 004735 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 275 l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~ 332 (732)
+.++-+. .+.......++..+..-...+.-..||+||.-+|..+. +|.-.+.++|.
T Consensus 100 V~v~ql~-~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s 155 (726)
T KOG3621|consen 100 VSVFQLN-KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS-QGKVVLTELDS 155 (726)
T ss_pred EEeehhh-ccCCCcceeeccccccCCceEEEEEecccccEEeecCC-CceEEEEEech
Confidence 6666665 33222233333332100145677899999996667777 78777777665
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.18 E-value=25 Score=38.29 Aligned_cols=143 Identities=8% Similarity=0.040 Sum_probs=79.1
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
++......+.++++++.+ ++. ..++.+. .........++.+- .++|..... ..+..++...+.
T Consensus 72 ~lvlgt~~g~v~~ys~~~--g~it~~~st~~--h~~~v~~~~~~~~~-~ciyS~~ad--------~~v~~~~~~~~~--- 135 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAG--GEITAKLSTDK--HYGNVNEILDAQRL-GCIYSVGAD--------LKVVYILEKEKV--- 135 (541)
T ss_pred EEEeecCCccEEEEEecC--CeEEEEEecCC--CCCcceeeeccccc-CceEecCCc--------eeEEEEecccce---
Confidence 333444456899999987 443 3444321 11122222233332 345554432 567777777666
Q ss_pred cEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC--C
Q 004735 236 PKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK--G 312 (732)
Q Consensus 236 ~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD--g 312 (732)
..++. .....+...+.||||+.|+-.+ .+|-++|++ ++++ +..+++.. .-+....+.-+ |
T Consensus 136 ~~~~~~~~~~~~~sl~is~D~~~l~~as----------~~ik~~~~~-~kev--v~~ftgh~----s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISPDGKILLTAS----------RQIKVLDIE-TKEV--VITFTGHG----SPVRTLSFTTLIDG 198 (541)
T ss_pred eeeeeccCCCccceEEEcCCCCEEEecc----------ceEEEEEcc-CceE--EEEecCCC----cceEEEEEEEeccc
Confidence 44544 3344567789999999886433 448999998 7776 67777775 44445555433 3
Q ss_pred c--EEEEEecc-CCeeeEEEEec
Q 004735 313 E--LFFVTDRK-NGFWNLHKWIE 332 (732)
Q Consensus 313 ~--l~~~~~~~-~g~~~l~~~d~ 332 (732)
- .+|.+... .....++.++-
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccceeeeccccccceeEEEEEc
Confidence 2 34444331 22334555554
|
|
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=88.11 E-value=11 Score=37.56 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=67.0
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE--EEEEEECCCCceEEeccC
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS--YLGILDDFGHSLSLLDIP 399 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~--~ly~~~~~~~~~~~lt~~ 399 (732)
+.+.+|..+|.++++++.|-.+.... .-.|.-..+++..-| -++.|+++. .||.. -||.++..+|+.++|...
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesih~-~~~WaGEVSdIlYdP---~~D~LLlAR-~DGh~nLGvy~ldr~~g~~~~L~~~ 149 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESIHD-KTKWAGEVSDILYDP---YEDRLLLAR-ADGHANLGVYSLDRRTGKAEKLSSN 149 (339)
T ss_pred eccceEEEEEcCCCeEEEEEecccCC-ccccccchhheeeCC---CcCEEEEEe-cCCcceeeeEEEcccCCceeeccCC
Confidence 45678999999999999998765443 346765555554432 345566554 45654 488889999999998764
Q ss_pred CCceEEeeEeCCEEEEEEeC--CCCCcEEEEEEcCCCcc
Q 004735 400 FTDIDNITLGNDCLFVEGAS--GVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 400 ~~~v~~~~~~~~~~~~~~~~--~~~~~~ly~~dl~~~~~ 436 (732)
..--..+..+ ..|+.-+ ..+...|..+|+.+++.
T Consensus 150 ps~KG~~~~D---~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 150 PSLKGTLVHD---YACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred CCcCceEeee---eEEEeccccccCCceEEEEEccCCeE
Confidence 3221111211 1222222 23345699999998885
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.11 E-value=20 Score=35.97 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=90.6
Q ss_pred EEeCCCCeEEEEeCCCCCC-CceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE
Q 004735 159 FSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (732)
Q Consensus 159 f~~~~~~~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 237 (732)
.+...+++|.+++... = ...-+... .-+.++.+.+|.|+.-+.|..+ ..|-.+++-.|+...+.
T Consensus 101 lS~sdDG~i~iw~~~~--W~~~~slK~H----~~~Vt~lsiHPS~KLALsVg~D---------~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 101 LSGSDDGHIIIWRVGS--WELLKSLKAH----KGQVTDLSIHPSGKLALSVGGD---------QVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eeecCCCcEEEEEcCC--eEEeeeeccc----ccccceeEecCCCceEEEEcCC---------ceeeeehhhcCccceee
Confidence 3445677788887653 1 11112222 3347888999999965555442 35666677766621122
Q ss_pred EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEE
Q 004735 238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (732)
Q Consensus 238 ~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~ 317 (732)
.|-.. .....|+|.|.+.+.+..+ .|-++.++ +..+ ...+... .......|...+.|+ +
T Consensus 166 ~L~~~---at~v~w~~~Gd~F~v~~~~---------~i~i~q~d-~A~v--~~~i~~~-----~r~l~~~~l~~~~L~-v 224 (362)
T KOG0294|consen 166 NLKNK---ATLVSWSPQGDHFVVSGRN---------KIDIYQLD-NASV--FREIENP-----KRILCATFLDGSELL-V 224 (362)
T ss_pred ccCCc---ceeeEEcCCCCEEEEEecc---------EEEEEecc-cHhH--hhhhhcc-----ccceeeeecCCceEE-E
Confidence 33222 2337899999988766522 24444444 2222 1111111 112233343333243 3
Q ss_pred EeccCCeeeEEEEeccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 318 TDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 318 ~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
..+ + ..+-..|-+.+..- .++..+.. ..++.+..+ +...++.+...+|.-.+|-++.++++
T Consensus 225 G~d-~--~~i~~~D~ds~~~~~~~~AH~~R---------VK~i~~~~~--~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 225 GGD-N--EWISLKDTDSDTPLTEFLAHENR---------VKDIASYTN--PEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred ecC-C--ceEEEeccCCCccceeeecchhh---------eeeeEEEec--CCceEEEEeccCceEEEEEccccccC
Confidence 322 2 33444555442211 11111111 122222211 34567778888999999988877654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.02 E-value=5.8 Score=41.63 Aligned_cols=157 Identities=15% Similarity=0.059 Sum_probs=81.4
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCee
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~ 325 (732)
+....-+|+|.+|+--. -...||++.+. +|.+ +..+...- +.+.-..++.||..+|++.. .|.-
T Consensus 84 v~al~s~n~G~~l~ag~--------i~g~lYlWels-sG~L--L~v~~aHY----Q~ITcL~fs~dgs~iiTgsk-Dg~V 147 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGT--------ISGNLYLWELS-SGIL--LNVLSAHY----QSITCLKFSDDGSHIITGSK-DGAV 147 (476)
T ss_pred eeeeecCCCceEEEeec--------ccCcEEEEEec-cccH--HHHHHhhc----cceeEEEEeCCCcEEEecCC-CccE
Confidence 44456689998775331 13349999999 8976 44444443 56778889999986666655 5655
Q ss_pred eEEEE----eccCC-eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEeccC
Q 004735 326 NLHKW----IESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIP 399 (732)
Q Consensus 326 ~l~~~----d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~ 399 (732)
.+|.+ +.+.. ....+-. +..-. ....++..-. +.-+.-++++..|..-.+|-+. .|.+ ..++.
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~----f~~Ht--lsITDl~ig~--Gg~~~rl~TaS~D~t~k~wdlS--~g~LLlti~f- 216 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHI----FSDHT--LSITDLQIGS--GGTNARLYTASEDRTIKLWDLS--LGVLLLTITF- 216 (476)
T ss_pred EEEEEEeecccccCCCccceee----eccCc--ceeEEEEecC--CCccceEEEecCCceEEEEEec--cceeeEEEec-
Confidence 55522 22211 1111110 00000 0111222210 0112344555566667777554 4443 23333
Q ss_pred CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcC
Q 004735 400 FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 432 (732)
Q Consensus 400 ~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~ 432 (732)
+..+..+ .++..+.+|++++.. .+|..++.
T Consensus 217 p~si~av~lDpae~~~yiGt~~G---~I~~~~~~ 247 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEG---KIFQNLLF 247 (476)
T ss_pred CCcceeEEEcccccEEEecCCcc---eEEeeehh
Confidence 3345555 456677777777654 45555443
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=87.86 E-value=1.4 Score=35.68 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=35.7
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEe-eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSY-ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~-~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
|+|+.+|+.+ ++.+.|..+ +.+ +..++|||+++|++.... ..+|.++-++|
T Consensus 37 GRll~ydp~t--~~~~vl~~~-----L~fpNGVals~d~~~vlv~Et~--------~~Ri~rywl~G 88 (89)
T PF03088_consen 37 GRLLRYDPST--KETTVLLDG-----LYFPNGVALSPDESFVLVAETG--------RYRILRYWLKG 88 (89)
T ss_dssp EEEEEEETTT--TEEEEEEEE-----ESSEEEEEE-TTSSEEEEEEGG--------GTEEEEEESSS
T ss_pred cCEEEEECCC--CeEEEehhC-----CCccCeEEEcCCCCEEEEEecc--------CceEEEEEEeC
Confidence 6899999998 777777654 333 678899999997666442 25777766653
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PLN02606 palmitoyl-protein thioesterase | Back alignment and domain information |
|---|
Probab=87.84 E-value=2.9 Score=42.26 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
+.| ||+.||.+.......+....+.+... |+-+..+-. |. +.-.++. + ..-+.+..+.+.+.+....
T Consensus 26 ~~P-vViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~i-g~-~~~~s~~-------~-~~~~Qv~~vce~l~~~~~L- 93 (306)
T PLN02606 26 SVP-FVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVEI-GN-GVQDSLF-------M-PLRQQASIACEKIKQMKEL- 93 (306)
T ss_pred CCC-EEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEEE-CC-Ccccccc-------c-CHHHHHHHHHHHHhcchhh-
Confidence 345 55689986555556666677777533 665555542 21 1111111 1 1123334444444443222
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCC--cceEEEeec
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLY 605 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~~ 605 (732)
.+-+-++|+|.||.+.=.++. .|+ .++-.|.++
T Consensus 94 ~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlg 129 (306)
T PLN02606 94 SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLG 129 (306)
T ss_pred cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEec
Confidence 346899999999999888877 554 366666554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.75 E-value=45 Score=38.51 Aligned_cols=241 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred CceeEEECCEEEEEeCCCC-eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 147 GGAFRIFGDTVIFSNYKDQ-RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~-~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
+.+|.++.-+|+.+-.... +||-+.+. --..+.... .-......|+|++- +||+..+. ..|-+
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeH----dGpVRgv~FH~~qp--lFVSGGDD-------ykIkV 77 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEH----DGPVRGVDFHPTQP--LFVSGGDD-------YKIKV 77 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhcc----CCccceeeecCCCC--eEEecCCc-------cEEEE
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
++.++.+- .-.|....+++....|.+-=-||.-.+ +...|.+++.. +++. +.++++.. .++.-
T Consensus 78 WnYk~rrc--lftL~GHlDYVRt~~FHheyPWIlSAS--------DDQTIrIWNwq-sr~~--iavltGHn----HYVMc 140 (1202)
T KOG0292|consen 78 WNYKTRRC--LFTLLGHLDYVRTVFFHHEYPWILSAS--------DDQTIRIWNWQ-SRKC--IAVLTGHN----HYVMC 140 (1202)
T ss_pred Eeccccee--hhhhccccceeEEeeccCCCceEEEcc--------CCCeEEEEecc-CCce--EEEEecCc----eEEEe
Q ss_pred ceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccc---------------------------ccccCCCceeecccc
Q 004735 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---------------------------DAEFSRPLWVFGINS 358 (732)
Q Consensus 306 ~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~---------------------------~~~~~~~~w~~~~~~ 358 (732)
.+|.|-..+++++.- .+.+.++|..+-+.+...++ ++...+..|.
T Consensus 141 AqFhptEDlIVSaSL---DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa----- 212 (1202)
T KOG0292|consen 141 AQFHPTEDLIVSASL---DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA----- 212 (1202)
T ss_pred eccCCccceEEEecc---cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE-----
Q ss_pred eeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccC--CCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 359 YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 359 ~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
+|. .---++++...+....||+++ +++.++.=|.- ...|+.+.....+=++.+.+.+....+|-++-.++
T Consensus 213 -Afh----pTlpliVSG~DDRqVKlWrmn-etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 213 -AFH----PTLPLIVSGADDRQVKLWRMN-ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred -Eec----CCcceEEecCCcceeeEEEec-cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=87.31 E-value=15 Score=37.43 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=89.2
Q ss_pred eEEcCCCcEEEEeecCCC-------CCceEEEEcCCCCCCCCcc-cCCCCCcc-cccccccCCceeEEEC-------CEE
Q 004735 94 TAVDGHGRLIWLESRPTE-------AGRGVLVKEPAKAGDEPSD-ITPKEYAV-RTTAQEYGGGAFRIFG-------DTV 157 (732)
Q Consensus 94 ~~~~pg~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~~-l~~~~~~~-~~~~~~~g~~~~~~~~-------~~i 157 (732)
+..++-+++|.++.+.-+ .+...|+.++..++.-.+. .+|+.... .+. ...+.++. ..+
T Consensus 6 v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~-----lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 6 VQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSF-----LNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp EEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGG-----EEEEEEECTTTTS-SEEE
T ss_pred EEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccc-----cceEEEEccCCCCcceEE
Confidence 445546788888864311 1234677777765421122 22322111 111 12233332 234
Q ss_pred EEEeCCCCeEEEEeCCCCCCCceecCCCCC--CC-C---------eEe----eceee---cCCCCEEEEEEeccCCCCCC
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYG--EP-L---------VSY----ADGIF---DPRFNRYVTVREDRRQDALN 218 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~--~~-~---------~~~----~~~~~---spdG~~l~~~~~~~~~~~~~ 218 (732)
++++.....|.++|+.+ ++.+++....- .+ . ... ...+. +|||++|+|..-.
T Consensus 81 YItD~~~~glIV~dl~~--~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls------- 151 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLAT--GKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS------- 151 (287)
T ss_dssp EEEETTTCEEEEEETTT--TEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-------
T ss_pred EEeCCCcCcEEEEEccC--CcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-------
Confidence 44555556899999987 66655543210 00 0 011 11223 4477766554321
Q ss_pred ceeEEEEEEcCC---CCcc-------ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce--
Q 004735 219 STTEIVAIALNG---QNIQ-------EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-- 286 (732)
Q Consensus 219 ~~~~l~~~d~~~---~~~~-------~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~-- 286 (732)
...+|.++.+- .... .++.+........+..++++|. |+|.... ...|+.++.+ +..
T Consensus 152 -s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~-------~~aI~~w~~~--~~~~~ 220 (287)
T PF03022_consen 152 -SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVE-------QNAIGCWDPD--GPYTP 220 (287)
T ss_dssp --SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECC-------CTEEEEEETT--TSB-G
T ss_pred -CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCC-------CCeEEEEeCC--CCcCc
Confidence 14678776432 1100 0122221112334567788775 7776633 3458888876 311
Q ss_pred eeeEEecCCCCCccccCcCceeCC--CCcEEEEEec
Q 004735 287 YKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDR 320 (732)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~wsp--Dg~l~~~~~~ 320 (732)
.+..++...+ +....+..+.+.+ ||.|++.+++
T Consensus 221 ~~~~~l~~d~-~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 221 ENFEILAQDP-RTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp CCEEEEEE-C-C-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred cchheeEEcC-ceeeccceeeeccccCceEEEEECc
Confidence 1223333222 1113455667777 7778877765
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=87.31 E-value=52 Score=36.39 Aligned_cols=213 Identities=13% Similarity=0.012 Sum_probs=91.9
Q ss_pred EEEEEeC----CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 156 TVIFSNY----KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 156 ~i~f~~~----~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.++|... .....|++|.+ |..|-..... ......+..-++|..++.. . ..++.+|+.|.
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~---G~Vrw~~~~~---~~~~~~~~~l~nG~ll~~~-~----------~~~~e~D~~G~ 177 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNN---GDVRWYLPLD---SGSDNSFKQLPNGNLLIGS-G----------NRLYEIDLLGK 177 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETT---S-EEEEE-GG---GT--SSEEE-TTS-EEEEE-B----------TEEEEE-TT--
T ss_pred cEEEEeCCCCCCCceEEEECCC---ccEEEEEccC---ccccceeeEcCCCCEEEec-C----------CceEEEcCCCC
Confidence 5555554 23478888887 4554332221 1111225567899875443 3 58889999865
Q ss_pred CccccEEcc--cCC-CceeccccCCCCCeEEEEeccC-----CCCCCCccEEEEEEecCCCceeeeEEecCC-C------
Q 004735 232 NIQEPKVLV--SGS-DFYAFPRMDPRGERMAWIEWHH-----PNMPWDKAELWVGYISENGDVYKRVCVAGF-D------ 296 (732)
Q Consensus 232 ~~~~~~~lt--~~~-~~~~~p~~SPDG~~la~~~~~~-----~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~-~------ 296 (732)
. ..... .+. .++-....-|+|..|+.+.... .+..-....|..+| . +|++.+.-.+... +
T Consensus 178 v---~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~-tG~vv~~wd~~d~ld~~~~~~ 252 (477)
T PF05935_consen 178 V---IWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-P-TGEVVWEWDFFDHLDPYRDTV 252 (477)
T ss_dssp E---EEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--T-TS-EEEEEEGGGTS-TT--TT
T ss_pred E---EEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-C-CCCEEEEEehHHhCCcccccc
Confidence 4 33332 221 3344566789999887665211 01001233466677 5 7876543222111 0
Q ss_pred ---------------CCccccCcCceeCC-CCcEEEEEeccCCeeeEEEEeccCCeEEEecccc--cc------------
Q 004735 297 ---------------PTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AE------------ 346 (732)
Q Consensus 297 ---------------~~~~~~~~~~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~--~~------------ 346 (732)
.+| ..+..+.+.+ |+.|++++ | .+..|+.+|..++++.-+.... ..
T Consensus 253 ~~~~~~~~~~~~~~~~DW-~H~Nsi~yd~~dd~iivSs-R--~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd 328 (477)
T PF05935_consen 253 LKPYPYGDISGSGGGRDW-LHINSIDYDPSDDSIIVSS-R--HQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVD 328 (477)
T ss_dssp GGT--SSSSS-SSTTSBS---EEEEEEETTTTEEEEEE-T--TT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-
T ss_pred cccccccccccCCCCCCc-cccCccEEeCCCCeEEEEc-C--cceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeec
Confidence 011 1112334445 44355444 3 3456889998888887665221 11
Q ss_pred ---------cCCCceeecccceeeeeecCCC---CEEEEEEEEC---------------CEEEEEEEECCCCceEEec
Q 004735 347 ---------FSRPLWVFGINSYEIIQSHGEK---NLIACSYRQN---------------GRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 347 ---------~~~~~w~~~~~~~~~~~~~~~~---~~l~~~s~~~---------------g~~~ly~~~~~~~~~~~lt 397 (732)
.....|.-+.+...+++ ++ ..++|--... .+.-.|++|.+.+..+++-
T Consensus 329 ~~G~~~~~~~~~~~~~~gQH~~~~~~---~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~T~~~vw 403 (477)
T PF05935_consen 329 SNGNPIDCGDGDFDWFWGQHTAHLIP---DGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDENKMTVEQVW 403 (477)
T ss_dssp TTS-B-EBSSSS----SS-EEEEE-T---TS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETTTTEEEEEE
T ss_pred cCCceeeccCCCCcccccccceEEcC---CCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCCCceEEEEE
Confidence 12234666666677774 55 5555543310 1233577777777666554
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.15 E-value=3.9 Score=40.90 Aligned_cols=93 Identities=10% Similarity=0.104 Sum_probs=58.8
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCe
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 324 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~ 324 (732)
.--+|++|++.||... +..++.++... +.. ......+...+ ..+..+.|+|.+. |+-.+.+ ++
T Consensus 14 tchAwn~drt~iAv~~--------~~~evhiy~~~-~~~~w~~~htls~Hd----~~vtgvdWap~snrIvtcs~d-rn- 78 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSP--------NNHEVHIYSML-GADLWEPAHTLSEHD----KIVTGVDWAPKSNRIVTCSHD-RN- 78 (361)
T ss_pred eeeeecCCCceEEecc--------CCceEEEEEec-CCCCceeceehhhhC----cceeEEeecCCCCceeEccCC-CC-
Confidence 3457999999998765 34568888877 444 44455666666 7788899999986 6654444 22
Q ss_pred eeEEEEeccCCeEEE---ecccccccCCCceeec
Q 004735 325 WNLHKWIESNNEVLA---IYSLDAEFSRPLWVFG 355 (732)
Q Consensus 325 ~~l~~~d~~~g~~~~---l~~~~~~~~~~~w~~~ 355 (732)
..+|.. +++++.++ |...+.......|+|.
T Consensus 79 ayVw~~-~~~~~WkptlvLlRiNrAAt~V~WsP~ 111 (361)
T KOG1523|consen 79 AYVWTQ-PSGGTWKPTLVLLRINRAATCVKWSPK 111 (361)
T ss_pred cccccc-CCCCeeccceeEEEeccceeeEeecCc
Confidence 334432 25565442 3344555566778873
|
|
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=87.14 E-value=1.4 Score=43.44 Aligned_cols=51 Identities=12% Similarity=-0.045 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--C----CCcceEEEeecCcC
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--F----RDTFKAGASLYGVA 608 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~----p~~~~a~v~~~~~~ 608 (732)
.++...+..+.++. ...+|.+.|||+||.+|..++. . +..+.+....+|-.
T Consensus 112 ~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 44555555555542 3468999999999999987765 2 44566666666543
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.06 E-value=42 Score=37.61 Aligned_cols=116 Identities=9% Similarity=0.050 Sum_probs=54.5
Q ss_pred CcCCHHHHhcc-CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC-cccCCCCCcccccccccCCceeEEE
Q 004735 77 SPLTADVVSGA-SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIF 153 (732)
Q Consensus 77 ~~~~~~~i~~~-~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~l~~~~~~~~~~~~~~g~~~~~~~ 153 (732)
|.|+..+...+ ..++.-+.|.. .+.++-.+ .+|-+.+|..-.+ .. .+.+... + .+.+. ..+|..+
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD----t~GlIiVWmlykg---sW~EEMiNnR-n-KSvV~---SmsWn~d 126 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSD----TSGLIIVWMLYKG---SWCEEMINNR-N-KSVVV---SMSWNLD 126 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccC----CCceEEEEeeecc---cHHHHHhhCc-C-ccEEE---EEEEcCC
Confidence 33555554444 45667778886 67776644 3566555554332 22 1122111 0 11111 1233344
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEec
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRED 211 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~ 211 (732)
|.+|..+. .+|.+.+=.+++ .. +=..+ -.+.......||+|.+.++|-..+
T Consensus 127 G~kIcIvY-eDGavIVGsvdG--NR---IwgKe-Lkg~~l~hv~ws~D~~~~Lf~~an 177 (1189)
T KOG2041|consen 127 GTKICIVY-EDGAVIVGSVDG--NR---IWGKE-LKGQLLAHVLWSEDLEQALFKKAN 177 (1189)
T ss_pred CcEEEEEE-ccCCEEEEeecc--ce---ecchh-cchheccceeecccHHHHHhhhcC
Confidence 55554433 344454444443 10 00000 002233566799999988887653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.04 E-value=25 Score=38.28 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=78.5
Q ss_pred cCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-C
Q 004735 78 PLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-D 155 (732)
Q Consensus 78 ~~~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-~ 155 (732)
+++.+.+......|..+..+| |+.+... ++|.+.|+.... .|....+.+ ..+.|.. +
T Consensus 22 ~l~~k~lg~~~~~p~~ls~npngr~v~V~-----g~geY~iyt~~~---------------~r~k~~G~g-~~~vw~~~n 80 (443)
T PF04053_consen 22 PLSVKELGSCEIYPQSLSHNPNGRFVLVC-----GDGEYEIYTALA---------------WRNKAFGSG-LSFVWSSRN 80 (443)
T ss_dssp ----EEEEE-SS--SEEEE-TTSSEEEEE-----ETTEEEEEETTT---------------TEEEEEEE--SEEEE-TSS
T ss_pred eEEeccCCCCCcCCeeEEECCCCCEEEEE-----cCCEEEEEEccC---------------CcccccCce-eEEEEecCc
Confidence 456666666666788999999 6666662 257888887311 121222222 2344444 3
Q ss_pred EEEEEeCCCCeEEE-EeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYKDQRLYK-HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~-~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
+.++.. ..+.|-+ -+++. ...+.+... .. .+--|. |.. +++..+ ..|..+|..+++.
T Consensus 81 ~yAv~~-~~~~I~I~kn~~~--~~~k~i~~~-----~~-~~~If~--G~L-L~~~~~---------~~i~~yDw~~~~~- 138 (443)
T PF04053_consen 81 RYAVLE-SSSTIKIYKNFKN--EVVKSIKLP-----FS-VEKIFG--GNL-LGVKSS---------DFICFYDWETGKL- 138 (443)
T ss_dssp EEEEE--TTS-EEEEETTEE---TT-----S-----S--EEEEE---SSS-EEEEET---------TEEEEE-TTT--E-
T ss_pred cEEEEE-CCCeEEEEEcCcc--ccceEEcCC-----cc-cceEEc--CcE-EEEECC---------CCEEEEEhhHcce-
Confidence 444333 3444555 45543 333344432 11 111233 775 455441 4689999998772
Q ss_pred ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC--------CCceeeeEEecCCCCCccccCcCc
Q 004735 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--------NGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 235 ~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~--------~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
++++.-.+ +....||+||+.+|.+..+ .+++++.+. +|--.....+.+-. ..+...
T Consensus 139 -i~~i~v~~--vk~V~Ws~~g~~val~t~~---------~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg 202 (443)
T PF04053_consen 139 -IRRIDVSA--VKYVIWSDDGELVALVTKD---------SIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSG 202 (443)
T ss_dssp -EEEESS-E---EEEEE-TTSSEEEEE-S----------SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEE
T ss_pred -eeEEecCC--CcEEEEECCCCEEEEEeCC---------eEEEEEecchhcccccccCchhceEEEEEec----ceeEEE
Confidence 44444221 3567899999999998622 266666541 11111123333312 456678
Q ss_pred eeCCCCcEEEEE
Q 004735 307 KWSSKGELFFVT 318 (732)
Q Consensus 307 ~wspDg~l~~~~ 318 (732)
.|..| -++|++
T Consensus 203 ~W~~d-~fiYtT 213 (443)
T PF04053_consen 203 CWVED-CFIYTT 213 (443)
T ss_dssp EEETT-EEEEE-
T ss_pred EEEcC-EEEEEc
Confidence 89766 355543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.80 E-value=38 Score=35.89 Aligned_cols=116 Identities=9% Similarity=0.015 Sum_probs=62.8
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
....-+|+|.+|+.... ..+||++.+.+|. .-.+.... ..+.-..||-||+.|. ....+
T Consensus 85 ~al~s~n~G~~l~ag~i---------~g~lYlWelssG~---LL~v~~aHYQ~ITcL~fs~dgs~ii-TgskD------- 144 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTI---------SGNLYLWELSSGI---LLNVLSAHYQSITCLKFSDDGSHII-TGSKD------- 144 (476)
T ss_pred eeeecCCCceEEEeecc---------cCcEEEEEecccc---HHHHHHhhccceeEEEEeCCCcEEE-ecCCC-------
Confidence 33456899998766533 3699999999997 32222211 1223357899998764 33222
Q ss_pred cEEEEEEe------cCCCceeeeEEecCCCCCccccCcCceeCCCCc--EEEEEeccCCeeeEEEEeccCCe
Q 004735 273 AELWVGYI------SENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 273 ~~l~v~d~------~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~--l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
..+.++.+ +.++.+..+..+.+.. ..+.++...+-|. .+|++.. . ..+-.+|+..|.
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht----lsITDl~ig~Gg~~~rl~TaS~-D--~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHT----LSITDLQIGSGGTNARLYTASE-D--RTIKLWDLSLGV 209 (476)
T ss_pred ccEEEEEEEeecccccCCCccceeeeccCc----ceeEEEEecCCCccceEEEecC-C--ceEEEEEeccce
Confidence 22443332 2233444455555554 5566666655443 3334332 1 334455666664
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.1 Score=47.31 Aligned_cols=39 Identities=18% Similarity=0.096 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
.+++.+.++.+++++.-..-+|.+.|||+||.+|+.++.
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHH
Confidence 456777888887765322235999999999999988874
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=86.59 E-value=34 Score=36.08 Aligned_cols=114 Identities=12% Similarity=0.061 Sum_probs=59.5
Q ss_pred EEEEEeccC--CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC-C
Q 004735 314 LFFVTDRKN--GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-G 390 (732)
Q Consensus 314 l~~~~~~~~--g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~-~ 390 (732)
|+..+++.. ..-.||++|++++..+.++.....+.. ... ....+.+-.++.++...+|...++|..+-|.+..+ .
T Consensus 116 lavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~-~~~-e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~ 193 (381)
T PF02333_consen 116 LAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIAT-DLS-EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGD 193 (381)
T ss_dssp EEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE--SSS-SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TT
T ss_pred EEEEecCcCCCCeEEEEEecCCCCcceEcCCCCccccc-ccc-cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCC
Confidence 677787733 346789999988888877632211100 000 00111111111245667778888898888887643 3
Q ss_pred Cc-----eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 391 HS-----LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 391 ~~-----~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
+. +|.+.. ...+..+ .++....+|++... ..||+++.+.
T Consensus 194 g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~---~GIW~y~Aep 238 (381)
T PF02333_consen 194 GKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEED---VGIWRYDAEP 238 (381)
T ss_dssp SSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETT---TEEEEEESSC
T ss_pred CcEeeEEEEEecC-CCcceEEEEecccCCEEEecCc---cEEEEEecCC
Confidence 33 344443 2356666 45555666666543 4799998764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.52 E-value=15 Score=40.10 Aligned_cols=238 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred cccccCCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCc
Q 004735 141 TAQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNS 219 (732)
Q Consensus 141 ~~~~~g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 219 (732)
+.|.--..+++.+.. .-+.+...+|.+-++.+.+ |...+.... .......+|+|.++.-+......
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T--gRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~------- 463 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT--GRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVG------- 463 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeec--ceEEEEEee----cceeEEEEecCCCCceeEEEEec-------
Q ss_pred eeEEEEEEcCCCCccccEEcccC----------------------------------------CCceeccccCCCCCeEE
Q 004735 220 TTEIVAIALNGQNIQEPKVLVSG----------------------------------------SDFYAFPRMDPRGERMA 259 (732)
Q Consensus 220 ~~~l~~~d~~~~~~~~~~~lt~~----------------------------------------~~~~~~p~~SPDG~~la 259 (732)
..+++++..=|. ++..+ ...+.+..|.-+|.+|+
T Consensus 464 -~~~~ivnp~~G~-----~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 464 -ECVLIVNPIFGD-----RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred -CceEEeCccccc-----hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Q ss_pred EEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCe-E
Q 004735 260 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-V 337 (732)
Q Consensus 260 ~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~-~ 337 (732)
-+..+. .+..+++.++. .... ...+.-.. +.+....|-|--- +++.+.+ .+.++|+..++ +
T Consensus 538 tV~~~~-----~~~~VliHQLS-K~~s--Q~PF~ksk----G~vq~v~FHPs~p~lfVaTq~-----~vRiYdL~kqelv 600 (733)
T KOG0650|consen 538 TVMPDS-----GNKSVLIHQLS-KRKS--QSPFRKSK----GLVQRVKFHPSKPYLFVATQR-----SVRIYDLSKQELV 600 (733)
T ss_pred EeccCC-----CcceEEEEecc-cccc--cCchhhcC----CceeEEEecCCCceEEEEecc-----ceEEEehhHHHHH
Q ss_pred EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEE
Q 004735 338 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEG 417 (732)
Q Consensus 338 ~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~ 417 (732)
+.|.++-..+....-++ .|..|++.+. +...-.|-+++.++-.+.|......+.++..-...=+|..
T Consensus 601 KkL~tg~kwiS~msihp------------~GDnli~gs~-d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas 667 (733)
T KOG0650|consen 601 KKLLTGSKWISSMSIHP------------NGDNLILGSY-DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS 667 (733)
T ss_pred HHHhcCCeeeeeeeecC------------CCCeEEEecC-CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeee
Q ss_pred eCCCCCcEEE
Q 004735 418 ASGVEPSSVA 427 (732)
Q Consensus 418 ~~~~~~~~ly 427 (732)
+++++.-.++
T Consensus 668 ~sdDgtv~Vf 677 (733)
T KOG0650|consen 668 GSDDGTVIVF 677 (733)
T ss_pred ecCCCcEEEE
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 732 | ||||
| 3azo_A | 662 | Crystal Structure Of Puromycin Hydrolase Length = 6 | 2e-95 | ||
| 3azp_A | 662 | Crystal Structure Of Puromycin Hydrolase S511a Muta | 1e-91 | ||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 3e-16 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 2e-13 | ||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 2e-13 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 4e-13 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 6e-13 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 6e-13 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 2e-12 | ||
| 1orv_A | 728 | Crystal Structure Of Porcine Dipeptidyl Peptidase I | 1e-07 | ||
| 1z68_A | 719 | Crystal Structure Of Human Fibroblast Activation Pr | 2e-07 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 2e-07 | ||
| 2qt9_A | 766 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 8e-07 | ||
| 3qbj_A | 748 | Crystal Structure Of Dipeptidyl Peptidase Iv In Com | 9e-07 | ||
| 2qjr_A | 748 | Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf | 9e-07 | ||
| 3nox_A | 753 | Crystal Structure Of Human Dpp-Iv In Complex With S | 9e-07 | ||
| 2bgr_A | 738 | Crystal Structure Of Hiv-1 Tat Derived Nonapeptides | 9e-07 | ||
| 4a5s_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A N | 9e-07 | ||
| 1r9n_A | 739 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 9e-07 | ||
| 2rip_A | 729 | Structure Of Dppiv In Complex With An Inhibitor Len | 1e-06 | ||
| 1pfq_A | 731 | Crystal Structure Of Human Apo Dipeptidyl Peptidase | 1e-06 | ||
| 1x70_A | 728 | Human Dipeptidyl Peptidase Iv In Complex With A Bet | 1e-06 | ||
| 1j2e_A | 740 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 1e-06 | ||
| 2onc_A | 731 | Crystal Structure Of Human Dpp-4 Length = 731 | 1e-06 | ||
| 3q8w_A | 732 | A B-Aminoacyl Containing Thiazolidine Derivative An | 1e-06 | ||
| 2g5p_A | 726 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 1e-06 | ||
| 1n1m_A | 728 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 1e-06 | ||
| 3ccb_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A B | 1e-06 | ||
| 2rgu_A | 734 | Crystal Structure Of Complex Of Human Dpp4 And Inhi | 1e-06 | ||
| 1r9m_A | 733 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 1e-06 | ||
| 2jid_A | 736 | Human Dipeptidyl Peptidase Iv In Complex With 1-(3, | 1e-06 | ||
| 1u8e_A | 728 | Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Leng | 2e-06 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 2e-05 | ||
| 3doh_A | 380 | Crystal Structure Of A Thermostable Esterase Length | 4e-04 |
| >pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662 | Back alignment and structure |
|
| >pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662 | Back alignment and structure |
|
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
| >pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv (Cd26) Length = 728 | Back alignment and structure |
|
| >pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl Cyclohexylalanine Inhibitor Length = 766 | Back alignment and structure |
|
| >pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex With Inhibitor Length = 748 | Back alignment and structure |
|
| >pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf Length = 748 | Back alignment and structure |
|
| >pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With Sa-(+)-(6- (Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1, 2-A]pyrimidin- 2-Yl)(Morpholino)methanone Length = 753 | Back alignment and structure |
|
| >pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides Tat(1-9) Bound To The Active Site Of Dipeptidyl Peptidase Iv (Cd26) Length = 738 | Back alignment and structure |
|
| >pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval Heterocyclic Dpp4 Inhibitor Length = 740 | Back alignment and structure |
|
| >pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution Length = 739 | Back alignment and structure |
|
| >pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor Length = 729 | Back alignment and structure |
|
| >pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv / Cd26 Length = 731 | Back alignment and structure |
|
| >pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino Acid Inhibitor Length = 728 | Back alignment and structure |
|
| >pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv Length = 740 | Back alignment and structure |
|
| >pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4 Length = 731 | Back alignment and structure |
|
| >pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv Complex Length = 732 | Back alignment and structure |
|
| >pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv) Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor 21ac Length = 726 | Back alignment and structure |
|
| >pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN INHIBITOR Length = 728 | Back alignment and structure |
|
| >pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Benzimidazole Derivative Length = 740 | Back alignment and structure |
|
| >pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor Length = 734 | Back alignment and structure |
|
| >pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1 Ang. Resolution. Length = 733 | Back alignment and structure |
|
| >pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4- Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine Length = 736 | Back alignment and structure |
|
| >pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Length = 728 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase Length = 380 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 732 | |||
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 0.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 9e-99 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 9e-40 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 8e-38 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 8e-36 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 5e-32 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 3e-29 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 5e-27 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 5e-27 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 1e-26 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 2e-24 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 6e-24 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 1e-22 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 7e-22 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 1e-21 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 1e-21 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 3e-21 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 6e-20 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 2e-19 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 1e-18 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 6e-18 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-17 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 1e-16 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 1e-16 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 1e-15 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 5e-15 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 1e-14 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 3e-13 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 2e-11 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 8e-11 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 2e-09 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 3e-09 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 4e-09 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 3e-08 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 4e-08 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 1e-07 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 3e-07 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 8e-07 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 4e-06 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 1e-05 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 2e-05 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 3e-05 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 3e-05 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 5e-05 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 7e-05 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 8e-05 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 8e-05 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 9e-05 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 1e-04 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 1e-04 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 2e-04 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 3e-04 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 4e-04 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 6e-04 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 6e-04 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 6e-04 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 8e-04 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 8e-04 |
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 649 bits (1677), Expect = 0.0
Identities = 215/671 (32%), Positives = 328/671 (48%), Gaps = 38/671 (5%)
Query: 69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
TAPYG+W+SP+ A +V+ S R G + W+ RP EAGR LV+ A
Sbjct: 4 TAPYGAWQSPIDAALVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRA--DGAE 60
Query: 129 SDITPKEYAVRTTAQEYGGGAFRIF-----GDTVIFSNYKDQRLYKHSIDSK-DSSPLPI 182
P + VR EY G + G ++F+++ DQRLY D+ + P P+
Sbjct: 61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TPDYGEP-LVSYADGIFDPRFNRYVTVREDRRQDAL-NSTTEIVAIALNGQNIQEPK--- 237
TP + +AD + P + E+ + + + A+ L+G +
Sbjct: 121 TPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180
Query: 238 -VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 296
+ F PR+ P G + W+ W HP MPW+ EL ++E+G + G
Sbjct: 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240
Query: 297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGI 356
E+ + +W+ G L TDR G+WNLH+ + + + EF+ PLW G+
Sbjct: 241 E---EAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM 296
Query: 357 NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFV 415
+ + + + G + LGILD L P+T+ +T+
Sbjct: 297 RWFAPLANG-----LIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVG 351
Query: 416 EGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKA 475
AS V ++ + + + + D + +Y+ P++ F G++
Sbjct: 352 VAASPRTAYEVVELDTVTGRAR-----TIGARHTDPVD-PAYYPEPQIRTFTAP-DGREI 404
Query: 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS 535
+A+ YPP +P + +E PP +V +HGGPTS +L+L + Y+TSRG DVNYGGS
Sbjct: 405 HAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGS 464
Query: 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR 595
TGYGR +RERL GRWG+VDV DC + AT L G AD RL + GGSAGG+T ++L
Sbjct: 465 TGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVST 524
Query: 596 DTFKAGASLYGVADL-SMLRAETHKFESRYIDNLVGS----EKDYYEKSPINFVDKFSCP 650
D + G LY V DL TH FESRY+D L+GS + Y +++P+ D+ P
Sbjct: 525 DVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVP 584
Query: 651 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710
+L QGLED V PP+Q + +A+ G+P A + +EGE HGFR+ E + LE ++ +
Sbjct: 585 FLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKETMVRALEAELSLY 644
Query: 711 ARVVGHFDVAD 721
A+V G +VA
Sbjct: 645 AQVFG-VEVAG 654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 315 bits (809), Expect = 9e-99
Identities = 100/518 (19%), Positives = 170/518 (32%), Gaps = 52/518 (10%)
Query: 199 DPRFNRYVTVREDRRQDALNSTTE--IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256
+ R ++ + TE + AL+G + L F D RG+
Sbjct: 108 AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG---GLRELARLPGFGFVS--DIRGD 162
Query: 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 316
+A + + + L+ +G + + S + S ++
Sbjct: 163 LIAGLGFF----GGGRVSLFT-SNLSSGGLRV---FDSGE----GSFSSASISPGMKVTA 210
Query: 317 VTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376
+ L + V + +FS I + +A R
Sbjct: 211 GLETA-REARLVTVDPRDGSVEDLELPSKDFS-SYRPTAITWL----GYLPDGRLAVVAR 264
Query: 377 QNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436
+ GRS + I + ++ P + + L L S P + V+L +
Sbjct: 265 REGRSAVFIDGE------RVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRI--VSLPSGE- 315
Query: 437 KAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPP 496
++ P+ L+ + L+ + G + Y P
Sbjct: 316 -----PLLEGGLPEDLRRS--IAGSRLVWVESF-DGSRVPTYVLES------GRAPTPGP 361
Query: 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN 556
+V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 362 TVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELE 421
Query: 557 DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRA 615
D + A + SG A L I G S GGY TL AL + FKAG + V D +
Sbjct: 422 DVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYE 479
Query: 616 ETHKFESRYIDNLVGSEKDYYEK-SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 674
+ +I+ L G ++ SPIN VD+ P+ L P ++ L
Sbjct: 480 LSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGEL 539
Query: 675 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712
G H E+ L + F A
Sbjct: 540 LARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLAT 577
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 9e-40
Identities = 33/255 (12%), Positives = 68/255 (26%), Gaps = 20/255 (7%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
IE P + P P ++ HG ++ + +
Sbjct: 7 SSIEIPVG--QDELSGTLLTP----------TGMPGVLFVHGWG--GSQHHSLVRAREAV 52
Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
G + + G GY + + ++D + L D + + G
Sbjct: 53 GLGCICMTFDLRGHEGYASMRQSVTRAQN----LDDIKAAYDQLASLPYVDAHSIAVVGL 108
Query: 582 SAGGYTTLAALAFRDTFKAGA-SLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSP 640
S GGY + R S D + + + + +
Sbjct: 109 SYGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRRALAPGDNLA 168
Query: 641 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIK 700
+ ++ ++L + D +VP R A N + G H E+ +
Sbjct: 169 LAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFT-NARSLTSRVIAGADHALSVKEHQQ 227
Query: 701 FTLEQQMVFFARVVG 715
+ + +V
Sbjct: 228 EYTRALIDWLTEMVV 242
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 8e-38
Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 52/308 (16%)
Query: 435 KLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEK 494
++++VD K+ S + + + + F V G + +A Y P E K
Sbjct: 60 EMRSVDPKIELKESSFQVSFAECY----DLYFTG-VRGARIHAKYIKPKT-------EGK 107
Query: 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW---- 550
P L++ HG + + + G+ V ++ G G ++
Sbjct: 108 HPALIRFHGYS---SNSGDWNDKLNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHI 164
Query: 551 --GIVD----------VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTF 598
G+ D D A ++ + DE R+ + G S GG +LA A
Sbjct: 165 IRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRV 224
Query: 599 KAGASLYGVADLSMLRAETHKFESRY---------IDNLVGSEKDYYEK----SPINFVD 645
+ S Y + ++ Y D E + + K N
Sbjct: 225 RKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAK 284
Query: 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQ 705
+ +++ GL D+V PP Y ++ + Y H + +
Sbjct: 285 RIKGDVLMCVGLMDQVCPPSTVFAAYNNIQS---KKDIKVYPDYGHEPMRGFG-----DL 336
Query: 706 QMVFFARV 713
M F +
Sbjct: 337 AMQFMLEL 344
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 8e-36
Identities = 49/280 (17%), Positives = 86/280 (30%), Gaps = 43/280 (15%)
Query: 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 520
+ + + + +Y P E P +VK HG + + W
Sbjct: 56 VYRLTYKS-FGNARITGWYAVPDK-------EGPHPAIVKYHGYN--ASYDGEIHEMVNW 105
Query: 521 TSRGWAFVDVNYGGSTGYGREF--------------RERLLGRWGIVDVNDCCSCATFLV 566
G+A + G + D +
Sbjct: 106 ALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVIS 165
Query: 567 GSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY-GVADLSMLRAET----HKFE 621
+ DE R+ +TGGS GG T+AA A D KA + Y +++ +
Sbjct: 166 SFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVALEQPYLEI 225
Query: 622 SRYIDNLVGSEKD------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 675
+ + E + +N D+ P+++ GL DKV PP Y L+
Sbjct: 226 NSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLE 285
Query: 676 ENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715
L Y H + A +++ FF +++
Sbjct: 286 ---TKKELKVYRYFGHEYIPAFQ-----TEKLAFFKQILK 317
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 5e-32
Identities = 48/315 (15%), Positives = 86/315 (27%), Gaps = 57/315 (18%)
Query: 440 DFKVVWSSSPDTLKYKSYFSLPELIEFPTE-----------VPGQKAYAYYYPPSNPIYQ 488
DF W + + + E +E + GQ+ + P
Sbjct: 35 DFDEFWEETLAESEKFPLDPVFERMESHLKTVEAYDVTFSGYRGQRIKGWLLVP------ 88
Query: 489 ASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY---------GGSTGYG 539
EEK P +V+ G +W S G+ ++ G + Y
Sbjct: 89 KLEEEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYP 145
Query: 540 REFRERLLGRWGIVDV------------NDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587
+ + + D + D++R+ I GGS GG
Sbjct: 146 EGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGI 205
Query: 588 TLAALAFRDTFKAGASLY-GVADLSMLRAET----HKFESRYIDNLVGSEKDYYEK---- 638
LA A KA + + + ++ E+ +
Sbjct: 206 ALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYF 265
Query: 639 SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 698
+NF + P + GL D + PP Y P + Y H +
Sbjct: 266 DGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNYYAG---PKEIRIYPYNNHEGGGSFQ 322
Query: 699 IKFTLEQQMVFFARV 713
+Q+ F ++
Sbjct: 323 AV----EQVKFLKKL 333
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-29
Identities = 34/233 (14%), Positives = 65/233 (27%), Gaps = 18/233 (7%)
Query: 485 PIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFV--DVNYGGSTGYGREF 542
+ PE LL+ HG ++ + + + RG+ + D G
Sbjct: 14 SVLARIPEAPKALLLALHGLQ--GSKEHILALLPGYAERGFLLLAFDAPRHGEREGPPPS 71
Query: 543 RERLLGRWGIVDVNDCCS--CATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKA 600
+ + V + + L + GGS G + LA +
Sbjct: 72 SKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRG 131
Query: 601 GASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLED 659
+ G L + + Y+ P + + P++ G D
Sbjct: 132 VLAFIGSGFPMKLPQGQVVEDPGVL--------ALYQAPPATRGEAYGGVPLLHLHGSRD 183
Query: 660 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712
+VP + K +AL+ + L + E G + F
Sbjct: 184 HIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPL---MARVGLAFLEH 233
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 5e-27
Identities = 74/422 (17%), Positives = 132/422 (31%), Gaps = 31/422 (7%)
Query: 303 PTEPKWSSKG-ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 361
P+EP ++ G + + + G+ ++ + + I E + Y I
Sbjct: 321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYI 380
Query: 362 IQSH----GEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEG 417
+ G +NL + + + F+ +
Sbjct: 381 SNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSK-------EAKYYQLR 433
Query: 418 ASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYA 477
SG + + K V + K +P + K +
Sbjct: 434 CSGPGLPLYTLHSSVNDKGLRV-----LEDNSALDKMLQNVQMPSKKLDFIILNETKFWY 488
Query: 478 YYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYGG 534
P + +K PLL+ + GP S+ LN + ++ + G
Sbjct: 489 QMILPPH----FDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRG 544
Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
S G + + R G +V D A G D KR+ I G S GGY T L
Sbjct: 545 SGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGS 604
Query: 595 R-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSE--KDYYEKSPINFVDKF-SCP 650
FK G ++ V+ ++ E RY+ + Y + ++ + F
Sbjct: 605 GSGVFKCGIAVAPVSRWEY--YDSVYTE-RYMGLPTPEDNLDHYRNSTVMSRAENFKQVE 661
Query: 651 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710
+L G D V Q+ +I KAL + G+ + Y E HG + + F
Sbjct: 662 YLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFI 721
Query: 711 AR 712
+
Sbjct: 722 KQ 723
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 5e-27
Identities = 51/244 (20%), Positives = 88/244 (36%), Gaps = 33/244 (13%)
Query: 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDV 530
G K AY P N EK PL + HG SE R I+ + + G A +
Sbjct: 10 GIKLNAYLDMPKNN------PEKCPLCIIIHGFTGHSEERHIVAVQ-ETLNEIGVATLRA 62
Query: 531 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL- 589
+ G +F + L +W + + + + + + G S GG + +
Sbjct: 63 DMYGHGKSDGKFEDHTLFKW----LTNILAVVDYAKKLDFVT--DIYMAGHSQGGLSVML 116
Query: 590 AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEK----------- 638
AA RD KA L A + + ++ + E D ++
Sbjct: 117 AAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVA 176
Query: 639 ---SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695
+FVDK++ P+++ G +D+ VP + + K K LV G+ H +
Sbjct: 177 QTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYK----NCKLVTIPGDTHCYDH 232
Query: 696 AENI 699
+
Sbjct: 233 HLEL 236
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 40/243 (16%), Positives = 67/243 (27%), Gaps = 26/243 (10%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
E E + G Y P P P ++ G ++ +
Sbjct: 128 ERHELVVD--GIPMPVYVRIPEGP-------GPHPAVIMLGGLEST--KEESFQMENLVL 176
Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
RG A + G R V D L + + G
Sbjct: 177 DRGMATATFDGPGQGEMFEYKRIAGDYEKYTSAVVD------LLTKLEAIRNDAIGVLGR 230
Query: 582 SAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFES--RYIDNLVGSEKDYYEK- 638
S GG L + A A S G +DL ET + +Y+ + E+
Sbjct: 231 SLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVH 290
Query: 639 ---SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695
+ + + +CP + G+ D VP + + + + LV + H
Sbjct: 291 AALETRDVLSQIACPTYILHGVHD-EVPLSFVDTVLELVPAEH--LNLVVEKDGDHCCHN 347
Query: 696 AEN 698
Sbjct: 348 LGI 350
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-24
Identities = 68/405 (16%), Positives = 130/405 (32%), Gaps = 32/405 (7%)
Query: 303 PTEPKWSSKGELFFVT-DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 361
+ P +S ++ K+G+ ++H ++ + I S E V + +
Sbjct: 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFYS 373
Query: 362 IQSHG----EKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDC-LFVE 416
+N+ S S + L + + +
Sbjct: 374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCH-------LRKERCQYYTASFSDYAKYYAL 426
Query: 417 GASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAY 476
G + + + + LP+ EV +
Sbjct: 427 VCYGPGIPISTLHDGRTDQEIKI-----LEENKELENALKNIQLPKEEIKKLEVDEITLW 481
Query: 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYG 533
P +K PLL++ +GGP S+ + +N + G V+
Sbjct: 482 YKMILPPQ----FDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGR 537
Query: 534 GSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593
G+ G + + + G+ +V D + + G DEKR+ I G S GGY + ALA
Sbjct: 538 GTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALA 597
Query: 594 FR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSE--KDYYEKSPINFVDKF-SC 649
FK G ++ V+ + E R++ + + Y + + + F +
Sbjct: 598 SGTGLFKCGIAVAPVSSWEY--YASVYTE-RFMGLPTKDDNLEHYKNSTVMARAEYFRNV 654
Query: 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 694
+L G D V + +I KAL + + Y + HG
Sbjct: 655 DYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGLS 699
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-24
Identities = 87/434 (20%), Positives = 155/434 (35%), Gaps = 45/434 (10%)
Query: 296 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH--------KWIESNN-EVLAIYSLDAE 346
PT V ++ G + + ++R GF +L+ + N V + ++D +
Sbjct: 332 SPTWVPLHNSLRFLDDGSILWSSER-TGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEK 390
Query: 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI 406
+ E S E + A + L HS S
Sbjct: 391 AG---LAYFRAGIE---SARESQIYAVPLQGGQPQRLSK-APGMHSASFA---------- 433
Query: 407 TLGNDCLFVEGASGVE-PSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIE 465
N ++V+ S P + + K+ + + +Y+ E
Sbjct: 434 --RNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEFGT 491
Query: 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE------ARGILNLSIQY 519
P+ P ++ P+ V +GGP S+ +L QY
Sbjct: 492 LTAADGKTPLNYSVIKPAG----FDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQY 547
Query: 520 WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCIT 579
+G+ ++ G+ GR+F L G+ G V+V D +L D R+ +
Sbjct: 548 LAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQ 607
Query: 580 GGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEK 638
G S GGY TL LA D++ G + V D + ++H + RY+D ++ Y E
Sbjct: 608 GWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLY--DSH-YTERYMDLPARNDAGYREA 664
Query: 639 SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 698
+ ++ P++L G+ D V + + AL++ G P L+ Y G +HG A+
Sbjct: 665 RVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADA 724
Query: 699 IKFTLEQQMVFFAR 712
+ F R
Sbjct: 725 LHR-YRVAEAFLGR 737
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 50/259 (19%), Positives = 86/259 (33%), Gaps = 16/259 (6%)
Query: 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-----RGILNL 515
Y P + P +K P++V +GGP ++ R +
Sbjct: 455 IRTGTIMAADGQTPLYYKLTMPLH----FDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGG 510
Query: 516 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575
Y +G+A V+ GS G F + + R G ++ D FL D R
Sbjct: 511 WDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADR 570
Query: 576 LCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD 634
+ + G S GG+ T + D FK G + V D + + RY D + +
Sbjct: 571 IGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNR--YAIM-YGERYFDAPQENPEG 627
Query: 635 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 694
Y + + ++L G D VV + A + Y +H
Sbjct: 628 YDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVM 687
Query: 695 KAENIKFTLEQQMV-FFAR 712
+ + L + + +F
Sbjct: 688 GPDRVH--LYETITRYFTD 704
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 7e-22
Identities = 68/467 (14%), Positives = 138/467 (29%), Gaps = 62/467 (13%)
Query: 259 AWIEWHH--PNMPWDKAELWVGYISENG--DVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314
AW+ + P D + + G + + V+ P S + + G+
Sbjct: 302 AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS--SNDNIQSITSGD- 358
Query: 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 374
+ VT + + E N++ + + D R L+ + + ++C
Sbjct: 359 WDVTK-------ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG------NFNRQCLSCD 405
Query: 375 YRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH 434
+N + F+ G V D
Sbjct: 406 LVENCTYFSASFSHSMD---------------------FFLLKCEGPGVPMVTVHNTTDK 444
Query: 435 KLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEK 494
K ++ K + +P++ E+ P+ +
Sbjct: 445 KKMFD-----LETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPAT----FTDTTH 495
Query: 495 PPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG 551
PLL+ G P S+ + ++ +S G V + GS G + + R G
Sbjct: 496 YPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLG 555
Query: 552 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-----DTFKAGASLYG 606
+++ D ++ D R+ + G GGY + L + TF G++L
Sbjct: 556 LLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSP 615
Query: 607 VADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPD 665
+ D + + F RY+ + Y + V ++ D+ +
Sbjct: 616 ITDFKL--YASA-FSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQ 672
Query: 666 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712
++ L +L Y E H F + + + FF
Sbjct: 673 HTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVE 719
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 97.6 bits (242), Expect = 1e-21
Identities = 41/281 (14%), Positives = 86/281 (30%), Gaps = 46/281 (16%)
Query: 438 AVDFKVVWSSSPDTLK------YKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASP 491
AV+ +V+ PD + ++ YF P + P V + + P P
Sbjct: 120 AVELEVLDGHDPDPGRLLCQTRHERYFLPPGVRREP--VRVGRVRGTLFLPPEP------ 171
Query: 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG 551
P +V G G+L +G+A + + Y +
Sbjct: 172 -GPFPGIVDMFGTGG----GLLEYRASLLAGKGFAVMALAYYNYEDLPKTMET------- 219
Query: 552 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVA--- 608
+ + +L+ + + + G S GG L+ +F A + G
Sbjct: 220 -LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANV 278
Query: 609 --------------DLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILF 654
++ R + K I +++ S + ++ V++ +
Sbjct: 279 GGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFL 338
Query: 655 QGLEDKVVPPDQA-RKIYKALKENGLPVA-LVEYEGEQHGF 693
G +D + + K L+ +G ++ Y H
Sbjct: 339 VGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYI 379
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 96.7 bits (240), Expect = 1e-21
Identities = 48/235 (20%), Positives = 74/235 (31%), Gaps = 48/235 (20%)
Query: 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAF-------- 527
Y + P +P+ K PL+V HG L ++ + WA
Sbjct: 160 YRLFVPKD-----VNPDRKYPLVVFLHGAGERGTDNYLQVAGNRG-AVVWAQPRYQVVHP 213
Query: 528 ---VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAG 584
+ ++ + F +R + L+ DE R+ ITG S G
Sbjct: 214 CFVLAPQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMG 273
Query: 585 GYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINF 643
GY T A+ + F A + G D+S +
Sbjct: 274 GYGTWTAIMEFPELFAAAIPICGGGDVSKVERIKDI------------------------ 309
Query: 644 VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 698
PI +F +D VVP + +R + K L E G V EYE +
Sbjct: 310 ------PIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDP 358
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 93.2 bits (231), Expect = 3e-21
Identities = 38/269 (14%), Positives = 66/269 (24%), Gaps = 52/269 (19%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNP----IYQASPEEKPPLLVKSHGG-------PTSEAR 510
+ I A + +Q + ++ HGG ++
Sbjct: 4 DKIHHHHHHMSNTVRAISPDITLFNKTLTFQEISQNTREAVIYIHGGAWNDPENTPNDFN 63
Query: 511 GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSG 569
+ N T + Y RL + D S T LV
Sbjct: 64 QLANTIKSMDTESTVCQYSIEY------------RLSPEITNPRNLYDAVSNITRLVK-- 109
Query: 570 KADEKRLCITGGSAGGYTTLAALA------------------FRDTFKAGASLYGVADLS 611
+ + + G S G LA K L G+ L
Sbjct: 110 EKGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLK 169
Query: 612 MLRAETHKFESRYIDNLVGSEKDYYEKSPI-------NFVDKFSCPIILFQGLEDKVVPP 664
L + + YE+ P + +FS + L D+++
Sbjct: 170 ELL-IEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTL 228
Query: 665 DQARKIYKALKENGLPVALVEYEGEQHGF 693
Q + L++ L L + H
Sbjct: 229 RQTNCLISCLQDYQLSFKLYLDDLGLHND 257
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 92.2 bits (228), Expect = 6e-20
Identities = 37/279 (13%), Positives = 77/279 (27%), Gaps = 42/279 (15%)
Query: 438 AVDFKVVWSSSPDTLKYKSYFSLPELIEFP----TEVPGQKAYAYYYPPSNPIYQASPEE 493
V+ +V+ P+ + P V + A + P P
Sbjct: 104 VVELEVLDGHDPEPGRLLCQAQHERHFLPPGVWRQSVRAGRVRATLFLPPGP-------G 156
Query: 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 553
P ++ G G+L G+A + + Y +
Sbjct: 157 PFPGIIDIFGIGG----GLLEYRASLLAGHGFATLALAYYNFEDLPNNMDN--------I 204
Query: 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSM- 612
+ +++ + + + G S G L+ +F A S+ G
Sbjct: 205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISGNT 264
Query: 613 -------------LRAETHKFESRYIDNLVGSEKDYYEK---SPINFVDKFSCPIILFQG 656
K + ++V + ++K PI+L G
Sbjct: 265 AINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVG 324
Query: 657 LEDKVVPPDQ-ARKIYKALKENGLPVA-LVEYEGEQHGF 693
+D + A+ + + L+ +G ++ Y G H
Sbjct: 325 QDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYI 363
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 2e-19
Identities = 34/228 (14%), Positives = 62/228 (27%), Gaps = 37/228 (16%)
Query: 480 YPPSNPIYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538
+ + PL V HGG + + RG+ ++Y
Sbjct: 73 FYSEKT------TNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDY------ 120
Query: 539 GREFRERLLGRWGIVD-VNDCCSCATFLVG-SGKADEKRLCITGGSAGGYTTLAALA--- 593
L + + + ++ + L G AG + L
Sbjct: 121 ------NLCPQVTLEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPN 174
Query: 594 -----FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFV---- 644
A L GV DL L + +E++ SP+ +
Sbjct: 175 VITAQRSKMVWALIFLCGVYDLRELSNLESVNPKNILG---LNERNIESVSPMLWEYTDV 231
Query: 645 -DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691
S I + D +Q+R L++ G + ++G H
Sbjct: 232 TVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDH 279
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 1e-18
Identities = 39/262 (14%), Positives = 81/262 (30%), Gaps = 51/262 (19%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
+ IE P E + Y ++ L+ GG TS + +
Sbjct: 136 KSIEVPFEG--ELLPGYAIIS--------EDKAQDTLIVVGGGDTS-REDLFYMLGYSGW 184
Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
+ + V+ G G+ + L + ++ +A +++ I G
Sbjct: 185 EHDYNVLMVDL---PGQGKNPNQGLHFEVDARAA------ISAILDWYQAPTEKIAIAGF 235
Query: 582 SAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG----------- 630
S GGY T A+ KA + + D++ + + + ++
Sbjct: 236 SGGGYFTAQAVEKDKRIKAWIASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNK 295
Query: 631 --------------------SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKI 670
S + E++ I +K P + G + Q++ +
Sbjct: 296 VAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVL 355
Query: 671 YKALKENGLPVALVEYEGEQHG 692
Y K+ G+ V L ++ E
Sbjct: 356 YDNFKQRGIDVTLRKFSSESGA 377
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 6e-18
Identities = 37/257 (14%), Positives = 73/257 (28%), Gaps = 48/257 (18%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-----PTSEARGILNLS 516
++ + Y P+++ GG E I
Sbjct: 3 QVEQRTLNTAAHPFQITAYWLDQI-SDFETAVDYPIMIICPGGGFTYHSGREEAPIA--- 58
Query: 517 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD---VNDCCSCATFLVGSGKA-- 571
+ G V +NY +L+ V + + ++ A
Sbjct: 59 -TRMMAAGMHTVVLNY------------QLIVGDQSVYPWALQQLGATIDWITTQASAHH 105
Query: 572 -DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLS--------------MLRAE 616
D +R+ + G SAGG+ A T + Y + +
Sbjct: 106 VDCQRIILAGFSAGGHVV-ATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGF 164
Query: 617 THKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE 676
N + ++ + + V S P ++Q D+ VPP + K +A+ +
Sbjct: 165 PTT---SAARNQITTDARLW--AAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQ 219
Query: 677 NGLPVALVEYEGEQHGF 693
+ + A + HG
Sbjct: 220 HQVATAYHLFGSGIHGL 236
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 9/124 (7%)
Query: 572 DEKRLCITGGSAGGYTTLAALAFRDTFK--AGASLYGVADLSMLRAETHKFESRYIDNLV 629
+ +++ + G SAGG+ + Y V N
Sbjct: 117 NPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTS--FTFGWPSDLSHF---NFE 171
Query: 630 GSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689
Y + V + P ++ +D+ VP + K L ++ +P +E
Sbjct: 172 IENISEY--NISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESG 229
Query: 690 QHGF 693
HG
Sbjct: 230 PHGV 233
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 1e-16
Identities = 36/255 (14%), Positives = 71/255 (27%), Gaps = 48/255 (18%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-----PTSEARGILNLS 516
++I+ + Y + P + + P ++ GG P ++A +
Sbjct: 21 QVIKQKLTATCAQLTGYLHQPDTN----AHQTNLPAIIIVPGGSYTHIPVAQAESLA--- 73
Query: 517 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR---WGIVDVNDCCSCATFLVGSGKA-- 571
+ G+ + Y LL G+ V D L
Sbjct: 74 -MAFAGHGYQAFYLEY------------TLLTDQQPLGLAPVLDLGRAVNLLRQHAAEWH 120
Query: 572 -DEKRLCITGGSAGGYTTLAALAF------------RDTFKAGASLYGVADLSMLRAETH 618
D +++ G S GG+ + K + G +S L
Sbjct: 121 IDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVISPLLGFPK 180
Query: 619 KFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG 678
+ + + V+ + P ++ +D +VP AL
Sbjct: 181 DDATL---ATWTPTPNEL--AADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALATAK 235
Query: 679 LPVALVEYEGEQHGF 693
+P L ++ HG
Sbjct: 236 IPYELHVFKHGPHGL 250
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 1e-16
Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 31/215 (14%)
Query: 480 YPPSNPIYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538
+ P L V HGG + + + S+GWA +Y
Sbjct: 56 FLPEGT--------PVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSY------ 101
Query: 539 GREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCITGGSAGGY-TTLAALAFRD 596
L I + T K + + + G SAGG+
Sbjct: 102 ------ELCPEVRISEITQQISQAVTAAA---KEIDGPIVLAGHSAGGHLVARMLDPEVL 152
Query: 597 TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQG 656
GA + V +S L + + +SP+ +++ + ++ G
Sbjct: 153 PEAVGARIRNVVPISPLSDLRPLLRTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVG 212
Query: 657 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691
++ DQA + +A V + H
Sbjct: 213 GAERPAFLDQAIWLVEAWD-----ADHVIAFEKHH 242
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 1e-15
Identities = 41/270 (15%), Positives = 77/270 (28%), Gaps = 43/270 (15%)
Query: 455 KSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN 514
YF I + G + P + + HG + +L
Sbjct: 16 NLYFQGMATITLERD--GLQLVGTREEPFGE--------IYDMAIIFHGFTANRNTSLLR 65
Query: 515 LSIQYWTSRGWAFVDVNY---GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571
A V ++ G S G +F + + D + ++
Sbjct: 66 EIANSLRDENIASVRFDFNGHGDSDG---KFENMTVLNE----IEDANAILNYVKTDPHV 118
Query: 572 DEKRLCITGGSAGGYTTL-AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 630
+ + G + GG A + D K L A L E + Y + +
Sbjct: 119 R--NIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIP 176
Query: 631 SEKDYYEKS-------------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 677
+ + + +F+ P+ L G +D VV P+ ++K + +
Sbjct: 177 DRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQ-- 234
Query: 678 GLPVALVEYEGEQHGF---RKAENIKFTLE 704
L EG H F + + T +
Sbjct: 235 --NSTLHLIEGADHCFSDSYQKNAVNLTTD 262
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 5e-15
Identities = 33/253 (13%), Positives = 62/253 (24%), Gaps = 38/253 (15%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
+ +E P E K A+ + + +KP +V G S + L +
Sbjct: 169 KQLEIPFE--KGKITAHLHLTNT--------DKPHPVVIVSAGLDSLQTDMWRLFRDHLA 218
Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
A + V+ G + L + + L D R+ + G
Sbjct: 219 KHDIAMLTVDMPSV---GYSSKYPLTEDYS----RLHQAVLNELFSIPYVDHHRVGLIGF 271
Query: 582 SAGGYTTLAALAFRDT-FKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKS- 639
GG + KA L + + + +++ S
Sbjct: 272 RFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVVDI 331
Query: 640 ---------------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684
K PI+ D V P + + A
Sbjct: 332 YSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTY---GKAKK 388
Query: 685 EYEGEQH-GFRKA 696
G+ ++
Sbjct: 389 ISSKTITQGYEQS 401
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 1e-14
Identities = 39/286 (13%), Positives = 85/286 (29%), Gaps = 49/286 (17%)
Query: 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVN 531
GQ+ + + PP P + +L+ G L+ +Y ++ G+ +
Sbjct: 17 GQELHVWETPPKEN----VPFKNNTILI--ASGFARRMDHFAGLA-EYLSTNGFHVFRYD 69
Query: 532 Y----GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587
G S+G E + N C+ +L G + + + S
Sbjct: 70 SLHHVGLSSG---SIDEFTMTTG----KNSLCTVYHWLQTKG---TQNIGLIAASLSARV 119
Query: 588 TLAALAFRDTFKAGASLYGVADLSMLRAETHKFES----------------------RYI 625
++ + + GV +L + F+ ++
Sbjct: 120 AYEVISDLEL-SFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFV 178
Query: 626 DNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685
+ D + S ++ V S P+I F D V ++ + ++ L
Sbjct: 179 RDCFEHHWDTLD-STLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTG--HCKLYS 235
Query: 686 YEGEQHGFRKAENIKFTLEQQMVFFARVV--GHFDVADEIIPIKID 729
G H + + Q + A + G ++ + I +
Sbjct: 236 LLGSSHDLGENLVVLRNFYQSVTKAAIAMDGGSLEIDVDFIEPDFE 281
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} Length = 241 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 46/243 (18%), Positives = 77/243 (31%), Gaps = 46/243 (18%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
P+ G+ AY+ P + + P+++ E G ++ I+
Sbjct: 7 GETSIPS--QGENMPAYHARP------KNADGPLPIVIVVQ-----EIFG-VHEHIRDLC 52
Query: 522 SR----GWA------FVDVNYGGSTGYGREFRERLLGRWGIVDV-NDCCSCATFLVGSGK 570
R G+ + + L+ + V D A++ G
Sbjct: 53 RRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG- 111
Query: 571 ADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 630
D RL ITG GG T A KA + YG LVG
Sbjct: 112 GDAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWYGK--------------------LVG 151
Query: 631 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690
+ K P++ + P++ G +D +P D + +AL+ +V Y
Sbjct: 152 EKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEAD 211
Query: 691 HGF 693
H F
Sbjct: 212 HAF 214
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} Length = 275 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 32/279 (11%), Positives = 74/279 (26%), Gaps = 82/279 (29%)
Query: 486 IYQASPEEKPPLLVKSHGG------PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539
I +A + ++V HGG + +++ + + + ++Y
Sbjct: 20 IIKAKNQPTKGVIVYIHGGGLMFGKANDLSPQYIDIL-----TEHYDLIQLSY------- 67
Query: 540 REFRERLLGRW---GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFR 595
RLL I++ D + + + + G S+G Y L+ L A
Sbjct: 68 -----RLLPEVSLDCIIE--DVYASFDAIQS--QYSNCPIFTFGRSSGAY--LSLLIARD 116
Query: 596 DTFKAGASLYGVADLSMLRAETHKFESRYIDNLV--------GSEKDYYEKSPINFVDKF 647
YG + ++ +T I + S + +
Sbjct: 117 RDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIY 176
Query: 648 SC--------------------------------PIILFQGLEDKVVPPDQARKIYKALK 675
P+ + D VP +++ +
Sbjct: 177 VYARGTGKWINMINIADYTDSKYNIAPDELKTLPPVFIAHCNGDYDVPVEESEH----IM 232
Query: 676 ENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714
+ +H F + ++ + + +VV
Sbjct: 233 NHVPHSTFERVNKNEHDF-----DRRPNDEAITIYRKVV 266
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 8e-11
Identities = 38/257 (14%), Positives = 68/257 (26%), Gaps = 53/257 (20%)
Query: 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 520
+ V K P+ +++ +HG +S + +Y
Sbjct: 12 EYAVSVS--VGEVKLKGNLVIPNGA---------TGIVLFAHGSGSSR----YSPRNRYV 56
Query: 521 TSR----GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576
G A + ++ + R R L + + +L + ++
Sbjct: 57 AEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKV 116
Query: 577 CITGGSAGGYTTL-AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY 635
G S GG L AA +T +A S G DL
Sbjct: 117 GYFGASTGGGAALVAAAERPETVQAVVSRGGRPDL------------------------- 151
Query: 636 YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695
+ + P +L G D V AL++ LV H F +
Sbjct: 152 ----APSALPHVKAPTLLIVGGYDLPVIAMNED----ALEQLQTSKRLVIIPRASHLFEE 203
Query: 696 AENIKFTLEQQMVFFAR 712
+ + +F
Sbjct: 204 PGALTAVAQLASEWFMH 220
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Length = 270 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 2e-09
Identities = 38/269 (14%), Positives = 71/269 (26%), Gaps = 52/269 (19%)
Query: 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 520
I + A P+ + P + G S+ G L +
Sbjct: 11 THAITVGQGSDARSIAALVRAPAQD--------ERPTCIWLGGY-RSDMTGTKALEMDDL 61
Query: 521 -TSRGWAFVDVNY---GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576
S G + +Y G S G FR+ + RW + + + EK +
Sbjct: 62 AASLGVGAIRFDYSGHGASGG---AFRDGTISRW----LEEALAVLDHF-----KPEKAI 109
Query: 577 CITGGSAGGYTTLAALAFRDTFKAGASLYGVADLS-------------MLRAETHKFESR 623
+ G + + G+ ++ + E +
Sbjct: 110 LVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAEN 169
Query: 624 YIDNLVGSEKDYYEKSPINFVD------------KFSCPIILFQGLEDKVVPPDQARKIY 671
V ++ CP+ + QG+ D VP A K+
Sbjct: 170 GYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLV 229
Query: 672 KALKENGLPVALVEYEGEQHGFRKAENIK 700
+ L + V L H + ++I
Sbjct: 230 EHLPAD--DVVLTLVRDGDHRLSRPQDID 256
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 2e-09
Identities = 37/272 (13%), Positives = 59/272 (21%), Gaps = 56/272 (20%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-GPTSE------------ 508
E EF P + P + + P ++ G G T E
Sbjct: 88 EKWEFYPF-PKSVSTFLVLKPEHL------KGAVPGVLCIPGSGRTKEGLVGEPGICDKL 140
Query: 509 ---ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE---------------RLLGR- 549
G+ V V+ + LG
Sbjct: 141 TEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWS 200
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVAD 609
W ++ + R+ I+G S G + A
Sbjct: 201 WLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDKDIYAFVY---NDF 257
Query: 610 LSMLRAETHKFESRYIDNLVGSEKDYYEKSP-----INFVDKFSC----PIILFQGLEDK 660
L + +N P NF D + PII +G D+
Sbjct: 258 LCQTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNFPDVVASLAPRPIIFTEGGLDR 317
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
+ Y A G P + +
Sbjct: 318 DFRL--VQSAYAAS---GKPENAEFHHYPKFA 344
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 3e-09
Identities = 67/451 (14%), Positives = 130/451 (28%), Gaps = 115/451 (25%)
Query: 264 HHPNMPWDKAELWVGYISENGD---VYKRVCVAGFDPTIVESPTEPKWSSK--GELFFVT 318
HH +M ++ E Y D V++ V FD V+ + S + +
Sbjct: 3 HHHHMDFETGEHQYQY----KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 319 DRKNG----FWNLHKWIESNNEVLAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLI 371
D +G FW L + E++ + L + ++ E Q +++
Sbjct: 59 DAVSGTLRLFWTL---LSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQ----PSMM 108
Query: 372 ACSYRQNGRSYLGILDDFGHSLSLLDI----PFTDIDNITLG---NDCLFVEGASGVEPS 424
Y L + + ++ P+ + L + ++G G +
Sbjct: 109 TRMYI----EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 425 SVAKVTLDDHKLKAV-DFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPS 483
VA +K++ DFK+ W L K+ S ++E QK P
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW------LNLKNCNSPETVLE-----MLQKLLYQIDPNW 213
Query: 484 NPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543
++ L + L ++ + +
Sbjct: 214 TS--RSDHSSNIKL-------RIHSIQAELRRLLKS--------------------KPYE 244
Query: 544 ERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCIT-------GGSAGGYTTLAALAFR 595
LL ++ V + + F + K L T SA T ++
Sbjct: 245 NCLL----VLLNVQNAKAWNAFNLSC-----KILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 596 DTFKAGASLYGVA-----DLSMLRAETHKFESRYIDNLVGSEK-------DYYEKSPINF 643
T + L E R + +++ D ++
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHV---N 351
Query: 644 VDKFSCPIILFQGLEDKVVPPDQARKIYKAL 674
DK + I L V+ P + RK++ L
Sbjct: 352 CDKLTTIIESS--LN--VLEPAEYRKMFDRL 378
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 76/570 (13%), Positives = 150/570 (26%), Gaps = 176/570 (30%)
Query: 12 LTRFSASSSSASINFK-YIFSRRTVFTAS---PKRQKQRGCKIMASTSPVPETYSATQDK 67
++ S+ + YI R ++ + K R + Y +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-----------LQPYLKLRQA 143
Query: 68 IT----APY-------GSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGV 116
+ A GS K+ + DV S ++ + WL + + V
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMDFK---IFWLNLKNCNSPETV 198
Query: 117 LVK------EPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170
L + SD + + Q + Y++
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-------------LRRLLKSKPYEN 245
Query: 171 SI----DSKDSSP----------LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDA 216
+ + +++ L T D + + D
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRF-----KQVTDFL---SAATTTHISLDHHSMT 297
Query: 217 LNS--TTEIVAIALNGQNIQEPKVLVSGSDFYA--FPRMDPRGERMAWIEWHHPNMPWDK 272
L ++ L+ + P+ +++ + R W W H N DK
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVNC--DK 354
Query: 273 A----ELWVGYIS--ENGDVYKRVCVAGFD-----PTIV-------ESPTEPKWSSKGEL 314
E + + E ++ R+ V F PTI+ ++ +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDV------MV 406
Query: 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC- 373
K + K ++I S+ E L N Y + H ++++
Sbjct: 407 VVNKLHKYSL--VEKQ--PKESTISIPSIYLELKVKL----ENEYAL---H--RSIVDHY 453
Query: 374 ----SYRQNGRSYLGILDD-----FGHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVE 422
++ + LD GH L ++ P T + L D F+E
Sbjct: 454 NIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLE------ 504
Query: 423 PSSVAKVTLDDHKLKAVDFKVVWSSSPDTL----KYKSYFS---------LPELIEFPTE 469
K+ D A S +TL YK Y + +++F
Sbjct: 505 ----QKIRHDSTAWNAS------GSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--- 551
Query: 470 VPGQKAYAYYYP-----------PSNPIYQ 488
+P + I++
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFE 581
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-09
Identities = 34/263 (12%), Positives = 65/263 (24%), Gaps = 54/263 (20%)
Query: 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG 524
F EV G+ Y+ P+ L++ HGG T + + + RG
Sbjct: 33 GFSLEVDGRTVPGVYWSPAEG-------SSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRG 85
Query: 525 WA--FVDVNYGGSTGYGREFRERLLGRWGIV-------------DVNDCCSCATFLVGSG 569
+ +D G + RE + D + F+
Sbjct: 86 ISAMAIDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAEE 145
Query: 570 KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV 629
G S G L A K +
Sbjct: 146 GPR--PTGWWGLSMGTMMGLPVTASDKRIKVALLGLMGVE-------------------- 183
Query: 630 GSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689
+ + + +CP+ +D++V +++ L L G+
Sbjct: 184 ----GVNGEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGTK--QKTLHVNPGK 237
Query: 690 QHGFRKAENIKFTLEQQMVFFAR 712
E T++ + +
Sbjct: 238 HSAVPTWEMFAGTVD----YLDQ 256
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 4e-09
Identities = 36/275 (13%), Positives = 66/275 (24%), Gaps = 50/275 (18%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG----------------GP 505
E EF P + P N + P ++ G
Sbjct: 93 EKWEFYPL-PKCVSTFLVLIPDNI------NKPVPAILCIPGSGGNKEGLAGEPGIAPKL 145
Query: 506 TSEARGILNLSIQYWTSRGWAFVDVNYGG------------STGYGREFRER---LLGR- 549
+ + G+ V V+ + Y + R LG
Sbjct: 146 NDRYKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWS 205
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVAD 609
+ ++ + R+ ++G S G + + A +
Sbjct: 206 YLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSIYAFVYNDFLCQ 265
Query: 610 LSMLRAETHKFESRYIDNLVGSEKDYYE--KSPINFVDKFSC----PIILFQGLEDKVVP 663
+ S + NF D + PIIL +G D+ +
Sbjct: 266 TQERAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNFPDIVAALAPRPIILTEGGLDRDLD 325
Query: 664 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 698
RK Y + G P + Y ++
Sbjct: 326 L--VRKAYAIV---GTPDNVKIYHYKKFSDPDTRK 355
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 37/200 (18%), Positives = 60/200 (30%), Gaps = 42/200 (21%)
Query: 532 YGGSTGYGREFRERL------------------LGRWGIVDVNDCCSCATFLVGSGKADE 573
+ G+ R E +D + G K
Sbjct: 49 FTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQRC 108
Query: 574 KRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFE--SRYIDNLVGS 631
+ + +TG S GG TL + D+ + A RY+D++
Sbjct: 109 QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSD 168
Query: 632 EKDY------YEKSPINFV--------------DKFSCPIILFQGLEDKVVPPDQARKIY 671
K+ YEK+P + D+ CP ++F ED VVPP A I+
Sbjct: 169 LKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIF 228
Query: 672 KALKENGLPVALVEYEGEQH 691
+ + +V H
Sbjct: 229 QGISST--EKEIVRLRNSYH 246
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* Length = 236 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 26/165 (15%), Positives = 41/165 (24%), Gaps = 35/165 (21%)
Query: 533 GGSTGYGREFRERLLGRWGIVD----VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTT 588
RE+ W D V D + + ++ + G S GG
Sbjct: 71 TALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQP-YSNGKVGLVGYSLGGALA 129
Query: 589 LAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 648
A + YGV + +N V +
Sbjct: 130 FLV-ASKGYVDRAVGYYGVG----------------------------LEKQLNKVPEVK 160
Query: 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
P + G +D VP + I + + YE H F
Sbjct: 161 HPALFHMGGQDHFVPAPSRQLI-TEGFGANPLLQVHWYEEAGHSF 204
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} Length = 258 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 1e-07
Identities = 37/216 (17%), Positives = 62/216 (28%), Gaps = 45/216 (20%)
Query: 479 YYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538
Y P + P+++ +G L + +W S G+ G
Sbjct: 37 YRPRDLG----QGGVRHPVILWGNGTGAG-PSTYAGL-LSHWASHGFVVAAAETSN-AGT 89
Query: 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTF 598
GRE L D + + SGK + R+ +G S GG ++ A
Sbjct: 90 GREMLACL-------DYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMA-GQDTRV 141
Query: 599 KAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLE 658
+ A + +G D + P+ L G
Sbjct: 142 RTTAPIQPYT--------------------LGLGHDSASQRRQQ------GPMFLMSGGG 175
Query: 659 DKVVPP-DQARKIYKALKENGLPVALVEYEGEQHGF 693
D + P A+ +Y+ +PV E H
Sbjct: 176 DTIAFPYLNAQPVYRRA---NVPVFWGERRYVSHFE 208
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 23/173 (13%)
Query: 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD 596
G+G +L + + + + ++ V A ++ + G S GG + AL
Sbjct: 59 GHGTVEPLDILTK---GNPDIWWAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLP 115
Query: 597 TFKAGASLYG--VADLSMLRAETHKFESRYIDNLVGSEKD-----YYEKSPINFVDKFS- 648
AG + L K+ + Y++ L G + Y + +D+F+
Sbjct: 116 GITAGGVFSSPILPGKHHLVPGFLKY-AEYMNRLAGKSDESTQILAYLPGQLAAIDQFAT 174
Query: 649 ----------CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691
P + Q +D++V A ++ AL N V Y+ +H
Sbjct: 175 TVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALI-NAARVDFHWYDDAKH 226
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 8e-07
Identities = 38/224 (16%), Positives = 59/224 (26%), Gaps = 47/224 (20%)
Query: 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 529
G YYP N Y + S G ++ I L + S G+ +
Sbjct: 79 ADGFGGGTIYYPRENNTY--------GAIAISPGYTGTQ-SSIAWLG-ERIASHGFVVIA 128
Query: 530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589
++ + + R R L +D + D RL + G S GG TL
Sbjct: 129 IDTNTTLDQP-DSRARQLNA--ALDY---MLTDASSAVRNRIDASRLAVMGHSMGGGGTL 182
Query: 590 AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC 649
+ R KA L R T
Sbjct: 183 RLASQRPDLKAAIPLTPWHLNKSWRDIT-------------------------------V 211
Query: 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
P ++ D + K + + A +E +G H
Sbjct: 212 PTLIIGAEYDTIASVTLHSKPFYNSIPSPTDKAYLELDGASHFA 255
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* Length = 318 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-06
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 570 KADEKRLCITGGSAGGY-TTLAALAFRDTFKAGASL-----YGVADLSMLRAETHKFESR 623
+ + ++G ++GGY +A+ D F G + Y A +
Sbjct: 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCAR-NQYYTSCMYNGYP 65
Query: 624 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPP---DQARKIYKALKENGLP 680
I + K + + + I ++ G D V P +Q + N
Sbjct: 66 SITTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFD-NSAN 124
Query: 681 VALVEYEGEQHGF 693
V+ V G H F
Sbjct: 125 VSYVTTTGAVHTF 137
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} Length = 274 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 20/179 (11%), Positives = 39/179 (21%), Gaps = 45/179 (25%)
Query: 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGY-TTLAALAFRD---TFKAGASLYGVADL 610
+ L + + G SAGGY + T + + YG DL
Sbjct: 78 LRTLTETFQLLNEEI-IQNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDL 136
Query: 611 SMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC--------------------- 649
++ + + + F+ ++
Sbjct: 137 EFIKEPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGD 196
Query: 650 ---------------PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
P D+ VP ++K + +H F
Sbjct: 197 WSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKK----IGRTIPESTFKAVYYLEHDF 251
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Length = 247 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 31/198 (15%), Positives = 67/198 (33%), Gaps = 33/198 (16%)
Query: 517 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576
++ S+G+ Y G+G E + D + FL G +++
Sbjct: 36 GRFLESKGYTCHAPIY---KGHGVPPEELVHTGP-DDWWQDVMNGYEFLKNKG---YEKI 88
Query: 577 CITGGSAGGYTTLAALAFRDTFKAGASL---YGVADLSMLRAETHKFESRYI------DN 627
+ G S GG +L L + + ++ + + ++ Y +
Sbjct: 89 AVAGLSLGGVFSLK-LGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEE 147
Query: 628 LVGSEKDYYEKSPINFV--------------DKFSCPIILFQGLEDKVVPPDQARKIYKA 673
+ E + ++++P+ + D P + Q D+++ PD A IY
Sbjct: 148 QIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNE 207
Query: 674 LKENGLPVALVEYEGEQH 691
++ + YE H
Sbjct: 208 IESPV--KQIKWYEQSGH 223
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A Length = 322 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 31/172 (18%), Positives = 50/172 (29%), Gaps = 52/172 (30%)
Query: 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-ALAFRDT----FKAGASLYGVAD 609
V+DC + L+ + R+ I G SAGG T A L ++ L D
Sbjct: 131 VDDCVAAYRALLKTA-GSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVD 189
Query: 610 LSMLRAETHKFESRY-------IDNLVGSEKDYYEK---------SPINFVDKFSCPIIL 653
L++ R R + + + Y SP+ + D
Sbjct: 190 LTLSRWSNSNLADRDFLAEPDTLGEMS----ELYVGGEDRKNPLISPV-YAD-------- 236
Query: 654 FQGLEDKVVPP------------DQARKIYKALKENGLPVALVEYEGEQHGF 693
GL P + + + G+ V L + H F
Sbjct: 237 LSGL-----PEMLIHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDMPHVF 283
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} Length = 208 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 3e-05
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 641 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
+ + + P ++ QG +D+VVP +Q + + PV V G H F
Sbjct: 143 FASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISS---PVEFVVMSGASHFF 192
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 30/173 (17%), Positives = 51/173 (29%), Gaps = 18/173 (10%)
Query: 446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG-G 504
+ D S + F G A Y P N ++ P +V G
Sbjct: 53 TQEWDKTFPLSAKVEHRKVTFANR-YGITLAADLYLPKNR-----GGDRLPAIVIGGPFG 106
Query: 505 PTSEARGILNLSIQYWTSRGWAFVDVNY---GGSTGYGREFRERLLGRWGIVDVNDCCSC 561
E L Q RG+ + + G S G R ++ D +
Sbjct: 107 AVKEQS--SGLYAQTMAERGFVTLAFDPSYTGESGGQPRNVA------SPDINTEDFSAA 158
Query: 562 ATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLR 614
F+ + + +R+ + G G L A+A KA + ++
Sbjct: 159 VDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRVKAVVTSTMYDMTRVMS 211
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 7e-05
Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 24/127 (18%)
Query: 572 DEKRLCITGGSAGGYTTL-AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 630
+ R+ I G S GG + A +L S + L
Sbjct: 116 KKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFAL-----------------SSF---LNK 155
Query: 631 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690
+ Y N V + G D++V A + LK G+ +
Sbjct: 156 ASAVYQALQKSNGVLP---ELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVY 212
Query: 691 HGFRKAE 697
H K E
Sbjct: 213 HELSKTE 219
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} Length = 263 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 29/149 (19%), Positives = 44/149 (29%), Gaps = 13/149 (8%)
Query: 570 KADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNL 628
+ ++ I G S GGY LA + F AS G E+ S
Sbjct: 113 TSKREKTFIAGLSMGGYGCFK-LALTTNRFSHAASFSGALSFQNFSPESQNLGSPAYWRG 171
Query: 629 VGSEKDYYEKSPINFVDKFSC-----PIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 683
V E + SP + + + G +D + K LK+ G V
Sbjct: 172 VFGEIRDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLYE--ANNLAVKNLKKLGFDVTY 229
Query: 684 VEYEGEQHGFRKAENIKFTLEQQMVFFAR 712
G H + + LE +
Sbjct: 230 SHSAGT-HEW---YYWEKQLEVFLTTLPI 254
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 Length = 262 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 39/226 (17%), Positives = 59/226 (26%), Gaps = 51/226 (22%)
Query: 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW--AF 527
G YYP ++ + +V S G + I L S+G+
Sbjct: 35 ASGFGGGTIYYPT------STADGTFGAVVISPGFTAYQ-SSIAWLG-PRLASQGFVVFT 86
Query: 528 VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587
+D N R ++ D + D RL + G S GG
Sbjct: 87 IDTNTTLDQPDSR--------GRQLLSALD--YLTQRSSVRTRVDATRLGVMGHSMGGGG 136
Query: 588 TLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 647
+L A R + KA L G + +
Sbjct: 137 SLEAAKSRTSLKAAIPLTGW-------------------------------NTDKTWPEL 165
Query: 648 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
P ++ D V P K + L A +E G H
Sbjct: 166 RTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFT 211
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 Length = 226 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 9e-05
Identities = 25/221 (11%), Positives = 55/221 (24%), Gaps = 36/221 (16%)
Query: 482 PSNPIYQASPEEKPPLLVKSHG-GPTSEARGILNLSIQYWTSRGWAFVD--VNYGGSTGY 538
++Q + P+L+ HG G +L L+ + V V G +
Sbjct: 25 MMKHVFQKGKDTSKPVLLLLHGTG--GNELDLLPLAEIVDSEASVLSVRGNVLENGMPRF 82
Query: 539 GREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-ALAFRD 596
R E + ++ + K D + G S G + + +
Sbjct: 83 FRRLAEGIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYEN 142
Query: 597 TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQG 656
K + + + + + + G
Sbjct: 143 ALKGAVLHHP----------------------------MVPRRGMQLANLAGKSVFIAAG 174
Query: 657 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
D + ++ ++ L+ V + H E
Sbjct: 175 TNDPICSSAESEELKVLLENANANVTMHWENRG-HQLTMGE 214
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A Length = 322 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 48/170 (28%)
Query: 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-ALAFRDT----FKAGASLYGVAD 609
V D + +L+ G + L I+G SAGG LA ++ RD + + AD
Sbjct: 131 VEDGVAAYRWLLDQG-FKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWAD 189
Query: 610 LSMLRAETHKFESRYIDNLVGSEK-----DYY---------EKSPINFVDKFSCPIILFQ 655
++ D +V Y SP F + +
Sbjct: 190 MTCTNDSFKTRAEA--DPMVAPGGINKMAARYLNGADAKHPYASPN-FAN--------LK 238
Query: 656 GLEDKVVPP------------DQARKIYKALKENGLPVALVEYEGEQHGF 693
GL PP D + K+ K +G+ L ++ H +
Sbjct: 239 GL-----PPLLIHVGRDEVLLDDSIKLDAKAKADGVKSTLEIWDDMIHVW 283
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Length = 695 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
+D + A +LV KRL I GGS GG AA+ R + + A + D M+R
Sbjct: 507 DDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLD--MVR 564
Query: 615 AETHKFES 622
H F S
Sbjct: 565 --YHLFGS 570
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* Length = 218 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 29/126 (23%), Positives = 36/126 (28%), Gaps = 24/126 (19%)
Query: 572 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 631
D R+ + G S GG G GV LS Y +
Sbjct: 104 DASRIFLAGFSQGGAVVFHTAFINWQGPLG----GVIALS-----------TYA----PT 144
Query: 632 EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691
D E S P + G D VV R ++ LK G+ V EY H
Sbjct: 145 FGDELELSASQQ----RIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYPMG-H 199
Query: 692 GFRKAE 697
E
Sbjct: 200 EVLPQE 205
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 Length = 251 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 30/127 (23%)
Query: 572 DEKRLCITGGSAGGYTTLA-ALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 630
+ G S G + + F A ++
Sbjct: 139 QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHP------------------------ 174
Query: 631 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690
P K + +++ G D + P + + ++LK G V V + G
Sbjct: 175 ----LIPFEPKISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPGG- 229
Query: 691 HGFRKAE 697
H R E
Sbjct: 230 HEIRSGE 236
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} Length = 326 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 27/175 (15%), Positives = 52/175 (29%), Gaps = 51/175 (29%)
Query: 555 VNDCCSCATFLVGSGK---ADEKRLCITGGSAGGYTTLAA---LAFRDTFKAGASL---- 604
+ + + ++ + +++ G SAG LA L RD ++
Sbjct: 138 IEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGA--MLALASALWLRDKHIRCGNVIAIL 195
Query: 605 --YGVADL-----SMLRAETHKFESR-----YIDNLVGSEKDYYEK--SPINFVDKFSCP 650
YG+ L L +R Y + +++D N
Sbjct: 196 LWYGLYGLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNNDL----- 250
Query: 651 IILFQGLEDKVVPP------------DQARKIYKALKENGLPVALVEYEGEQHGF 693
+ + PP D +R +++ L+ + P Y G H F
Sbjct: 251 ---TRDV-----PPCFIASAEFDPLIDDSRLLHQTLQAHQQPCEYKMYPGTLHAF 297
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} Length = 209 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
+ L D +VP + L+++G + + E H + E
Sbjct: 151 HVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESSLG-HQLTQEE 197
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 Length = 763 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 6e-04
Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 71/298 (23%)
Query: 441 FKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVK 500
VV ++SP L + L + E+ + ++ + P ++ ++ P++ K
Sbjct: 201 LPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDK 260
Query: 501 SHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG---STGYGREFRERLLGRWGIVDVND 557
+ T LN Y+ +RG+A + V G S G +
Sbjct: 261 APYRFTHGWTYSLN---DYFLTRGFASIYVAGVGTRSSDG--------FQTSGDYQQIYS 309
Query: 558 CCSCATFLVGSGKAD--------------EKRLCITGGSAGGYTTLAALAFR-DTFKAGA 602
+ +L G +A ++ +TG S G A + +
Sbjct: 310 MTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELIL 369
Query: 603 SLYGVADL-----------------------------------------SMLRAETHKFE 621
+ G++ + +
Sbjct: 370 AEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEM 429
Query: 622 SRYIDNLVGSEKDYY-EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG 678
+ +D G ++ +++ + DK +++ GL+D V P+QA +KAL E
Sbjct: 430 TAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEGH 487
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* Length = 268 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 45/244 (18%)
Query: 479 YYPPSNPIYQASPEEKPPLLVKSHGGP---------TSEARGILNLSIQYWTSRGWAFVD 529
Y PP S ++K +L HG A I + I + V
Sbjct: 51 YLPP-----GYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVT 105
Query: 530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589
N + G G + + + + + V D + I G S GG +
Sbjct: 106 PN-TNAAGPGIADGYENFTKDLLNSLIPYI-ESNYSV---YTDREHRAIAGLSMGGGQSF 160
Query: 590 -AALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 648
L D F + + T+ E + D + +
Sbjct: 161 NIGLTNLDKFAYIGPISAAPN-------TYPNERLFPDGGKAAREKLK------------ 201
Query: 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 708
+ + G D ++ +++++ N + +G H F K L +
Sbjct: 202 -LLFIACGTNDSLIGF--GQRVHEYCVANNINHVYWLIQGGGHDF---NVWKPGLWNFLQ 255
Query: 709 FFAR 712
Sbjct: 256 MADE 259
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} Length = 377 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 8e-04
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE-YEGEQHGFRKAENIKFTLEQQMV 708
P++L D+ VP A Y + ++ V + + H + F L++Q+
Sbjct: 309 PLLLVGTKGDRDVPYAGAEMAYHSFRKYSDFVWIKSVSDALDHV----QAHPFVLKEQVD 364
Query: 709 FFARVVG 715
FF +
Sbjct: 365 FFKQFER 371
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 732 | |||
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.92 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.91 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.91 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.91 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.9 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.89 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.89 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.89 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.89 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.89 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.89 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.89 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.89 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.89 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.89 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.89 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.89 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.89 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.88 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.88 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.88 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.88 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.87 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.87 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.87 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.87 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.87 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.87 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.87 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.87 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.86 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.86 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.86 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.86 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.86 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.86 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.86 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.86 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.86 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.86 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.85 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.85 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.85 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.85 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.85 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.84 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.84 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.84 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.84 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.84 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.84 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.84 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.83 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.83 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.83 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.83 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.83 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.83 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.82 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.82 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.82 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.82 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.82 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.81 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.81 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.81 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.81 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.81 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.81 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.8 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.8 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.8 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.8 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.79 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.79 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.79 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.79 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.79 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.78 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.78 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.78 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.78 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.78 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.77 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.77 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.77 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.77 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.77 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.77 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.76 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.76 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.76 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.75 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.75 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.75 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.74 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.74 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.74 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.74 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.74 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.74 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.74 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.74 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.74 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.74 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.74 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.74 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.74 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.74 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.73 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.73 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.73 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.73 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.73 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.73 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.73 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.73 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.73 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.73 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.73 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.72 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.72 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.72 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.72 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.71 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.71 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.71 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.71 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.71 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.71 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.71 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.71 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.71 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.71 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.71 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.7 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.7 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.7 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.7 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.7 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.69 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.69 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.69 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.69 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.69 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.69 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.68 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.68 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.68 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.68 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.68 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.68 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.68 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.67 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.67 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.67 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.67 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.67 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.66 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.66 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.65 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.65 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.65 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.65 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.65 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.65 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.65 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.65 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.64 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.64 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.64 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.64 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.63 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.63 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.63 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.63 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.63 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.63 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.63 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.62 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.62 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.62 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.62 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.62 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.62 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.62 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.61 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.61 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.6 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.6 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.6 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.6 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.59 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.59 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.59 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.59 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.59 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.58 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.58 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.57 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.54 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.53 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.52 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.51 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.27 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.51 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.49 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.49 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.49 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.49 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.49 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.48 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.47 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.45 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.45 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.45 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.45 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.44 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.43 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.38 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.36 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.35 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.35 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.33 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.33 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.32 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.32 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.31 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.31 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.3 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.3 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.29 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.27 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.27 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.26 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.24 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.23 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.22 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.2 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.19 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.19 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.18 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.18 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.18 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 99.14 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.14 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.14 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.11 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 99.11 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.09 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.09 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 99.07 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 99.05 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.05 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.05 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.04 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.03 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.02 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.01 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.01 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.99 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.97 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.97 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 98.97 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 98.95 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.95 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.95 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 98.93 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.91 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.91 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.9 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.9 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.9 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.89 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.89 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.88 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.88 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.87 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.87 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 98.87 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.86 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.86 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.86 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.85 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.83 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.83 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.83 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.82 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.82 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.82 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.82 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.82 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.82 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.81 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.81 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.8 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.79 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.79 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.79 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.79 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.78 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.78 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.78 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.78 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.78 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.77 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.77 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 98.77 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.76 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.76 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.76 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.75 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.75 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.74 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.74 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 98.74 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.73 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.72 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.72 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.71 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.71 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.7 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.7 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.69 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.69 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.68 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.68 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.68 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.68 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.68 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.67 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.67 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.66 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.65 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.65 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.65 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.64 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.64 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.64 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.64 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.64 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.64 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.63 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.62 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.62 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.62 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.62 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.61 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.61 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.6 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.6 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.6 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.59 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.58 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.58 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.58 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.58 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.56 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.56 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.56 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.55 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.55 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.54 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.53 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.52 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.51 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.49 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.48 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.46 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.45 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.45 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.45 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.44 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.44 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.44 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.43 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.43 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.42 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.41 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.41 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.4 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.4 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.39 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.38 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.38 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.37 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.36 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.36 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.34 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.33 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.33 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.33 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.33 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.32 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.31 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.3 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.3 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.29 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.29 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.27 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.26 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.26 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.25 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.25 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.24 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.24 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.24 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.23 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.22 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.21 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.21 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.21 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.2 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.2 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 98.2 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.18 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.18 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.18 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.18 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.17 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.17 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.15 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.15 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.15 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.15 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.13 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.11 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.11 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.1 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.09 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.09 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.08 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.08 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.08 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.07 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.07 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.06 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.05 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.98 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.96 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.94 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.93 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.93 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.93 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.87 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.86 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.86 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.86 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.85 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.84 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.84 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.78 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.76 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.72 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.68 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.68 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 97.65 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.64 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.63 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.61 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.55 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.54 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.53 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.52 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.51 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.49 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.47 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.42 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 97.36 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.35 |
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-69 Score=621.83 Aligned_cols=637 Identities=34% Similarity=0.628 Sum_probs=528.7
Q ss_pred ccCCCCCCCCcCCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC
Q 004735 68 ITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG 147 (732)
Q Consensus 68 ~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~ 147 (732)
+++|||+|.+|++++.+......+..|+++ ++.++|+..++.++++..||....+ +..+.++....+++..+++|++
T Consensus 3 ~~~~~g~w~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~ 79 (662)
T 3azo_A 3 STAPYGAWQSPIDAALVASRSGRPACVGAV-GDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSG 79 (662)
T ss_dssp EECCTTCCCCSCCHHHHHHTCSCCEEEEEE-TTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCC
T ss_pred ccCCCcCCCCCCCHHHHhhcCCccceeEEc-CCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCC
Confidence 678999999999999999988889999999 8899999998777889999987433 4778888877788888999999
Q ss_pred ceeEEE----CCE-EEEEeCCCCeEEEEeCC--CCCCCceecCCCCCC-CCeEeeceeecCCCCEEEEEEeccCC-CCCC
Q 004735 148 GAFRIF----GDT-VIFSNYKDQRLYKHSID--SKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQ-DALN 218 (732)
Q Consensus 148 ~~~~~~----~~~-i~f~~~~~~~l~~~d~~--~~~~~~~~lt~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~-~~~~ 218 (732)
..+.++ ++. |+|+...+.+||+++++ +. +..++|+..... .......++|||||++|+|++.+... .+..
T Consensus 80 ~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~-~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 80 FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGG-AVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTC-CCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred ccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCC-CCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 888555 668 99998777899999987 21 467888873210 14577889999999999998875321 1112
Q ss_pred ceeEEEEEEcCC------CCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeE-
Q 004735 219 STTEIVAIALNG------QNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV- 290 (732)
Q Consensus 219 ~~~~l~~~d~~~------~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~- 290 (732)
...+||++|+++ ++ .++|+ .+...+..|+|||||++|+|.+++.+.++|...+||++|++.+|+....+
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred ceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 247999999998 77 88898 77788889999999999999998888889988999999998336332233
Q ss_pred EecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCE
Q 004735 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL 370 (732)
Q Consensus 291 ~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 370 (732)
+..+.. ..+..+.|||||+++|.++. .+..+||++|+++++.+.++........|.|+++...+.|. +++.
T Consensus 236 l~~~~~----~~~~~~~~spdg~l~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~----~~~~ 306 (662)
T 3azo_A 236 LLGGPE----EAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL----ANGL 306 (662)
T ss_dssp EEEETT----BCEEEEEECTTSCEEEEECT-TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC----TTSC
T ss_pred eCCCCC----ceEcceEECCCCeEEEEECC-CCCeEEEEEECCCCceeecccccccccCccccccCceEeEe----CCCE
Confidence 333323 55678999999998888887 67789999999899999998776677789999888888887 5566
Q ss_pred EEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCC
Q 004735 371 IACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSP 449 (732)
Q Consensus 371 l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~ 449 (732)
+++++.+ +..+||.+++++++.++|+.+...+..+ +.+++.+++.+++.+.+.+||++|+++++.++|+ ..+
T Consensus 307 ~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~------~~~ 379 (662)
T 3azo_A 307 IAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG------ARH 379 (662)
T ss_dssp EEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE------SCC
T ss_pred EEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee------cCC
Confidence 7788777 8899999999999999998877777777 7788899999999999999999999999876554 222
Q ss_pred CCccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEE
Q 004735 450 DTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVD 529 (732)
Q Consensus 450 ~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~ 529 (732)
...+....+..++.+.+... +|..++++++.|.+..+.++++++.|+||++||+++......+...++.|+++||.|++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~-dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~ 458 (662)
T 3azo_A 380 TDPVDPAYYPEPQIRTFTAP-DGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVAD 458 (662)
T ss_dssp CCSSCGGGSCCCEEEEEECT-TSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEE
T ss_pred cccCCccccCcceEEEEEcC-CCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEE
Confidence 34556667778899999987 89999999999986322222246789999999998777666788889999999999999
Q ss_pred EcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCC
Q 004735 530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVAD 609 (732)
Q Consensus 530 ~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d 609 (732)
+|+||++++|.++.......++..+++|+.++++++++++.+|.+|++|+|||+||++++.++.+|++|+++|+.+|+.+
T Consensus 459 ~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~v~~~~~~~ 538 (662)
T 3azo_A 459 VNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVSTDVYACGTVLYPVLD 538 (662)
T ss_dssp EECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCCCCSEEEEESCCCC
T ss_pred ECCCCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhCcCceEEEEecCCccC
Confidence 99999999999998887778887889999999999999988999999999999999999998888999999999999999
Q ss_pred HHHHHh-hcchhhhhhhhhhcC----ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEE
Q 004735 610 LSMLRA-ETHKFESRYIDNLVG----SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684 (732)
Q Consensus 610 ~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (732)
+..+.. ....+...++...++ +.+.|...+|+.++.++++|+|++||++|.++|+.++++++++|++.|++++++
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 618 (662)
T 3azo_A 539 LLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYL 618 (662)
T ss_dssp HHHHHTTCSCGGGTTHHHHHTCCTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHTTSCCCEEEE
T ss_pred HHHHhcccccchhhHhHHHHhCCCccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 887655 344444444444443 456788889999999999999999999999999999999999999999999999
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHHHHhCCCCCCCCCCcccccC
Q 004735 685 EYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADEIIPIKIDN 730 (732)
Q Consensus 685 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~~ 730 (732)
++++++|++...++..+.++.+++||.++|+..++ .+|+|+++|
T Consensus 619 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~--~~~~~~~~~ 662 (662)
T 3azo_A 619 SFEGEGHGFRRKETMVRALEAELSLYAQVFGVEVA--GVPLLKLGE 662 (662)
T ss_dssp EETTCCSSCCSHHHHHHHHHHHHHHHHHHTTCCCC--SSCCCCCBC
T ss_pred EECCCCCCCCChHHHHHHHHHHHHHHHHHhCCCCC--CCCccccCC
Confidence 99999999877778889999999999999985443 389999886
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-54 Score=499.99 Aligned_cols=583 Identities=16% Similarity=0.154 Sum_probs=419.4
Q ss_pred cCCHHHHhccC--CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCc--eeEE-
Q 004735 78 PLTADVVSGAS--KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG--AFRI- 152 (732)
Q Consensus 78 ~~~~~~i~~~~--~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~--~~~~- 152 (732)
++|+|.+.... .....++|+|++.+++.. ++. |+.++..+| +.+.++... ... .+... .+++
T Consensus 4 ~~tl~~~~~~~~~~~~~~~~w~~dg~~~~~~-----~~~--i~~~~~~~~-~~~~~~~~~-~~~----~~~~~~~~~~~S 70 (740)
T 4a5s_A 4 TYTLTDYLKNTYRLKLYSLRWISDHEYLYKQ-----ENN--ILVFNAEYG-NSSVFLENS-TFD----EFGHSINDYSIS 70 (740)
T ss_dssp ECCHHHHHHTCSCCCCCCEEECSSSEEEEEE-----TTE--EEEEETTTC-CEEEEECTT-TTT----TCCSCCCEEEEC
T ss_pred ceeHHHHhcCcccccccccEECCCCcEEEEc-----CCc--EEEEECCCC-ceEEEEech-hhh----hhcccccceEEC
Confidence 58899998873 234689999933444433 254 444445544 444443322 111 11121 2444
Q ss_pred -ECCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 153 -FGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 153 -~~~~i~f~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
++..|+|.... .+++|++|+++ ++.++|+... .....++|||||++|+|+.+ .+|
T Consensus 71 pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~--~~~~~l~~~~----~~~~~~~~SPdG~~la~~~~----------~~i 134 (740)
T 4a5s_A 71 PDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLITEERIP----NNTQWVTWSPVGHKLAYVWN----------NDI 134 (740)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC----TTEEEEEECSSTTCEEEEET----------TEE
T ss_pred CCCCEEEEEECCeeeEEEccceEEEEEECCC--CcEEEcccCC----CcceeeEECCCCCEEEEEEC----------CeE
Confidence 45578887642 15799999998 8888888652 23567899999999999964 589
Q ss_pred EEEEcCCCCccccEEcccCCC-------------------ceeccccCCCCCeEEEEeccCCCC----------------
Q 004735 224 VAIALNGQNIQEPKVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPNM---------------- 268 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~-------------------~~~~p~~SPDG~~la~~~~~~~~~---------------- 268 (732)
|++++++++ .++|+.... ....+.|||||++|||.+.+....
T Consensus 135 ~~~~~~~~~---~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~ 211 (740)
T 4a5s_A 135 YVKIEPNLP---SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYP 211 (740)
T ss_dssp EEESSTTSC---CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSC
T ss_pred EEEECCCCc---eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCC
Confidence 999999998 888875332 112478999999999998654421
Q ss_pred ------------CCCccEEEEEEecCC---Cce-eeeEEec-----CCCCCccccCcCceeCCCCc-EEEEEeccCCeee
Q 004735 269 ------------PWDKAELWVGYISEN---GDV-YKRVCVA-----GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN 326 (732)
Q Consensus 269 ------------~~~~~~l~v~d~~~~---g~~-~~~~~~~-----~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~ 326 (732)
+....+|+++|++ + |+. +..++.. +.+ .++..+.|||||+ +++..++.++...
T Consensus 212 ~~~~~~yp~~G~~~~~~~l~v~d~~-~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~wspdg~~~~~~~~r~~~~~~ 286 (740)
T 4a5s_A 212 KTVRVPYPKAGAVNPTVKFFVVNTD-SLSSVTNATSIQITAPASMLIGD----HYLCDVTWATQERISLQWLRRIQNYSV 286 (740)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEETT-SCCSSSCCCEEEECCCHHHHTSC----EEEEEEEEEETTEEEEEEEESSTTEEE
T ss_pred cceeecCCCCcCcCCeeEEEEEECC-CCCCCCcceEEEecCCccCCCCC----eEEEEEEEeCCCeEEEEEeCCCCCEEE
Confidence 1123479999998 6 621 1122222 133 6778899999999 7777777556778
Q ss_pred EEEEeccCCe-------EEEeccc--ccc-----cCCCceeecccceeeeeecCCCCEEE-EEEEECCEEEEEEEECCCC
Q 004735 327 LHKWIESNNE-------VLAIYSL--DAE-----FSRPLWVFGINSYEIIQSHGEKNLIA-CSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 327 l~~~d~~~g~-------~~~l~~~--~~~-----~~~~~w~~~~~~~~~~~~~~~~~~l~-~~s~~~g~~~ly~~~~~~~ 391 (732)
|+++|+++|+ .+.++.+ ... ...|.|++ ||+.|+ +.++++|..+||+++.+++
T Consensus 287 i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp------------DG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 287 MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL------------DGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT------------TSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC------------CCCEEEEEEEcCCCceEEEEEECCCC
Confidence 9999999987 2233211 111 12455554 888877 8888999999999999999
Q ss_pred ceEEeccCCCceEEe-eEeCCEEEEEEeC--C-CCCcEEEEEEcCCCcce-eeee----------EEEecCCCC------
Q 004735 392 SLSLLDIPFTDIDNI-TLGNDCLFVEGAS--G-VEPSSVAKVTLDDHKLK-AVDF----------KVVWSSSPD------ 450 (732)
Q Consensus 392 ~~~~lt~~~~~v~~~-~~~~~~~~~~~~~--~-~~~~~ly~~dl~~~~~~-~lt~----------~~~~~~~~~------ 450 (732)
+.++||.+.+.+..+ ..+++.++|.+.. . ....+||++++++++.+ +||. ...++....
T Consensus 355 ~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 355 DCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp SCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred ceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence 999999999888776 3455656555543 1 23456999999877653 5551 122221110
Q ss_pred -----Cc--c----------------------CCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEE
Q 004735 451 -----TL--K----------------------YKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKS 501 (732)
Q Consensus 451 -----~~--~----------------------~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~ 501 (732)
+. + ....+..++.+.+ .. +|..++++++.|++.. +.++.|+||++
T Consensus 435 s~~~~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~-dg~~l~~~~~~P~~~~----~~~~~P~vv~~ 508 (740)
T 4a5s_A 435 SGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-IL-NETKFWYQMILPPHFD----KSKKYPLLLDV 508 (740)
T ss_dssp CSBSSCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-EE-TTEEEEEEEEECTTCC----TTSCEEEEEEC
T ss_pred CCCCCCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-cc-CCeEEEEEEEeCCCCC----CCCCccEEEEE
Confidence 00 0 0011233455566 55 8999999999998732 35678999999
Q ss_pred cCCCCCcc---CCcccHHHHHHH-HCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEE
Q 004735 502 HGGPTSEA---RGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 577 (732)
Q Consensus 502 HGg~~~~~---~~~~~~~~~~l~-~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 577 (732)
||+++... .+.+... ..++ ++||+|+++|+||++++|..+.......++..+++|+.+++++|.+++.+|++||+
T Consensus 509 HGg~~~~~~~~~~~~~~~-~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 587 (740)
T 4a5s_A 509 YAGPCSQKADTVFRLNWA-TYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIA 587 (740)
T ss_dssp CCCTTCCCCCCCCCCSHH-HHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCcccccccccCcCHH-HHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEE
Confidence 99987642 2222333 4455 58999999999999999999998888888888899999999999988888999999
Q ss_pred EEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhh--cCChhhhhhcCccccCCCCCC-CEEE
Q 004735 578 ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL--VGSEKDYYEKSPINFVDKFSC-PIIL 653 (732)
Q Consensus 578 i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~-P~Li 653 (732)
|+|||+||++++.++. +|++|+++++.+|+.++..+.. .+..+++... ..+.+.|...+|+..++++++ |+|+
T Consensus 588 i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Li 664 (740)
T 4a5s_A 588 IWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDS---VYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLL 664 (740)
T ss_dssp EEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBH---HHHHHHHCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEE
T ss_pred EEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhhh---HHHHHHcCCCCccccHHHHHhCCHHHHHhcCCCCcEEE
Confidence 9999999999999999 9999999999999998764321 1223333322 235577888999999999986 9999
Q ss_pred EEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCCCC
Q 004735 654 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDV 719 (732)
Q Consensus 654 i~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 719 (732)
+||++|.+||++++.+++++|++.+++++++++++++|++...+.....++.+.+||+++|+..++
T Consensus 665 i~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~~ 730 (740)
T 4a5s_A 665 IHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLPAA 730 (740)
T ss_dssp EEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred EEcCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCccHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999877778889999999999999985433
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-52 Score=471.28 Aligned_cols=536 Identities=19% Similarity=0.159 Sum_probs=414.0
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCC---CC-
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK---DQ- 165 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~---~~- 165 (732)
+..+.++| |+.++|...+ +|...||..+ |++.+.++.... ......++++++++|.... +.
T Consensus 24 ~~~~~~~~DG~~la~~s~~---~g~~~lw~~~---~g~~~~lt~~~~--------~~~~~~~~spd~~l~~~~~~~g~~~ 89 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFS---EGSVNAYLYD---GGETVKLNREPI--------NSVLDPHYGVGRVILVRDVSKGAEQ 89 (582)
T ss_dssp EEEEEEEETTTEEEEEEEE---TTEEEEEEEE---TTEEEECCSSCC--------SEECEECTTCSEEEEEEECSTTSCC
T ss_pred hheeecCCCCCeEEEEEcc---CCceeEEEEc---CCCcEeeecccc--------cccccccCCCCeEEEEeccCCCCcc
Confidence 45788899 9999998754 3677888862 235666654321 1122334455678887654 22
Q ss_pred -eEEEEeC--CCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC
Q 004735 166 -RLYKHSI--DSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (732)
Q Consensus 166 -~l~~~d~--~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~ 242 (732)
+||.+++ + +..++++... ... ..+|||||+.++++..... .+.++|+++++ .++++..
T Consensus 90 ~~l~~~~~~~~---g~~~~l~~~~---~~~--~~~~s~dg~~~~~~s~~~~--------~~~l~d~~~g~---~~~l~~~ 150 (582)
T 3o4h_A 90 HALFKVNTSRP---GEEQRLEAVK---PMR--ILSGVDTGEAVVFTGATED--------RVALYALDGGG---LRELARL 150 (582)
T ss_dssp EEEEEEETTST---TCCEECTTSC---SBE--EEEEEECSSCEEEEEECSS--------CEEEEEEETTE---EEEEEEE
T ss_pred eEEEEEeccCC---CccccccCCC---Cce--eeeeCCCCCeEEEEecCCC--------CceEEEccCCc---EEEeecC
Confidence 7999998 5 4445776552 222 4579999998888765432 23356888888 7888765
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 321 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~ 321 (732)
.. ..+.|||||++|++.+.+..+ ...||++|++ +|+.+ .+.... ..+..+.|||||+ |+ .++.
T Consensus 151 ~~--~~~~~spDG~~la~~~~~~~~----~~~i~~~d~~-~g~~~---~l~~~~----~~~~~~~~SpDG~~l~-~~~~- 214 (582)
T 3o4h_A 151 PG--FGFVSDIRGDLIAGLGFFGGG----RVSLFTSNLS-SGGLR---VFDSGE----GSFSSASISPGMKVTA-GLET- 214 (582)
T ss_dssp SS--CEEEEEEETTEEEEEEEEETT----EEEEEEEETT-TCCCE---EECCSS----CEEEEEEECTTSCEEE-EEEC-
T ss_pred CC--ceEEECCCCCEEEEEEEcCCC----CeEEEEEcCC-CCCce---EeecCC----CccccceECCCCCEEE-EccC-
Confidence 54 678999999999998855432 3569999998 77763 334443 4567899999999 55 6665
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCc--------eeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPL--------WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~--------w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
.+..+|+++|+++++.+.+......+..+. |++ |+ .++++...++..+||.+ |+.
T Consensus 215 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------------dg-~~~~~~~~~g~~~l~~~----g~~ 277 (582)
T 3o4h_A 215 AREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP------------DG-RLAVVARREGRSAVFID----GER 277 (582)
T ss_dssp SSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECT------------TS-CEEEEEEETTEEEEEET----TEE
T ss_pred CCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcC------------CC-cEEEEEEcCCcEEEEEE----CCe
Confidence 677899999999998883333333333444 554 66 88999999999889876 444
Q ss_pred EEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCccCC---CCCCCcEEEEeeccC
Q 004735 394 SLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYK---SYFSLPELIEFPTEV 470 (732)
Q Consensus 394 ~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~ 470 (732)
.. .....+..+...++++++..++...+.++|++|+++ +.++| .+.+ ..+...+.+++++.
T Consensus 278 ~~--~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~~-~~~~l------------~~~~~~~~~~~~~~~~~~~~~- 341 (582)
T 3o4h_A 278 VE--APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGE-PLLEG------------GLPEDLRRSIAGSRLVWVESF- 341 (582)
T ss_dssp EC--CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETTCC-EEECC------------CCCHHHHHTEEEEEEEEEECT-
T ss_pred ec--cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcCCC-ceEEE------------ecCCccccccCcceEEEEECC-
Confidence 33 223456666322788889999999999999999765 54333 1222 45667789999997
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.+++++++.|++. ..+.|+||++||+++......+...++.|+++||.|+++|+||++++|.++.......+
T Consensus 342 ~g~~i~~~~~~p~~~------~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~~~ 415 (582)
T 3o4h_A 342 DGSRVPTYVLESGRA------PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDP 415 (582)
T ss_dssp TSCEEEEEEEEETTS------CSSEEEEEEECSSSSCCCCSSCCHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCT
T ss_pred CCCEEEEEEEcCCCC------CCCCcEEEEECCCcccccccccCHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhhhc
Confidence 899999999999862 33789999999998776677788899999999999999999999999999988888888
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhc
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV 629 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~ 629 (732)
+...++|+.++++++.+++.+| +++|+|||+||++++.++. +|++++++++.+|+.++..+..........+....+
T Consensus 416 ~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (582)
T 3o4h_A 416 CGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLT 493 (582)
T ss_dssp TTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHHHHc
Confidence 8788999999999999997777 9999999999999999998 899999999999999988776554443333333333
Q ss_pred C-ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 004735 630 G-SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 708 (732)
Q Consensus 630 ~-~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 708 (732)
+ +.+.+...+|+.++.++++|+|++||++|.++|+.+++++++++++.|++++++++++++|.+..++...+.++.+++
T Consensus 494 ~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~ 573 (582)
T 3o4h_A 494 GGSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVF 573 (582)
T ss_dssp TTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCCBHHHHHHHHHHHHH
T ss_pred CcCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcCHHHHHHHHHHHHhCCCCEEEEEECCCCCCCCChHHHHHHHHHHHH
Confidence 3 567888999999999999999999999999999999999999999999999999999999998877888899999999
Q ss_pred HHHHHhCC
Q 004735 709 FFARVVGH 716 (732)
Q Consensus 709 fl~~~l~~ 716 (732)
||+++|++
T Consensus 574 fl~~~l~~ 581 (582)
T 3o4h_A 574 FLATQRER 581 (582)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99999973
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-51 Score=477.49 Aligned_cols=587 Identities=18% Similarity=0.232 Sum_probs=424.9
Q ss_pred CCcCCHHHHhcc----CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcc------------
Q 004735 76 KSPLTADVVSGA----SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAV------------ 138 (732)
Q Consensus 76 ~~~~~~~~i~~~----~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~------------ 138 (732)
..+|++++++.. ...+..++||| |+.+++...++++.....|+.++..+| +.+.++......
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (741)
T 2ecf_A 20 AEKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKA 98 (741)
T ss_dssp --CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC------------
T ss_pred cccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhh
Confidence 467999999953 34567899999 999999876443334556777776654 444444321000
Q ss_pred ---cccccc-cCCceeEE--ECCEEEEEeCCCCeEEEEeCCCCCC---CceecCCCCCCCCeEeeceeecCCCCEEEEEE
Q 004735 139 ---RTTAQE-YGGGAFRI--FGDTVIFSNYKDQRLYKHSIDSKDS---SPLPITPDYGEPLVSYADGIFDPRFNRYVTVR 209 (732)
Q Consensus 139 ---~~~~~~-~g~~~~~~--~~~~i~f~~~~~~~l~~~d~~~~~~---~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~ 209 (732)
+.++.. .+...+++ ++..|+|... +.||++|+++ + ..++++.. ......++|||||++|+|+.
T Consensus 99 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~--~~i~~~d~~~--~~~~~~~~l~~~----~~~~~~~~~SPDG~~la~~~ 170 (741)
T 2ecf_A 99 RRERQRIAAMTGIVDYQWSPDAQRLLFPLG--GELYLYDLKQ--EGKAAVRQLTHG----EGFATDAKLSPKGGFVSFIR 170 (741)
T ss_dssp --------CCEESCCCEECTTSSEEEEEET--TEEEEEESSS--CSTTSCCBCCCS----SSCEEEEEECTTSSEEEEEE
T ss_pred hhhhhhhccccCcceeEECCCCCEEEEEeC--CcEEEEECCC--CCcceEEEcccC----CcccccccCCCCCCEEEEEe
Confidence 000000 11233444 4557888865 7899999997 7 77788765 33457789999999999986
Q ss_pred eccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc-----------------eeccccCCCCCeEEEEeccCCCCC---
Q 004735 210 EDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-----------------YAFPRMDPRGERMAWIEWHHPNMP--- 269 (732)
Q Consensus 210 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~-----------------~~~p~~SPDG~~la~~~~~~~~~~--- 269 (732)
. .+|+++|+++++ .++++..... ...+.|||||++|+|.+.+....+
T Consensus 171 ~----------~~i~~~d~~~g~---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 171 G----------RNLWVIDLASGR---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp T----------TEEEEEETTTTE---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE
T ss_pred C----------CcEEEEecCCCC---EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe
Confidence 4 489999999988 7777654321 356899999999999875542110
Q ss_pred ----------------------CCccEEEEEEecCC-Cceeee-------------------------------------
Q 004735 270 ----------------------WDKAELWVGYISEN-GDVYKR------------------------------------- 289 (732)
Q Consensus 270 ----------------------~~~~~l~v~d~~~~-g~~~~~------------------------------------- 289 (732)
....+|+++|++ + |+...+
T Consensus 238 ~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~ 316 (741)
T 2ecf_A 238 RYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA-EQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVE 316 (741)
T ss_dssp EEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS-TTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEE
T ss_pred cCCCCCCcccceEeecCCCCCCCCeeEEEEEECC-CCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEE
Confidence 012256666655 4 322110
Q ss_pred ---------EEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCC-ceeecccce
Q 004735 290 ---------VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-LWVFGINSY 359 (732)
Q Consensus 290 ---------~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~-~w~~~~~~~ 359 (732)
.++......|...+..+.|+|||++++.+.. .|..+||.++.+++ .+.++.....+... .|++
T Consensus 317 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~----- 389 (741)
T 2ecf_A 317 VTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSER-TGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE----- 389 (741)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECT-TSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-----
T ss_pred EECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecC-CCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-----
Confidence 0111111011113357899999997777776 78889999998777 77777554333333 2443
Q ss_pred eeeeecCCCCEEEEEEEECC--EEEEEEEECCCCceEEeccCCCceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 360 EIIQSHGEKNLIACSYRQNG--RSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 360 ~~~~~~~~~~~l~~~s~~~g--~~~ly~~~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+++.|++.+..++ ..+||.++.+++..++|+.. ..+..+ +.+++.+++..++...|.++|+++++++.
T Consensus 390 -------dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 390 -------KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKA-PGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp -------TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCS-CSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred -------CCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccC-CCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 7888988887666 77899999888878888873 334444 56677888888888899999999987776
Q ss_pred ceeeeeEEEecCCCC---C-ccCCC--CCCCcEEEEeeccCCC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCc
Q 004735 436 LKAVDFKVVWSSSPD---T-LKYKS--YFSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE 508 (732)
Q Consensus 436 ~~~lt~~~~~~~~~~---~-~~~~~--~~~~~~~i~~~~~~~g-~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~ 508 (732)
.+.|+ .+.. . .+.+. .+..++.+++++. +| ..++++++.|.+.. +.++.|+||++||++...
T Consensus 462 ~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~l~~~~~~P~~~~----~~~~~p~vv~~hG~~~~~ 530 (741)
T 2ecf_A 462 IATLV------ENDLADPKHPYARYREAQRPVEFGTLTAA-DGKTPLNYSVIKPAGFD----PAKRYPVAVYVYGGPASQ 530 (741)
T ss_dssp EECSS------CCCSSSTTSTTHHHHTTCCCEEEEEEECT-TSSCEEEEEEECCSSCC----TTSCEEEEEECCCSTTCC
T ss_pred EEEec------cCcccccccchhhhhccCCCcEEEEEEcC-CCCEEEEEEEEeCCCCC----CCCCcCEEEEEcCCCCcc
Confidence 54443 2211 0 23333 5678899999997 89 99999999997632 245679999999987654
Q ss_pred cC-Cccc-----HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 004735 509 AR-GILN-----LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGS 582 (732)
Q Consensus 509 ~~-~~~~-----~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S 582 (732)
.. ..|. ..++.|+++||.|+++|+||+++++..+.......++..+++|+.++++++.+++.+|.++++|+|||
T Consensus 531 ~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S 610 (741)
T 2ecf_A 531 TVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWS 610 (741)
T ss_dssp SCSSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred cccccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEC
Confidence 21 2333 57888999999999999999999988888777777777789999999999999888889999999999
Q ss_pred hHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCc
Q 004735 583 AGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKV 661 (732)
Q Consensus 583 ~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~ 661 (732)
+||++++.++. +|++++++|+.+|+.++..+.. .+...++.....+.+.|...+|+..+.++++|+|++||++|.+
T Consensus 611 ~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~ 687 (741)
T 2ecf_A 611 NGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDS---HYTERYMDLPARNDAGYREARVLTHIEGLRSPLLLIHGMADDN 687 (741)
T ss_dssp HHHHHHHHHHHHCTTTCSEEEEESCCCCGGGSBH---HHHHHHHCCTGGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSS
T ss_pred hHHHHHHHHHHhCCCceEEEEEcCCCcchhhhcc---ccchhhcCCcccChhhhhhcCHHHHHhhCCCCEEEEccCCCCC
Confidence 99999999988 8999999999999988653211 1112222222223466778899999999999999999999999
Q ss_pred cChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 662 VPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 662 v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+++++++++++.++..+++++++++++++|.+..... .++++.+++||+++|+
T Consensus 688 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 688 VLFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADA-LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp SCTHHHHHHHHHHHHTTCCCEEEEETTCCSSCCHHHH-HHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCceEEEEECCCCCCCCCCch-hHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998764333 7888999999999986
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-50 Score=464.05 Aligned_cols=572 Identities=13% Similarity=0.137 Sum_probs=412.3
Q ss_pred cCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEE--ECCEEEEEeCCCC---
Q 004735 91 LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI--FGDTVIFSNYKDQ--- 165 (732)
Q Consensus 91 ~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~--~~~~i~f~~~~~~--- 165 (732)
...|... |+.+||+..... ..+..++|.... +..+.+++. +..+.-+.+....+.+ ++..|+|+....+
T Consensus 81 ~~~p~~~-g~~~y~~~~~~~-~~~~~~~r~~~~--~~~~vllD~--n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~ 154 (693)
T 3iuj_A 81 EGAPFRE-GRYHYFFKNDGL-QNQNVLWRQQEG--KPAEVFLDP--NTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDW 154 (693)
T ss_dssp ECCCEEE-TTEEEEEEECSS-CSSCEEEEECTT--SCCEEEECG--GGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred CCCCEEE-CCEEEEEEEcCC-CceeEEEEeCCC--CCcEEEEeh--hhccCCCcEEEEEEEECCCCCEEEEEEecCCCce
Confidence 3444434 888998876442 344477776443 233434332 1111111122233344 4558888765443
Q ss_pred -eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCC----CCCCceeEEEEEEcCCCCccccEEcc
Q 004735 166 -RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ----DALNSTTEIVAIALNGQNIQEPKVLV 240 (732)
Q Consensus 166 -~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~----~~~~~~~~l~~~d~~~~~~~~~~~lt 240 (732)
.|+++|+++ ++..+.+.. ......++|| ||+.|+|++.+... .......+||++++.++..+ .+.+.
T Consensus 155 ~~i~v~dl~t--g~~~~~~~~----~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-~~~v~ 226 (693)
T 3iuj_A 155 REIHLMDVES--KQPLETPLK----DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED-DRLVF 226 (693)
T ss_dssp EEEEEEETTT--CSEEEEEEE----EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG-CEEEE
T ss_pred EEEEEEECCC--CCCCccccC----CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc-ceEEE
Confidence 799999998 766555432 2335778999 99999999876430 00122478999999876411 24454
Q ss_pred cCCC----ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EE
Q 004735 241 SGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 315 (732)
Q Consensus 241 ~~~~----~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~ 315 (732)
...+ +...+.|||||++|++.+.... ..++||++|++ +++.....+....+ ....+ |++||+ ++
T Consensus 227 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~~i~~~d~~-~~~~~~~~l~~~~~-----~~~~~-~~~~g~~l~ 295 (693)
T 3iuj_A 227 GAIPAQHHRYVGATVTEDDRFLLISAANST----SGNRLYVKDLS-QENAPLLTVQGDLD-----ADVSL-VDNKGSTLY 295 (693)
T ss_dssp SCSGGGCCSEEEEEECTTSCEEEEEEESSS----SCCEEEEEETT-STTCCCEEEECSSS-----SCEEE-EEEETTEEE
T ss_pred ecCCCCCeEEEEEEEcCCCCEEEEEEccCC----CCcEEEEEECC-CCCCceEEEeCCCC-----ceEEE-EeccCCEEE
Confidence 4433 4567899999999998874432 24689999997 55321133333322 22233 788888 99
Q ss_pred EEEeccCCeeeEEEEeccCCeE---EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 316 FVTDRKNGFWNLHKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~---~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
|.++......+|+++++++++. +.++++..... .|++ +++.|++...+++..+|++++++++.
T Consensus 296 ~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~------------~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 296 LLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS------------GSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE------------ETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE------------ECCEEEEEEEECCeeEEEEEECCCCe
Confidence 9888734467899999988764 66765543221 4443 78899999999999999999999888
Q ss_pred eEEeccCC-CceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCccCCCCCCCcEEEEeecc
Q 004735 393 LSLLDIPF-TDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTE 469 (732)
Q Consensus 393 ~~~lt~~~-~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 469 (732)
.+.|+.+. ..+..+ ..+++.+++..++..+|..+|.+|+++++.+.|+ ... ..+++..+ ..+++.+++.
T Consensus 362 ~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~------~~~-~~~~~~~~-~~~~~~~~~~ 433 (693)
T 3iuj_A 362 VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR------ASA-APFKPEDY-VSEQRFYQSK 433 (693)
T ss_dssp EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE------CCC-SSCCGGGE-EEEEEEEECT
T ss_pred eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE------eCC-CCcChhhC-eeEEEEEecC
Confidence 88887654 344444 3356788888999999999999999998865444 221 23444433 5788999998
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC
Q 004735 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549 (732)
Q Consensus 470 ~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~ 549 (732)
+|.+++++++.|++.. ..++.|+||++||+++......+....+.|+++||+|+++|+||++++|..|.......
T Consensus 434 -dg~~i~~~l~~p~~~~----~~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 508 (693)
T 3iuj_A 434 -DGTRVPLIISYRKGLK----LDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQ 508 (693)
T ss_dssp -TSCEEEEEEEEESSCC----CSSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGG
T ss_pred -CCcEEEEEEEecCCCC----CCCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhh
Confidence 9999999999998632 25678999999999888777888888889999999999999999999999999887777
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhh
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 628 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (732)
++...++|+.+++++|++++.+|++||+|+|+|+||++++.++. +|++|+++|+.+|+.|+..+...... ..+ ...
T Consensus 509 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~--~~~-~~~ 585 (693)
T 3iuj_A 509 NKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAG--TGW-AYD 585 (693)
T ss_dssp GTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGG--GGC-HHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhccCCCc--hhH-HHH
Confidence 77777999999999999999899999999999999999999998 89999999999999997654321111 011 111
Q ss_pred cC---Ch----hhhhhcCccccCCC-CCCC-EEEEEeCCCCccChHHHHHHHHHHHhC---CCCEEEEEeCCCCccCCCc
Q 004735 629 VG---SE----KDYYEKSPINFVDK-FSCP-IILFQGLEDKVVPPDQARKIYKALKEN---GLPVALVEYEGEQHGFRKA 696 (732)
Q Consensus 629 ~~---~~----~~~~~~sp~~~~~~-i~~P-~Lii~G~~D~~v~~~~~~~~~~~l~~~---g~~~~~~~~~~~gH~~~~~ 696 (732)
++ ++ +.+...+|+.++.+ +++| +||+||++|.+|++.++.+++++|++. |+++++++++++||++..+
T Consensus 586 ~g~p~~~~~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~ 665 (693)
T 3iuj_A 586 YGTSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTP 665 (693)
T ss_dssp HCCTTSCHHHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHCCSSSCEEEEEEC-------CH
T ss_pred cCCccCHHHHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCccc
Confidence 12 22 24567899999999 8987 999999999999999999999999987 4799999999999998764
Q ss_pred -ccHHHHHHHHHHHHHHHhCCC
Q 004735 697 -ENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 697 -~~~~~~~~~~~~fl~~~l~~~ 717 (732)
+...+....+++||.++|+..
T Consensus 666 ~~~~~~~~~~~~~fl~~~l~~~ 687 (693)
T 3iuj_A 666 VAKLIEQSADIYAFTLYEMGYR 687 (693)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 566788889999999999843
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=460.98 Aligned_cols=578 Identities=15% Similarity=0.153 Sum_probs=417.1
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccccc--ccCCceeEEECCEEEEEeCCCC-
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQ--EYGGGAFRIFGDTVIFSNYKDQ- 165 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~--~~g~~~~~~~~~~i~f~~~~~~- 165 (732)
....|. | |+++||+....+ ..+..||+.+..+| +.+.+++.. ..+.-+ ..+...|++++..|+|.....+
T Consensus 75 ~~~~p~--~dG~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~lld~~--~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~ 148 (710)
T 2xdw_A 75 KYSCHF--KKGKRYFYFYNTGL-QNQRVLYVQDSLEG-EARVFLDPN--ILSDDGTVALRGYAFSEDGEYFAYGLSASGS 148 (710)
T ss_dssp EECCCE--EETTEEEEEEECSS-CSSCEEEEESSTTS-CCEEEECGG--GGCTTSCEEEEEEEECTTSSEEEEEEEETTC
T ss_pred cCCCCE--EECCEEEEEEEcCC-ceEEEEEEEcCCCC-CcEEEECHH--HhccCCCEEEEEEEECCCCCEEEEEEcCCCC
Confidence 345555 6 999999987542 33447888876533 454444321 100001 1122334444558888865443
Q ss_pred ---eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCC-------CCCceeEEEEEEcCCCCccc
Q 004735 166 ---RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------ALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 166 ---~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~-------~~~~~~~l~~~d~~~~~~~~ 235 (732)
.||++|+++ ++..+++.. ...+..++|||||+.|+|++.+.... ......+||++++.+++..
T Consensus 149 ~~~~i~v~d~~t--g~~~~~~~~----~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~- 221 (710)
T 2xdw_A 149 DWVTIKFMKVDG--AKELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE- 221 (710)
T ss_dssp SCEEEEEEETTT--TEEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-
T ss_pred ceEEEEEEECCC--CCCCccccc----CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc-
Confidence 899999998 776665433 23346789999999999988654310 0122468999999887511
Q ss_pred cEEcccC---CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC------CceeeeEEecCCCCCccccCcCc
Q 004735 236 PKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN------GDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 236 ~~~lt~~---~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~------g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
.+.+..+ ..+...+.|||||++|++.+.+... ...+||++|++ + |+. ..+.+.... .. ...
T Consensus 222 ~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~~~l~~~d~~-~~~~~~~~~~-~~~~l~~~~----~~-~~~ 291 (710)
T 2xdw_A 222 DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD---PVNRLWYCDLQ-QESNGITGIL-KWVKLIDNF----EG-EYD 291 (710)
T ss_dssp CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS---SCCEEEEEEGG-GSSSSSCSSC-CCEEEECSS----SS-CEE
T ss_pred ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC---CccEEEEEECc-ccccccCCcc-ceEEeeCCC----Cc-EEE
Confidence 1233232 3345689999999999998753321 15689999998 5 421 123333322 11 234
Q ss_pred eeCCCCc-EEEEEeccCCeeeEEEEeccCCe---EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEE
Q 004735 307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (732)
Q Consensus 307 ~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~---~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ 382 (732)
.|++||+ |+|.++......+|+++|+++++ .+.|+++... .. ...+.+. +++.++++..+++..+
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~----~~---~~~~~~~----~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK----DV---LEWVACV----RSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS----CE---EEEEEEE----TTTEEEEEEEETTEEE
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC----Ce---EEEEEEE----cCCEEEEEEEECCEEE
Confidence 6999999 89888773447789999998874 3666644211 00 1123343 5788999999999999
Q ss_pred EEEEECCCCc-eEEeccCCCceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCc--ceeeeeEEEecCCCCCccCCCC
Q 004735 383 LGILDDFGHS-LSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK--LKAVDFKVVWSSSPDTLKYKSY 457 (732)
Q Consensus 383 ly~~~~~~~~-~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~--~~~lt~~~~~~~~~~~~~~~~~ 457 (732)
|+++++.+|+ .+.|+.+...+..+ +.+++.+++..++...|..+|++|+.+++ .+.|.+ .....++...
T Consensus 361 l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~------~~~~~~~~~~ 434 (710)
T 2xdw_A 361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFRE------VTVKGIDASD 434 (710)
T ss_dssp EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEE------CCCTTCCGGG
T ss_pred EEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeee------cccCCcCccc
Confidence 9999995554 67888776666666 33566889999999999999999999887 544432 1112233333
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHH-CCCEEEEEcCCCCC
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGST 536 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~~ 536 (732)
+ .++++.+.+. +|.+++++++.|++.. ..++.|+||++||+++....+.|......|++ +||+|+++|+||++
T Consensus 435 ~-~~~~~~~~~~-dg~~i~~~~~~p~~~~----~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g 508 (710)
T 2xdw_A 435 Y-QTVQIFYPSK-DGTKIPMFIVHKKGIK----LDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGG 508 (710)
T ss_dssp E-EEEEEEEECT-TSCEEEEEEEEETTCC----CSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSS
T ss_pred c-EEEEEEEEcC-CCCEEEEEEEecCCCC----CCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCC
Confidence 3 5688999998 9999999999998632 24678999999999887777777776777888 99999999999999
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA 615 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~ 615 (732)
++|..|.......++...++|+.+++++|++++.+|++||+|+|+|+||++++.++. +|++|+++|+.+|+.++..+..
T Consensus 509 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~ 588 (710)
T 2xdw_A 509 EYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHK 588 (710)
T ss_dssp TTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGG
T ss_pred CCChHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccc
Confidence 999999887766666677899999999999998899999999999999999999998 8999999999999998765433
Q ss_pred hcchhhhhhhhhhcCC---h---hhhhhcCccccCC-----CCCC-CEEEEEeCCCCccChHHHHHHHHHHHhC------
Q 004735 616 ETHKFESRYIDNLVGS---E---KDYYEKSPINFVD-----KFSC-PIILFQGLEDKVVPPDQARKIYKALKEN------ 677 (732)
Q Consensus 616 ~~~~~~~~~~~~~~~~---~---~~~~~~sp~~~~~-----~i~~-P~Lii~G~~D~~v~~~~~~~~~~~l~~~------ 677 (732)
.... ..+... +++ + +.+...+|+.++. ++++ |+||+||++|.+|++.++.+++++|++.
T Consensus 589 ~~~~--~~~~~~-~g~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 665 (710)
T 2xdw_A 589 YTIG--HAWTTD-YGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRK 665 (710)
T ss_dssp STTG--GGGHHH-HCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTT
T ss_pred cCCC--hhHHHh-CCCCCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccC
Confidence 2111 111111 121 2 3456789999998 7886 9999999999999999999999999987
Q ss_pred -CCCEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHHHhCC
Q 004735 678 -GLPVALVEYEGEQHGFRKA-ENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 678 -g~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~fl~~~l~~ 716 (732)
|.++++++++++||++..+ ....+.+..+++||.++|+.
T Consensus 666 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 706 (710)
T 2xdw_A 666 QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 706 (710)
T ss_dssp CCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999999998664 34568889999999999973
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=463.22 Aligned_cols=573 Identities=14% Similarity=0.087 Sum_probs=409.7
Q ss_pred cCceEEcCCCcEEEEeecCCCCCceEEEEcCCC--CCCC-CcccCCCCCccccccccc-CCceeEEE---CCEEEEEeCC
Q 004735 91 LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAK--AGDE-PSDITPKEYAVRTTAQEY-GGGAFRIF---GDTVIFSNYK 163 (732)
Q Consensus 91 ~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~--~g~~-~~~l~~~~~~~~~~~~~~-g~~~~~~~---~~~i~f~~~~ 163 (732)
.+.|... |+++||+...++ +.+..+++.+.. .|+. ..+++.++ +..+..+++ ..+.+.++ +..|+|+...
T Consensus 119 ~~~p~~~-g~~~yy~~~~~g-~~~~vl~r~~~~~~~~~~~~~~vlld~-n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~ 195 (751)
T 2xe4_A 119 MSAPYVY-GKYRYYTREVKG-KPYKIYCRVFTDKEPGDVAAEEVIIDV-NQVAEGKAFCDVMEVKPAPPEHDLVAFSVDM 195 (751)
T ss_dssp ECCCEEE-TTEEEEEEECTT-CCSCEEEEEETTSCTTCTTTCEEEEEH-HHHTTTCSCCEEEEEEECTTTTCEEEEEEES
T ss_pred CCCCeEE-CCEEEEEEECCC-CceeEEEEEcCCCCCCCCcCCEEEech-hHhccCCCeEEEeeeEecCCCCCEEEEEEeC
Confidence 4556545 999999976443 224466666541 2220 32333222 333333343 34445555 4589998765
Q ss_pred CC----eEEEEeCCCCCC-CceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE
Q 004735 164 DQ----RLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV 238 (732)
Q Consensus 164 ~~----~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 238 (732)
.+ +||++|+++ + + .++..- ......+.|||||+.|+|++.+.... ..+||++++.++... .+.
T Consensus 196 ~G~~~~~l~v~dl~~--g~~--~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~----~~~v~~~~lgt~~~~-~~l 263 (751)
T 2xe4_A 196 SGNEVYTIEFKRISD--PSQ--TIADKV---SGTNGEIVWGPDHTSLFYVTKDETLR----ENKVWRHVMGKLQSE-DVC 263 (751)
T ss_dssp SSSSCEEEEEEETTC--TTC--CCCCCE---EEECSCCEECSSTTEEEEEEECTTCC----EEEEEEEETTSCGGG-CEE
T ss_pred CCCceEEEEEEECCC--CCE--eCCccc---cCceeeEEEecCCCEEEEEEECCCCC----CCEEEEEECCCCchh-cEE
Confidence 43 599999997 6 4 222210 12246789999999999997654222 369999999886411 123
Q ss_pred cc--cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceee-eEEecCCCCCccccCcCceeCCC---C
Q 004735 239 LV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKWSSK---G 312 (732)
Q Consensus 239 lt--~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~-~~~~~~~~~~~~~~~~~~~wspD---g 312 (732)
+. ....+...+.|||||++|+|.++.. ..++||++|++ +++... ++.+.... ..+.|++| |
T Consensus 264 v~~~~~~~~~~~~~~SpDg~~l~~~~~~~-----~~~~l~~~d~~-~~~~~~~~~~l~~~~-------~~~~~s~~~~~g 330 (751)
T 2xe4_A 264 LYEEHNPLFSAFMYKAADTNTLCIGSQSP-----ETAEVHLLDLR-KGNAHNTLEIVRPRE-------KGVRYDVQMHGT 330 (751)
T ss_dssp EEECCCTTCEEEEEECTTSSEEEEEEECS-----SCEEEEEEESS-SCTTCCCEEESSCCC-------TTCCEEEEEETT
T ss_pred EEecCCCceEEEEEECCCCCEEEEEecCC-----CCceEEEEECC-CCCCCceeEEeecCC-------CCceEEEeeeeC
Confidence 32 2335667899999999999998544 36789999998 542111 13333321 24456665 7
Q ss_pred c-EEEEEecc-CCeeeEEEEeccC-CeEEE-ecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 313 E-LFFVTDRK-NGFWNLHKWIESN-NEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 313 ~-l~~~~~~~-~g~~~l~~~d~~~-g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
+ |+|.++.. .++.+|+++++++ ++.+. |+++..+..-. .+.+ .++.|++...+++..+|+++++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~-------~~~~-----~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFME-------SIAV-----RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEE-------EEEE-----CSSEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEE-------EEEE-----ECCEEEEEEEeCCEEEEEEEec
Confidence 7 99999883 4778999999876 45555 55443221111 1222 5678999999999999999996
Q ss_pred -------CCCc-eEEeccCCC-ceEEe------eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCcc
Q 004735 389 -------FGHS-LSLLDIPFT-DIDNI------TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLK 453 (732)
Q Consensus 389 -------~~~~-~~~lt~~~~-~v~~~------~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~ 453 (732)
++++ .+.|+.+.. .+..+ ..+++.+++..++...|.++|.+|+.+++.+.|++..+ ...+
T Consensus 399 ~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~-----~~~~ 473 (751)
T 2xe4_A 399 DSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREV-----GGGF 473 (751)
T ss_dssp CTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCC-----CTTC
T ss_pred ccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEecccc-----ccCC
Confidence 6777 788865433 23344 22556799999999999999999999888765553111 1134
Q ss_pred CCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCC
Q 004735 454 YKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYG 533 (732)
Q Consensus 454 ~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r 533 (732)
++..+ .++.+++++. +|.+++++++.|++.. ++++.|+||++||+++......|....+.|+++||+|+++|+|
T Consensus 474 ~~~~~-~~~~~~~~s~-dG~~i~~~l~~p~~~~----~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~R 547 (751)
T 2xe4_A 474 DAANY-KVERRFATAP-DQTKIPLSVVYHKDLD----MSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDRGMIFAIAHIR 547 (751)
T ss_dssp CGGGE-EEEEEEEECT-TCCEEEEEEEEETTSC----TTSCCCEEEECCCCTTCCCCCCCCGGGHHHHTTTCEEEEECCT
T ss_pred Cccce-EEEEEEEECC-CCcEEEEEEEcCCCCC----CCCCccEEEEECCCCCcCCCCcchHHHHHHHhCCcEEEEEeeC
Confidence 44434 4788999998 9999999999997632 2467899999999987776666777778899999999999999
Q ss_pred CCCCCChhhHH-hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH
Q 004735 534 GSTGYGREFRE-RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 611 (732)
Q Consensus 534 G~~g~g~~~~~-~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~ 611 (732)
|++++|..|.. .....++...++|+.+++++|++++.+|++||+|+|+|+||+++++++. +|++|+++|+.+|+.|+.
T Consensus 548 G~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~d~~ 627 (751)
T 2xe4_A 548 GGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVM 627 (751)
T ss_dssp TSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCHH
T ss_pred CCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcchHH
Confidence 99999999988 7766677778999999999999998899999999999999999999998 899999999999999987
Q ss_pred HHHhh-cchh-hhhhhhhhcC---Ch---hhhhhcCccccCCCCCCC-EEEEEeCCCCccChHHHHHHHHHHHhCC---C
Q 004735 612 MLRAE-THKF-ESRYIDNLVG---SE---KDYYEKSPINFVDKFSCP-IILFQGLEDKVVPPDQARKIYKALKENG---L 679 (732)
Q Consensus 612 ~~~~~-~~~~-~~~~~~~~~~---~~---~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~v~~~~~~~~~~~l~~~g---~ 679 (732)
.+... ...+ ...+ ..++ ++ +.+...+|+.++.++++| +||+||++|.+|++.++.+++++|++.+ .
T Consensus 628 ~~~~~~~~~~~~~~~--~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~~~~~~~ 705 (751)
T 2xe4_A 628 TTMCDPSIPLTTGEW--EEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKTDNN 705 (751)
T ss_dssp HHHTCTTSTTHHHHT--TTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSCTHHHHHHHHHHHHHCCSCC
T ss_pred hhhcccCcccchhhH--HHcCCCCCHHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCCHHHHHHHHHHHHhcCCCCc
Confidence 65321 1111 1111 1122 22 245678999999999997 9999999999999999999999999884 4
Q ss_pred CEEEEEeCCCCccCCCcc-cHHHHHHHHHHHHHHHhCC
Q 004735 680 PVALVEYEGEQHGFRKAE-NIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 680 ~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~fl~~~l~~ 716 (732)
.+.+++++++||++..+. ...+....+++||.++|+.
T Consensus 706 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~~ 743 (751)
T 2xe4_A 706 EILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKS 743 (751)
T ss_dssp CEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhCC
Confidence 567777899999986533 4456677899999999984
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-49 Score=454.12 Aligned_cols=584 Identities=16% Similarity=0.138 Sum_probs=412.4
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccc--cCCceeEEECCEEEEEeCCC---
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQE--YGGGAFRIFGDTVIFSNYKD--- 164 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~--~g~~~~~~~~~~i~f~~~~~--- 164 (732)
....|... |+++||+....+ ..+..||+.+..+| +.+.++... ....-+. .+...|++++..|+|.....
T Consensus 71 ~~~~p~~d-G~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~l~d~~--~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~ 145 (695)
T 2bkl_A 71 SVSTPSRR-NGRFFYVRTHKD-KEKAILYWRQGESG-QEKVLLDPN--GWSKDGTVSLGTWAVSWDGKKVAFAQKPNAAD 145 (695)
T ss_dssp EECCCEEE-TTEEEEEEECTT-CSSCEEEEEESTTS-CCEEEECGG--GSSSSSCEEEEEEEECTTSSEEEEEEEETTCS
T ss_pred cCCCCEEE-CCEEEEEEEcCC-CeEEEEEEEcCCCC-CcEEEEchH--HhccCCCEEEEEEEECCCCCEEEEEECCCCCc
Confidence 34455533 999999987553 33567888765533 556665422 1100111 12233444556888886543
Q ss_pred -CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCC----CCCceeEEEEEEcCCCCccccEEc
Q 004735 165 -QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD----ALNSTTEIVAIALNGQNIQEPKVL 239 (732)
Q Consensus 165 -~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~----~~~~~~~l~~~d~~~~~~~~~~~l 239 (732)
..|+++|+++ ++..+..... ...+..++|||||+.|+|++.+.... ......+||++++.++... .+.+
T Consensus 146 ~~~i~v~dl~t--g~~~~~~~~~---~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-~~lv 219 (695)
T 2bkl_A 146 EAVLHVIDVDS--GEWSKVDVIE---GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-DTVV 219 (695)
T ss_dssp CCEEEEEETTT--CCBCSSCCBS---CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-CEEE
T ss_pred eEEEEEEECCC--CCCcCCcccC---cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-ceEE
Confidence 3799999998 6554111110 12236789999999999988754310 0012478999999887511 1233
Q ss_pred ccC---CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEE
Q 004735 240 VSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 316 (732)
Q Consensus 240 t~~---~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~ 316 (732)
... ..+...+.|||||++|++.+.+.. ...+||+++.. +|+.+ .+.... .....+.| +||++++
T Consensus 220 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~----~~~~l~~~~~~-~~~~~--~l~~~~-----~~~~~~~~-~~g~l~~ 286 (695)
T 2bkl_A 220 HERTGDPTTFLQSDLSRDGKYLFVYILRGW----SENDVYWKRPG-EKDFR--LLVKGV-----GAKYEVHA-WKDRFYV 286 (695)
T ss_dssp ECCCCCTTCEEEEEECTTSCCEEEEEEETT----TEEEEEEECTT-CSSCE--EEEECS-----SCCEEEEE-ETTEEEE
T ss_pred EecCCCCEEEEEEEECCCCCEEEEEEeCCC----CceEEEEEcCC-CCceE--EeecCC-----CceEEEEe-cCCcEEE
Confidence 332 245678999999999999885542 25689999765 56553 333332 23345667 6777777
Q ss_pred EEeccCCeeeEEEEeccCCeE---EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 317 VTDRKNGFWNLHKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 317 ~~~~~~g~~~l~~~d~~~g~~---~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
.++...+..+|+++|+++++. +.|+.+.. .+. ...+.+ .++.++++..+++..+|++++++++..
T Consensus 287 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~--l~~~~~-----~~~~lv~~~~~dg~~~l~~~~~~g~~~ 354 (695)
T 2bkl_A 287 LTDEGAPRQRVFEVDPAKPARASWKEIVPEDS-----SAS--LLSVSI-----VGGHLSLEYLKDATSEVRVATLKGKPV 354 (695)
T ss_dssp EECTTCTTCEEEEEBTTBCSGGGCEEEECCCS-----SCE--EEEEEE-----ETTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred EECCCCCCCEEEEEeCCCCCccCCeEEecCCC-----CCe--EEEEEE-----ECCEEEEEEEECCEEEEEEEeCCCCee
Confidence 776534578899999988763 66654321 111 112333 356788899999999999999887777
Q ss_pred EEeccC-CCceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCccCCCCCCCcEEEEeeccC
Q 004735 394 SLLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEV 470 (732)
Q Consensus 394 ~~lt~~-~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 470 (732)
+.++.+ ...+..+ +.+++.+++..++...|..+|++|+++++.+.|++ .. ..++... ..++.+.+.+.
T Consensus 355 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~------~~-~~~~~~~-~~~~~~~~~~~- 425 (695)
T 2bkl_A 355 RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAK------VD-VPMNPEQ-YQVEQVFYASK- 425 (695)
T ss_dssp EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEE------CC-CSSCGGG-EEEEEEEEECT-
T ss_pred EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec------CC-CCCCHHH-CeEEEEEEECC-
Confidence 777765 4444444 34567899999999999999999999988655542 11 1233333 36788999987
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.+++++++.|++.. ..++.|+||++||+++......|....+.|+++||+|+++|+||++++|..|.......+
T Consensus 426 dg~~i~~~~~~p~~~~----~~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~ 501 (695)
T 2bkl_A 426 DGTKVPMFVVHRKDLK----RDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDK 501 (695)
T ss_dssp TSCEEEEEEEEETTCC----CSSCCCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGG
T ss_pred CCCEEEEEEEECCCCC----CCCCccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhc
Confidence 9999999999998632 256789999999998777666777767788999999999999999999999988776666
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhc
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV 629 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~ 629 (732)
+...++|+.+++++|++++.+|++||+|+|+|+||++++.++. +|++|+++|+.+|+.++..+..... ...+.. .+
T Consensus 502 ~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~--~~~~~~-~~ 578 (695)
T 2bkl_A 502 KQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGS--GRTWIP-EY 578 (695)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTT--GGGGHH-HH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCC--CcchHH-Hh
Confidence 6677899999999999998899999999999999999999998 8999999999999998765432110 111111 11
Q ss_pred C---Ch---hhhhhcCccccCCCCC--CCEEEEEeCCCCccChHHHHHHHHHHHh---CCCCEEEEEeCCCCccCCCc-c
Q 004735 630 G---SE---KDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQARKIYKALKE---NGLPVALVEYEGEQHGFRKA-E 697 (732)
Q Consensus 630 ~---~~---~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~~~~~~~~l~~---~g~~~~~~~~~~~gH~~~~~-~ 697 (732)
+ ++ +.+...+|+.++.+++ +|+||+||++|.+|++.++.+++++|++ .|.++++++++++||++..+ +
T Consensus 579 g~~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~ 658 (695)
T 2bkl_A 579 GTAEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVA 658 (695)
T ss_dssp CCTTSHHHHHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCSCHH
T ss_pred CCCCCHHHHHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCCCHH
Confidence 2 22 3456789999998876 6999999999999999999999999998 67899999999999998543 4
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCCCc
Q 004735 698 NIKFTLEQQMVFFARVVGHFDVADEIIP 725 (732)
Q Consensus 698 ~~~~~~~~~~~fl~~~l~~~~~~~~~~~ 725 (732)
...+.+..+++||.++|+..+.+..++.
T Consensus 659 ~~~~~~~~~~~fl~~~l~~~~~~~~~~~ 686 (695)
T 2bkl_A 659 KAIESSVDLYSFLFQVLDVQGAQGGVAA 686 (695)
T ss_dssp HHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchhc
Confidence 5677888999999999986555544443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=463.94 Aligned_cols=587 Identities=14% Similarity=0.115 Sum_probs=412.5
Q ss_pred CCcCCHHHHhccC--CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEE
Q 004735 76 KSPLTADVVSGAS--KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI 152 (732)
Q Consensus 76 ~~~~~~~~i~~~~--~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~ 152 (732)
..++|+++++... .....+.|+| |+.+ +. . .+|. ++.++..+| +.+.++... .. ...+...+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~~-~~-~---~dg~--i~~~d~~~g-~~~~~~~~~-~~----~~~~v~~~~~ 68 (723)
T 1xfd_A 2 KKKVTVEDLFSEDFKIHDPEAKWISDTEFI-YR-E---QKGT--VRLWNVETN-TSTVLIEGK-KI----ESLRAIRYEI 68 (723)
T ss_dssp CCCCCHHHHTCTTTCCCCCCCCBSSSSCBC-CC-C---SSSC--EEEBCGGGC-CCEEEECTT-TT----TTTTCSEEEE
T ss_pred CccccHHHHhCCCCcccccccEEcCCCcEE-EE-e---CCCC--EEEEECCCC-cEEEEeccc-cc----cccccceEEE
Confidence 4568999998773 3357899999 7633 32 2 2354 555665544 444444322 10 0112344555
Q ss_pred E--CCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeE
Q 004735 153 F--GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (732)
Q Consensus 153 ~--~~~i~f~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 222 (732)
+ +..|++.... ++.||++|+++ ++.++|+..... ......++|||||++|+|+.. .+
T Consensus 69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~-~~~~~~~~~SPdG~~la~~~~----------~~ 135 (723)
T 1xfd_A 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPEVS-NAKLQYAGWGPKGQQLIFIFE----------NN 135 (723)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCCEECCCTTCC-SCCCSBCCBCSSTTCEEEEET----------TE
T ss_pred CCCCCEEEEEecCccceeecceeeEEEEECCC--CceEeccCCccc-cccccccEECCCCCEEEEEEC----------Ce
Confidence 4 4578887643 26899999998 777778754211 223467889999999999875 48
Q ss_pred EEEEEcCCCCccccEEcccCC-Cc------------------eeccccCCCCCeEEEEeccCCC----------------
Q 004735 223 IVAIALNGQNIQEPKVLVSGS-DF------------------YAFPRMDPRGERMAWIEWHHPN---------------- 267 (732)
Q Consensus 223 l~~~d~~~~~~~~~~~lt~~~-~~------------------~~~p~~SPDG~~la~~~~~~~~---------------- 267 (732)
||++++++++ .++++... .. ...+.|||||++|+|.+.+...
T Consensus 136 i~~~~~~~g~---~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 212 (723)
T 1xfd_A 136 IYYCAHVGKQ---AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT 212 (723)
T ss_dssp EEEESSSSSC---CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred EEEEECCCCc---eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCc
Confidence 9999999988 77777542 11 1468999999999999865321
Q ss_pred ----------CCCCccEEEEEEecCCCceeeeEEecCCCC--CccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccC
Q 004735 268 ----------MPWDKAELWVGYISENGDVYKRVCVAGFDP--TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 268 ----------~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~--~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~ 334 (732)
......+|+++|++ +++. ...+..... .....+..+.|||||+ +++..++..+...|+++|+++
T Consensus 213 ~~~~~~~~~G~~~~~~~l~~~d~~-~~~~--~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 213 VKPYHYPKAGSENPSISLHVIGLN-GPTH--DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp CEEEECCBTTSCCCEEEEEEEESS-SSCC--CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred ceeccCCCCCCCCCeeEEEEEECC-CCce--eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 11123479999998 6653 222332100 0004566799999999 655556535567899999999
Q ss_pred CeEEEecccc--ccc----CCCceeecccceeeeeecCCCCEEEEE-EEECC----EEEEEEEE-CCCCc---eEEeccC
Q 004735 335 NEVLAIYSLD--AEF----SRPLWVFGINSYEIIQSHGEKNLIACS-YRQNG----RSYLGILD-DFGHS---LSLLDIP 399 (732)
Q Consensus 335 g~~~~l~~~~--~~~----~~~~w~~~~~~~~~~~~~~~~~~l~~~-s~~~g----~~~ly~~~-~~~~~---~~~lt~~ 399 (732)
++.+.+.... ... ..+.|++ ||+.|++. +++++ ..+||+++ ..+++ .++|+.+
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~sp------------dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~ 357 (723)
T 1xfd_A 290 GVCTKKHEDESEAWLHRQNEEPVFSK------------DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG 357 (723)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECT------------TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS
T ss_pred CcceEEEEeccCCEEeccCCCceEcC------------CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC
Confidence 9877765321 111 2455665 88888887 67777 78999999 67777 7888877
Q ss_pred CCceEEe--eEeCCEEEEEEeCCC--CCcEEEEEEcCCC-cceeeee---------EEEecCCCC---------------
Q 004735 400 FTDIDNI--TLGNDCLFVEGASGV--EPSSVAKVTLDDH-KLKAVDF---------KVVWSSSPD--------------- 450 (732)
Q Consensus 400 ~~~v~~~--~~~~~~~~~~~~~~~--~~~~ly~~dl~~~-~~~~lt~---------~~~~~~~~~--------------- 450 (732)
.+.+... .+++++.+++.++.. ....||.+++.++ +.+.|+. ...++....
T Consensus 358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~ 437 (723)
T 1xfd_A 358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVT 437 (723)
T ss_dssp SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEE
T ss_pred CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEE
Confidence 6666542 344444455555544 4456999987664 3444431 122222110
Q ss_pred -------C-------------ccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc-
Q 004735 451 -------T-------------LKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA- 509 (732)
Q Consensus 451 -------~-------------~~~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~- 509 (732)
. .+.+..+.+++.+.+++. +| +++++++.|++.. +.++.|+||++||+++...
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~~~~~~P~~~~----~~~~~p~vv~~HG~~~~~~~ 511 (723)
T 1xfd_A 438 VHNTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEID-DY-NLPMQILKPATFT----DTTHYPLLLVVDGTPGSQSV 511 (723)
T ss_dssp EEETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEET-TE-EECCBEEBCSSCC----SSSCEEEEEECCCCTTCCCC
T ss_pred EEECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcC-Cc-eEEEEEEeCCCCC----CCCccCEEEEEcCCCCcccc
Confidence 0 001123445677788876 77 9999999998632 2567899999999977632
Q ss_pred --CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHH
Q 004735 510 --RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587 (732)
Q Consensus 510 --~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~ 587 (732)
.+.+....+.++++||+|+++|+||++++|..+.......++...++|+.++++++.+++.+|.+||+|+|||+||++
T Consensus 512 ~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~ 591 (723)
T 1xfd_A 512 AEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYL 591 (723)
T ss_dssp CCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHH
T ss_pred CccccccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHH
Confidence 223346667788899999999999999999888777777777778999999999999987788999999999999999
Q ss_pred HHHHHh-C----CCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCC-CCEEEEEeCCCCc
Q 004735 588 TLAALA-F----RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLEDKV 661 (732)
Q Consensus 588 a~~~~~-~----p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~ 661 (732)
++.++. + |++++++++.+|+.++..+. ..+...++.......+.|...++...+.+++ +|+|++||++|.+
T Consensus 592 a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~ 668 (723)
T 1xfd_A 592 STYILPAKGENQGQTFTCGSALSPITDFKLYA---SAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEK 668 (723)
T ss_dssp HHHCCCCSSSTTCCCCSEEEEESCCCCTTSSB---HHHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSS
T ss_pred HHHHHHhccccCCCeEEEEEEccCCcchHHhh---hhccHhhcCCccCChhHHHhcChhhHHhhcCCCCEEEEEeCCCCC
Confidence 999988 7 89999999999998865321 1111122222222345666777878889999 7999999999999
Q ss_pred cChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 662 VPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 662 v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+|++++++++++|++.+++++++++++++|.+...+.....++.+++||+++|+
T Consensus 669 v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 669 IHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 722 (723)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred cCHhHHHHHHHHHHHCCCCeEEEEECCCCcccccCcchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999986667788899999999998875
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=450.64 Aligned_cols=574 Identities=17% Similarity=0.178 Sum_probs=405.6
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCC--CCCCcccCCCCCccccccc--ccCCceeEEECCEEEEEeCCCC-
Q 004735 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKA--GDEPSDITPKEYAVRTTAQ--EYGGGAFRIFGDTVIFSNYKDQ- 165 (732)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~l~~~~~~~~~~~~--~~g~~~~~~~~~~i~f~~~~~~- 165 (732)
..|. | |+++||+....+ ..+..||+.+... |++.+.+++.. ..+.-+ ..+...|++++..|+|.....+
T Consensus 112 ~~p~--pdG~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~lld~~--~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~ 186 (741)
T 1yr2_A 112 GLPQ--RRGASVFYSWNSGL-MNQSQLLVRPADAPVGTKGRVLLDPN--TWAKDGATALDAWAASDDGRLLAYSVQDGGS 186 (741)
T ss_dssp CCCE--EETTEEEEEEECSS-CSSCEEEEEETTSCTTCCCEEEECGG--GCC----EEEEEEEECTTSSEEEEEEEETTC
T ss_pred CCCE--EECCEEEEEEEcCC-CeEEEEEEEcCCccCCCCCEEEECHH--HhccCCCEEEEeEEECCCCCEEEEEEcCCCC
Confidence 4444 6 999999987543 2356788876541 23555554321 101111 1122334444558888865433
Q ss_pred ---eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCC-----CCCceeEEEEEEcCCCCccccE
Q 004735 166 ---RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-----ALNSTTEIVAIALNGQNIQEPK 237 (732)
Q Consensus 166 ---~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~-----~~~~~~~l~~~d~~~~~~~~~~ 237 (732)
.||++|+++ ++....+.. ...+..++|||| +.|+|++.+.... ......+||++++.++... .+
T Consensus 187 e~~~i~v~dl~t--g~~~~~~~~----~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-~~ 258 (741)
T 1yr2_A 187 DWRTVKFVGVAD--GKPLADELK----WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-DQ 258 (741)
T ss_dssp SEEEEEEEETTT--CCEEEEEEE----EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG-CE
T ss_pred ceEEEEEEECCC--CCCCCccCC----CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh-CE
Confidence 699999998 766554322 233467899999 9999987654310 0112368999999876511 12
Q ss_pred EcccCC---CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCcee-eeEEecCCCCCccccCcCceeCCCCc
Q 004735 238 VLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 238 ~lt~~~---~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
.+.... .+...+.|||||++|++.+.+... ..++||++|++ ++... ...+.... .....+ |+|||+
T Consensus 259 lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~l~~~d~~-~~~~~~~~~l~~~~-----~~~~~~-~~~dg~ 328 (741)
T 1yr2_A 259 PVFATPELPKRGHGASVSSDGRWVVITSSEGTD---PVNTVHVARVT-NGKIGPVTALIPDL-----KAQWDF-VDGVGD 328 (741)
T ss_dssp EEECCTTCTTCEEEEEECTTSCEEEEEEECTTC---SCCEEEEEEEE-TTEECCCEEEECSS-----SSCEEE-EEEETT
T ss_pred EEeccCCCCeEEEEEEECCCCCEEEEEEEccCC---CcceEEEEECC-CCCCcccEEecCCC-----CceEEE-EeccCC
Confidence 333332 256789999999999998855432 35689999998 66221 13333333 222333 458999
Q ss_pred -EEEEEeccCCeeeEEEEeccCC--eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC
Q 004735 314 -LFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 390 (732)
Q Consensus 314 -l~~~~~~~~g~~~l~~~d~~~g--~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~ 390 (732)
|++.++......+|+++|++++ +.+.++++.... ...+.+ .++.++++..+++..+||++++++
T Consensus 329 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~--------l~~~~~-----~~~~lv~~~~~dg~~~l~~~~~~g 395 (741)
T 1yr2_A 329 QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN--------LESVGI-----AGNRLFASYIHDAKSQVLAFDLDG 395 (741)
T ss_dssp EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE--------EEEEEE-----EBTEEEEEEEETTEEEEEEEETTS
T ss_pred EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe--------EEEEEE-----ECCEEEEEEEECCEEEEEEEeCCC
Confidence 8888887344788999999884 567776542111 112233 456789999999999999999988
Q ss_pred CceEEeccC-CCceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCccCCCCCCCcEEEEee
Q 004735 391 HSLSLLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFP 467 (732)
Q Consensus 391 ~~~~~lt~~-~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~ 467 (732)
+..+.|+.+ ...+..+ +.+++.++|..++...|.+||++|+++++.+.|+ . ....++...+ ..+++.+.
T Consensus 396 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~------~-~~~~~~~~~~-~~~~~~~~ 467 (741)
T 1yr2_A 396 KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWE------P-VHLTFDPADF-RVEQVFYP 467 (741)
T ss_dssp CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECS------C-CCCSSCGGGE-EEEEEEEE
T ss_pred CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe------c-CCCCCChhHC-EEEEEEEE
Confidence 777888764 4445555 3456678899999999999999999998754443 2 1123343333 67889999
Q ss_pred ccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhc
Q 004735 468 TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 547 (732)
Q Consensus 468 ~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~ 547 (732)
+. +|.+++++++.|++. .++.|+||++||+++......|....+.|+++||+|+++|+||++++|..|.....
T Consensus 468 ~~-dg~~i~~~~~~p~~~------~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~ 540 (741)
T 1yr2_A 468 SK-DGTKVPMFIVRRKDA------KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGR 540 (741)
T ss_dssp CT-TSCEEEEEEEEETTC------CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred cC-CCCEEEEEEEecCCC------CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhh
Confidence 87 999999999999752 34679999999998777777787778889999999999999999999999988776
Q ss_pred cCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhh
Q 004735 548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYID 626 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 626 (732)
..++...++|+.+++++|++++.+|++||+|+|+|+||++++.++. +|++|+++|+.+|+.++..+..... ...+..
T Consensus 541 ~~~~~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~--~~~~~~ 618 (741)
T 1yr2_A 541 RDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTA--GRYWVD 618 (741)
T ss_dssp GGGTHHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTT--GGGGHH
T ss_pred hhcCCCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCC--CchhHH
Confidence 6666677999999999999998899999999999999999999998 9999999999999998765332111 011111
Q ss_pred hhcCC---h---hhhhhcCccccCCC-CCC-CEEEEEeCCCCccChHHHHHHHHHHHh---CCCCEEEEEeCCCCccCCC
Q 004735 627 NLVGS---E---KDYYEKSPINFVDK-FSC-PIILFQGLEDKVVPPDQARKIYKALKE---NGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 627 ~~~~~---~---~~~~~~sp~~~~~~-i~~-P~Lii~G~~D~~v~~~~~~~~~~~l~~---~g~~~~~~~~~~~gH~~~~ 695 (732)
.+++ + +.+...+|+.++.+ +++ |+||+||++|.+|++.++.+++++|++ .|.++++++++++||++..
T Consensus 619 -~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH~~~~ 697 (741)
T 1yr2_A 619 -DYGYPEKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGK 697 (741)
T ss_dssp -HHCCTTSHHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEEEEEC---------
T ss_pred -HcCCCCCHHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEEEEEeCCCCcCCCC
Confidence 1122 2 34567899999997 885 999999999999999999999999999 8889999999999999765
Q ss_pred c-ccHHHHHHHHHHHHHHHhCCCCC
Q 004735 696 A-ENIKFTLEQQMVFFARVVGHFDV 719 (732)
Q Consensus 696 ~-~~~~~~~~~~~~fl~~~l~~~~~ 719 (732)
+ ....+....+++||.++|+..+.
T Consensus 698 ~~~~~~~~~~~~~~fl~~~l~~~~~ 722 (741)
T 1yr2_A 698 PIDKQIEETADVQAFLAHFTGLTPR 722 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 3 34467889999999999985433
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=446.59 Aligned_cols=567 Identities=16% Similarity=0.155 Sum_probs=409.3
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~ 169 (732)
.+..++|+|.+.+.+... +. ++.++..+| +.+.++..... .....|+++++.|+|+. ++.||+
T Consensus 83 ~v~~~~~spd~~~~~~~~-----~~--i~~~d~~~~-~~~~l~~~~~~-------~~~~~~SpdG~~la~~~--~~~i~v 145 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQ-----GG--LVGFDMLAR-KVTYLFDTNEE-------TASLDFSPVGDRVAYVR--NHNLYI 145 (706)
T ss_dssp CCEEEEETTTTEEEEEET-----TE--EEEEETTTT-EEEEEECCTTC-------CTTCEECTTSSEEEEEE--TTEEEE
T ss_pred CceeEEECCCCeEEEEEC-----CE--EEEEECCCC-ceEEccCCccc-------ccCCcCCCCCCEEEEEE--CCeEEE
Confidence 467899998655555431 43 455555433 44444332101 11234555566888874 578999
Q ss_pred EeCCCC---CCCceecCCCCCCCCe------------EeeceeecCCCCEEEEEEeccCCC-------------------
Q 004735 170 HSIDSK---DSSPLPITPDYGEPLV------------SYADGIFDPRFNRYVTVREDRRQD------------------- 215 (732)
Q Consensus 170 ~d~~~~---~~~~~~lt~~~~~~~~------------~~~~~~~spdG~~l~~~~~~~~~~------------------- 215 (732)
+++++. .++.++++..... .. +...+.|||||++|++.+.+....
T Consensus 146 ~~~~~~~~~~g~~~~~~~~~~~-~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 224 (706)
T 2z3z_A 146 ARGGKLGEGMSRAIAVTIDGTE-TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLY 224 (706)
T ss_dssp EECBCTTSCCCCCEESCSCCBT-TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEEC
T ss_pred EecCcccccCCCcEEeccCCCC-CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEee
Confidence 999750 0245566654211 11 136788999999999887332110
Q ss_pred -----CCCceeEEEEEEcCCCCccccEEcccC---CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCC-ce
Q 004735 216 -----ALNSTTEIVAIALNGQNIQEPKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DV 286 (732)
Q Consensus 216 -----~~~~~~~l~~~d~~~~~~~~~~~lt~~---~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g-~~ 286 (732)
.......|+++|+++++ .+.+..+ ......+.|||||++|++.+.+... ....|+++|++ +| +.
T Consensus 225 y~~~g~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~---~~~~v~~~d~~-~g~~~ 297 (706)
T 2z3z_A 225 YPMAGTPSHHVTVGIYHLATGK---TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ---NECKVNAYDAE-TGRFV 297 (706)
T ss_dssp CCBTTSCCCEEEEEEEETTTTE---EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS---CEEEEEEEETT-TCCEE
T ss_pred CCCCCCCCCeeEEEEEECCCCc---eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC---CeeEEEEEECC-CCcee
Confidence 01124789999999988 6666532 2345678999999999998755433 35679999998 77 44
Q ss_pred eeeEEecCCCCCccccCcCceeCC--CCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCC-Cceeecccceeeee
Q 004735 287 YKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR-PLWVFGINSYEIIQ 363 (732)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~wsp--Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~-~~w~~~~~~~~~~~ 363 (732)
+.+ .......|......+.|+| ||++++.+.+ .+..+||.++.+++..+.|+.+...... +.|++
T Consensus 298 ~~~--~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~-~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp--------- 365 (706)
T 2z3z_A 298 RTL--FVETDKHYVEPLHPLTFLPGSNNQFIWQSRR-DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP--------- 365 (706)
T ss_dssp EEE--EEEECSSCCCCCSCCEECTTCSSEEEEEECT-TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT---------
T ss_pred eEE--EEccCCCeECccCCceeecCCCCEEEEEEcc-CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC---------
Confidence 222 2221112212245789999 9996677776 6788999999888888888765433332 34554
Q ss_pred ecCCCCEEEEEEEECC--EEEEEEEECCCCceEEeccCCCceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 364 SHGEKNLIACSYRQNG--RSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 364 ~~~~~~~l~~~s~~~g--~~~ly~~~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
+++.|++++..++ ..+||.+++++++.+.|+... .+..+ +.+++.+++..++...+.++|++|+++++.+.+
T Consensus 366 ---dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~~~~ 441 (706)
T 2z3z_A 366 ---KGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPES-GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLL 441 (706)
T ss_dssp ---TSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSS-SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEEEEE
T ss_pred ---CCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCC-ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeEeec
Confidence 7888988887655 579999999999888888543 34444 455667777778888899999999988873222
Q ss_pred eeEEEecCCCCCccCCCCCCCcEEEEeeccCCC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC-CcccH--
Q 004735 440 DFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNL-- 515 (732)
Q Consensus 440 t~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g-~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~-~~~~~-- 515 (732)
+ ..+ .+....+..++.+.+... +| ..++++++.|++.. ++++.|+||++||++..... ..|..
T Consensus 442 ~------~~~--~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~P~~~~----~~~~~p~iv~~HGg~~~~~~~~~~~~~~ 508 (706)
T 2z3z_A 442 E------AKN--PDTGYAMPEIRTGTIMAA-DGQTPLYYKLTMPLHFD----PAKKYPVIVYVYGGPHAQLVTKTWRSSV 508 (706)
T ss_dssp E------CC--------CCCCEEEEEEECT-TSSSEEEEEEECCTTCC----TTSCEEEEEECCCCTTCCCCCSCC----
T ss_pred c------ccc--hhhhcCCCCcEEEEEEcC-CCCEEEEEEEEeCCCCC----CCCCccEEEEecCCCCceeeccccccCc
Confidence 2 211 233445667888999987 88 89999999998632 24567999999998766532 23333
Q ss_pred --HHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 516 --SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 516 --~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
.++.|+++||.|+++|+||+++++..+.......++..+++|+.++++++.+++.+|.+|++|+|||+||++++.++.
T Consensus 509 ~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 588 (706)
T 2z3z_A 509 GGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLML 588 (706)
T ss_dssp CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHH
T ss_pred hHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHH
Confidence 578899999999999999999999888877777787778999999999999888888999999999999999999998
Q ss_pred -CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHH
Q 004735 594 -FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYK 672 (732)
Q Consensus 594 -~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (732)
+|++++++|+.+|+.++..+.. .+...++.....+++.|...+|...+.++++|+|++||++|.++|+++++++++
T Consensus 589 ~~p~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~ 665 (706)
T 2z3z_A 589 THGDVFKVGVAGGPVIDWNRYAI---MYGERYFDAPQENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLD 665 (706)
T ss_dssp HSTTTEEEEEEESCCCCGGGSBH---HHHHHHHCCTTTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSCTHHHHHHHH
T ss_pred hCCCcEEEEEEcCCccchHHHHh---hhhhhhcCCcccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCCHHHHHHHHH
Confidence 9999999999999988654211 112223322223457788889999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 673 ALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 673 ~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.|++.+++++++++++++|.+... ...+.++.+.+||+++|
T Consensus 666 ~l~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 666 ACVKARTYPDYYVYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp HHHHHTCCCEEEEETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCeEEEEeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 999989999999999999988654 77889999999999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=448.05 Aligned_cols=569 Identities=14% Similarity=0.124 Sum_probs=402.4
Q ss_pred cCceEEcC-CCcEEEEeecCCC---CCceEEEEcCCCCCCCC---cccCCCCCcccccccccCCceeEEECCEEEEEeCC
Q 004735 91 LGGTAVDG-HGRLIWLESRPTE---AGRGVLVKEPAKAGDEP---SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK 163 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~---~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~ 163 (732)
...++||| |+.+++...+... .....|+.++..+| +. +.+. . ......|++++..|+|..
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g-~~~~~~~l~-~---------~~~~~~~SPDG~~la~~~-- 128 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG-EFVRGNELP-R---------PIQYLCWSPVGSKLAYVY-- 128 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECCSSCCC-S---------SBCCEEECSSTTCEEEEE--
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC-ccccceecC-c---------ccccceECCCCCEEEEEE--
Confidence 56899999 9999887653210 01234666665543 32 2221 0 111235666677899985
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCe---------------EeeceeecCCCCEEEEEEeccCCCC------------
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLV---------------SYADGIFDPRFNRYVTVREDRRQDA------------ 216 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~---------------~~~~~~~spdG~~l~~~~~~~~~~~------------ 216 (732)
+++||++++.+ ++.++++........ ....++|||||++|+|.+.+.....
T Consensus 129 ~~~i~~~~~~~--g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~ 206 (719)
T 1z68_A 129 QNNIYLKQRPG--DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQY 206 (719)
T ss_dssp TTEEEEESSTT--SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSS
T ss_pred CCeEEEEeCCC--CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence 56899999988 788888754211000 1146899999999999876532100
Q ss_pred -------------CCceeEEEEEEcCCCCccccE---Ecc------cCCCceeccccCCCCCeEEEEeccCCCCCCCccE
Q 004735 217 -------------LNSTTEIVAIALNGQNIQEPK---VLV------SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (732)
Q Consensus 217 -------------~~~~~~l~~~d~~~~~~~~~~---~lt------~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~ 274 (732)
......|+++|+++++ .. ++. ........+.|||||+ +++...++.. ...+
T Consensus 207 ~~~~~~~yp~~g~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~---~~~~ 279 (719)
T 1z68_A 207 PRTINIPYPKAGAKNPVVRIFIIDTTYPA---YVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQ---NVSV 279 (719)
T ss_dssp CEEEEEECCBTTSCCCEEEEEEEESSCHH---HHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESST---TEEE
T ss_pred ccceeecCCCCCCCCCeeEEEEEECCCCC---ccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEecccc---CeEE
Confidence 0124589999999876 42 332 2344567899999975 6666433322 3567
Q ss_pred EEEEE----ecCCCceeeeEE--ecCCCCCccccCc-----CceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecc
Q 004735 275 LWVGY----ISENGDVYKRVC--VAGFDPTIVESPT-----EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS 342 (732)
Q Consensus 275 l~v~d----~~~~g~~~~~~~--~~~~~~~~~~~~~-----~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~ 342 (732)
|+++| ++ +|+...+.. ..+.. ..+. .+.|||||+ +++.+....|..+|+++++++++.+.|+.
T Consensus 280 l~~~d~~~~~~-~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~ 354 (719)
T 1z68_A 280 LSICDFREDWQ-TWDCPKTQEHIEESRT----GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITS 354 (719)
T ss_dssp EEEEEECSSSS-SEECCGGGEEEEECSS----SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSC
T ss_pred EEEEcccCCCC-CCceEEEEecccccCC----ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEeccc
Confidence 99999 76 665432221 02222 3333 789999999 77754433788899999999988888875
Q ss_pred cccccCCCceeecccceeeeeecCCCCEEEEEEEE----CCEEEEEEEECCCC--ceEEeccC----CCceEEe--eEeC
Q 004735 343 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ----NGRSYLGILDDFGH--SLSLLDIP----FTDIDNI--TLGN 410 (732)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~----~g~~~ly~~~~~~~--~~~~lt~~----~~~v~~~--~~~~ 410 (732)
+..++..+. +. +++.|++++.. .+..+||.++.+++ +.++|+.. ...+..+ +.++
T Consensus 355 ~~~~v~~~~---------~~----d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg 421 (719)
T 1z68_A 355 GKWEAINIF---------RV----TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYA 421 (719)
T ss_dssp SSSCEEEEE---------EE----CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGG
T ss_pred CceEEEEEE---------EE----eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCC
Confidence 433322222 22 57789988876 57789999998766 45777742 2233333 4556
Q ss_pred CEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCC--CccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCC
Q 004735 411 DCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD--TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQ 488 (732)
Q Consensus 411 ~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~ 488 (732)
+.+++.+++++.| .++++|+++++..+++ ..+.. ..+....+.+++.+++++. + .+++++++.|++..
T Consensus 422 ~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~P~~~~-- 491 (719)
T 1z68_A 422 KYYALVCYGPGIP-ISTLHDGRTDQEIKIL-----EENKELENALKNIQLPKEEIKKLEVD-E-ITLWYKMILPPQFD-- 491 (719)
T ss_dssp SSEEEEECCBSSC-EEEEECSSSCCEEEEE-----ECCHHHHHHTTSBCCCEEEEEEEEET-T-EEEEEEEEECTTCC--
T ss_pred CEEEEEcCCCCCC-eEEEEECCCCCEEEEe-----ecchhhhhhhccccCCceEEEEEecC-C-eEEEEEEEeCCCCC--
Confidence 6677777777666 6888998888753332 22211 1244456677889999986 5 99999999998632
Q ss_pred CCCCCCCCEEEEEcCCCCCcc-CCcc--cHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHH
Q 004735 489 ASPEEKPPLLVKSHGGPTSEA-RGIL--NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFL 565 (732)
Q Consensus 489 ~~~~~~~P~vl~~HGg~~~~~-~~~~--~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l 565 (732)
+.++.|+||++||+++... ...+ ......++++||.|+++|+||+++++..+.......++...++|+.++++++
T Consensus 492 --~~~~~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l 569 (719)
T 1z68_A 492 --RSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKF 569 (719)
T ss_dssp --SSSCEEEEEEECCCTTBCCCCCCCCCCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHH
T ss_pred --CCCCccEEEEECCCCCcCcccccchhhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHH
Confidence 2567899999999976543 2222 3333334578999999999999999998888777778877899999999999
Q ss_pred HhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhh--cCChhhhhhcCccc
Q 004735 566 VGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL--VGSEKDYYEKSPIN 642 (732)
Q Consensus 566 ~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~~ 642 (732)
.+++.+|.+|++|+|||+||++++.++. +|++|+++|+.+|+.++..+.. .+...++... ..+.+.|...+|+.
T Consensus 570 ~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~ 646 (719)
T 1z68_A 570 IEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYAS---VYTERFMGLPTKDDNLEHYKNSTVMA 646 (719)
T ss_dssp HTTSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBH---HHHHHHHCCSSTTTTHHHHHHTCSGG
T ss_pred HhcCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhcc---ccchhhcCCcccccchhhhhhCCHhH
Confidence 9988888999999999999999999998 8999999999999988654311 1111222111 12345677888888
Q ss_pred cCCCCCC-CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 643 FVDKFSC-PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 643 ~~~~i~~-P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.+.++++ |+|++||++|.+++++++.+++++|++.+++++++++++++|.+ ..+.....++.+.+||+++|+
T Consensus 647 ~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 647 RAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp GGGGGTTSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCCCcEEEEEeCCCCCcCHHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHHHHHHHHHHHHHHhhC
Confidence 8999998 89999999999999999999999999999999999999999988 556678899999999999874
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=374.58 Aligned_cols=582 Identities=12% Similarity=0.059 Sum_probs=391.2
Q ss_pred HhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCC----CC-CCCcccCCC-CCccc-ccccccCCce-eEEECC
Q 004735 84 VSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAK----AG-DEPSDITPK-EYAVR-TTAQEYGGGA-FRIFGD 155 (732)
Q Consensus 84 i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~----~g-~~~~~l~~~-~~~~~-~~~~~~g~~~-~~~~~~ 155 (732)
+.....++..|..- |+++|+..... ...+ .|||+... ++ .+.+.+++. .++.. ..-+...+.. +.++++
T Consensus 66 ~~~~~~ri~~p~~~-g~~~y~f~~d~-~~~~-gl~rrt~~~~~~~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~~~ 142 (711)
T 4hvt_A 66 IFYDQRKTPYGVIR-KGYVYNFWMDD-KNPQ-GLWRRTLVDNYSKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPN 142 (711)
T ss_dssp HHTCTTSCCCCEEE-TTEEEEEECCS-SCSS-CEEEEEEHHHHTSSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSSTT
T ss_pred HhccccccCCcEEE-CCEEEEEEecC-CCCc-EEEEEccchhcccCCCCcEEEeccccccccCCCcEEEeceeecCCCCC
Confidence 44444456666666 88888887644 3455 77875211 01 123333321 11111 1101222222 445566
Q ss_pred EEEEEeCCCC----eEEEEeCCCCCCCceecCCCCC--CC-----CeEeeceeecCCCCEEEEEEeccCC--CCCCceeE
Q 004735 156 TVIFSNYKDQ----RLYKHSIDSKDSSPLPITPDYG--EP-----LVSYADGIFDPRFNRYVTVREDRRQ--DALNSTTE 222 (732)
Q Consensus 156 ~i~f~~~~~~----~l~~~d~~~~~~~~~~lt~~~~--~~-----~~~~~~~~~spdG~~l~~~~~~~~~--~~~~~~~~ 222 (732)
++++.-...| .+..+|+.+ ++ .+..+-. .. ..++..++|- |++.+++.+...++ ........
T Consensus 143 ~~~~~ls~~G~d~~~~~~~d~~t--~~--~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~~~ 217 (711)
T 4hvt_A 143 RYLISMSFGGKDEMFFREWDLEK--KD--FVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYPNS 217 (711)
T ss_dssp EEEEEEEETTCSEEEEEEEETTT--TE--ECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSBCE
T ss_pred EEEEEeCCCCCceeEEEEEECCc--CC--cCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCCCE
Confidence 7666644333 688899987 32 2222100 00 0234455887 55665554432221 12233588
Q ss_pred EEEEEcCCCCccccEEcccC--CCceeccccCCCCCe---EEEEeccCCCCCCCccEEEEEEecC-CCceeeeEEecCCC
Q 004735 223 IVAIALNGQNIQEPKVLVSG--SDFYAFPRMDPRGER---MAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFD 296 (732)
Q Consensus 223 l~~~d~~~~~~~~~~~lt~~--~~~~~~p~~SPDG~~---la~~~~~~~~~~~~~~~l~v~d~~~-~g~~~~~~~~~~~~ 296 (732)
+|+..+.+...+ .+.+..+ .++..++..++|+++ ..+++.... +..+++|+.+++. +|++ .++....+
T Consensus 218 v~~~~~Gt~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~--~~l~~~~~ 291 (711)
T 4hvt_A 218 LYIWKRGESIEK-AKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKD---FYNYDNYILDTKYKNLKL--QKINMPSD 291 (711)
T ss_dssp EEEEETTSCGGG-CEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESS---SSCEEEEEEECSSSSCEE--EECCSCTT
T ss_pred EEEEECCCChHH-CeEEeccCCCceEEEEEEecCCCceEEEEEEEEecc---cCceeEEEEcCCCCCCcc--eEeecCCc
Confidence 999988765311 2334332 234556777889885 234542211 1458899998761 2443 22222221
Q ss_pred CCccccCcCceeCCCCcEEEEEecc--C-----CeeeEEEEeccCC--------eEEEecccccccCCCceeecccceee
Q 004735 297 PTIVESPTEPKWSSKGELFFVTDRK--N-----GFWNLHKWIESNN--------EVLAIYSLDAEFSRPLWVFGINSYEI 361 (732)
Q Consensus 297 ~~~~~~~~~~~wspDg~l~~~~~~~--~-----g~~~l~~~d~~~g--------~~~~l~~~~~~~~~~~w~~~~~~~~~ 361 (732)
..+.+..+|++++..... . ....|..++++++ +.+.+...+ +......+.+
T Consensus 292 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~ 357 (711)
T 4hvt_A 292 -------ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT-------ANEVFNFIST 357 (711)
T ss_dssp -------CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC-------TTEEEEEEEE
T ss_pred -------ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC-------CCCeEEEEEE
Confidence 234567777766644220 1 2345888888763 233332221 1111123334
Q ss_pred eeecCCCCEEEEEEEECCEEEEEEEECCCCc--eEE-eccC-CCceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 362 IQSHGEKNLIACSYRQNGRSYLGILDDFGHS--LSL-LDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 362 ~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~--~~~-lt~~-~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
.++.|+++..+++..+|+++++++++ .+. +..+ ...+... ..+++.+++..++...|.++|++|+. ++
T Consensus 358 -----~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 358 -----TKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp -----CSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred -----ECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 34578889999999999999987774 455 5554 2344433 34567899999999999999999988 66
Q ss_pred ceeeeeEEEecCCCCCccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH
Q 004735 436 LKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL 515 (732)
Q Consensus 436 ~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~ 515 (732)
.+.|+ .. ...+++..+ .++++.+++. ||.+++++++.|++.. ++++.|+||++|||++......+..
T Consensus 432 ~~~l~------~~-~~~~~~~~~-~~e~v~~~s~-DG~~i~~~l~~P~~~~----~~~~~P~vl~~HGG~~~~~~~~~~~ 498 (711)
T 4hvt_A 432 LKIIR------KA-LYSFDSENY-VLEQKEATSF-DGVKIPYFLVYKKGIK----FDGKNPTLLEAYGGFQVINAPYFSR 498 (711)
T ss_dssp EEEEE------CC-SSCCCGGGE-EEEEEEEECT-TSCEEEEEEEEETTCC----CSSCCCEEEECCCCTTCCCCCCCCH
T ss_pred EEEEe------cC-CcccCcccC-eeEEEEEECC-CCeEEEEEEEecCCCC----CCCCccEEEEECCCCCCCCCCcccH
Confidence 54443 22 234555555 6899999998 9999999999998732 3567899999999988877777776
Q ss_pred HH-HHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-
Q 004735 516 SI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA- 593 (732)
Q Consensus 516 ~~-~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~- 593 (732)
.. +.|+++||+|+.+|+||++++|..|.......++...++|+.+++++|++++.+|++||+|+|+|+||+++++++.
T Consensus 499 ~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~ 578 (711)
T 4hvt_A 499 IKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQ 578 (711)
T ss_dssp HHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHh
Confidence 55 5899999999999999999999999998888888888999999999999999999999999999999999999998
Q ss_pred CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcC---C---hhhhhhcCccccCCCCCC--CEEEEEeCCCCccChH
Q 004735 594 FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG---S---EKDYYEKSPINFVDKFSC--PIILFQGLEDKVVPPD 665 (732)
Q Consensus 594 ~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~sp~~~~~~i~~--P~Lii~G~~D~~v~~~ 665 (732)
+|++|+++|+.+|+.|+..+...... ..+... ++ + .+.+...+|+.++.++++ |+||+||++|.+||+.
T Consensus 579 ~pd~f~a~V~~~pv~D~~~~~~~~~~--~~~~~~-~G~p~~~~~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~ 655 (711)
T 4hvt_A 579 RPELFGAVACEVPILDMIRYKEFGAG--HSWVTE-YGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVHPW 655 (711)
T ss_dssp CGGGCSEEEEESCCCCTTTGGGSTTG--GGGHHH-HCCTTSHHHHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSCTH
T ss_pred CcCceEEEEEeCCccchhhhhccccc--hHHHHH-hCCCcCHHHHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCChH
Confidence 89999999999999997654332111 111111 12 1 245678899999999987 9999999999999999
Q ss_pred HHHHHHHHH-HhCCCCEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHHHhC
Q 004735 666 QARKIYKAL-KENGLPVALVEYEGEQHGFRKA-ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 666 ~~~~~~~~l-~~~g~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~fl~~~l~ 715 (732)
++.+++++| ++.|+++++++++++||++... .........+++||.++|+
T Consensus 656 ~s~~~~~aL~~~~g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~FL~~~Lg 707 (711)
T 4hvt_A 656 HGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANALK 707 (711)
T ss_dssp HHHHHHHHHTTCTTCCEEEEEESSCCSSSCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCCcCcCCcchHHHHHHHHHHHHHHHhC
Confidence 999999999 9999999999999999998543 4456677888999999997
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=215.14 Aligned_cols=212 Identities=13% Similarity=0.151 Sum_probs=145.9
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhh
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~ 542 (732)
.+++. . ||.+|++++|.|++ ..+.|+||++||+++......+...++.|+++||+|+++|+||++.++...
T Consensus 33 ~~~~~-~-dG~~i~g~l~~P~~-------~~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~ 103 (259)
T 4ao6_A 33 GFSLE-V-DGRTVPGVYWSPAE-------GSSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQ 103 (259)
T ss_dssp EEEEE-E-TTEEEEEEEEEESS-------SCCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC--------
T ss_pred EEEEe-e-CCeEEEEEEEeCCC-------CCCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCcc
Confidence 34444 3 89999999999976 556799999999976655566777899999999999999999987654332
Q ss_pred HHhhccCCC---------------cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCc
Q 004735 543 RERLLGRWG---------------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGV 607 (732)
Q Consensus 543 ~~~~~~~~~---------------~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~ 607 (732)
......... ...+.|..++++++... +|+++|+++|+|+||++++.++....+++++++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pri~Aav~~~~~ 181 (259)
T 4ao6_A 104 AGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKRIKVALLGLMG 181 (259)
T ss_dssp -----CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTTEEEEEEESCC
T ss_pred cccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCceEEEEEeccc
Confidence 211111100 01145777788888654 5789999999999999999999844457777776554
Q ss_pred CCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 608 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 608 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
..... ..++...+.+|++|+|++||++|.+||+++++++++++.. ...++++++
T Consensus 182 ~~~~~------------------------~~~~~~~a~~i~~P~Li~hG~~D~~vp~~~~~~l~~al~~--~~k~l~~~~ 235 (259)
T 4ao6_A 182 VEGVN------------------------GEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGT--KQKTLHVNP 235 (259)
T ss_dssp TTSTT------------------------HHHHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCC--SSEEEEEES
T ss_pred ccccc------------------------ccchhhhhccCCCCEEEEecCCCCCCCHHHHHHHHHHhCC--CCeEEEEeC
Confidence 32111 1123345667899999999999999999999999998854 356899998
Q ss_pred CCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 688 GEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 688 ~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+ +|... ...+..+.+++||+++|+
T Consensus 236 G-~H~~~---p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 236 G-KHSAV---PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp S-CTTCC---CHHHHTHHHHHHHHHHCC
T ss_pred C-CCCCc---CHHHHHHHHHHHHHHhcC
Confidence 7 45321 235678889999999986
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-24 Score=210.20 Aligned_cols=220 Identities=20% Similarity=0.260 Sum_probs=169.6
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
.+.++++. +|..+.++++.|.+ ..++.|+||++||..+. ...+...++.|+++||.|+++|++|.++...
T Consensus 6 ~~~~~~~~--~~~~~~~~~~~p~~------~~~~~p~vv~~HG~~g~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~ 75 (241)
T 3f67_A 6 AGETSIPS--QGENMPAYHARPKN------ADGPLPIVIVVQEIFGV--HEHIRDLCRRLAQEGYLAIAPELYFRQGDPN 75 (241)
T ss_dssp EEEEEEEE--TTEEEEEEEEEETT------CCSCEEEEEEECCTTCS--CHHHHHHHHHHHHTTCEEEEECTTTTTCCGG
T ss_pred eeeEEEec--CCcceEEEEecCCC------CCCCCCEEEEEcCcCcc--CHHHHHHHHHHHHCCcEEEEecccccCCCCC
Confidence 46678877 69999999999976 23567999999996433 3456678888999999999999998766543
Q ss_pred hhHHhh-------ccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH
Q 004735 541 EFRERL-------LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM 612 (732)
Q Consensus 541 ~~~~~~-------~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~ 612 (732)
.+.... .........+|+.++++++.+++ +|.++|+++|||+||.+++.++. +|+ +++++++++....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~-- 151 (241)
T 3f67_A 76 EYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVG-- 151 (241)
T ss_dssp GCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSC--
T ss_pred chhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccC--
Confidence 321110 00011123789999999999886 78899999999999999999998 776 7788877665321
Q ss_pred HHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 613 LRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
....+...+|...+.++++|+|+++|++|.++++++...+++.+++.+.+++++++++++|+
T Consensus 152 ------------------~~~~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 213 (241)
T 3f67_A 152 ------------------EKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHA 213 (241)
T ss_dssp ------------------CCCSSSCCCHHHHGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEETTCCTT
T ss_pred ------------------CCccCCccCHHHhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCcc
Confidence 11223345566667788999999999999999999999999999999999999999999998
Q ss_pred CCC-------cccHHHHHHHHHHHHHH
Q 004735 693 FRK-------AENIKFTLEQQMVFFAR 712 (732)
Q Consensus 693 ~~~-------~~~~~~~~~~~~~fl~~ 712 (732)
+.. .+...+.++.+++||++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~fl~~ 240 (241)
T 3f67_A 214 FNADYRASYHEESAKDGWQRMLAWFAQ 240 (241)
T ss_dssp TTCTTSTTCCHHHHHHHHHHHHHHHTT
T ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 843 34456778888888865
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=222.19 Aligned_cols=234 Identities=15% Similarity=0.087 Sum_probs=176.8
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
...+.++++. +|.+++++++.|.+ .++.|+||++||++... ..+....+.|+++||.|+++|+||.+.+
T Consensus 125 ~~~~~v~~~~--dg~~i~~~l~~p~~-------~~~~P~vl~~hG~~~~~--~~~~~~~~~l~~~G~~v~~~d~rG~G~s 193 (386)
T 2jbw_A 125 PPAERHELVV--DGIPMPVYVRIPEG-------PGPHPAVIMLGGLESTK--EESFQMENLVLDRGMATATFDGPGQGEM 193 (386)
T ss_dssp SCEEEEEEEE--TTEEEEEEEECCSS-------SCCEEEEEEECCSSCCT--TTTHHHHHHHHHTTCEEEEECCTTSGGG
T ss_pred CCeEEEEEEe--CCEEEEEEEEcCCC-------CCCCCEEEEeCCCCccH--HHHHHHHHHHHhCCCEEEEECCCCCCCC
Confidence 3578888887 79999999999976 35679999999974332 2233347888999999999999976432
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcc
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETH 618 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~ 618 (732)
. ..........+++.++++++.+++.++.++|+|+|||+||++++.++.++++|+++|+. |+.++........
T Consensus 194 ---~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~a~v~~-~~~~~~~~~~~~~ 266 (386)
T 2jbw_A 194 ---F---EYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISW-GGFSDLDYWDLET 266 (386)
T ss_dssp ---T---TTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEE-SCCSCSTTGGGSC
T ss_pred ---C---CCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcCCcceeEEEEe-ccCChHHHHHhcc
Confidence 0 01111112245788999999998888899999999999999999998878899999999 9887654332211
Q ss_pred hhhhhhhhhhcCC--h-----hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHH-HhCCCCEEEEEeCCCC
Q 004735 619 KFESRYIDNLVGS--E-----KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL-KENGLPVALVEYEGEQ 690 (732)
Q Consensus 619 ~~~~~~~~~~~~~--~-----~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l-~~~g~~~~~~~~~~~g 690 (732)
..........++. + ..+...++...+.++++|+|+++|++|. +++.++.++++.+ +. +++++++++++
T Consensus 267 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~---~~~~~~~~~~g 342 (386)
T 2jbw_A 267 PLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE---HLNLVVEKDGD 342 (386)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG---GEEEEEETTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CCHHHHHHHHHHhcCC---CcEEEEeCCCC
Confidence 1111111122221 1 3445677877888999999999999999 9999999999988 64 67999999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 691 HGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 691 H~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
|.+ .++..+..+.+.+||+++|+.
T Consensus 343 H~~--~~~~~~~~~~i~~fl~~~l~~ 366 (386)
T 2jbw_A 343 HCC--HNLGIRPRLEMADWLYDVLVA 366 (386)
T ss_dssp GGG--GGGTTHHHHHHHHHHHHHHTS
T ss_pred cCC--ccchHHHHHHHHHHHHHhcCC
Confidence 975 346678899999999999984
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=212.39 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=174.5
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-ccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC--h
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGYG--R 540 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~-~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g--~ 540 (732)
.++... +|..+.+++..|.... +.++.|+||++||+++. .....+...+..|+++||.|+++|+||.+... .
T Consensus 17 ~~~~~~-~g~~l~~~~~~~~~~~----~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~ 91 (276)
T 3hxk_A 17 STFSLN-DTAWVDFYQLQNPRQN----ENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTNYN 91 (276)
T ss_dssp EECCCB-TTBEEEEECCCC----------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCCSC
T ss_pred ccccCC-CCeEEEEEEeCCcccc----cCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCCCC
Confidence 456665 8888988776664311 13667999999997644 33344567888899999999999999875422 1
Q ss_pred hhHHhhccCCCcccHHHHHHHHHHHHhcC---CCCCCcEEEEEcChHHHHHHHHHhC--CCcceEEEeecCcCCHHHHHh
Q 004735 541 EFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALAF--RDTFKAGASLYGVADLSMLRA 615 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~~--p~~~~a~v~~~~~~d~~~~~~ 615 (732)
.+. ...+|+.++++++.+.. .+|.++|+|+|||+||++++.++.. +.+++++++.+|+.++.....
T Consensus 92 ~~~---------~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~ 162 (276)
T 3hxk_A 92 FLS---------QNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWP 162 (276)
T ss_dssp THH---------HHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCS
T ss_pred cCc---------hHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCC
Confidence 111 23688999999998763 4788999999999999999999885 889999999999877543311
Q ss_pred hcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004735 616 ETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
....+ ..++. .+. ...++...+.++.+|+|++||++|.++|+.++..+++.+++.+.+++++++++++|++..
T Consensus 163 ~~~~~-----~~~~~-~~~-~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 235 (276)
T 3hxk_A 163 SDLSH-----FNFEI-ENI-SEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSL 235 (276)
T ss_dssp SSSSS-----SCCCC-SCC-GGGBTTTTCCTTSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEESCCCTTCTT
T ss_pred cchhh-----hhcCc-hhh-hhCChhhccccCCCCEEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEECCCCCCccc
Confidence 11111 11111 112 556777888889999999999999999999999999999999999999999999998754
Q ss_pred ------------cccHHHHHHHHHHHHHHHhCC
Q 004735 696 ------------AENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 696 ------------~~~~~~~~~~~~~fl~~~l~~ 716 (732)
.+...++++.+.+||++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~ 268 (276)
T 3hxk_A 236 ANRTTAPSDAYCLPSVHRWVSWASDWLERQIKN 268 (276)
T ss_dssp CSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHHT
T ss_pred cCccccccccccCchHHHHHHHHHHHHHhCccc
Confidence 224578889999999998863
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-23 Score=208.11 Aligned_cols=232 Identities=17% Similarity=0.142 Sum_probs=166.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCC-CCCCCCCCCCCEEEEEcCCCCC-ccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNP-IYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~-~~~~~~~~~~P~vl~~HGg~~~-~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+.+++.. +|..+.+.+|.|... .+. ...+.|+||++|||++. .....+...+..|+++||.|+++|+||.+..+
T Consensus 5 ~~~~~~~--~~~~~~~~~~~p~~~~~~~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~ 80 (277)
T 3bxp_A 5 EQRTLNT--AAHPFQITAYWLDQISDFE--TAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQ 80 (277)
T ss_dssp EEEEECS--TTCCEEEEEEEECCCCSSS--CCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTC
T ss_pred EEEEecc--CCCcceEEEEeCCcccccc--cCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCC
Confidence 5566644 688888899988731 011 24567999999997543 23344566788899999999999999854222
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcC---CCCCCcEEEEEcChHHHHHHHHHh-C--------------CCcceEE
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA-F--------------RDTFKAG 601 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~-~--------------p~~~~a~ 601 (732)
..+ ....+|+.++++++.+.. .+++++|+|+|||+||++++.++. + +.+++++
T Consensus 81 ~~~---------~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 151 (277)
T 3bxp_A 81 SVY---------PWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAI 151 (277)
T ss_dssp CCT---------THHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEE
T ss_pred ccC---------chHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEE
Confidence 111 133688889999887752 367789999999999999999987 4 7889999
Q ss_pred EeecCcCCHHHHHhhcchhhhhhhh-hhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCC
Q 004735 602 ASLYGVADLSMLRAETHKFESRYID-NLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 680 (732)
Q Consensus 602 v~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (732)
++.+|..++....... ..+. .+++ .+...+|...+.++.+|+|++||++|.++|++++.++++.+++.+.+
T Consensus 152 v~~~p~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~ 223 (277)
T 3bxp_A 152 ILGYPVIDLTAGFPTT-----SAARNQITT---DARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVA 223 (277)
T ss_dssp EEESCCCBTTSSSSSS-----HHHHHHHCS---CGGGSBGGGGCCTTSCCEEEEECTTCCCSCTHHHHHHHHHHHHTTCC
T ss_pred EEeCCcccCCCCCCCc-----cccchhccc---hhhhcCHhhccccCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCe
Confidence 9999987643211100 0011 1111 23345677777888899999999999999999999999999999999
Q ss_pred EEEEEeCCCCccCCCc--------------ccHHHHHHHHHHHHHHHh
Q 004735 681 VALVEYEGEQHGFRKA--------------ENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 681 ~~~~~~~~~gH~~~~~--------------~~~~~~~~~~~~fl~~~l 714 (732)
++++++++++|.+... +...++++.+.+||+++.
T Consensus 224 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 224 TAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp EEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 9999999999976432 225778889999998764
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=201.67 Aligned_cols=231 Identities=21% Similarity=0.273 Sum_probs=163.5
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhH
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~ 543 (732)
+++.. +|.+++++++.|.. ..++.|+||++||.+.......|...++.|+++||.|+++|+||.+.......
T Consensus 4 ~~~~~--~g~~l~~~~~~p~~------~~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~ 75 (251)
T 2wtm_A 4 MYIDC--DGIKLNAYLDMPKN------NPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFE 75 (251)
T ss_dssp EEEEE--TTEEEEEEEECCTT------CCSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGG
T ss_pred eEEec--CCcEEEEEEEccCC------CCCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCCCCCCccc
Confidence 55654 79999999998864 12456899999998555324556678888999999999999998765432211
Q ss_pred HhhccCCC-cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc---
Q 004735 544 ERLLGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH--- 618 (732)
Q Consensus 544 ~~~~~~~~-~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~--- 618 (732)
.+. ....+|+.++++++.+...+ ++++++||||||.+++.++. +|++++++|+.+|............
T Consensus 76 -----~~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 148 (251)
T 2wtm_A 76 -----DHTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLG 148 (251)
T ss_dssp -----GCCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETT
T ss_pred -----cCCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhcc
Confidence 111 12367888889998765433 48999999999999999988 9999999999999765433211100
Q ss_pred -hhh----hhhhhhhcC---Chhhh---hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 619 -KFE----SRYIDNLVG---SEKDY---YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 619 -~~~----~~~~~~~~~---~~~~~---~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
.+. ...+....+ ....+ ...++...+.++++|+|+++|++|.++|++.++++.+.++ ++++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~ 224 (251)
T 2wtm_A 149 LKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYK----NCKLVTIP 224 (251)
T ss_dssp EECBTTBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEET
T ss_pred ccCCchhcchHHhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcChHHHHHHHHhCC----CcEEEEEC
Confidence 000 000000000 00011 1123334456788999999999999999999988877663 67999999
Q ss_pred CCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 688 GEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 688 ~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++||.+ .+..+++.+.+.+||++++.
T Consensus 225 ~~gH~~--~~~~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 225 GDTHCY--DHHLELVTEAVKEFMLEQIA 250 (251)
T ss_dssp TCCTTC--TTTHHHHHHHHHHHHHHHHC
T ss_pred CCCccc--chhHHHHHHHHHHHHHHhcc
Confidence 999987 67888999999999998875
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=228.32 Aligned_cols=258 Identities=16% Similarity=0.163 Sum_probs=185.6
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCc----cC-CcccH-HH---HHHHHCCCEEEEEc
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE----AR-GILNL-SI---QYWTSRGWAFVDVN 531 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~----~~-~~~~~-~~---~~l~~~G~~v~~~d 531 (732)
.+.+.++.. ||.+++++++.|.+ .++.|+||++||..... .. ..+.. .. +.|+++||+|+.+|
T Consensus 25 ~~~v~i~~~-DG~~L~~~~~~P~~-------~~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D 96 (615)
T 1mpx_A 25 KREVMIPMR-DGVKLHTVIVLPKG-------AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 96 (615)
T ss_dssp EEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred EEEEEEECC-CCCEEEEEEEeCCC-------CCCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEEC
Confidence 467888887 99999999999975 35679999999863321 01 11211 22 78999999999999
Q ss_pred CCCCCCCChhhHHhh-----ccCCCcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEee
Q 004735 532 YGGSTGYGREFRERL-----LGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASL 604 (732)
Q Consensus 532 ~rG~~g~g~~~~~~~-----~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~ 604 (732)
+||+++++..+.... ...++..+++|+.++++||.++ +..| .||+++|+||||+++++++. ++++++++|+.
T Consensus 97 ~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~ 175 (615)
T 1mpx_A 97 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPE 175 (615)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred CCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEec
Confidence 999988766543321 1223337799999999999998 6666 59999999999999999987 89999999999
Q ss_pred cCcCCH-H-HHH--------hhc---------------------chhh------------h-------hhhhhhcC---C
Q 004735 605 YGVADL-S-MLR--------AET---------------------HKFE------------S-------RYIDNLVG---S 631 (732)
Q Consensus 605 ~~~~d~-~-~~~--------~~~---------------------~~~~------------~-------~~~~~~~~---~ 631 (732)
+++.|+ . ... ... ..+. . .++..... .
T Consensus 176 ~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 255 (615)
T 1mpx_A 176 SPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAY 255 (615)
T ss_dssp SCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSS
T ss_pred CCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCCc
Confidence 999883 3 100 000 0000 0 00011110 2
Q ss_pred hhhhhhcCccccCCC--CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCC---EEEEEeCCCCccCCC-----------
Q 004735 632 EKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPPDQARKIYKALKENGLP---VALVEYEGEQHGFRK----------- 695 (732)
Q Consensus 632 ~~~~~~~sp~~~~~~--i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~---~~~~~~~~~gH~~~~----------- 695 (732)
.+.|...+|+.++++ |++|+|++||.+|.. ++.++.+++++|+++|++ .++++.|. +|++..
T Consensus 256 d~~w~~~Sp~~~~~~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~~~~~~~~f 333 (615)
T 1mpx_A 256 DAFWQEQALDKVMARTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNF 333 (615)
T ss_dssp CHHHHTTCHHHHHHTSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEEC
T ss_pred ChhhhhcChhhhhhccCCCCCEEEeecccCcc-ccccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccccccCcccc
Confidence 356677899999999 999999999999997 888999999999998743 88999887 697511
Q ss_pred -cc-cHHHHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 004735 696 -AE-NIKFTLEQQMVFFARVVGHFDVADEIIPIKID 729 (732)
Q Consensus 696 -~~-~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~ 729 (732)
.+ ......+.+++||+++|++....+..|++.+.
T Consensus 334 ~~~~~~~~~~~~~~~wfd~~Lkg~~g~~~~p~v~~~ 369 (615)
T 1mpx_A 334 EGDTARQFRHDVLRPFFDQYLVDGAPKADTPPVFIY 369 (615)
T ss_dssp SSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEE
T ss_pred CcccchhhhhhHHHHHHHHHhcCCCCCCCCCCEEEE
Confidence 11 12223678899999999976333456777653
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=216.19 Aligned_cols=224 Identities=15% Similarity=0.220 Sum_probs=162.7
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcc
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 553 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~ 553 (732)
.+.+.++.|++ .++.|+||++||+++. .+...++.|+++||.|+++|+||.++.... ....
T Consensus 144 ~l~~~l~~P~~-------~~~~P~Vv~~hG~~~~----~~~~~a~~La~~Gy~V~a~D~rG~g~~~~~--------~~~~ 204 (422)
T 3k2i_A 144 RVRATLFLPPG-------PGPFPGIIDIFGIGGG----LLEYRASLLAGHGFATLALAYYNFEDLPNN--------MDNI 204 (422)
T ss_dssp TEEEEEEECSS-------SCCBCEEEEECCTTCS----CCCHHHHHHHTTTCEEEEEECSSSTTSCSS--------CSCE
T ss_pred cEEEEEEcCCC-------CCCcCEEEEEcCCCcc----hhHHHHHHHHhCCCEEEEEccCCCCCCCCC--------cccC
Confidence 68889999976 4567999999998543 334568889999999999999987654322 2224
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc-----chh--hhh--
Q 004735 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-----HKF--ESR-- 623 (732)
Q Consensus 554 ~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-----~~~--~~~-- 623 (732)
..+|+.++++++.++..++.++|+|+|||+||++++.++. +|+ ++++|+++|........... ... ...
T Consensus 205 ~~~d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (422)
T 3k2i_A 205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRI 283 (422)
T ss_dssp ETHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGC
T ss_pred CHHHHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhc
Confidence 5899999999999998888899999999999999999988 887 99999998875321100000 000 000
Q ss_pred --------hhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHH-HHHHHHHHhCCCC-EEEEEeCCCCccC
Q 004735 624 --------YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKIYKALKENGLP-VALVEYEGEQHGF 693 (732)
Q Consensus 624 --------~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~g~~-~~~~~~~~~gH~~ 693 (732)
.+...+.+.......+....+.++++|+|+++|++|.++|..+. +.+.+.+++.+++ +++++|+++||.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~~gagH~~ 363 (422)
T 3k2i_A 284 KVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYI 363 (422)
T ss_dssp EECTTSCEECTTCBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTCCCCEEEEETTCCSCC
T ss_pred ccCcchhHHHHHHHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEECCCCCEE
Confidence 00000011111122233344677899999999999999999866 6899999999887 8999999999987
Q ss_pred CCc---------------------------ccHHHHHHHHHHHHHHHhCCC
Q 004735 694 RKA---------------------------ENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 694 ~~~---------------------------~~~~~~~~~~~~fl~~~l~~~ 717 (732)
..+ +...+.++.+++||+++|+..
T Consensus 364 ~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~ 414 (422)
T 3k2i_A 364 EPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGT 414 (422)
T ss_dssp CSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 322 456789999999999999843
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=220.80 Aligned_cols=234 Identities=13% Similarity=0.169 Sum_probs=160.7
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcc
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 553 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~ 553 (732)
.+.+++|.|++ .++.|+||++||+++. .+...++.|+++||.|+++|+||.++.+.. ....
T Consensus 160 ~l~~~l~~P~~-------~~~~P~Vv~lhG~~~~----~~~~~a~~La~~Gy~Vla~D~rG~~~~~~~--------~~~~ 220 (446)
T 3hlk_A 160 RVRGTLFLPPE-------PGPFPGIVDMFGTGGG----LLEYRASLLAGKGFAVMALAYYNYEDLPKT--------METL 220 (446)
T ss_dssp TEEEEEEECSS-------SCCBCEEEEECCSSCS----CCCHHHHHHHTTTCEEEEECCSSSTTSCSC--------CSEE
T ss_pred eEEEEEEeCCC-------CCCCCEEEEECCCCcc----hhhHHHHHHHhCCCEEEEeccCCCCCCCcc--------hhhC
Confidence 68889999975 4567999999998543 234458889999999999999987654332 1224
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc-----ch--hhh---
Q 004735 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-----HK--FES--- 622 (732)
Q Consensus 554 ~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-----~~--~~~--- 622 (732)
..+|+.++++++.++..+|.++|+|+|||+||++++.++. +|+ ++++|+++|........... .. +..
T Consensus 221 ~~~d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (446)
T 3hlk_A 221 HLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRI 299 (446)
T ss_dssp EHHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGC
T ss_pred CHHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhcc
Confidence 5899999999999998888999999999999999999988 887 99999998865321100000 00 000
Q ss_pred -------hhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHH-HHHHHHHHhCCCC-EEEEEeCCCCccC
Q 004735 623 -------RYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKIYKALKENGLP-VALVEYEGEQHGF 693 (732)
Q Consensus 623 -------~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~g~~-~~~~~~~~~gH~~ 693 (732)
..+...+.+............+.++++|+|+++|++|.+++..+. ..+.+.|++.|.+ +++++|+++||.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~pgagH~~ 379 (446)
T 3hlk_A 300 KVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYI 379 (446)
T ss_dssp EECSSSCEECTTCBCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTCCCCEEEEETTBCSCC
T ss_pred ccccchHHHHHHHHhchhhccccccccCHHHCCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCCCCcEEEEECCCCCeE
Confidence 000000011111111122233667889999999999999999554 7899999999988 8999999999987
Q ss_pred C---------------------------CcccHHHHHHHHHHHHHHHhCCCCCCCCCCccc
Q 004735 694 R---------------------------KAENIKFTLEQQMVFFARVVGHFDVADEIIPIK 727 (732)
Q Consensus 694 ~---------------------------~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~ 727 (732)
. ..++..+.++.+++||+++|+.......-++++
T Consensus 380 ~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~~~~~~~~~~~ 440 (446)
T 3hlk_A 380 EPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGHEGTIPSKVLE 440 (446)
T ss_dssp CSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCCCCCCchhhhh
Confidence 3 122367789999999999998544444444443
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=194.98 Aligned_cols=210 Identities=17% Similarity=0.262 Sum_probs=164.7
Q ss_pred CcE--EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCc---cCCcccHHHHHHHHCCCEEEEEcCCC
Q 004735 460 LPE--LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 460 ~~~--~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~---~~~~~~~~~~~l~~~G~~v~~~d~rG 534 (732)
..| .+.+.+. +| .+.++++.|.+ ++.|+||++||++... ....+...++.|+++||.|+++|+||
T Consensus 20 ~~e~~~~~~~~~-~g-~l~~~~~~p~~--------~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g 89 (249)
T 2i3d_A 20 QGHMPEVIFNGP-AG-RLEGRYQPSKE--------KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRS 89 (249)
T ss_dssp ----CEEEEEET-TE-EEEEEEECCSS--------TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred cCceeEEEEECC-Cc-eEEEEEEcCCC--------CCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCC
Confidence 346 8889986 66 89999998853 4569999999964222 12234567888999999999999998
Q ss_pred CCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH
Q 004735 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 613 (732)
Q Consensus 535 ~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~ 613 (732)
.+.....+ .......+|+.++++++.++. .+.++++++|||+||++++.++. +|+ ++++|+.+|..+...
T Consensus 90 ~G~s~~~~------~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~- 160 (249)
T 2i3d_A 90 IGRSQGEF------DHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD- 160 (249)
T ss_dssp STTCCSCC------CSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC-
T ss_pred CCCCCCCC------CCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh-
Confidence 65433221 112234689999999998875 47779999999999999999998 888 999999999865210
Q ss_pred HhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHh-CCCCEEEEEeCCCCcc
Q 004735 614 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE-NGLPVALVEYEGEQHG 692 (732)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~-~g~~~~~~~~~~~gH~ 692 (732)
...+.++++|+|+++|++|.+++++.+.++++.+++ .+.+++++++++++|.
T Consensus 161 ---------------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~ 213 (249)
T 2i3d_A 161 ---------------------------FSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHF 213 (249)
T ss_dssp ---------------------------CTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTT
T ss_pred ---------------------------hhhhcccCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEECCCCcc
Confidence 123457789999999999999999999999999986 4568899999999998
Q ss_pred CCCcccHHHHHHHHHHHHHHHhCCC
Q 004735 693 FRKAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 693 ~~~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
+. +...++.+.+.+||++++...
T Consensus 214 ~~--~~~~~~~~~i~~fl~~~l~~~ 236 (249)
T 2i3d_A 214 FN--GKVDELMGECEDYLDRRLNGE 236 (249)
T ss_dssp CT--TCHHHHHHHHHHHHHHHHTTC
T ss_pred cc--cCHHHHHHHHHHHHHHhcCCC
Confidence 75 477889999999999999743
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-23 Score=212.47 Aligned_cols=235 Identities=13% Similarity=0.107 Sum_probs=171.8
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
.+.+.+.. +|.++.++++.|. +.|+||++||++.. ...+...+..|+++||.|+++|+||.+....
T Consensus 6 ~~~~~~~~--~g~~l~~~~~~p~----------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~g~s~~ 71 (290)
T 3ksr_A 6 LSSIEIPV--GQDELSGTLLTPT----------GMPGVLFVHGWGGS--QHHSLVRAREAVGLGCICMTFDLRGHEGYAS 71 (290)
T ss_dssp EEEEEEEE--TTEEEEEEEEEEE----------SEEEEEEECCTTCC--TTTTHHHHHHHHTTTCEEECCCCTTSGGGGG
T ss_pred eeeEEecC--CCeEEEEEEecCC----------CCcEEEEeCCCCCC--cCcHHHHHHHHHHCCCEEEEeecCCCCCCCC
Confidence 45677776 6899999999884 35999999998543 4566778889999999999999997665433
Q ss_pred hhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc-
Q 004735 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH- 618 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~- 618 (732)
.... .. -....+|+.++++++.+++.+|.++|+|+|||+||++++.++. +| ++++++.+|.......+....
T Consensus 72 ~~~~---~~-~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~~~~~~ 145 (290)
T 3ksr_A 72 MRQS---VT-RAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHWDQPKV 145 (290)
T ss_dssp GTTT---CB-HHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCTTSBHH
T ss_pred Cccc---cc-HHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhhhcccc
Confidence 2110 00 0123689999999999988788899999999999999999998 66 788888888764321110000
Q ss_pred hhh-hhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcc
Q 004735 619 KFE-SRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697 (732)
Q Consensus 619 ~~~-~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 697 (732)
.+. ...+..+......+...++...+.++++|+|+++|++|.++++++...+++.++..+ +++++++++++|.+...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~ 224 (290)
T 3ksr_A 146 SLNADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVIAGADHALSVKE 224 (290)
T ss_dssp HHHHSTTHHHHTTSCCCGGGCHHHHHHHHCCSEEEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEETTCCTTCCSHH
T ss_pred cccCChhhhhhhhhhhhhccccHHHHHHhcCCCeEEEEecCCcccChHHHHHHHHHhccCC-CceEEEcCCCCCCCCcch
Confidence 000 001111111111222233344566788999999999999999999999999997765 789999999999887666
Q ss_pred cHHHHHHHHHHHHHHHhCC
Q 004735 698 NIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 698 ~~~~~~~~~~~fl~~~l~~ 716 (732)
....+.+.+.+||++++..
T Consensus 225 ~~~~~~~~i~~fl~~~~~~ 243 (290)
T 3ksr_A 225 HQQEYTRALIDWLTEMVVG 243 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7788999999999999864
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=208.95 Aligned_cols=245 Identities=15% Similarity=0.137 Sum_probs=167.3
Q ss_pred CCCCcEEEEeeccCCCeEEEEEEEc-CCCCCC----------------CCCCCCCCCEEEEEcCCCCCccCCc---ccHH
Q 004735 457 YFSLPELIEFPTEVPGQKAYAYYYP-PSNPIY----------------QASPEEKPPLLVKSHGGPTSEARGI---LNLS 516 (732)
Q Consensus 457 ~~~~~~~i~~~~~~~g~~i~~~~~~-P~~~~~----------------~~~~~~~~P~vl~~HGg~~~~~~~~---~~~~ 516 (732)
.....+.+.+... +| +.+.+|. |....- .....++.|+||++|||++...... +...
T Consensus 60 ~~v~~~dv~~~~~-~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~ 136 (365)
T 3ebl_A 60 EGVSSFDHIIDQS-VG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSL 136 (365)
T ss_dssp TTEEEEEEEEETT-TT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHH
T ss_pred CCCceeeEEecCC-CC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHH
Confidence 3345677888876 77 6666676 764200 0012457899999999876433322 4556
Q ss_pred HHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcC----CCCCC-cEEEEEcChHHHHHHH
Q 004735 517 IQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG----KADEK-RLCITGGSAGGYTTLA 590 (732)
Q Consensus 517 ~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d~~-ri~i~G~S~GG~~a~~ 590 (732)
++.|+.+ ||+|+.+|||+++++... ..++|+.++++|+.++. .+|++ ||+|+|+|+||++++.
T Consensus 137 ~~~la~~~g~~Vv~~dyR~~p~~~~~-----------~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~ 205 (365)
T 3ebl_A 137 CRRFVKLSKGVVVSVNYRRAPEHRYP-----------CAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHH 205 (365)
T ss_dssp HHHHHHHHTSEEEEECCCCTTTSCTT-----------HHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHH
T ss_pred HHHHHHHCCCEEEEeeCCCCCCCCCc-----------HHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHH
Confidence 7778775 999999999987654321 23789999999999764 68898 9999999999999998
Q ss_pred HHh-CCC---cceEEEeecCcCCHHHHHhhcch----------hhhhhhhhhcC--ChhhhhhcCccc-cCCCCC----C
Q 004735 591 ALA-FRD---TFKAGASLYGVADLSMLRAETHK----------FESRYIDNLVG--SEKDYYEKSPIN-FVDKFS----C 649 (732)
Q Consensus 591 ~~~-~p~---~~~a~v~~~~~~d~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~~sp~~-~~~~i~----~ 649 (732)
++. .++ +++++|+++|+.+.......... ....+...... ........+|+. ....++ +
T Consensus 206 ~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~p 285 (365)
T 3ebl_A 206 VAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFA 285 (365)
T ss_dssp HHHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCCCTTSCCC
T ss_pred HHHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhhccCCCC
Confidence 887 444 79999999999875321111000 00111111111 111112223332 233344 5
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCC---CcccHHHHHHHHHHHHHHHhCCC
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR---KAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
|+||+||++|.++ .++.+++++|++.|++++++++++++|+|. ..+...+.++.+.+||+++++..
T Consensus 286 P~Li~~G~~D~l~--~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~~~ 354 (365)
T 3ebl_A 286 KSLIIVSGLDLTC--DRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLYYG 354 (365)
T ss_dssp CEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC--
T ss_pred CEEEEEcCcccch--hHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 8999999999654 567899999999999999999999999875 34667889999999999999843
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=211.86 Aligned_cols=239 Identities=18% Similarity=0.223 Sum_probs=172.4
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
.+.+.+++.+. +|.+++++++.|.+. .++.|+||++||+++... +......++++||.|+++|+||.+++
T Consensus 66 ~~~~~~~~~~~-dg~~i~~~~~~P~~~------~~~~p~vv~~HG~g~~~~---~~~~~~~l~~~G~~v~~~d~rG~g~s 135 (337)
T 1vlq_A 66 VEAYDVTFSGY-RGQRIKGWLLVPKLE------EEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSG 135 (337)
T ss_dssp EEEEEEEEECG-GGCEEEEEEEEECCS------CSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCS
T ss_pred eEEEEEEEEcC-CCCEEEEEEEecCCC------CCCccEEEEEcCCCCCCC---CchhhcchhhCCCEEEEecCCCCCCc
Confidence 35788999987 899999999999751 356799999999865532 22334567889999999999998754
Q ss_pred ChhhHHhh------ccCCC---------------cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC
Q 004735 539 GREFRERL------LGRWG---------------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD 596 (732)
Q Consensus 539 g~~~~~~~------~~~~~---------------~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~ 596 (732)
+....... ...+. ...++|+.++++++.+++.+|.++|+++|||+||++++.++. +|
T Consensus 136 ~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p- 214 (337)
T 1vlq_A 136 WLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK- 214 (337)
T ss_dssp SSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-
T ss_pred ccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-
Confidence 32100000 00000 024789999999999998888899999999999999999988 77
Q ss_pred cceEEEeecCcC-CHHHHHhhcch--hh--hhhhhhhcCC-h---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHH
Q 004735 597 TFKAGASLYGVA-DLSMLRAETHK--FE--SRYIDNLVGS-E---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA 667 (732)
Q Consensus 597 ~~~a~v~~~~~~-d~~~~~~~~~~--~~--~~~~~~~~~~-~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (732)
+++++++.+|.. ++......... +. ..++...... . ..+...+|...+.++++|+|+++|++|.++|+.++
T Consensus 215 ~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~p~~~~ 294 (337)
T 1vlq_A 215 KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTV 294 (337)
T ss_dssp SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred CccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCCCEEEEeeCCCCCCCchhH
Confidence 599999998854 44433211110 00 1111111111 1 12234567777889999999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 668 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 668 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.+++++++. +++++++++++|.+.. .+..+.+++||.++|+
T Consensus 295 ~~~~~~l~~---~~~~~~~~~~gH~~~~----~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 295 FAAYNYYAG---PKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFE 335 (337)
T ss_dssp HHHHHHCCS---SEEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCC---CcEEEEcCCCCCCCcc----hhhHHHHHHHHHHHHh
Confidence 999888764 6899999999998632 4567889999999986
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=227.13 Aligned_cols=258 Identities=17% Similarity=0.182 Sum_probs=186.7
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc---CC---cccH---HH-HHHHHCCCEEEEE
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RG---ILNL---SI-QYWTSRGWAFVDV 530 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~---~~---~~~~---~~-~~l~~~G~~v~~~ 530 (732)
.+.+.++.. ||.+|++++|.|.+ .++.|+||++||...... .. .+.. .. +.|+++||+|+.+
T Consensus 37 ~~~v~i~~~-DG~~L~~~l~~P~~-------~~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~ 108 (652)
T 2b9v_A 37 KREVMVPMR-DGVKLYTVIVIPKN-------ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ 108 (652)
T ss_dssp EEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred EEEEEEECC-CCcEEEEEEEecCC-------CCCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEE
Confidence 467889888 99999999999976 356799999997532210 01 1111 12 8899999999999
Q ss_pred cCCCCCCCChhhHHhh--ccCCC---cccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEe
Q 004735 531 NYGGSTGYGREFRERL--LGRWG---IVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 603 (732)
Q Consensus 531 d~rG~~g~g~~~~~~~--~~~~~---~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~ 603 (732)
|+||+++++..+.... ...++ ..+++|+.++++||.++ +.+| .||+|+|+|+||++++.++. +++.++++|+
T Consensus 109 D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~ 187 (652)
T 2b9v_A 109 DIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAP 187 (652)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEE
T ss_pred ecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEe
Confidence 9999988876654321 11223 46799999999999998 7776 69999999999999999988 8999999999
Q ss_pred ecCcCCHHH--HH--hhc-c----hh------------------hhhh-----------------------hhhhc---C
Q 004735 604 LYGVADLSM--LR--AET-H----KF------------------ESRY-----------------------IDNLV---G 630 (732)
Q Consensus 604 ~~~~~d~~~--~~--~~~-~----~~------------------~~~~-----------------------~~~~~---~ 630 (732)
.+++.|+.. .. ... . .+ ...| +...+ .
T Consensus 188 ~~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 267 (652)
T 2b9v_A 188 ESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPA 267 (652)
T ss_dssp EEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCS
T ss_pred cccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCC
Confidence 999888532 00 000 0 00 0000 00111 1
Q ss_pred ChhhhhhcCccccCCC--CCCCEEEEEeCCCCccChHHHHHHHHHHHhCC--CCEEEEEeCCCCccCCC-----------
Q 004735 631 SEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPPDQARKIYKALKENG--LPVALVEYEGEQHGFRK----------- 695 (732)
Q Consensus 631 ~~~~~~~~sp~~~~~~--i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g--~~~~~~~~~~~gH~~~~----------- 695 (732)
..+.|...+|..++++ |++|+|++||.+|.+ +..++.+++++|++++ ++.++++.+. +|+...
T Consensus 268 ~d~yw~~~Sp~~~~~~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~~~~~f 345 (652)
T 2b9v_A 268 YDAFWQGQALDKILAQRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEF 345 (652)
T ss_dssp SSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEEC
T ss_pred CChHHhcCChhhhhhcCCCCCCEEEEeecCCcc-ccccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccCCcccc
Confidence 1245677899889999 999999999999997 6678999999999998 8889998886 697521
Q ss_pred --cccHHHHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 004735 696 --AENIKFTLEQQMVFFARVVGHFDVADEIIPIKID 729 (732)
Q Consensus 696 --~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~ 729 (732)
.+......+.+++||+++|++....+..|++.+.
T Consensus 346 ~~~~~~~~~~~~~~~wfd~~Lkg~~g~~~~p~v~~~ 381 (652)
T 2b9v_A 346 EGDTAHQYRRDVFRPFFDEYLKPGSASVHLPDAIIY 381 (652)
T ss_dssp SSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEE
T ss_pred ccccchhhhhhHHHHHHHHHhCCCCCCCCCCCeEEE
Confidence 1112334688899999999976333457777664
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=205.45 Aligned_cols=230 Identities=18% Similarity=0.249 Sum_probs=167.9
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCc-cCCcccHHHHHHHH-CCCEEEEEcCCCCCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTS-RGWAFVDVNYGGSTGY 538 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~-~~~~~~~~~~~l~~-~G~~v~~~d~rG~~g~ 538 (732)
.+.+++++. +| .+.+.+|.|.. ...|+||++|||++.. ....+......|+. .||.|+++|||+++++
T Consensus 63 ~~~~~~~~~-~g-~i~~~~~~p~~--------~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~ 132 (326)
T 3ga7_A 63 TRTCAVPTP-YG-DVTTRLYSPQP--------TSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQA 132 (326)
T ss_dssp EEEEEECCT-TS-CEEEEEEESSS--------SCSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTS
T ss_pred eEEEEeecC-CC-CeEEEEEeCCC--------CCCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCC
Confidence 378899887 77 89999999975 2239999999987443 23445567777877 7999999999987664
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcC---CCCCCcEEEEEcChHHHHHHHHHh-CCCc------ceEEEeecCcC
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA-FRDT------FKAGASLYGVA 608 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~-~p~~------~~a~v~~~~~~ 608 (732)
... ..++|+.++++|+.++. .+|++||+|+|+|+||++++.++. ++++ ++++++.+|+.
T Consensus 133 ~~~-----------~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~ 201 (326)
T 3ga7_A 133 RYP-----------QAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLY 201 (326)
T ss_dssp CTT-----------HHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCC
T ss_pred CCC-----------cHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEecccc
Confidence 321 23689999999998863 678999999999999999999887 5553 89999999987
Q ss_pred CHHHHHhh----------cchhhhhhhhhhcCChhhhhhcCcc-----ccCCCCCCCEEEEEeCCCCccChHHHHHHHHH
Q 004735 609 DLSMLRAE----------THKFESRYIDNLVGSEKDYYEKSPI-----NFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673 (732)
Q Consensus 609 d~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~sp~-----~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (732)
+....... .......+...+..... ...+|. ..+.+..+|+||+||+.|.++ .++.++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~--~~~~~~~~~ 277 (326)
T 3ga7_A 202 GLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDE--DRESPWYCLFNNDLTRDVPPCFIASAEFDPLI--DDSRLLHQT 277 (326)
T ss_dssp SCSCCHHHHHCCCTTTTCCHHHHHHHHHHHCSSGG--GGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH--HHHHHHHHH
T ss_pred ccCCChhHhhhcCCCCCCCHHHHHHHHHHhCCCCC--ccCCcccCCCcchhhcCCCCEEEEecCcCcCH--HHHHHHHHH
Confidence 64321100 00001112222221111 111222 123345679999999999987 588999999
Q ss_pred HHhCCCCEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHHhC
Q 004735 674 LKENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 674 l~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 715 (732)
|++.|+++++++|++++|+|.. .+...+.++.+.+||+++++
T Consensus 278 l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~ 323 (326)
T 3ga7_A 278 LQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMK 323 (326)
T ss_dssp HHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999843 23457899999999999986
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-23 Score=209.04 Aligned_cols=235 Identities=14% Similarity=0.115 Sum_probs=169.9
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCC-CCCCCCCCCCCEEEEEcCCCCCc-cCCcccHHHHHHHHCCCEEEEEcCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNP-IYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~-~~~~~~~~~~P~vl~~HGg~~~~-~~~~~~~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
.+.+.+.+... +|..+.+.+| |+.. .+. ..++.|+||++||+++.. ....+...+..|+++||.|+++|+||.+
T Consensus 17 ~~~~~v~~~~~-~g~~~~~~~y-p~~~~~~~--~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~ 92 (283)
T 3bjr_A 17 FQGMQVIKQKL-TATCAQLTGY-LHQPDTNA--HQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLT 92 (283)
T ss_dssp CCSSEEEEEEC-TTSSCEEEEE-EC----------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTT
T ss_pred CCCcceEEeec-CCCceeEEEe-cCCccccc--cCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCC
Confidence 34567888876 8887888888 6541 000 145679999999976432 2334566788899999999999999876
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcC---CCCCCcEEEEEcChHHHHHHHHHh-CCCc-------------ce
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA-FRDT-------------FK 599 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~-~p~~-------------~~ 599 (732)
..+..+ .....|+.++++++.+.. .+|.++++|+|||+||++++.++. +|++ ++
T Consensus 93 ~~~~~~---------~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (283)
T 3bjr_A 93 DQQPLG---------LAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPN 163 (283)
T ss_dssp TCSSCB---------THHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCS
T ss_pred ccccCc---------hhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCcc
Confidence 542011 123678889999998753 467789999999999999999988 8876 89
Q ss_pred EEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCC
Q 004735 600 AGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGL 679 (732)
Q Consensus 600 a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~ 679 (732)
++++.+|..++....... ...+..++ ..+...++...+.++.+|+|+++|++|.++|+.++.++++.+++.|.
T Consensus 164 ~~v~~~p~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~~g~ 236 (283)
T 3bjr_A 164 NVVLGYPVISPLLGFPKD----DATLATWT---PTPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALATAKI 236 (283)
T ss_dssp SEEEESCCCCTTSBC------------CCC---CCGGGGCGGGSCCTTCCCEEEEEESCCTTSCTHHHHHHHHHHHHTTC
T ss_pred EEEEcCCccccccccccc----cchHHHHH---HHhHhcCHHHhccCCCCCEEEEEcCCCCCCChHHHHHHHHHHHHCCC
Confidence 999999987643211000 01111111 12345667777888899999999999999999999999999999999
Q ss_pred CEEEEEeCCCCccCCCcc------------cHHHHHHHHHHHHHHH
Q 004735 680 PVALVEYEGEQHGFRKAE------------NIKFTLEQQMVFFARV 713 (732)
Q Consensus 680 ~~~~~~~~~~gH~~~~~~------------~~~~~~~~~~~fl~~~ 713 (732)
+++++++++++|.+.... ...++.+.+++||+++
T Consensus 237 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 237 PYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp CEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 999999999999764221 2256778888888753
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=206.88 Aligned_cols=240 Identities=16% Similarity=0.184 Sum_probs=164.9
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---HHHHHHHCCCEEEEEcC--CCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNY--GGS 535 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~--rG~ 535 (732)
.+.+++.+...|..+.+.+|.|++.. .++.|+||++||+++... .+.. ..+.++++||.|+++|+ ||.
T Consensus 16 ~~~~~~~s~~~~~~~~~~v~~P~~~~-----~~~~p~vv~lHG~~~~~~--~~~~~~~~~~~~~~~g~~vv~~d~~~rG~ 88 (282)
T 3fcx_A 16 QKVFEHDSVELNCKMKFAVYLPPKAE-----TGKCPALYWLSGLTCTEQ--NFISKSGYHQSASEHGLVVIAPDTSPRGC 88 (282)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG-----TSCEEEEEEECCTTCCSH--HHHHHSCCHHHHHHHTCEEEEECSCSSCC
T ss_pred EEEEEEEchhcCCeeEEEEEcCCCCC-----CCCCCEEEEEcCCCCCcc--chhhcchHHHHhhcCCeEEEEeccccCcc
Confidence 34556665547899999999997632 457899999999865432 2222 25778889999999998 877
Q ss_pred CCCChh-----------hHHhhccCCCc--ccHHHHH-HHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceE
Q 004735 536 TGYGRE-----------FRERLLGRWGI--VDVNDCC-SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKA 600 (732)
Q Consensus 536 ~g~g~~-----------~~~~~~~~~~~--~~~~D~~-~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a 600 (732)
++.+.. +.......+.. ....++. ++++++.++..+|++||+|+|||+||++++.++. +|++|++
T Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 168 (282)
T 3fcx_A 89 NIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKS 168 (282)
T ss_dssp CC--------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSC
T ss_pred ccccccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceE
Confidence 654432 11100000000 1122233 4555665566688899999999999999999998 8999999
Q ss_pred EEeecCcCCHHHHHhhcchhhhhhhhhhcC-ChhhhhhcCccccCCC---CCCCEEEEEeCCCCccChHH--HHHHHHHH
Q 004735 601 GASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDK---FSCPIILFQGLEDKVVPPDQ--ARKIYKAL 674 (732)
Q Consensus 601 ~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~---i~~P~Lii~G~~D~~v~~~~--~~~~~~~l 674 (732)
+++.+|+.+...... ....+...++ ....+...+|...+.+ +.+|+|++||++|.+++..+ ++++.+.+
T Consensus 169 ~v~~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~~l 243 (282)
T 3fcx_A 169 VSAFAPICNPVLCPW-----GKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAAC 243 (282)
T ss_dssp EEEESCCCCGGGSHH-----HHHHHHHHHC---CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHHHHHH
T ss_pred EEEeCCccCcccCch-----hHHHHHHhcCCchhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHHHHHH
Confidence 999999987543211 1111222222 2344555566554444 47999999999999986654 56899999
Q ss_pred HhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 675 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++.|.+++++++++++|.|. .....+...++|+.++|+
T Consensus 244 ~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 244 TEKKIPVVFRLQEDYDHSYY---FIATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHTTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHcCCceEEEECCCCCcCHH---HHHhhhHHHHHHHHHhhc
Confidence 99999999999999999873 456778888999999886
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-22 Score=193.87 Aligned_cols=209 Identities=17% Similarity=0.129 Sum_probs=161.3
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
..+.+.++. +|.++.++++.|.+ +.|+||++||++.....+.+...++.|+++||.|+++|+||.+
T Consensus 11 ~~~~~~~~~--~g~~l~~~~~~p~~---------~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g--- 76 (223)
T 2o2g_A 11 QEYAVSVSV--GEVKLKGNLVIPNG---------ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLTQE--- 76 (223)
T ss_dssp CEEEEEEEE--TTEEEEEEEECCTT---------CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSCHH---
T ss_pred eeeEEEEec--CCeEEEEEEecCCC---------CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCCcC---
Confidence 356778876 79999999998854 4699999999865544444556788899999999999999643
Q ss_pred hhhHHhhcc--CCC-cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh
Q 004735 540 REFRERLLG--RWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA 615 (732)
Q Consensus 540 ~~~~~~~~~--~~~-~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~ 615 (732)
.+....... ... ....+|+.++++++..++.+|.++++++|||+||.+++.++. +|++++++++.+|..++.
T Consensus 77 ~s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~---- 152 (223)
T 2o2g_A 77 EEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA---- 152 (223)
T ss_dssp HHHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGC----
T ss_pred CCCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcC----
Confidence 332221110 011 122678899999999988889999999999999999999988 999999999999864321
Q ss_pred hcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004735 616 ETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
...+.++++|+|+++|++|..++... .+.+++.+.+++++++++++|.+..
T Consensus 153 -------------------------~~~~~~~~~P~l~i~g~~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~H~~~~ 203 (223)
T 2o2g_A 153 -------------------------PSALPHVKAPTLLIVGGYDLPVIAMN----EDALEQLQTSKRLVIIPRASHLFEE 203 (223)
T ss_dssp -------------------------TTTGGGCCSCEEEEEETTCHHHHHHH----HHHHHHCCSSEEEEEETTCCTTCCS
T ss_pred -------------------------HHHHhcCCCCEEEEEccccCCCCHHH----HHHHHhhCCCeEEEEeCCCCcccCC
Confidence 01234567999999999999886432 3445556678999999999999877
Q ss_pred cccHHHHHHHHHHHHHHHhC
Q 004735 696 AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 696 ~~~~~~~~~~~~~fl~~~l~ 715 (732)
++...+..+.+.+||+++|+
T Consensus 204 ~~~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 204 PGALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp TTHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 67778999999999999874
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=200.26 Aligned_cols=211 Identities=16% Similarity=0.204 Sum_probs=161.2
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhh
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~ 542 (732)
.+++.+. +|..++++++.|.+ ++.|+||++||+++. ...+...++.|+++||.|+++|+||.+..+...
T Consensus 5 ~~~~~~~-~g~~l~~~~~~p~~--------~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~ 73 (236)
T 1zi8_A 5 GISIQSY-DGHTFGALVGSPAK--------APAPVIVIAQDIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTAL 73 (236)
T ss_dssp TCCEECT-TSCEECEEEECCSS--------CSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBC
T ss_pred eEEEecC-CCCeEEEEEECCCC--------CCCCEEEEEcCCCCC--CHHHHHHHHHHHhCCcEEEeccccccCCCcccc
Confidence 4567776 89999999998863 457999999997433 335667888899999999999999876543210
Q ss_pred HHh-----------hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH
Q 004735 543 RER-----------LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL 610 (732)
Q Consensus 543 ~~~-----------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~ 610 (732)
... .....-....+|+.++++++.++..++ ++++++|||+||.+++.++. +| ++++++.+|....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~ 150 (236)
T 1zi8_A 74 DPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE 150 (236)
T ss_dssp CTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG
T ss_pred cccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc
Confidence 000 000001123789999999998876544 69999999999999999998 77 9999998885321
Q ss_pred HHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004735 611 SMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690 (732)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~g 690 (732)
++...+.++++|+|+++|++|.+++++...++++.+++.+ +++++++++++
T Consensus 151 ----------------------------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 201 (236)
T 1zi8_A 151 ----------------------------KQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHWYEEAG 201 (236)
T ss_dssp ----------------------------GCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEEEETTCC
T ss_pred ----------------------------cchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEEEECCCC
Confidence 1223455678999999999999999999999999998766 88999999999
Q ss_pred ccCCCc-------ccHHHHHHHHHHHHHHHhCC
Q 004735 691 HGFRKA-------ENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 691 H~~~~~-------~~~~~~~~~~~~fl~~~l~~ 716 (732)
|.+... +..++.++.+.+||+++++.
T Consensus 202 H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 202 HSFARTGSSGYVASAAALANERTLDFLVPLQSR 234 (236)
T ss_dssp TTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC-
T ss_pred cccccCCCCccCHHHHHHHHHHHHHHHHHhcCC
Confidence 987543 23467889999999999874
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=207.58 Aligned_cols=222 Identities=16% Similarity=0.123 Sum_probs=159.8
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC-CcccHHHHHHHH-CCCEEEEEcCCCCCCCChhhHHhhccCCC
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWG 551 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~d~rG~~g~g~~~~~~~~~~~~ 551 (732)
.+++++|.|.. .++.|+||++|||++.... ..+......++. .||.|+.+|||+++++...
T Consensus 66 ~i~~~~~~p~~-------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~~~---------- 128 (322)
T 3fak_A 66 GCAAEWVRAPG-------CQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHPFP---------- 128 (322)
T ss_dssp TEEEEEEECTT-------CCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSCTT----------
T ss_pred CeEEEEEeCCC-------CCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCC----------
Confidence 37888898875 4568999999998654333 233445556665 6999999999987654321
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC----cceEEEeecCcCCHHHHHhhcch-------
Q 004735 552 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD----TFKAGASLYGVADLSMLRAETHK------- 619 (732)
Q Consensus 552 ~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~----~~~a~v~~~~~~d~~~~~~~~~~------- 619 (732)
..++|+.++++|+.++ .+|++||+|+|+|+||++++.++. .++ .++++++++|+.++.........
T Consensus 129 -~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~~ 206 (322)
T 3fak_A 129 -AAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPM 206 (322)
T ss_dssp -HHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHHTTTTCCS
T ss_pred -cHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHHhCccCcc
Confidence 2378999999999998 679999999999999999998886 444 49999999999876422111000
Q ss_pred ----hhhhhhhhhcCC-hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004735 620 ----FESRYIDNLVGS-EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 694 (732)
Q Consensus 620 ----~~~~~~~~~~~~-~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 694 (732)
....+...+.+. .......+|+...-....|+||++|+.|.+ ..++..+++.|++.|++++++++++++|+|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~--~~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~ 284 (322)
T 3fak_A 207 VAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVL--LDDSIKLDAKAKADGVKSTLEIWDDMIHVWH 284 (322)
T ss_dssp CCSSHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTT--HHHHHHHHHHHHHTTCCEEEEEETTCCTTGG
T ss_pred cCHHHHHHHHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCcc--HHHHHHHHHHHHHcCCCEEEEEeCCceeehh
Confidence 011111111111 111223345533323336999999999987 5688999999999999999999999999874
Q ss_pred C----cccHHHHHHHHHHHHHHHhCC
Q 004735 695 K----AENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 695 ~----~~~~~~~~~~~~~fl~~~l~~ 716 (732)
. .+...+.++.+.+||+++|+.
T Consensus 285 ~~~~~~~~~~~~~~~i~~fl~~~l~~ 310 (322)
T 3fak_A 285 AFHPMLPEGKQAIVRVGEFMREQWAA 310 (322)
T ss_dssp GGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHhc
Confidence 2 345678899999999999973
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=187.49 Aligned_cols=201 Identities=17% Similarity=0.177 Sum_probs=154.0
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCC---CCccCCcccHHHHHHHHCCCEEEEEcCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP---TSEARGILNLSIQYWTSRGWAFVDVNYGGS 535 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~---~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~ 535 (732)
...+.+.+.+. +| +++++++.|.. .++.|+||++||++ +......+...+..|+++||.|+++|+||.
T Consensus 4 ~~~~~~~~~~~-~g-~l~~~~~~p~~-------~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~ 74 (208)
T 3trd_A 4 MTNEDFLIQGP-VG-QLEVMITRPKG-------IEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGV 74 (208)
T ss_dssp CSSSCEEEECS-SS-EEEEEEECCSS-------CCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred cccceEEEECC-Cc-eEEEEEEcCCC-------CCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCC
Confidence 34677889987 88 99999999865 34679999999953 233333456678889999999999999987
Q ss_pred CCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHh
Q 004735 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRA 615 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~ 615 (732)
+.....+ .......+|+.++++++.++ .+.++++++|||+||.+++.++.+| +++++|+.+|..+..
T Consensus 75 g~s~~~~------~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~-~v~~~v~~~~~~~~~---- 141 (208)
T 3trd_A 75 GKSQGRY------DNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVAYDQ-KVAQLISVAPPVFYE---- 141 (208)
T ss_dssp TTCCSCC------CTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHS-CCSEEEEESCCTTSG----
T ss_pred CCCCCCc------cchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHhccC-CccEEEEeccccccC----
Confidence 6543321 11223478999999999987 3458999999999999999999766 899999999876211
Q ss_pred hcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004735 616 ETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
+...+..+++|+|+++|++|.+++++..+++++.+.. +++++++++++|.+..
T Consensus 142 ------------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~H~~~~ 194 (208)
T 3trd_A 142 ------------------------GFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISS---PVEFVVMSGASHFFHG 194 (208)
T ss_dssp ------------------------GGTTCCSCCSCEEEEEETTCSSSCHHHHHHHHHHSSS---CCEEEEETTCCSSCTT
T ss_pred ------------------------CchhhhhcCCCEEEEECCCCCCCCHHHHHHHHHHccC---ceEEEEeCCCCCcccc
Confidence 0123445589999999999999999998888887654 3799999999998764
Q ss_pred cccHHHHHHHHHHHH
Q 004735 696 AENIKFTLEQQMVFF 710 (732)
Q Consensus 696 ~~~~~~~~~~~~~fl 710 (732)
. ..+..+.+.+||
T Consensus 195 ~--~~~~~~~i~~fl 207 (208)
T 3trd_A 195 R--LIELRELLVRNL 207 (208)
T ss_dssp C--HHHHHHHHHHHH
T ss_pred c--HHHHHHHHHHHh
Confidence 2 356666666665
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=209.21 Aligned_cols=219 Identities=25% Similarity=0.318 Sum_probs=168.2
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH----------HHHHHHHCCCEEEE
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL----------SIQYWTSRGWAFVD 529 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~----------~~~~l~~~G~~v~~ 529 (732)
..+.+.|.+..+|..+++++|.|.+.. +.++.|+||++||+++......... ...+....|+.|++
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~----~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~ 218 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVN----PDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLA 218 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCC----TTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEE
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCC----CCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEE
Confidence 346677776436889999999998732 3567899999999864432221111 12234467899999
Q ss_pred EcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 530 ~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
+|++|.++++..|........+..+.+|+.++++++.++..+|++||+|+|||+||++++.++. +|++|+++++++|..
T Consensus 219 pd~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~ 298 (380)
T 3doh_A 219 PQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGG 298 (380)
T ss_dssp ECCCTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCC
T ss_pred ecCCCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCC
Confidence 9999988888776653333334556899999999999998899999999999999999998888 999999999999986
Q ss_pred CHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 609 DLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 609 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
+... +..+. +|+|++||++|.++|++++.++++.|++.|.++++++|+
T Consensus 299 ~~~~-------------------------------~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 347 (380)
T 3doh_A 299 DVSK-------------------------------VERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYE 347 (380)
T ss_dssp CGGG-------------------------------GGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred Chhh-------------------------------hhhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCceEEEEec
Confidence 3211 11223 899999999999999999999999999999999999999
Q ss_pred CC---CccCCCcccHHHHHH--HHHHHHHHH
Q 004735 688 GE---QHGFRKAENIKFTLE--QQMVFFARV 713 (732)
Q Consensus 688 ~~---gH~~~~~~~~~~~~~--~~~~fl~~~ 713 (732)
++ +|+|.........+. .+++||.++
T Consensus 348 ~~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 348 KGFMEKHGWDPHGSWIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp TTHHHHTTCCTTCTHHHHHTCHHHHHHHHTC
T ss_pred CCcccCCCCCCchhHHHhcCCHHHHHHHHhh
Confidence 99 444433335556666 888998764
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-22 Score=203.14 Aligned_cols=208 Identities=19% Similarity=0.246 Sum_probs=143.9
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..+.||++||.+++ ...|..+++.|+++||.|+++|+||.+...... ....+ ...++|+.+++++|.+. .
T Consensus 50 ~~~~VlllHG~~~s--~~~~~~la~~La~~Gy~Via~Dl~GhG~S~~~~---~~~~~-~~~~~d~~~~~~~l~~~----~ 119 (281)
T 4fbl_A 50 SRIGVLVSHGFTGS--PQSMRFLAEGFARAGYTVATPRLTGHGTTPAEM---AASTA-SDWTADIVAAMRWLEER----C 119 (281)
T ss_dssp SSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTTSSSCHHHH---HTCCH-HHHHHHHHHHHHHHHHH----C
T ss_pred CCceEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEECCCCCCCCCccc---cCCCH-HHHHHHHHHHHHHHHhC----C
Confidence 34669999997433 456778899999999999999999765442221 11111 01267888889988765 3
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhh---hhhhhcCC------hhhhhhcCc---
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESR---YIDNLVGS------EKDYYEKSP--- 640 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~sp--- 640 (732)
++++|+||||||.+++.++. +|++++++|+++|...+.........+... .+.....+ .+......|
T Consensus 120 ~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (281)
T 4fbl_A 120 DVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPA 199 (281)
T ss_dssp SEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEEGGG
T ss_pred CeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCchHH
Confidence 68999999999999999998 999999999999876533211110000000 00000000 000000011
Q ss_pred -----------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 641 -----------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 641 -----------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
...+.+|++|+|+++|++|.++|++.++.+++.+.. .++++++++++||.+......+++.+.+++|
T Consensus 200 ~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~l~~--~~~~l~~~~~~gH~~~~e~~~e~v~~~i~~F 277 (281)
T 4fbl_A 200 IKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIGS--TEKELLWLENSYHVATLDNDKELILERSLAF 277 (281)
T ss_dssp HHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSCTHHHHHHHHHCCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccccccCCCEEEEEeCCCCCcCHHHHHHHHHhCCC--CCcEEEEECCCCCcCccccCHHHHHHHHHHH
Confidence 123578899999999999999999999999888753 4679999999999865555678889999999
Q ss_pred HHHH
Q 004735 710 FARV 713 (732)
Q Consensus 710 l~~~ 713 (732)
|++|
T Consensus 278 L~~H 281 (281)
T 4fbl_A 278 IRKH 281 (281)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 9875
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=197.05 Aligned_cols=233 Identities=16% Similarity=0.188 Sum_probs=164.6
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
..+.+.+.. +|.+++++++.|.+ .+.|+||++||+++......+...+..|+++||.|+++|+||.+...
T Consensus 21 ~~~~~~~~~--~g~~l~~~~~~p~~--------~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~ 90 (270)
T 3pfb_A 21 GMATITLER--DGLQLVGTREEPFG--------EIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSD 90 (270)
T ss_dssp EEEEEEEEE--TTEEEEEEEEECSS--------SSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTSS
T ss_pred cceEEEecc--CCEEEEEEEEcCCC--------CCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccCCC
Confidence 345555554 79999999998864 34799999999865543445667888899999999999999876544
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH 618 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~ 618 (732)
....... -....+|+.++++++.++.. .++++|+|||+||++++.++. +|++++++|+.+|..+.........
T Consensus 91 ~~~~~~~----~~~~~~d~~~~i~~l~~~~~--~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~ 164 (270)
T 3pfb_A 91 GKFENMT----VLNEIEDANAILNYVKTDPH--VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGN 164 (270)
T ss_dssp SCGGGCC----HHHHHHHHHHHHHHHHTCTT--EEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTE
T ss_pred CCCCccC----HHHHHHhHHHHHHHHHhCcC--CCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhh
Confidence 3211100 01236889999999988643 359999999999999999988 9999999999999876554222111
Q ss_pred hhhhhhhhhhcC-------------ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 619 KFESRYIDNLVG-------------SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 619 ~~~~~~~~~~~~-------------~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
.....+...... -...+...+....+.++++|+|+++|++|.+++++.+.++.+.++ ++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 240 (270)
T 3pfb_A 165 TQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQ----NSTLHL 240 (270)
T ss_dssp ETTEECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSCTHHHHHHHHHCS----SEEEEE
T ss_pred hhccccCcccccccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCCHHHHHHHHHhCC----CCeEEE
Confidence 000000000000 001223334455678899999999999999999999888877743 579999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
++++||.+. .+...++.+.+.+||++.
T Consensus 241 ~~~~gH~~~-~~~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 241 IEGADHCFS-DSYQKNAVNLTTDFLQNN 267 (270)
T ss_dssp ETTCCTTCC-THHHHHHHHHHHHHHC--
T ss_pred cCCCCcccC-ccchHHHHHHHHHHHhhc
Confidence 999999765 456677778888887654
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=202.57 Aligned_cols=237 Identities=21% Similarity=0.254 Sum_probs=167.6
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+.+.+++.+. +|..++++++.|.+ .++.|+||++||+++.. ...+.. ...++++||.|+++|+||.+.+.
T Consensus 55 ~~~~~~~~~~-~g~~i~~~~~~P~~-------~~~~p~vv~~HG~~~~~-~~~~~~-~~~l~~~g~~v~~~d~rg~g~s~ 124 (318)
T 1l7a_A 55 KVYRLTYKSF-GNARITGWYAVPDK-------EGPHPAIVKYHGYNASY-DGEIHE-MVNWALHGYATFGMLVRGQQRSE 124 (318)
T ss_dssp EEEEEEEEEG-GGEEEEEEEEEESS-------CSCEEEEEEECCTTCCS-GGGHHH-HHHHHHTTCEEEEECCTTTSSSC
T ss_pred EEEEEEEEcc-CCCEEEEEEEeeCC-------CCCccEEEEEcCCCCCC-CCCccc-ccchhhCCcEEEEecCCCCCCCC
Confidence 4577888887 89999999999975 45679999999986440 222333 33778899999999999987655
Q ss_pred hhhHHhhcc-----CCC---------cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEee
Q 004735 540 REFRERLLG-----RWG---------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASL 604 (732)
Q Consensus 540 ~~~~~~~~~-----~~~---------~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~ 604 (732)
......... ..+ ...++|+.++++++.++..+|.++|+++|||+||.+++.++. +|+ ++++++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~ 203 (318)
T 1l7a_A 125 DTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVAD 203 (318)
T ss_dssp CCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEE
T ss_pred CcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEec
Confidence 432100000 001 123789999999999988788899999999999999999988 775 7777888
Q ss_pred cCcC-CHHHHHhhcc--hh--hhhhhhhhcC---Ch---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHH
Q 004735 605 YGVA-DLSMLRAETH--KF--ESRYIDNLVG---SE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673 (732)
Q Consensus 605 ~~~~-d~~~~~~~~~--~~--~~~~~~~~~~---~~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (732)
+|.. ++........ .+ ...++..... .. ......++...+.++++|+|+++|++|.+++++++.++++.
T Consensus 204 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~ 283 (318)
T 1l7a_A 204 YPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNH 283 (318)
T ss_dssp SCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred CCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccCCCCCCcccHHHHHhh
Confidence 8854 4443321110 00 0011111100 00 11222346666778899999999999999999999998887
Q ss_pred HHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 674 LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 674 l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++. +++++++++++|... .+..+.+.+||.++|+
T Consensus 284 l~~---~~~~~~~~~~~H~~~-----~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 284 LET---KKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp CCS---SEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred cCC---CeeEEEccCCCCCCc-----chhHHHHHHHHHHHhC
Confidence 754 589999999999832 4678899999999986
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=202.34 Aligned_cols=235 Identities=16% Similarity=0.192 Sum_probs=168.2
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-ccCCcccHHHHHHHHC-CCEEEEEcCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGST 536 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~-~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~ 536 (732)
...+.+++.+. +| .+.+++|.|.+. .++.|+||++|||++. .....+...+..|+++ ||.|+++||||.+
T Consensus 46 ~~~~~~~i~~~-~g-~l~~~~~~P~~~------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~ 117 (310)
T 2hm7_A 46 AEVREFDMDLP-GR-TLKVRMYRPEGV------EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAP 117 (310)
T ss_dssp SEEEEEEEEET-TE-EEEEEEEECTTC------CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred ceEEEEEeccC-CC-eEEEEEEecCCC------CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCC
Confidence 45677888886 55 999999999751 3457999999997643 3344566778888875 9999999999887
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcC---CCCCCcEEEEEcChHHHHHHHHHh-CCC----cceEEEeecCcC
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA-FRD----TFKAGASLYGVA 608 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~-~p~----~~~a~v~~~~~~ 608 (732)
++... ...+|+.++++++.+.. .+|.++++|+|||+||++++.++. +++ +++++++.+|..
T Consensus 118 ~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~ 186 (310)
T 2hm7_A 118 EHKFP-----------AAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPST 186 (310)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCC
T ss_pred CCCCC-----------ccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Confidence 64322 23688999999998864 367889999999999999999887 654 699999999987
Q ss_pred CHH--H----HHhhcc------hhhhhhhhhhcCChh--hhhhcCcccc--CCCCCCCEEEEEeCCCCccChHHHHHHHH
Q 004735 609 DLS--M----LRAETH------KFESRYIDNLVGSEK--DYYEKSPINF--VDKFSCPIILFQGLEDKVVPPDQARKIYK 672 (732)
Q Consensus 609 d~~--~----~~~~~~------~~~~~~~~~~~~~~~--~~~~~sp~~~--~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (732)
+.. . +..... .....+...+..... .....+|... +..+ +|+|+++|++|.++ .++..+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~~--~~~~~~~~ 263 (310)
T 2hm7_A 187 GYDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGL-PPAYIATAQYDPLR--DVGKLYAE 263 (310)
T ss_dssp CCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTC-CCEEEEEEEECTTH--HHHHHHHH
T ss_pred CCCcccCCcchhhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCC-CCEEEEEecCCCch--HHHHHHHH
Confidence 654 1 000000 000111112222111 1112334332 2333 49999999999986 67889999
Q ss_pred HHHhCCCCEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHHhC
Q 004735 673 ALKENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 673 ~l~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 715 (732)
.+++.|++++++++++++|++.. .+...+..+.+.+||+++|+
T Consensus 264 ~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 264 ALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp HHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998743 24557888999999998874
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=201.28 Aligned_cols=236 Identities=17% Similarity=0.160 Sum_probs=167.5
Q ss_pred CcEEEEeeccCCCe-EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCc-cCCcccHHHHHHHH-CCCEEEEEcCCCCC
Q 004735 460 LPELIEFPTEVPGQ-KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTS-RGWAFVDVNYGGST 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~-~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~-~~~~~~~~~~~l~~-~G~~v~~~d~rG~~ 536 (732)
..+.+++.+. +|. .+.+.+|.|.+ ...+.|+||++||+++.. ....+......|+. .||.|+++||||.+
T Consensus 50 ~~~~~~i~~~-~g~~~l~~~~~~P~~------~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~ 122 (323)
T 1lzl_A 50 SLRELSAPGL-DGDPEVKIRFVTPDN------TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAP 122 (323)
T ss_dssp EEEEEEECCS-TTCCCEEEEEEEESS------CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred eEEEEEecCC-CCCceeEEEEEecCC------CCCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCC
Confidence 4577888887 776 79999999975 135679999999986432 23345566777776 59999999999877
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-CCC----cceEEEeecCcC
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-FRD----TFKAGASLYGVA 608 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~p~----~~~a~v~~~~~~ 608 (732)
.+... ...+|+.++++++.+. ..+|+++|+|+|||+||++++.++. +++ .++++++.+|+.
T Consensus 123 ~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~ 191 (323)
T 1lzl_A 123 ETTFP-----------GPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPEL 191 (323)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCC
T ss_pred CCCCC-----------chHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCcc
Confidence 54321 2367899999999774 3467789999999999999999887 554 499999999988
Q ss_pred CHHHHHhhcch------h----hhhhhhhhcCCh-------hhhhhcCccccCCCCC--CCEEEEEeCCCCccChHHHHH
Q 004735 609 DLSMLRAETHK------F----ESRYIDNLVGSE-------KDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQARK 669 (732)
Q Consensus 609 d~~~~~~~~~~------~----~~~~~~~~~~~~-------~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~~~~ 669 (732)
+.......... + ...+...+.+.. ......+|+.. ..+. +|+||++|++|.++ .++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~~~--~~~~~ 268 (323)
T 1lzl_A 192 DDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDPLR--DEGIE 268 (323)
T ss_dssp CTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCTTH--HHHHH
T ss_pred CCCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccC-cccCCCChhheEECCcCCch--HHHHH
Confidence 75421100000 0 011111111111 11222344432 1222 79999999999986 67889
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCc---ccHHHHHHHHHHHHHHHhCC
Q 004735 670 IYKALKENGLPVALVEYEGEQHGFRKA---ENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~fl~~~l~~ 716 (732)
+++.|++.|++++++++++++|++... +...+.++.+.+||+++++.
T Consensus 269 ~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 318 (323)
T 1lzl_A 269 YALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRS 318 (323)
T ss_dssp HHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999986422 33678899999999999974
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=198.67 Aligned_cols=243 Identities=14% Similarity=0.166 Sum_probs=169.2
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHHCCCEEEEEcCCCCCC-
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTG- 537 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rG~~g- 537 (732)
..+.+++.+...|..+.+.+|.|++.. +.++.|+||++||+++....+.. ....+.+++.|+.|+++|.++.+.
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~~----~~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~ 91 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQAS----TGAKVPVLYWLSGLTCSDENFMQKAGAQRLAAELGIAIVAPDTSPRGEG 91 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGG----TTCCEEEEEEECCTTCCSSHHHHHSCCHHHHHHHTCEEEEECSSCCSTT
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCCC----CCCCccEEEEecCCCCChhHHhhcccHHHHHhhCCeEEEEeCCcccccc
Confidence 346677766557899999999998632 25678999999998654332211 113456677899999999864321
Q ss_pred ----------CChhh-HHhhccCCC-ccc-HHHH-HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEE
Q 004735 538 ----------YGREF-RERLLGRWG-IVD-VNDC-CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGA 602 (732)
Q Consensus 538 ----------~g~~~-~~~~~~~~~-~~~-~~D~-~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v 602 (732)
.|..+ .......+. ... .+.+ .+.++++.+...+ ++|++|+|||+||++++.++. +|++|++++
T Consensus 92 ~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 170 (280)
T 3i6y_A 92 VADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVS 170 (280)
T ss_dssp CCCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEE
T ss_pred cCcccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEE
Confidence 11111 110000010 001 2222 2455566555444 589999999999999999988 999999999
Q ss_pred eecCcCCHHHHHhhcchhhhhhhhhhcC-ChhhhhhcCccccCCCCC--CCEEEEEeCCCCccChHH-HHHHHHHHHhCC
Q 004735 603 SLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQ-ARKIYKALKENG 678 (732)
Q Consensus 603 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g 678 (732)
+.+|..++.... +....+...++ +...+...+|...+.+++ +|+|++||++|.+++.+. ++++.+.|++.|
T Consensus 171 ~~s~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l~~~g 245 (280)
T 3i6y_A 171 AFSPINNPVNCP-----WGQKAFTAYLGKDTDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAASSNN 245 (280)
T ss_dssp EESCCCCGGGSH-----HHHHHHHHHHCSCGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHHHHHTT
T ss_pred EeCCccccccCc-----hHHHHHHHhcCCchHHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHHHHHcC
Confidence 999988765321 11122222332 455667777777666665 899999999999988755 889999999999
Q ss_pred CCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 679 LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 679 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++++++++++++|.+ ..+...++..++|+.++|+
T Consensus 246 ~~~~~~~~~g~~H~~---~~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 246 YPLELRSHEGYDHSY---YFIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp CCEEEEEETTCCSSH---HHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEeCCCCccH---HHHHHhHHHHHHHHHhhcc
Confidence 999999999999986 3456788899999999986
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=203.88 Aligned_cols=234 Identities=17% Similarity=0.115 Sum_probs=167.2
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc-CCcccHHHHHHH-HCCCEEEEEcCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWT-SRGWAFVDVNYGGST 536 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~-~~~~~~~~~~l~-~~G~~v~~~d~rG~~ 536 (732)
...+.+++++. +|..+.+++|.|.. ++.|+||++|||++... ...+......|+ ..||.|+++|||+++
T Consensus 58 ~~~~~~~i~~~-~G~~i~~~~~~P~~--------~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p 128 (317)
T 3qh4_A 58 VAVADDVVTGE-AGRPVPVRIYRAAP--------TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAP 128 (317)
T ss_dssp CEEEEEEEECT-TSCEEEEEEEECSC--------SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred ceEEEEEecCC-CCCeEEEEEEecCC--------CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCC
Confidence 34577889887 88899999999964 45799999999865433 233555666676 559999999999877
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-CCC----cceEEEeecCcC
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-FRD----TFKAGASLYGVA 608 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~p~----~~~a~v~~~~~~ 608 (732)
++... ..++|+.++++|+.++ ..+|++||+|+|+|+||++++.++. +++ .+++.++++|+.
T Consensus 129 ~~~~p-----------~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~ 197 (317)
T 3qh4_A 129 EHPYP-----------AALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVL 197 (317)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCC
T ss_pred CCCCc-----------hHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECcee
Confidence 64321 2378999999999885 5678899999999999999998886 443 599999999998
Q ss_pred CHHHHHh-----hcchh----hhhhhhhhcCChhhhhhcCccccCCCCC--CCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 609 DLSMLRA-----ETHKF----ESRYIDNLVGSEKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 609 d~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
+...... ....+ ...+...+++........+|... ..++ +|+||++|+.|.+++ ++..+.+.|++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~l~~lpP~li~~G~~D~~~~--~~~~~a~~l~~~ 274 (317)
T 3qh4_A 198 DDRPTASRSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRR-GQLAGLPATLITCGEIDPFRD--EVLDYAQRLLGA 274 (317)
T ss_dssp CSSCCHHHHHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGGC-SCCTTCCCEEEEEEEESTTHH--HHHHHHHHHHHT
T ss_pred cCCCCcCHHHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCcc-cccCCCCceeEEecCcCCCch--hHHHHHHHHHHc
Confidence 7641100 00000 01111111111111111233222 1222 599999999998864 788999999999
Q ss_pred CCCEEEEEeCCCCccCC----CcccHHHHHHHHHHHHHHHhC
Q 004735 678 GLPVALVEYEGEQHGFR----KAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 678 g~~~~~~~~~~~gH~~~----~~~~~~~~~~~~~~fl~~~l~ 715 (732)
|++++++++++++|+|. ..+...+.++.+.+||+++|+
T Consensus 275 g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 275 GVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp TCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 99999999999999863 235668899999999999885
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=195.66 Aligned_cols=233 Identities=17% Similarity=0.188 Sum_probs=167.2
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-ccCCcccHHHHHHHHC-CCEEEEEcCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGST 536 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~-~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~ 536 (732)
...+.+++++. +| .+.+.+|.|.+ .++.|+||++|||++. .....+......|+.. ||.|+++||||.+
T Consensus 63 ~~~~~~~i~~~-~~-~i~~~iy~P~~-------~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~ 133 (323)
T 3ain_A 63 GKIEDITIPGS-ET-NIKARVYYPKT-------QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAP 133 (323)
T ss_dssp SEEEEEEEECS-SS-EEEEEEEECSS-------CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred cEEEEEEecCC-CC-eEEEEEEecCC-------CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCC
Confidence 35677888876 55 89999999975 3567999999998643 3334566677888764 9999999999877
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcC---CCCCCcEEEEEcChHHHHHHHHHh-CCCcc---eEEEeecCcCC
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA-FRDTF---KAGASLYGVAD 609 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~---~a~v~~~~~~d 609 (732)
.+... ..++|+.++++|+.+.. . |.++|+|+|+|+||++++.++. ++++. +++++++|+.+
T Consensus 134 ~~~~p-----------~~~~d~~~~~~~l~~~~~~lg-d~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~ 201 (323)
T 3ain_A 134 ENKFP-----------AAVVDSFDALKWVYNNSEKFN-GKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVS 201 (323)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTGGGGT-CTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCS
T ss_pred CCCCc-----------chHHHHHHHHHHHHHhHHHhC-CCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEecccc
Confidence 54221 23689999999998763 2 7889999999999999999987 66665 89999999876
Q ss_pred HHHHHhhc----------chhhhhhhhhhcCChh--hhhhcCcccc-CCCCCCCEEEEEeCCCCccChHHHHHHHHHHHh
Q 004735 610 LSMLRAET----------HKFESRYIDNLVGSEK--DYYEKSPINF-VDKFSCPIILFQGLEDKVVPPDQARKIYKALKE 676 (732)
Q Consensus 610 ~~~~~~~~----------~~~~~~~~~~~~~~~~--~~~~~sp~~~-~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~ 676 (732)
........ ......+...+.+... .....+|+.. +..+ +|+||++|++|.++ .++..+++.+++
T Consensus 202 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~l-~P~lii~G~~D~l~--~~~~~~a~~l~~ 278 (323)
T 3ain_A 202 FDLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILADLNDL-PPALIITAEHDPLR--DQGEAYANKLLQ 278 (323)
T ss_dssp CCSCCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGSCCTTC-CCEEEEEETTCTTH--HHHHHHHHHHHH
T ss_pred CCCCCccHHHhccCCCCCHHHHHHHHHHhCCCCcccCCcccCcccCcccCC-CHHHEEECCCCccH--HHHHHHHHHHHH
Confidence 43110000 0001111222222111 1112344433 2222 49999999999986 578899999999
Q ss_pred CCCCEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHHhC
Q 004735 677 NGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 677 ~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 715 (732)
.|++++++++++++|++.. .+...+.++.+.+||++.++
T Consensus 279 ag~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 321 (323)
T 3ain_A 279 SGVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFY 321 (323)
T ss_dssp TTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998753 24567889999999999885
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=185.52 Aligned_cols=206 Identities=17% Similarity=0.140 Sum_probs=159.4
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCC--CCCCEEEEEcCCCCC---ccCCcccHHHHHHHHCCCEEEEEcCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPE--EKPPLLVKSHGGPTS---EARGILNLSIQYWTSRGWAFVDVNYG 533 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~--~~~P~vl~~HGg~~~---~~~~~~~~~~~~l~~~G~~v~~~d~r 533 (732)
...+.+++.+. +| .+.++++.|.+ . ++.|+||++||++.. .....+...++.|+++||.|+++|+|
T Consensus 8 ~~~~~~~~~~~-~g-~~~~~~~~p~~-------~~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 78 (220)
T 2fuk_A 8 TESAALTLDGP-VG-PLDVAVDLPEP-------DVAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFR 78 (220)
T ss_dssp SSCEEEEEEET-TE-EEEEEEECCCT-------TSCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCT
T ss_pred ccceEEEEeCC-CC-eEEEEEEeCCC-------CCccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecC
Confidence 34678899987 67 89999999976 3 458999999996432 22233456788899999999999999
Q ss_pred CCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHH
Q 004735 534 GSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML 613 (732)
Q Consensus 534 G~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~ 613 (732)
|.+...... .......+|+.++++++.++. +.++++++|||+||.+++.++... +++++|+.+|..+...
T Consensus 79 g~g~s~~~~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~-~v~~~v~~~~~~~~~~- 148 (220)
T 2fuk_A 79 SVGTSAGSF------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL-EPQVLISIAPPAGRWD- 148 (220)
T ss_dssp TSTTCCSCC------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH-CCSEEEEESCCBTTBC-
T ss_pred CCCCCCCCc------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc-cccEEEEecccccchh-
Confidence 876543321 122345899999999999874 567999999999999999999833 8999999999865321
Q ss_pred HhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 614 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
+ ..+. ..+|+|+++|++|.+++++.+.++++.++ .+++++++++++|.+
T Consensus 149 ---------------------~------~~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~H~~ 197 (220)
T 2fuk_A 149 ---------------------F------SDVQ-PPAQWLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMPDTSHFF 197 (220)
T ss_dssp ---------------------C------TTCC-CCSSEEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEETTCCTTC
T ss_pred ---------------------h------hhcc-cCCcEEEEECCCCcccCHHHHHHHHHHhC---cCCcEEEeCCCCcee
Confidence 0 0111 25789999999999999999888887764 367999999999987
Q ss_pred CCcccHHHHHHHHHHHHHHHhCC
Q 004735 694 RKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 694 ~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
.. ...+..+.+.+|+.++++.
T Consensus 198 ~~--~~~~~~~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 198 HR--KLIDLRGALQHGVRRWLPA 218 (220)
T ss_dssp TT--CHHHHHHHHHHHHGGGCSS
T ss_pred hh--hHHHHHHHHHHHHHHHhhc
Confidence 65 3567889999999999873
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=203.06 Aligned_cols=233 Identities=20% Similarity=0.230 Sum_probs=167.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
..+.+.+.+. +|.+++++++.|.+ .++.|+||++||+++.... +.... .++++||.|+++|+||.++++
T Consensus 81 ~~~~~~~~~~-~g~~l~~~~~~P~~-------~~~~p~vv~~HG~g~~~~~--~~~~~-~~~~~G~~v~~~D~rG~g~s~ 149 (346)
T 3fcy_A 81 ECYDLYFTGV-RGARIHAKYIKPKT-------EGKHPALIRFHGYSSNSGD--WNDKL-NYVAAGFTVVAMDVRGQGGQS 149 (346)
T ss_dssp EEEEEEEECG-GGCEEEEEEEEESC-------SSCEEEEEEECCTTCCSCC--SGGGH-HHHTTTCEEEEECCTTSSSSC
T ss_pred EEEEEEEEcC-CCCEEEEEEEecCC-------CCCcCEEEEECCCCCCCCC--hhhhh-HHHhCCcEEEEEcCCCCCCCC
Confidence 4577889887 89999999999975 4567999999998655433 33333 567899999999999987654
Q ss_pred hhhHHhhc----c--CCCc----------ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEE
Q 004735 540 REFRERLL----G--RWGI----------VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGA 602 (732)
Q Consensus 540 ~~~~~~~~----~--~~~~----------~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v 602 (732)
........ + ..+. ..++|+.++++++.....+|.++|+++|||+||++++.++. +|+ +++++
T Consensus 150 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~v 228 (346)
T 3fcy_A 150 QDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVV 228 (346)
T ss_dssp CCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEE
T ss_pred CCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEE
Confidence 43211000 0 0010 12689999999999988888899999999999999999998 887 99999
Q ss_pred eecCcCC-HHHHHhhc-ch----hhhhhhhhh---cCC----hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHH
Q 004735 603 SLYGVAD-LSMLRAET-HK----FESRYIDNL---VGS----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARK 669 (732)
Q Consensus 603 ~~~~~~d-~~~~~~~~-~~----~~~~~~~~~---~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~ 669 (732)
+.+|... +....... .. ....++... ... ...+...++...+.++++|+|+++|++|.++++..+.+
T Consensus 229 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G~~D~~~~~~~~~~ 308 (346)
T 3fcy_A 229 SEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTVFA 308 (346)
T ss_dssp EESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEETTCSSSCHHHHHH
T ss_pred ECCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEeeCCCCcCCHHHHHH
Confidence 9999753 33322211 00 001111111 001 12233445566778899999999999999999998888
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 670 IYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+++.+.. +++++++++++|.+. .+..+.+.+||++
T Consensus 309 ~~~~~~~---~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~ 343 (346)
T 3fcy_A 309 AYNNIQS---KKDIKVYPDYGHEPM-----RGFGDLAMQFMLE 343 (346)
T ss_dssp HHTTCCS---SEEEEEETTCCSSCC-----TTHHHHHHHHHHT
T ss_pred HHHhcCC---CcEEEEeCCCCCcCH-----HHHHHHHHHHHHH
Confidence 8877653 789999999999875 3567788889876
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=203.14 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=161.1
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCC----------CCCCCCCCCEEEEEcCCCCCccCCc---ccHHHHHHH-HCCCE
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIY----------QASPEEKPPLLVKSHGGPTSEARGI---LNLSIQYWT-SRGWA 526 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~----------~~~~~~~~P~vl~~HGg~~~~~~~~---~~~~~~~l~-~~G~~ 526 (732)
.+.+.+.. +..+.+.+|.|+.... .....++.|+||++|||++...... +...+..|+ +.||.
T Consensus 72 ~~dv~~~~---~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~g~~ 148 (351)
T 2zsh_A 72 SFDVLIDR---RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCV 148 (351)
T ss_dssp EEEEEEET---TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSE
T ss_pred EEEEEecC---CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHcCCE
Confidence 34455544 4456777888875210 0001356799999999865433322 556778888 78999
Q ss_pred EEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcC----CCCCC-cEEEEEcChHHHHHHHHHh-CCC---c
Q 004735 527 FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG----KADEK-RLCITGGSAGGYTTLAALA-FRD---T 597 (732)
Q Consensus 527 v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d~~-ri~i~G~S~GG~~a~~~~~-~p~---~ 597 (732)
|+++||||.+.+... ..++|+.++++++.++. .+|.+ +|+|+|||+||++++.++. +++ +
T Consensus 149 vv~~d~rg~~~~~~~-----------~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~~~ 217 (351)
T 2zsh_A 149 VVSVNYRRAPENPYP-----------CAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID 217 (351)
T ss_dssp EEEECCCCTTTSCTT-----------HHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTTCC
T ss_pred EEEecCCCCCCCCCc-----------hhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccCCC
Confidence 999999997654321 23789999999998763 57889 9999999999999999987 777 8
Q ss_pred ceEEEeecCcCCHHHHHhh-----cch-----hhhhhhhhhcC--ChhhhhhcCcc----ccCCCCCC-CEEEEEeCCCC
Q 004735 598 FKAGASLYGVADLSMLRAE-----THK-----FESRYIDNLVG--SEKDYYEKSPI----NFVDKFSC-PIILFQGLEDK 660 (732)
Q Consensus 598 ~~a~v~~~~~~d~~~~~~~-----~~~-----~~~~~~~~~~~--~~~~~~~~sp~----~~~~~i~~-P~Lii~G~~D~ 660 (732)
++++|+.+|+.+....... ... ....++..+.. ........+|+ ..+.++.+ |+|+++|++|.
T Consensus 218 v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~pP~Lii~G~~D~ 297 (351)
T 2zsh_A 218 VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDL 297 (351)
T ss_dssp CCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTTCCCCEEEEEEETTST
T ss_pred eeEEEEECCccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhhCCCCCEEEEEcCCCc
Confidence 9999999998763211000 000 00011111110 00111112222 23455565 99999999999
Q ss_pred ccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC---cccHHHHHHHHHHHHHH
Q 004735 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK---AENIKFTLEQQMVFFAR 712 (732)
Q Consensus 661 ~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~fl~~ 712 (732)
+++ ++..+++.+++.|.+++++++++++|.+.. .+...+.++.+.+||++
T Consensus 298 ~~~--~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 298 IRD--WQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp THH--HHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred chH--HHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 875 678899999999999999999999998754 35677888899999864
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=203.06 Aligned_cols=305 Identities=12% Similarity=0.099 Sum_probs=199.8
Q ss_pred ceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEEe
Q 004735 93 GTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (732)
Q Consensus 93 ~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d 171 (732)
.++|+| |+.++|...+ ++...||.++..+| +.+.++...... .....|++++..|+|... +..||++|
T Consensus 40 ~~~~SpDg~~l~~~~~~---~g~~~l~~~d~~~g-~~~~lt~~~~~~------~~~~~~spdg~~l~~~~~-~~~l~~~d 108 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAF---DGPWNYYLLDLNTQ-VATQLTEGRGDN------TFGGFLSPDDDALFYVKD-GRNLMRVD 108 (388)
T ss_dssp SCCBCTTSCEEEEEECT---TSSCEEEEEETTTC-EEEECCCSSCBC------SSSCEECTTSSEEEEEET-TTEEEEEE
T ss_pred CccCCCCCCEEEEEEcC---CCCceEEEEeCCCC-ceEEeeeCCCCC------ccceEEcCCCCEEEEEeC-CCeEEEEE
Confidence 489999 9999998753 35567888877654 556665432110 002345556668888874 45899999
Q ss_pred CCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCC-------------CCCceeEEEEEEcCCCCccccEE
Q 004735 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------------ALNSTTEIVAIALNGQNIQEPKV 238 (732)
Q Consensus 172 ~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~-------------~~~~~~~l~~~d~~~~~~~~~~~ 238 (732)
+++ ++.+++...+.. ........++|||+.++++....... .......|+++|+++++ .++
T Consensus 109 ~~~--g~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~ 182 (388)
T 3pe7_A 109 LAT--LEENVVYQVPAE-WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---STV 182 (388)
T ss_dssp TTT--CCEEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---EEE
T ss_pred CCC--Ccceeeeechhh-cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---eEE
Confidence 998 777766644211 11223334699999988765432210 00123799999999998 888
Q ss_pred cccCCCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEE
Q 004735 239 LVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 316 (732)
Q Consensus 239 lt~~~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~ 316 (732)
++........+.||| ||++|+|....... ....+||++|++ +++. +.+...... ..+..+.|||||+ |+|
T Consensus 183 l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~--~~~~~l~~~d~~-~~~~---~~l~~~~~~--~~~~~~~~spdg~~l~~ 254 (388)
T 3pe7_A 183 ILQENQWLGHPIYRPYDDSTVAFCHEGPHD--LVDARMWLINED-GTNM---RKVKTHAEG--ESCTHEFWVPDGSALVY 254 (388)
T ss_dssp EEEESSCEEEEEEETTEEEEEEEEECSCTT--TSSCSEEEEETT-SCCC---EESCCCCTT--EEEEEEEECTTSSCEEE
T ss_pred eecCCccccccEECCCCCCEEEEEEecCCC--CCcceEEEEeCC-CCce---EEeeeCCCC--cccccceECCCCCEEEE
Confidence 887777778899999 99999999842211 024579999987 5554 223322100 2355789999999 988
Q ss_pred EEeccCCee--eEEEEeccCCeEEEeccccc------ccCCCceeecccceeeeeecCCCCEEEEEEEE------CCEEE
Q 004735 317 VTDRKNGFW--NLHKWIESNNEVLAIYSLDA------EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ------NGRSY 382 (732)
Q Consensus 317 ~~~~~~g~~--~l~~~d~~~g~~~~l~~~~~------~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~------~g~~~ 382 (732)
.+.. .+.. .|+++|+++++.+.++.... ......|++ +++.|++...+ .+...
T Consensus 255 ~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp------------dg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 255 VSYL-KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG------------DGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp EEEE-TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE------------EECCC------------CCCCE
T ss_pred EecC-CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc------------CCCcceeEeeeccccccCCCCE
Confidence 8876 5544 49999999999888764332 012234544 78888877643 56678
Q ss_pred EEEEECCCCceEEeccCCC-----------ceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 383 LGILDDFGHSLSLLDIPFT-----------DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 383 ly~~~~~~~~~~~lt~~~~-----------~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
||++++++++.++|+.... .+..+ ..++++.+++.+...+..+||++++..+.
T Consensus 322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 322 LYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPESV 386 (388)
T ss_dssp EEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred EEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChhc
Confidence 9999999999999987654 23333 34455555666666778889999987654
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=196.24 Aligned_cols=243 Identities=13% Similarity=0.151 Sum_probs=167.3
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEcCCCCC--
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGST-- 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~rG~~-- 536 (732)
..+.+++.+...|.++.+.+|.|++.. +.++.|+||++||+++....+. .....+.+.+.|+.|+++|.++.+
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~----~~~~~P~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~ 89 (280)
T 3ls2_A 14 WHKQYTHSAVSTHCTMRFAVFLPPGAS----ESNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDN 89 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCB----TTBCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTT
T ss_pred eEEEEEEechhcCCceEEEEEcCCCCC----CCCCcCEEEEeCCCCCChhhhhcchhHHHHHhhCCeEEEEeCCcccccc
Confidence 345677776547899999999998732 2567899999999855432211 111355677789999999965322
Q ss_pred ---------CCChhhH-HhhccCC-Cccc-HHHH-HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEE
Q 004735 537 ---------GYGREFR-ERLLGRW-GIVD-VNDC-CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGA 602 (732)
Q Consensus 537 ---------g~g~~~~-~~~~~~~-~~~~-~~D~-~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v 602 (732)
|.|..+. ......+ +... .+.+ .+.+.++.+...+ .++++|+|||+||++++.++. +|++|++++
T Consensus 90 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~ 168 (280)
T 3ls2_A 90 VPNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPV-TSTKAISGHSMGGHGALMIALKNPQDYVSAS 168 (280)
T ss_dssp SCCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEBTHHHHHHHHHHHHSTTTCSCEE
T ss_pred cccccccccccCCccccccccccccccccHHHHHHHHHHHHHHhhCCC-CCCeEEEEECHHHHHHHHHHHhCchhheEEE
Confidence 1112111 1100001 0011 1222 2344555555443 489999999999999999988 999999999
Q ss_pred eecCcCCHHHHHhhcchhhhhhhhhhcC-ChhhhhhcCccccCCCCC----CCEEEEEeCCCCccChHH-HHHHHHHHHh
Q 004735 603 SLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS----CPIILFQGLEDKVVPPDQ-ARKIYKALKE 676 (732)
Q Consensus 603 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~----~P~Lii~G~~D~~v~~~~-~~~~~~~l~~ 676 (732)
+++|..++..... ....+...++ +...+...+|...+.+++ +|+|++||++|.+++.+. ++++++.|++
T Consensus 169 ~~s~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 243 (280)
T 3ls2_A 169 AFSPIVNPINCPW-----GVKAFTGYLGADKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVAKQ 243 (280)
T ss_dssp EESCCSCGGGSHH-----HHHHHHHHHCSCGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHHHH
T ss_pred EecCccCcccCcc-----hhhHHHhhcCchHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHHHHH
Confidence 9999887653211 1112222233 345666777777766664 599999999999998754 7899999999
Q ss_pred CCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 677 NGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 677 ~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.|++++++++++++|.|. .+...+...++|+.++|+
T Consensus 244 ~g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 244 KDYPLTLEMQTGYDHSYF---FISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred hCCCceEEEeCCCCCchh---hHHHHHHHHHHHHHHHhc
Confidence 999999999999999863 456778889999999886
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=197.61 Aligned_cols=240 Identities=14% Similarity=0.158 Sum_probs=167.3
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---HHHHHHHCCCEEEEEcCCCCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~rG~~g 537 (732)
.+.+++.+...|..+.+.+|.|++.. .++.|+||++||+++... .+.. ..+.+...||.|+++|+||.+.
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~-----~~~~p~vv~lHG~~~~~~--~~~~~~~~~~~~~~~g~~vv~~d~~g~G~ 87 (278)
T 3e4d_A 15 QGVFSHQSETLKSEMTFAVYVPPKAI-----HEPCPVVWYLSGLTCTHA--NVMEKGEYRRMASELGLVVVCPDTSPRGN 87 (278)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG-----TSCEEEEEEECCTTCCSH--HHHHHSCCHHHHHHHTCEEEECCSSCCST
T ss_pred EEEEEEeccccCCcceEEEEcCCCCC-----CCCCCEEEEEcCCCCCcc--chhhcccHHHHHhhCCeEEEecCCcccCc
Confidence 45667765547899999999997621 456899999999854432 2222 3455666799999999986543
Q ss_pred CChh----h---------HHhhccCC-CcccHH-HH-HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceE
Q 004735 538 YGRE----F---------RERLLGRW-GIVDVN-DC-CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKA 600 (732)
Q Consensus 538 ~g~~----~---------~~~~~~~~-~~~~~~-D~-~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a 600 (732)
.... | .......+ +..... .+ .++++++.+...+|+++++|+|||+||++++.++. +|+++++
T Consensus 88 s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 167 (278)
T 3e4d_A 88 DVPDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKS 167 (278)
T ss_dssp TSCCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSC
T ss_pred ccccccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccce
Confidence 2111 1 00000000 011122 22 24667777666678899999999999999999988 9999999
Q ss_pred EEeecCcCCHHHHHhhcchhhhhhhhhhcC-ChhhhhhcCccccCCCCC--CCEEEEEeCCCCccChHH-HHHHHHHHHh
Q 004735 601 GASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQ-ARKIYKALKE 676 (732)
Q Consensus 601 ~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~-~~~~~~~l~~ 676 (732)
+++.+|..++.... +....+...++ +...+...+|...+.+++ +|+|++||++|.+++... +..+.+.+++
T Consensus 168 ~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 242 (278)
T 3e4d_A 168 CSAFAPIVAPSSAD-----WSEPALEKYLGADRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEEAIKG 242 (278)
T ss_dssp EEEESCCSCGGGCT-----TTHHHHHHHHCSCGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTT
T ss_pred EEEeCCcccccCCc-----cchhhHHHhcCCcHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHHHHHH
Confidence 99999988754321 11112222232 345566667766655544 599999999999987532 6889999999
Q ss_pred CCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 677 NGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 677 ~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.|.+++++++++++|.+. .....++..++|+.++|+
T Consensus 243 ~g~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 243 TDIGLTLRMHDRYDHSYY---FISTFMDDHLKWHAERLG 278 (278)
T ss_dssp SSCEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred cCCCceEEEeCCCCcCHH---HHHHHHHHHHHHHHHhcC
Confidence 999999999999999863 456778889999998874
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-22 Score=204.30 Aligned_cols=197 Identities=19% Similarity=0.199 Sum_probs=151.5
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCc-cCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcc
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 553 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~-~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~ 553 (732)
+...+|.|.. ..++.|+||++|||++.. ....+...++.|+++||.|+++||||+++.... .
T Consensus 68 ~~~~~~~p~~------~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~~~-----------~ 130 (303)
T 4e15_A 68 QLVDVFYSEK------TTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVTLE-----------Q 130 (303)
T ss_dssp CEEEEEECTT------CCTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSCHH-----------H
T ss_pred cEEEEEecCC------CCCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCChh-----------H
Confidence 3455667754 245689999999986543 333455678889999999999999988764322 2
Q ss_pred cHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh-CC-------CcceEEEeecCcCCHHHHHhhcchhhhhh
Q 004735 554 DVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FR-------DTFKAGASLYGVADLSMLRAETHKFESRY 624 (732)
Q Consensus 554 ~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~p-------~~~~a~v~~~~~~d~~~~~~~~~~~~~~~ 624 (732)
..+|+.++++++.+. ...+.++|+|+|||+||++++.++. .. ++++++|+++|+.++..+..... .+
T Consensus 131 ~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~~~~----~~ 206 (303)
T 4e15_A 131 LMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLES----VN 206 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHTCTT----TS
T ss_pred HHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhcccc----cc
Confidence 368899999999762 2245789999999999999999887 32 37999999999999876543111 12
Q ss_pred hhhhcC-ChhhhhhcCcc-ccCCCC----CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 625 IDNLVG-SEKDYYEKSPI-NFVDKF----SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 625 ~~~~~~-~~~~~~~~sp~-~~~~~i----~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
....++ +.+.+...+|+ ..+..+ .+|+|++||++|.++++.++.++++++++.|.+++++++++++|.
T Consensus 207 ~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~g~~H~ 280 (303)
T 4e15_A 207 PKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHF 280 (303)
T ss_dssp GGGTTCCCTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETT
T ss_pred hhhhhcCCHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCCceEEEEeCCCCch
Confidence 222222 45666777887 667766 899999999999999999999999999999999999999999994
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=194.68 Aligned_cols=235 Identities=17% Similarity=0.208 Sum_probs=166.2
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-ccCCcccHHHHHHHHC-CCEEEEEcCCCC
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSR-GWAFVDVNYGGS 535 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~-~~~~~~~~~~~~l~~~-G~~v~~~d~rG~ 535 (732)
....+.+++++. +| .+.+.+|.|.. ..+.|+||++||+++. .....+......|+.+ ||.|+++||||.
T Consensus 45 ~~~~~~~~i~~~-~g-~i~~~~~~p~~-------~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~ 115 (311)
T 2c7b_A 45 IAETRDVHIPVS-GG-SIRARVYFPKK-------AAGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLA 115 (311)
T ss_dssp CSEEEEEEEEET-TE-EEEEEEEESSS-------CSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCT
T ss_pred cceEEEEEecCC-CC-cEEEEEEecCC-------CCCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCC
Confidence 345678888886 55 89999999975 3456999999998632 2334566677788876 999999999987
Q ss_pred CCCChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-CCC----cceEEEeecCc
Q 004735 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-FRD----TFKAGASLYGV 607 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~p~----~~~a~v~~~~~ 607 (732)
+.+... ...+|+.++++++.+. ..+|+++++|+|||+||++++.++. +++ +++++++.+|.
T Consensus 116 g~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~ 184 (311)
T 2c7b_A 116 PEYKFP-----------TAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPV 184 (311)
T ss_dssp TTSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCC
T ss_pred CCCCCC-----------ccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCc
Confidence 764321 2367889999998775 2467789999999999999999887 554 59999999998
Q ss_pred CCH----HHHHhhcch---------hhhhhhhhhcCCh--hhhhhcCcccc-CCCCCCCEEEEEeCCCCccChHHHHHHH
Q 004735 608 ADL----SMLRAETHK---------FESRYIDNLVGSE--KDYYEKSPINF-VDKFSCPIILFQGLEDKVVPPDQARKIY 671 (732)
Q Consensus 608 ~d~----~~~~~~~~~---------~~~~~~~~~~~~~--~~~~~~sp~~~-~~~i~~P~Lii~G~~D~~v~~~~~~~~~ 671 (732)
.++ ......... ....+...+.+.. ......+|+.. +..+ +|+|+++|++|.+++ +...+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~~--~~~~~~ 261 (311)
T 2c7b_A 185 VNMTGVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEEAYDFKASPLLADLGGL-PPALVVTAEYDPLRD--EGELYA 261 (311)
T ss_dssp CCCSSCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTGGGSTTTCGGGSCCTTC-CCEEEEEETTCTTHH--HHHHHH
T ss_pred cCCccccccCCccHHHhccCCCCHHHHHHHHHHhCCCCccccCcccCcccccccCC-CcceEEEcCCCCchH--HHHHHH
Confidence 872 111100000 0011111222211 11122344332 2333 399999999999874 567788
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHHhC
Q 004735 672 KALKENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 672 ~~l~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l~ 715 (732)
+.++..+.+++++++++++|++.. .+...+.++.+.+||+++++
T Consensus 262 ~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 262 YKMKASGSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp HHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999998752 34567889999999999886
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-20 Score=185.75 Aligned_cols=226 Identities=13% Similarity=0.163 Sum_probs=158.3
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc-CCccc-HHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILN-LSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~-~~~~~-~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
....+.+. +|..+++.++.|.. .++.|+||++||+++... ...+. ...+.+++. |.|+++|+||++...
T Consensus 4 ~~~~~~~~-dg~~l~~~~~~p~~-------~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~ 74 (275)
T 3h04_A 4 IKYKVITK-DAFALPYTIIKAKN-------QPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVS 74 (275)
T ss_dssp EEEEEECT-TSCEEEEEEECCSS-------SSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSC
T ss_pred eEEEEecC-CcEEEEEEEEccCC-------CCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCccc
Confidence 45677777 89999999999875 456799999999863222 22333 567777776 999999999876432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHH-hhcc
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLR-AETH 618 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~-~~~~ 618 (732)
.. ...+|+.++++++.++ .+.++++|+|||+||++++.++.. ++++++|+.+|..++.... ....
T Consensus 75 ~~-----------~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~-~~v~~~v~~~~~~~~~~~~~~~~~ 140 (275)
T 3h04_A 75 LD-----------CIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD-RDIDGVIDFYGYSRINTEPFKTTN 140 (275)
T ss_dssp HH-----------HHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH-SCCSEEEEESCCSCSCSHHHHSCC
T ss_pred cc-----------hhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc-CCccEEEecccccccccccccccc
Confidence 21 2378999999999987 567899999999999999999888 8899999999988652211 1100
Q ss_pred hh--------hhhhhhhhcC-------------------------------ChhhhhhcC-ccccCCCCCCCEEEEEeCC
Q 004735 619 KF--------ESRYIDNLVG-------------------------------SEKDYYEKS-PINFVDKFSCPIILFQGLE 658 (732)
Q Consensus 619 ~~--------~~~~~~~~~~-------------------------------~~~~~~~~s-p~~~~~~i~~P~Lii~G~~ 658 (732)
.+ .......+.. ....+.... ....+.+++ |+|+++|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~lii~G~~ 219 (275)
T 3h04_A 141 SYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PVFIAHCNG 219 (275)
T ss_dssp HHHHHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CEEEEEETT
T ss_pred chhhcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CEEEEecCC
Confidence 00 0000000000 000000000 011135666 999999999
Q ss_pred CCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHHhC
Q 004735 659 DKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI--KFTLEQQMVFFARVVG 715 (732)
Q Consensus 659 D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~--~~~~~~~~~fl~~~l~ 715 (732)
|.++|++++.++++.++ +.+++++++++|.+...... .++++.+++||++++.
T Consensus 220 D~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 220 DYDVPVEESEHIMNHVP----HSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp CSSSCTHHHHHHHTTCS----SEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCChHHHHHHHHhcC----CceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 99999988888776553 56899999999987655443 7899999999999874
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-20 Score=199.09 Aligned_cols=245 Identities=14% Similarity=0.128 Sum_probs=184.2
Q ss_pred CCEEEEEeCC--C---CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 154 GDTVIFSNYK--D---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 154 ~~~i~f~~~~--~---~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
+.+++|.... + +.|+++|+++ +..+.|+.. ......++|||||++|+++..+.+ ...|+++|+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l~~~----~~~v~~~~~Spdg~~la~~s~~~~------~~~i~~~d~ 210 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESG------RSALVIQTL 210 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEE----SSCEEEEEECTTSSEEEEEECTTS------SCEEEEEET
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC--CCCEEEeCC----CCcceeeEEcCCCCEEEEEEecCC------CcEEEEEEC
Confidence 4577777654 2 5899999987 777888754 334677899999999998876432 258999999
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
.+++ .+++.........++|||||++|+|..... ...+||++|+. +++. ..+.... ..+..+.|
T Consensus 211 ~tg~---~~~l~~~~~~~~~~~~spdg~~la~~~~~~-----g~~~i~~~d~~-~~~~---~~l~~~~----~~~~~~~~ 274 (415)
T 2hqs_A 211 ANGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLA-SGQI---RQVTDGR----SNNTEPTW 274 (415)
T ss_dssp TTCC---EEEEECCSSCEEEEEECTTSSEEEEEECTT-----SSCEEEEEETT-TCCE---EECCCCS----SCEEEEEE
T ss_pred CCCc---EEEeecCCCcccCEEEcCCCCEEEEEEecC-----CCceEEEEECC-CCCE---EeCcCCC----CcccceEE
Confidence 9998 777876666778899999999999887433 24579999998 6765 2333333 45678999
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
+|||+ |++.+++ .+..+||++|+.+++.+.++........+.|++ +++.|++.+..++...|++++
T Consensus 275 spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp------------dG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 275 FPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp CTTSSEEEEEECT-TSSCEEEEEETTSSCCEECCCSSSEEEEEEECT------------TSSEEEEEEECSSCEEEEEEE
T ss_pred CCCCCEEEEEECC-CCCcEEEEEECCCCCEEEEecCCCcccCeEECC------------CCCEEEEEECcCCceEEEEEE
Confidence 99999 8888876 677789999999998877764433333455654 888899988877888999999
Q ss_pred CCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 388 DFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 388 ~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
+++++.+.|+... .+..+ ..++++.+++.+...+...||++|++++..++|+
T Consensus 342 ~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 342 LATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp TTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred CCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence 9999998888765 45555 4555556666665555668999999887765554
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=197.63 Aligned_cols=241 Identities=14% Similarity=0.182 Sum_probs=163.2
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEcC--CCCC-
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNY--GGST- 536 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~--rG~~- 536 (732)
.+.+++.+...|..+.+.+|.|++.. .++.|+||++||+++....+. .....+.+++.||.|+++|. ||.+
T Consensus 22 ~~~~~~~s~~~~~~~~~~v~~P~~~~-----~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~ 96 (283)
T 4b6g_A 22 QQVWAHHAQTLQCEMKFAVYLPNNPE-----NRPLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQV 96 (283)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCTT-----CCCEEEEEEECCTTCCSHHHHHHSCTHHHHHHHTCEEEEECSSCCSTTS
T ss_pred EEEEEEechhhCCceEEEEEeCCCCC-----CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEEeccccccccc
Confidence 45566666557899999999998732 467899999999865443221 11245667788999999995 4432
Q ss_pred --------CCChhh-HHhhccCCC-ccc-HHHH-HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEe
Q 004735 537 --------GYGREF-RERLLGRWG-IVD-VNDC-CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 603 (732)
Q Consensus 537 --------g~g~~~-~~~~~~~~~-~~~-~~D~-~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~ 603 (732)
|.|.++ .......+. ... .+.+ .+.+.++.+... +.+|++|+|||+||++++.++. +|++|+++++
T Consensus 97 ~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 175 (283)
T 4b6g_A 97 PNDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLIEKHFP-TNGKRSIMGHSMGGHGALVLALRNQERYQSVSA 175 (283)
T ss_dssp CCCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHSC-EEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEE
T ss_pred cccccccccCCCcccccCccCcccchhhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEChhHHHHHHHHHhCCccceeEEE
Confidence 122221 111101110 011 1222 234444444433 4689999999999999999988 9999999999
Q ss_pred ecCcCCHHHHHhhcchhhhhhhhhhcC-ChhhhhhcCccccCCCCC--CCEEEEEeCCCCccChH-HHHHHHHHHHhCCC
Q 004735 604 LYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPD-QARKIYKALKENGL 679 (732)
Q Consensus 604 ~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g~ 679 (732)
.+|..+..... +....+...++ +...+...+|...+.+++ +|++++||+.|.+++.. ++.++++.|++.|+
T Consensus 176 ~s~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~g~ 250 (283)
T 4b6g_A 176 FSPILSPSLVP-----WGEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAANQ 250 (283)
T ss_dssp ESCCCCGGGSH-----HHHHHHHHHHCSCGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHHTC
T ss_pred ECCccccccCc-----chhhhHHhhcCCchHHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHHHcCC
Confidence 99988754321 11112222333 345666677766555543 59999999999998763 38899999999999
Q ss_pred CEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 680 PVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 680 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+++++++++++|.|. .+...+...++|+.++|+
T Consensus 251 ~~~~~~~~g~~H~~~---~~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 251 PVDVRFHKGYDHSYY---FIASFIGEHIAYHAAFLK 283 (283)
T ss_dssp CCEEEEETTCCSSHH---HHHHHHHHHHHHHHTTCC
T ss_pred CceEEEeCCCCcCHh---HHHHHHHHHHHHHHHhcC
Confidence 999999999999863 456778888999988774
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-20 Score=212.35 Aligned_cols=312 Identities=8% Similarity=0.006 Sum_probs=206.8
Q ss_pred CceEEcC-CCcEEEEeecCC---CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeE
Q 004735 92 GGTAVDG-HGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (732)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l 167 (732)
..+.||| |+.+++...... ......++.++..+| +.+.+....... ....|++++..|+|+. +++|
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~-~~~~l~~~~~~~-------~~~~~SPdG~~la~~~--~~~i 134 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-QLITEERIPNNT-------QWVTWSPVGHKLAYVW--NNDI 134 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECCSSCCCTTE-------EEEEECSSTTCEEEEE--TTEE
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC-cEEEcccCCCcc-------eeeEECCCCCEEEEEE--CCeE
Confidence 3489999 998888764211 011235666776654 444454322111 1234566677999995 5679
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEe----------------eceeecCCCCEEEEEEeccCCCC---------------
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSY----------------ADGIFDPRFNRYVTVREDRRQDA--------------- 216 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~----------------~~~~~spdG~~l~~~~~~~~~~~--------------- 216 (732)
|++++.+ +..++||..... ...+ ..+.|||||++|+|.+.+...-.
T Consensus 135 ~~~~~~~--~~~~~lt~~g~~-~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~ 211 (740)
T 4a5s_A 135 YVKIEPN--LPSYRITWTGKE-DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYP 211 (740)
T ss_dssp EEESSTT--SCCEECCSCCBT-TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSC
T ss_pred EEEECCC--CceEEEcCCCCc-cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCC
Confidence 9999998 889999865321 1111 23789999999999875443110
Q ss_pred ------------CCceeEEEEEEcCC---C---CccccEEccc------CCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 217 ------------LNSTTEIVAIALNG---Q---NIQEPKVLVS------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 217 ------------~~~~~~l~~~d~~~---~---~~~~~~~lt~------~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
......|+++|+++ + + .+++.. .......+.|||||+.+++...+.. +.
T Consensus 212 ~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~----~~ 284 (740)
T 4a5s_A 212 KTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT---SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ----NY 284 (740)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC---EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST----TE
T ss_pred cceeecCCCCcCcCCeeEEEEEECCCCCCCCcce---EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC----CE
Confidence 11234899999998 7 5 566654 3445678999999998887764432 35
Q ss_pred cEEEEEEecCCCc----eee-eEEecCCCCCcccc--CcCceeCCCCc-EE-EEEeccCCeeeEEEEeccCCeEEEeccc
Q 004735 273 AELWVGYISENGD----VYK-RVCVAGFDPTIVES--PTEPKWSSKGE-LF-FVTDRKNGFWNLHKWIESNNEVLAIYSL 343 (732)
Q Consensus 273 ~~l~v~d~~~~g~----~~~-~~~~~~~~~~~~~~--~~~~~wspDg~-l~-~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 343 (732)
.+|+++|++ +|+ ... ..++......|... ...|.|||||+ ++ +.+++ .|..+||++++++++.++||.+
T Consensus 285 ~~i~~~d~~-tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~-~G~~~l~~~~~~~~~~~~lT~g 362 (740)
T 4a5s_A 285 SVMDICDYD-ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE-EGYRHICYFQIDKKDCTFITKG 362 (740)
T ss_dssp EEEEEEEEE-TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT-TSCEEEEEEETTCSSCEESCCS
T ss_pred EEEEEEECC-CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC-CCceEEEEEECCCCceEecccC
Confidence 679999998 776 211 12222222122221 34799999999 76 67776 8999999999999999999976
Q ss_pred ccccCCCceeecccceeeeeecCCCCEEEEEEEE----CCEEEEEEEECCCCceE-EeccC----CCceEEe--eEeCCE
Q 004735 344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ----NGRSYLGILDDFGHSLS-LLDIP----FTDIDNI--TLGNDC 412 (732)
Q Consensus 344 ~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~----~g~~~ly~~~~~~~~~~-~lt~~----~~~v~~~--~~~~~~ 412 (732)
..++..+.+ . +++.|||++.+ .+..+||+++++++..+ +||.. ...+..+ +.+++.
T Consensus 363 ~~~v~~~~~-~------------d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~ 429 (740)
T 4a5s_A 363 TWEVIGIEA-L------------TSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKY 429 (740)
T ss_dssp SSCEEEEEE-E------------CSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSE
T ss_pred CEEEEEEEE-E------------eCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCE
Confidence 554433221 1 78899999976 56789999999987765 78753 1233333 455666
Q ss_pred EEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 413 LFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 413 ~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
+++.++++. ++.++++++++++..++
T Consensus 430 ~~~~~s~~~-~p~~~l~~~~~~~~~~~ 455 (740)
T 4a5s_A 430 YQLRCSGPG-LPLYTLHSSVNDKGLRV 455 (740)
T ss_dssp EEEEECSBS-SCEEEEEETTTTEEEEE
T ss_pred EEEEeCCCC-CCEEEEEECCCCcEEEE
Confidence 777777766 88899999988765444
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-20 Score=196.77 Aligned_cols=235 Identities=17% Similarity=0.204 Sum_probs=167.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HHHHHHHCCCEEEEEcCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
..+.+.++. +|..++++++.+. .++.|+||++||++.. ...+.. ....+.++||.|+++|+||.+..
T Consensus 134 ~~~~~~i~~--~~~~l~~~~~~~~--------~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~g~~vi~~D~~G~G~s 201 (405)
T 3fnb_A 134 PLKSIEVPF--EGELLPGYAIISE--------DKAQDTLIVVGGGDTS--REDLFYMLGYSGWEHDYNVLMVDLPGQGKN 201 (405)
T ss_dssp CCEEEEEEE--TTEEEEEEEECCS--------SSCCCEEEEECCSSCC--HHHHHHHTHHHHHHTTCEEEEECCTTSTTG
T ss_pred CcEEEEEeE--CCeEEEEEEEcCC--------CCCCCEEEEECCCCCC--HHHHHHHHHHHHHhCCcEEEEEcCCCCcCC
Confidence 457788887 6889999988542 3445999999997333 223322 33356789999999999987653
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~ 617 (732)
.. .. ........+|+.++++++..+. ++|+|+|||+||++++.++. +| +++++|+.+|+.++.......
T Consensus 202 ~~---~~--~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~ 271 (405)
T 3fnb_A 202 PN---QG--LHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRIS 271 (405)
T ss_dssp GG---GT--CCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHH
T ss_pred CC---CC--CCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHh
Confidence 21 11 1122234788999999997653 78999999999999999998 77 899999999999876543211
Q ss_pred chhh--------------------------hhhhhhhcC-Ch----hhhhhcCccccCCCCCCCEEEEEeCCCCccChHH
Q 004735 618 HKFE--------------------------SRYIDNLVG-SE----KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQ 666 (732)
Q Consensus 618 ~~~~--------------------------~~~~~~~~~-~~----~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (732)
.... ..+....-. .. ..+....+...+.++++|+|+++|++|.++++.+
T Consensus 272 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~ 351 (405)
T 3fnb_A 272 FSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQ 351 (405)
T ss_dssp CC------------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETTSCHHHHHH
T ss_pred hhhhhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCCCcCCChHH
Confidence 0000 000000000 10 1223334444477889999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHHhCC
Q 004735 667 ARKIYKALKENGLPVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 667 ~~~~~~~l~~~g~~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
+.++++.++..+.++++++++++.|+ ....++...+.+.+.+||+++++.
T Consensus 352 ~~~l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 352 SQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhccCCCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 99999999998889999999665554 234577889999999999999974
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=190.28 Aligned_cols=203 Identities=17% Similarity=0.125 Sum_probs=148.3
Q ss_pred CCCCCEEEEEcCCCCCc---cCCcccHHHHHH----HHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSE---ARGILNLSIQYW----TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF 564 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~---~~~~~~~~~~~l----~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~ 564 (732)
.++.|+||++||+++.. ....+...++.| ++.||.|+++|||+++..... ..++|+.+++++
T Consensus 38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~~~~-----------~~~~d~~~~~~~ 106 (273)
T 1vkh_A 38 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITNP-----------RNLYDAVSNITR 106 (273)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCTT-----------HHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCCCCC-----------cHHHHHHHHHHH
Confidence 45679999999986543 334566677777 578999999999976542211 237899999999
Q ss_pred HHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-----------------CCcceEEEeecCcCCHHHHHhhcchhhhhhhh
Q 004735 565 LVGSGKADEKRLCITGGSAGGYTTLAALA-F-----------------RDTFKAGASLYGVADLSMLRAETHKFESRYID 626 (732)
Q Consensus 565 l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-----------------p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 626 (732)
+.++ ++.++++|+|||+||++++.++. + +++++++++.+|..++.........+ ..+..
T Consensus 107 l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~-~~~~~ 183 (273)
T 1vkh_A 107 LVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEY-DCFTR 183 (273)
T ss_dssp HHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGG-HHHHH
T ss_pred HHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccH-HHHHH
Confidence 9887 46789999999999999999988 4 88999999999999877654432221 11222
Q ss_pred hhcC-Chhhhh----hcCccc--cCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccH
Q 004735 627 NLVG-SEKDYY----EKSPIN--FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI 699 (732)
Q Consensus 627 ~~~~-~~~~~~----~~sp~~--~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~ 699 (732)
..++ ..+.+. ..++.. ....+++|+|+++|++|.++|+++++++++.+++.+.+++++++++++|.+....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~~~~~-- 261 (273)
T 1vkh_A 184 LAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYKN-- 261 (273)
T ss_dssp HHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGGGGGGC--
T ss_pred HHhcccccchhhcccccChhhhhcccccCCCEEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeCCCcccccccC--
Confidence 2221 111111 112211 1222678999999999999999999999999999999999999999999864433
Q ss_pred HHHHHHHHHHH
Q 004735 700 KFTLEQQMVFF 710 (732)
Q Consensus 700 ~~~~~~~~~fl 710 (732)
.++.+.+.+||
T Consensus 262 ~~~~~~i~~fl 272 (273)
T 1vkh_A 262 GKVAKYIFDNI 272 (273)
T ss_dssp HHHHHHHHHTC
T ss_pred hHHHHHHHHHc
Confidence 66777777765
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=212.72 Aligned_cols=247 Identities=16% Similarity=0.171 Sum_probs=175.9
Q ss_pred ccCCCeE--EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc-------------------C----------------
Q 004735 468 TEVPGQK--AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-------------------R---------------- 510 (732)
Q Consensus 468 ~~~~g~~--i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~-------------------~---------------- 510 (732)
.. ||.+ +.+.+|.|++ .++.|+||..|+...... .
T Consensus 180 ~~-DG~~d~L~a~l~~P~~-------~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ 251 (763)
T 1lns_A 180 EQ-RGENDLIKIQIIRPKS-------TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAK 251 (763)
T ss_dssp TC-SSSCCEEEEEEEECCC-------SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCC
T ss_pred CC-CCCeeeEEEEEEecCC-------CCcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccc
Confidence 44 8998 9999999986 457899998887532210 0
Q ss_pred -----------Ccc-----cHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc------
Q 004735 511 -----------GIL-----NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS------ 568 (732)
Q Consensus 511 -----------~~~-----~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~------ 568 (732)
..+ ....+.|+++||+|+++|+||.++++..+ ..++..+.+|+.++++||..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~-----~~~~~~e~~D~~a~IdwL~~~~~~~~d 326 (763)
T 1lns_A 252 AKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMTAVIDWLNGRARAYTS 326 (763)
T ss_dssp CCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHHHHHHHHTTSSCEESS
T ss_pred cccccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcC-----CCCCHHHHHHHHHHHHHHhhccccccc
Confidence 011 13458899999999999999987654331 223334689999999999842
Q ss_pred --------CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc------hhh------------
Q 004735 569 --------GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH------KFE------------ 621 (732)
Q Consensus 569 --------~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~------~~~------------ 621 (732)
...+.+||+++|+||||++++.++. +|+.++++|+.+|+.++........ .+.
T Consensus 327 ~~~~~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~ 406 (763)
T 1lns_A 327 RKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTY 406 (763)
T ss_dssp TTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHC
T ss_pred ccccccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHH
Confidence 1234579999999999999999988 8999999999999987654322100 000
Q ss_pred -h---------------hhhhhh---c--C---ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 622 -S---------------RYIDNL---V--G---SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 622 -~---------------~~~~~~---~--~---~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
. .++..+ . . ..+.|...++...+++|++|+|++||.+|.++++.++.++++++++
T Consensus 407 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp~~~a~~l~~al~~- 485 (763)
T 1lns_A 407 SRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE- 485 (763)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-
T ss_pred hhhcCcchhhhHHHHHHHHHHHHHhhhhhccCchhHHhhccChhhHhhcCCCCEEEEEECCCCCCChHHHHHHHHhhcc-
Confidence 0 000000 0 0 1234556677888999999999999999999999999999999987
Q ss_pred CCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCCCCCCCCCccccc
Q 004735 678 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADEIIPIKID 729 (732)
Q Consensus 678 g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~ 729 (732)
+.+.++++ .+++|..........+.+.+++||+++|++.++....|++.+.
T Consensus 486 ~~~~~l~i-~~~gH~~~~~~~~~~~~~~i~~Ffd~~Lkg~~ng~~~P~v~~~ 536 (763)
T 1lns_A 486 GHAKHAFL-HRGAHIYMNSWQSIDFSETINAYFVAKLLDRDLNLNLPPVILQ 536 (763)
T ss_dssp TCCEEEEE-ESCSSCCCTTBSSCCHHHHHHHHHHHHHTTCCCCCCCCSEEEE
T ss_pred CCCeEEEE-eCCcccCccccchHHHHHHHHHHHHHHhcCCCCCCCCCcEEEE
Confidence 66666655 5678975332223356789999999999976543366777665
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=197.23 Aligned_cols=238 Identities=17% Similarity=0.180 Sum_probs=164.6
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-HHHHHHHHCCCEEEEEcCCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~rG~~g 537 (732)
...+.+.+.+. +|..++++++.|.+. +.++.|+||++||+++. ...+. ..++.|+++||.|+++|+||.+.
T Consensus 66 ~~~~~~~~~~~-~g~~~~~~~~~p~~~-----~~~~~p~vv~~hG~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~ 137 (367)
T 2hdw_A 66 VEHRKVTFANR-YGITLAADLYLPKNR-----GGDRLPAIVIGGPFGAV--KEQSSGLYAQTMAERGFVTLAFDPSYTGE 137 (367)
T ss_dssp EEEEEEEEECT-TSCEEEEEEEEESSC-----CSSCEEEEEEECCTTCC--TTSHHHHHHHHHHHTTCEEEEECCTTSTT
T ss_pred ceeEEEEEecC-CCCEEEEEEEeCCCC-----CCCCCCEEEEECCCCCc--chhhHHHHHHHHHHCCCEEEEECCCCcCC
Confidence 35678889887 899999999999751 13567999999998543 23333 36788999999999999998764
Q ss_pred CChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh
Q 004735 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE 616 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~ 616 (732)
...... .........+|+.++++++.++..+|.++++++|||+||.+++.++. +| +++++|+.+|. +.......
T Consensus 138 s~~~~~---~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~-~~~~~~~~ 212 (367)
T 2hdw_A 138 SGGQPR---NVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMY-DMTRVMSK 212 (367)
T ss_dssp SCCSSS---SCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCC-CHHHHHHH
T ss_pred CCCcCc---cccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEeccc-cccHHHhh
Confidence 332110 00011234789999999999988788899999999999999999998 77 69999999976 32211100
Q ss_pred c-c------------------------------------------hhhhh---hhhhhc---------------CChhhh
Q 004735 617 T-H------------------------------------------KFESR---YIDNLV---------------GSEKDY 635 (732)
Q Consensus 617 ~-~------------------------------------------~~~~~---~~~~~~---------------~~~~~~ 635 (732)
. . .+... +..... .....+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (367)
T 2hdw_A 213 GYNDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSF 292 (367)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHh
Confidence 0 0 00000 000000 011223
Q ss_pred hhcCccccCCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 636 YEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 636 ~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
...++...+.+++ +|+|+++|++|. ++.+++++++. .+.+++++++++++|.+..........+.+.+||+++|
T Consensus 293 ~~~~~~~~~~~i~~~PvLii~G~~D~--~~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~~~~i~~fl~~~l 367 (367)
T 2hdw_A 293 MNMPILTYIKEISPRPILLIHGERAH--SRYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIPFDRIAGFFDEHL 367 (367)
T ss_dssp TTSCSCTTGGGGTTSCEEEEEETTCT--THHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSCHHHHHHHHHHHC
T ss_pred cCCChhHhHHhhcCCceEEEecCCCC--CHHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHHHHHHHHHHHhhC
Confidence 3456667788888 999999999998 77787777765 56789999999999973211111126788899998875
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=198.62 Aligned_cols=237 Identities=16% Similarity=0.116 Sum_probs=157.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc---ccHHHHHHH-HCCCEEEEEcCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQYWT-SRGWAFVDVNYGGS 535 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~---~~~~~~~l~-~~G~~v~~~d~rG~ 535 (732)
..+.+.+.. +..+.+.+|.|+... .+.++.|+||++|||++...... +...+..|+ +.||.|+++||||.
T Consensus 54 ~~~~v~~~~---~~~~~~~~~~P~~~~---~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~ 127 (338)
T 2o7r_A 54 LTKDLALNP---LHNTFVRLFLPRHAL---YNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLA 127 (338)
T ss_dssp EEEEEEEET---TTTEEEEEEEEGGGG---GSSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred EEEEEEecC---CCCeEEEEEeCCCCC---cCCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCC
Confidence 345566654 444666677786510 01356799999999865433322 556677787 78999999999987
Q ss_pred CCCChhhHHhhccCCCcccHHHHHHHHHHHHhcC------CCCCCcEEEEEcChHHHHHHHHHh-CCC--------cceE
Q 004735 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG------KADEKRLCITGGSAGGYTTLAALA-FRD--------TFKA 600 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~------~~d~~ri~i~G~S~GG~~a~~~~~-~p~--------~~~a 600 (732)
+.+... ..++|+.++++|+.++. .+|.++++|+|||+||++++.++. +|+ ++++
T Consensus 128 ~~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~ 196 (338)
T 2o7r_A 128 PEHRLP-----------AAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKG 196 (338)
T ss_dssp TTTCTT-----------HHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEE
T ss_pred CCCCCc-----------hHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeE
Confidence 653221 23789999999998862 256689999999999999999988 777 8999
Q ss_pred EEeecCcCCHHHHHhhc-----c-----hhhhhhhhhhc--CChhhhhhcCccc---------cCCCCCCCEEEEEeCCC
Q 004735 601 GASLYGVADLSMLRAET-----H-----KFESRYIDNLV--GSEKDYYEKSPIN---------FVDKFSCPIILFQGLED 659 (732)
Q Consensus 601 ~v~~~~~~d~~~~~~~~-----~-----~~~~~~~~~~~--~~~~~~~~~sp~~---------~~~~i~~P~Lii~G~~D 659 (732)
+|+.+|+.+........ . .....++.... +........+|+. .+..+.+|+|+++|++|
T Consensus 197 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D 276 (338)
T 2o7r_A 197 LVLDEPGFGGSKRTGSELRLANDSRLPTFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGD 276 (338)
T ss_dssp EEEESCCCCCSSCCHHHHHTTTCSSSCHHHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHHHHHTCEEEEEEETTS
T ss_pred EEEECCccCCCcCChhhhccCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhhcCCCCCEEEEECCCC
Confidence 99999987543211000 0 00001111111 0000001112221 12234569999999999
Q ss_pred CccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHHHhC
Q 004735 660 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR--KAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~--~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.+++ ...++++.|++.+.+++++++++++|.+. .++...+.++.+.+||+++++
T Consensus 277 ~~~~--~~~~~~~~l~~~~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~ 332 (338)
T 2o7r_A 277 PMID--RQMELAERLEKKGVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSCT 332 (338)
T ss_dssp TTHH--HHHHHHHHHHHTTCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC----
T ss_pred cchH--HHHHHHHHHHHCCCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhcc
Confidence 9876 56788999999999999999999999864 334557888999999988875
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=193.93 Aligned_cols=211 Identities=15% Similarity=0.188 Sum_probs=149.4
Q ss_pred CCCCEEEEEcCCCCCccC-CcccHHHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEAR-GILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
..+|+||++|||++.... ..+...+..|+.+ ||.|+++|||++++.... ..++|+.++++|+.++ .
T Consensus 78 ~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~~~-----------~~~~d~~~a~~~l~~~-~ 145 (322)
T 3k6k_A 78 AGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENPFP-----------AAVDDCVAAYRALLKT-A 145 (322)
T ss_dssp CCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSCTT-----------HHHHHHHHHHHHHHHH-H
T ss_pred CCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCCCc-----------hHHHHHHHHHHHHHHc-C
Confidence 344559999998643322 3344566667654 999999999987654321 2378999999999988 5
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCc----ceEEEeecCcCCHHHHHhhcch-----------hhhhhhhhhcC-Chh
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDT----FKAGASLYGVADLSMLRAETHK-----------FESRYIDNLVG-SEK 633 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~----~~a~v~~~~~~d~~~~~~~~~~-----------~~~~~~~~~~~-~~~ 633 (732)
+|+++|+|+|+|+||++++.++. +++. ++++++++|+.++......... ....+...+.+ ...
T Consensus 146 ~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (322)
T 3k6k_A 146 GSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSRWSNSNLADRDFLAEPDTLGEMSELYVGGEDR 225 (322)
T ss_dssp SSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCSHHHHHTGGGCSSSCHHHHHHHHHHHHTTSCT
T ss_pred CCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCccchhhccCCCCcCCHHHHHHHHHHhcCCCCC
Confidence 68899999999999999999887 5554 9999999999875421110000 00111111111 111
Q ss_pred hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC----cccHHHHHHHHHHH
Q 004735 634 DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVF 709 (732)
Q Consensus 634 ~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~f 709 (732)
.....+|+.......+|+||++|++|.+ ..++..+++.|++.|+++++++|++++|+|.. .+...+.++.+.+|
T Consensus 226 ~~~~~sp~~~~~~~~pP~li~~G~~D~~--~~~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~f 303 (322)
T 3k6k_A 226 KNPLISPVYADLSGLPEMLIHVGSEEAL--LSDSTTLAERAGAAGVSVELKIWPDMPHVFQMYGKFVNAADISIKEICHW 303 (322)
T ss_dssp TCTTTCGGGSCCTTCCCEEEEEESSCTT--HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHH
T ss_pred CCCcCCcccccccCCCcEEEEECCcCcc--HHHHHHHHHHHHHCCCCEEEEEECCCccccccccccChHHHHHHHHHHHH
Confidence 1122355544444457999999999987 57889999999999999999999999998743 24467889999999
Q ss_pred HHHHhCCC
Q 004735 710 FARVVGHF 717 (732)
Q Consensus 710 l~~~l~~~ 717 (732)
|+++|+..
T Consensus 304 l~~~l~~~ 311 (322)
T 3k6k_A 304 ISARISKL 311 (322)
T ss_dssp HHTTCC--
T ss_pred HHHHHhcc
Confidence 99999743
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-20 Score=193.56 Aligned_cols=235 Identities=14% Similarity=0.079 Sum_probs=163.5
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC-C--cccHHHHHHHHCCCEEEEEcCCCCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-G--ILNLSIQYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~-~--~~~~~~~~l~~~G~~v~~~d~rG~~g 537 (732)
.+.+.+... +|..+.+.+|.|... .++.|+||++||+++.... . .+......|+++||.|+++||||.++
T Consensus 82 ~~~~~~~~~-~g~~l~~~v~~p~~~------~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg 154 (361)
T 1jkm_A 82 TSTETILGV-DGNEITLHVFRPAGV------EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWT 154 (361)
T ss_dssp EEEEEEECT-TSCEEEEEEEEETTC------CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEE
T ss_pred eeeeeeecC-CCCeEEEEEEeCCCC------CCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCC
Confidence 456777776 787899999999761 2367999999998643222 2 45556788888999999999998764
Q ss_pred CChhhHHhhccCCCcccHHHHHHHHHHHHhcC---CCCCCcEEEEEcChHHHHHHHHHh------CCCcceEEEeecCcC
Q 004735 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSG---KADEKRLCITGGSAGGYTTLAALA------FRDTFKAGASLYGVA 608 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~------~p~~~~a~v~~~~~~ 608 (732)
+... ........|+.++++|+.++. ..| +|+|+|||+||++++.++. +|++++++|+.+|+.
T Consensus 155 ~~~~-------~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~ 225 (361)
T 1jkm_A 155 AEGH-------HPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYI 225 (361)
T ss_dssp TTEE-------CCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCC
T ss_pred CCCC-------CCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCcc
Confidence 3211 112234789999999998762 334 9999999999999998876 466899999999988
Q ss_pred CH---------HHHHhhcchh---------hhhhhhhhcCCh--hhhhhcCcc----ccCCCCCCCEEEEEeCCCCccCh
Q 004735 609 DL---------SMLRAETHKF---------ESRYIDNLVGSE--KDYYEKSPI----NFVDKFSCPIILFQGLEDKVVPP 664 (732)
Q Consensus 609 d~---------~~~~~~~~~~---------~~~~~~~~~~~~--~~~~~~sp~----~~~~~i~~P~Lii~G~~D~~v~~ 664 (732)
+. .......... ...+...+.... ......+|+ ..+.++. |+||++|++|.+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~l~-P~Lii~G~~D~~~~- 303 (361)
T 1jkm_A 226 SGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLP-PFVVAVNELDPLRD- 303 (361)
T ss_dssp CCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCC-CEEEEEETTCTTHH-
T ss_pred ccccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcCCC-ceEEEEcCcCcchh-
Confidence 76 2111100000 001111111110 011122333 2245565 99999999999886
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCC-C----cccH-HHHHHHHHHHHHHHh
Q 004735 665 DQARKIYKALKENGLPVALVEYEGEQHGFR-K----AENI-KFTLEQQMVFFARVV 714 (732)
Q Consensus 665 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~-~----~~~~-~~~~~~~~~fl~~~l 714 (732)
++.++++.+++.|++++++++++++|.+. . .+.. .+.++.+.+||+++.
T Consensus 304 -~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 304 -EGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp -HHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999875 2 1333 778889999998764
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-21 Score=185.33 Aligned_cols=187 Identities=14% Similarity=0.075 Sum_probs=130.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHH---hc
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV---GS 568 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~---~~ 568 (732)
.+..++||++||.+.. ...+..+++.|...|+.|++||.+|.+.|+..+......+. ..+++..+.++.+. .+
T Consensus 19 ~~a~~~Vv~lHG~G~~--~~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~ 94 (210)
T 4h0c_A 19 QRAKKAVVMLHGRGGT--AADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQNQ--PALDSALALVGEVVAEIEA 94 (210)
T ss_dssp TTCSEEEEEECCTTCC--HHHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGGT--THHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCC--HHHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcccch--HHHHHHHHHHHHHHHHHHH
Confidence 3456899999996332 23344455666678999999998876655443322222111 12333333333332 22
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCC
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 647 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i 647 (732)
..+|++||+|+|+|+||++++.++. +|++++++++++|........ .. . ......
T Consensus 95 ~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~~-----------------~~---~----~~~~~~ 150 (210)
T 4h0c_A 95 QGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQELA-----------------IG---N----YKGDFK 150 (210)
T ss_dssp TTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSCC-----------------GG---G----CCBCCT
T ss_pred hCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhhh-----------------hh---h----hhhhcc
Confidence 4689999999999999999999988 999999999998854211000 00 0 001123
Q ss_pred CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 648 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
.+|+|++||++|++||++.++++++.|++.|.++++++||+.||.+. .+.++.+.+||.
T Consensus 151 ~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~-----~~el~~i~~wL~ 209 (210)
T 4h0c_A 151 QTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRPHTIS-----GDEIQLVNNTIL 209 (210)
T ss_dssp TCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEETCCSSCC-----HHHHHHHHHTTT
T ss_pred CCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCcC-----HHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999875 244566666664
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=186.57 Aligned_cols=198 Identities=16% Similarity=0.134 Sum_probs=152.1
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC-ccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~-~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
+...++-. ++..+.+.+|.|.. ++.|+||++||+++. .....+...++.|+++||.|+++|+||++.+..
T Consensus 39 ~~~~i~~~-~~~~~~~~~~~p~~--------~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~~ 109 (262)
T 2pbl_A 39 ARLNLSYG-EGDRHKFDLFLPEG--------TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRI 109 (262)
T ss_dssp EEEEEESS-SSTTCEEEEECCSS--------SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSCH
T ss_pred CccccccC-CCCCceEEEEccCC--------CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCCh
Confidence 44455544 56666777787753 456999999997642 334456667888999999999999998764321
Q ss_pred hhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C------CCcceEEEeecCcCCHHHH
Q 004735 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F------RDTFKAGASLYGVADLSML 613 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~------p~~~~a~v~~~~~~d~~~~ 613 (732)
. ...+|+.++++++..+.. ++++|+|||+||++++.++. + +++++++|+++|+.++...
T Consensus 110 ~-----------~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~ 175 (262)
T 2pbl_A 110 S-----------EITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPL 175 (262)
T ss_dssp H-----------HHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGG
T ss_pred H-----------HHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHH
Confidence 1 226889999999988743 79999999999999999988 6 8999999999999886543
Q ss_pred Hhhcchhhhhhhhh-hcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 614 RAETHKFESRYIDN-LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 614 ~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
... +... +....+.+...+|...+.++++|+|+++|++|.+++++++.++++.++ ++++++++++|.
T Consensus 176 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~H~ 243 (262)
T 2pbl_A 176 LRT-------SMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHHF 243 (262)
T ss_dssp GGS-------TTHHHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCTT
T ss_pred Hhh-------hhhhhhCCCHHHHHhcCcccccCCCCCCEEEEEeCCCCcccHHHHHHHHHHhC-----CeEEEeCCCCcc
Confidence 221 1111 112345666778888888999999999999999999999999999886 589999999997
Q ss_pred CC
Q 004735 693 FR 694 (732)
Q Consensus 693 ~~ 694 (732)
+.
T Consensus 244 ~~ 245 (262)
T 2pbl_A 244 NV 245 (262)
T ss_dssp TT
T ss_pred hH
Confidence 54
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-20 Score=191.92 Aligned_cols=234 Identities=17% Similarity=0.194 Sum_probs=164.2
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~ 544 (732)
.+... +|.++.+.++.|.+ .+.|+||++||++.. ...|...+..|+++||.|+++|+||.+.....
T Consensus 39 ~~~~~-dg~~l~~~~~~p~~--------~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~--- 104 (342)
T 3hju_A 39 HLVNA-DGQYLFCRYWKPTG--------TPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGHGQSEGE--- 104 (342)
T ss_dssp EEECT-TSCEEEEEEECCSS--------CCSEEEEEECCTTCC--GGGGHHHHHHHHTTTEEEEEECCTTSTTSCSS---
T ss_pred eEEcc-CCeEEEEEEeCCCC--------CCCcEEEEECCCCcc--cchHHHHHHHHHhCCCeEEEEcCCCCcCCCCc---
Confidence 56676 89999999998853 456999999998544 34677788999999999999999987654321
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc-chhhh
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HKFES 622 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-~~~~~ 622 (732)
......-...++|+.++++++..+ .+.++++|+|||+||++++.++. +|++++++|+++|..+........ .....
T Consensus 105 ~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 182 (342)
T 3hju_A 105 RMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAA 182 (342)
T ss_dssp TTCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhHHHHHHH
Confidence 101001112378999999999887 35679999999999999999998 999999999999976532110000 00000
Q ss_pred hhhhhhc-------------C-Chhhh--hhc----------------------CccccCCCCCCCEEEEEeCCCCccCh
Q 004735 623 RYIDNLV-------------G-SEKDY--YEK----------------------SPINFVDKFSCPIILFQGLEDKVVPP 664 (732)
Q Consensus 623 ~~~~~~~-------------~-~~~~~--~~~----------------------sp~~~~~~i~~P~Lii~G~~D~~v~~ 664 (732)
.++.... . +.... ... +....+.++++|+|+++|++|.++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~ 262 (342)
T 3hju_A 183 KVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDS 262 (342)
T ss_dssp HHHHHHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSSCH
T ss_pred HHHHHhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcCEEEEEeCCCcccCh
Confidence 0000000 0 00000 000 11134677899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--cccHHHHHHHHHHHHHHHhCC
Q 004735 665 DQARKIYKALKENGLPVALVEYEGEQHGFRK--AENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 665 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~l~~ 716 (732)
+.+.++++.+.. .++++++++++||.+.. ++...+.++.+++||++++..
T Consensus 263 ~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (342)
T 3hju_A 263 KGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 314 (342)
T ss_dssp HHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC--CCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhcccCC
Confidence 999998887753 25799999999998643 344667888899999999863
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=182.79 Aligned_cols=228 Identities=16% Similarity=0.185 Sum_probs=152.6
Q ss_pred EEEEe-eccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 462 ELIEF-PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 462 ~~i~~-~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
+.+.+ .+. +|.++.+..+.+.+ ...|+||++||++.....+.+......++++||.|+++|+||.+....
T Consensus 12 ~~~~~~~~~-~g~~l~~~~~~~~~--------~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~ 82 (270)
T 3llc_A 12 HAITVGQGS-DARSIAALVRAPAQ--------DERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGG 82 (270)
T ss_dssp EEEEESSGG-GCEEEEEEEECCSS--------TTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTTCCS
T ss_pred ceEEEeecc-CcceEEEEeccCCC--------CCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCCCCC
Confidence 44555 455 89999988776643 236899999998655444444557788888999999999998765433
Q ss_pred hhHHhhccCCCc-ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CC---CcceEEEeecCcCCHHH
Q 004735 541 EFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FR---DTFKAGASLYGVADLSM 612 (732)
Q Consensus 541 ~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p---~~~~a~v~~~~~~d~~~ 612 (732)
.... ... ...+|+.++++++. .++++|+|||+||.+++.++. +| ++++++|+.+|..++..
T Consensus 83 ~~~~-----~~~~~~~~d~~~~~~~l~------~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~ 151 (270)
T 3llc_A 83 AFRD-----GTISRWLEEALAVLDHFK------PEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTS 151 (270)
T ss_dssp CGGG-----CCHHHHHHHHHHHHHHHC------CSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHH
T ss_pred cccc-----ccHHHHHHHHHHHHHHhc------cCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchh
Confidence 2111 110 11445555555552 578999999999999998875 68 89999999999887654
Q ss_pred HHhh---cchhhhhhhhh--------hcCC--------hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHH
Q 004735 613 LRAE---THKFESRYIDN--------LVGS--------EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673 (732)
Q Consensus 613 ~~~~---~~~~~~~~~~~--------~~~~--------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (732)
.... .......+... +... .+.+........+.++++|+|+++|++|.+++.+.++++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~~~~~~~~~~~ 231 (270)
T 3llc_A 152 DLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEH 231 (270)
T ss_dssp HTTGGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSCHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCCHHHHHHHHHh
Confidence 2110 00000000000 0000 011222333456778899999999999999999999888887
Q ss_pred HHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 674 LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 674 l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++. .+++++++++++|.+...+....+.+.+.+||+
T Consensus 232 ~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~ 267 (270)
T 3llc_A 232 LPA--DDVVLTLVRDGDHRLSRPQDIDRMRNAIRAMIE 267 (270)
T ss_dssp SCS--SSEEEEEETTCCSSCCSHHHHHHHHHHHHHHHC
T ss_pred cCC--CCeeEEEeCCCcccccccccHHHHHHHHHHHhc
Confidence 653 248999999999987665666666666666664
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=183.72 Aligned_cols=188 Identities=18% Similarity=0.216 Sum_probs=147.9
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHH
Q 004735 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN 556 (732)
Q Consensus 477 ~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~ 556 (732)
+.++.|... ..++.|+||++||++.. ...+...++.|+++||.|+++|+||.+.... ....
T Consensus 41 ~~l~~p~~~-----~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~------------~~~~ 101 (262)
T 1jfr_A 41 GTIYYPTST-----ADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SRGR 101 (262)
T ss_dssp EEEEEESCC-----TTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCHH------------HHHH
T ss_pred eeEEecCCC-----CCCCCCEEEEeCCcCCC--chhHHHHHHHHHhCCCEEEEeCCCCCCCCCc------------hhHH
Confidence 455666541 13567999999998543 3456667888999999999999997654321 1246
Q ss_pred HHHHHHHHHHh----cCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCC
Q 004735 557 DCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 631 (732)
Q Consensus 557 D~~~~i~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 631 (732)
|+.++++++.+ ...++.++++|+|||+||++++.++. +|+ ++++|+++|...
T Consensus 102 d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~---------------------- 158 (262)
T 1jfr_A 102 QLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT---------------------- 158 (262)
T ss_dssp HHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS----------------------
T ss_pred HHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc----------------------
Confidence 78889999987 34467789999999999999999998 887 899999988642
Q ss_pred hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHH-HHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 632 EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 632 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
...+.++++|+|+++|++|.+++++. ++++++.++ .+.+++++++++++|.+.. +...++.+.+.+||
T Consensus 159 ---------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~H~~~~-~~~~~~~~~i~~fl 227 (262)
T 1jfr_A 159 ---------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLP-GSLDKAYLELRGASHFTPN-TSDTTIAKYSISWL 227 (262)
T ss_dssp ---------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSC-TTSCEEEEEETTCCTTGGG-SCCHHHHHHHHHHH
T ss_pred ---------cccccccCCCEEEEecCccccCCchhhHHHHHHHhh-cCCCceEEEeCCCCcCCcc-cchHHHHHHHHHHH
Confidence 22355678999999999999999998 999999984 3567899999999998644 33478899999999
Q ss_pred HHHhCCC
Q 004735 711 ARVVGHF 717 (732)
Q Consensus 711 ~~~l~~~ 717 (732)
++++++.
T Consensus 228 ~~~l~~~ 234 (262)
T 1jfr_A 228 KRFIDSD 234 (262)
T ss_dssp HHHHSCC
T ss_pred HHHhcCc
Confidence 9999854
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-20 Score=190.62 Aligned_cols=191 Identities=16% Similarity=0.180 Sum_probs=152.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.. .+.+|.|.. ..+.|+||++||++.. ...+....+.|+++||.|+++|+||.+....
T Consensus 80 ~g~~-~~~~~~p~~-------~~~~p~vv~~HG~~~~--~~~~~~~~~~la~~G~~vv~~d~~g~g~s~~---------- 139 (306)
T 3vis_A 80 DGFG-GGTIYYPRE-------NNTYGAIAISPGYTGT--QSSIAWLGERIASHGFVVIAIDTNTTLDQPD---------- 139 (306)
T ss_dssp SSSC-CEEEEEESS-------CSCEEEEEEECCTTCC--HHHHHHHHHHHHTTTEEEEEECCSSTTCCHH----------
T ss_pred CCCc-ceEEEeeCC-------CCCCCEEEEeCCCcCC--HHHHHHHHHHHHhCCCEEEEecCCCCCCCcc----------
Confidence 3443 245666765 3367999999997433 3456678889999999999999998654322
Q ss_pred CcccHHHHHHHHHHHHhc------CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhh
Q 004735 551 GIVDVNDCCSCATFLVGS------GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESR 623 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~------~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 623 (732)
...+|+.++++++.+. ..+|.++++++|||+||++++.++. +|+ ++++++++|...
T Consensus 140 --~~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~-------------- 202 (306)
T 3vis_A 140 --SRARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL-------------- 202 (306)
T ss_dssp --HHHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS--------------
T ss_pred --hHHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC--------------
Confidence 1247888999999887 6788899999999999999999998 776 999999988643
Q ss_pred hhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChH-HHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHH
Q 004735 624 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPD-QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFT 702 (732)
Q Consensus 624 ~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~ 702 (732)
...+.++++|+|+++|++|.+++++ +.+.+++.++..+ +++++++++++|.+.. +...+.
T Consensus 203 -----------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~~-~~~~~~ 263 (306)
T 3vis_A 203 -----------------NKSWRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELDGASHFAPN-ITNKTI 263 (306)
T ss_dssp -----------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEETTCCTTGGG-SCCHHH
T ss_pred -----------------ccccccCCCCEEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEECCCCccchh-hchhHH
Confidence 1234567899999999999999998 6999999888766 8899999999998644 333788
Q ss_pred HHHHHHHHHHHhCCC
Q 004735 703 LEQQMVFFARVVGHF 717 (732)
Q Consensus 703 ~~~~~~fl~~~l~~~ 717 (732)
.+.+.+||++++++.
T Consensus 264 ~~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 264 GMYSVAWLKRFVDED 278 (306)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHccCc
Confidence 899999999999743
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-19 Score=182.94 Aligned_cols=233 Identities=17% Similarity=0.189 Sum_probs=162.9
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~ 544 (732)
.+... +|.+++++++.|.+ .+.|+||++||.+.. ...|...++.|+++||.|+++|+||.+.....
T Consensus 21 ~~~~~-~g~~l~~~~~~~~~--------~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~--- 86 (303)
T 3pe6_A 21 HLVNA-DGQYLFCRYWAPTG--------TPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGHGQSEGE--- 86 (303)
T ss_dssp EEECT-TSCEEEEEEECCSS--------CCSEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTSTTSCSS---
T ss_pred eEecC-CCeEEEEEEeccCC--------CCCeEEEEECCCCch--hhHHHHHHHHHHhCCCcEEEeCCCCCCCCCCC---
Confidence 56666 89999999998853 447999999998443 34677788999999999999999987654321
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc-chhhh
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HKFES 622 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-~~~~~ 622 (732)
......-...++|+.+.++++..+. +.++++++|||+||.+++.++. +|++++++|+++|........... .....
T Consensus 87 ~~~~~~~~~~~~d~~~~l~~l~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 164 (303)
T 3pe6_A 87 RMVVSDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAA 164 (303)
T ss_dssp TTCCSSTHHHHHHHHHHHHHHHHHS--TTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhcc--CCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHH
Confidence 1100001123788888999888763 4579999999999999999998 999999999999986543211100 00000
Q ss_pred hhhhhhc-------------C-Chh---hhhh---------------------cCccccCCCCCCCEEEEEeCCCCccCh
Q 004735 623 RYIDNLV-------------G-SEK---DYYE---------------------KSPINFVDKFSCPIILFQGLEDKVVPP 664 (732)
Q Consensus 623 ~~~~~~~-------------~-~~~---~~~~---------------------~sp~~~~~~i~~P~Lii~G~~D~~v~~ 664 (732)
....... . +.. .+.. ......+.++++|+|+++|++|.+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~ 244 (303)
T 3pe6_A 165 KVLNSVLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDS 244 (303)
T ss_dssp HHHHTTCCSCCCCCCCGGGTCSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSBCH
T ss_pred HHHHHhcccccCCccchhhhhcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCCh
Confidence 0000000 0 000 0000 001134677899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--cccHHHHHHHHHHHHHHHhC
Q 004735 665 DQARKIYKALKENGLPVALVEYEGEQHGFRK--AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 665 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~~l~ 715 (732)
+.++++.+.+.. .++++++++++||.+.. ++...+.++.+++||++++.
T Consensus 245 ~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~ 295 (303)
T 3pe6_A 245 KGAYLLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTA 295 (303)
T ss_dssp HHHHHHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccc--CCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccCC
Confidence 999998887753 35799999999998643 34466788889999999886
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-20 Score=184.59 Aligned_cols=243 Identities=15% Similarity=0.101 Sum_probs=159.3
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---HHHHHHHCCCEEEEEcCCCCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~rG~~g 537 (732)
.+.+++.+...|..+.+.+|.|++.....++.++.|+||++||+++.. ..+.. ....+...|+.|+.+|+++++.
T Consensus 7 ~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 84 (263)
T 2uz0_A 7 VMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNH--NSWLKRTNVERLLRGTNLIVVMPNTSNGWY 84 (263)
T ss_dssp EEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCT--THHHHHSCHHHHTTTCCCEEEECCCTTSTT
T ss_pred EeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCH--HHHHhccCHHHHHhcCCeEEEEECCCCCcc
Confidence 456777765478899999999987310001245789999999985443 23333 2333445799999999987643
Q ss_pred CChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhc
Q 004735 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~ 617 (732)
..... ...+.....+|+...++.+..+..+|.++++|+|||+||++++.++.+|++++++++++|..++..+....
T Consensus 85 ~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~v~~~~~~~~~~~~~~~ 160 (263)
T 2uz0_A 85 TDTQY----GFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLALTTNRFSHAASFSGALSFQNFSPES 160 (263)
T ss_dssp SBCTT----SCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHHHHCCCSEEEEESCCCCSSSCCGGG
T ss_pred ccCCC----cccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHhCccccceEEEecCCcchhhccccc
Confidence 21110 00000011345555555554434567899999999999999998766888999999999988765421100
Q ss_pred c-hhhhhhhhhhcCC--hhhhhhcCccccCCCCC--CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 618 H-KFESRYIDNLVGS--EKDYYEKSPINFVDKFS--CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 618 ~-~~~~~~~~~~~~~--~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
. .....+....++. ...+...+|...+.++. +|+|++||++|.++ ..++++++.+++.|.+++++++++ +|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v--~~~~~~~~~l~~~g~~~~~~~~~g-~H~ 237 (263)
T 2uz0_A 161 QNLGSPAYWRGVFGEIRDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLY--EANNLAVKNLKKLGFDVTYSHSAG-THE 237 (263)
T ss_dssp TTCSCHHHHHHHHCCCSCTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTH--HHHHHHHHHHHHTTCEEEEEEESC-CSS
T ss_pred cccccchhHHHHcCChhhhccccCCHHHHHHhccCCCeEEEEeCCCchhh--HHHHHHHHHHHHCCCCeEEEECCC-CcC
Confidence 0 0011122222321 23445566666666665 79999999999987 357889999999999999999999 997
Q ss_pred CCCcccHHHHHHHHHHHHHHHhC
Q 004735 693 FRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 693 ~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+. ...+.++.+++||.++++
T Consensus 238 ~~---~~~~~~~~~~~~l~~~l~ 257 (263)
T 2uz0_A 238 WY---YWEKQLEVFLTTLPIDFK 257 (263)
T ss_dssp HH---HHHHHHHHHHHHSSSCCC
T ss_pred HH---HHHHHHHHHHHHHHhhcc
Confidence 53 345677888999988876
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-19 Score=177.49 Aligned_cols=216 Identities=15% Similarity=0.093 Sum_probs=152.7
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-----ccHHHHHHHHC----CCEEEE
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-----LNLSIQYWTSR----GWAFVD 529 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-----~~~~~~~l~~~----G~~v~~ 529 (732)
.+.+.+++.+...|..+.+.+|.|++.. +.++.|+||++||++.....+. +...++.|+++ ||.|+.
T Consensus 30 g~~~~~~~~s~~~~~~~~~~v~~P~~~~----~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~ 105 (268)
T 1jjf_A 30 GQVVNISYFSTATNSTRPARVYLPPGYS----KDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVT 105 (268)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECTTCC----TTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEE
T ss_pred ceEEEEEEeccccCCceEEEEEeCCCCC----CCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEE
Confidence 4556777876546889999999998632 2467899999999865433222 22346667776 599999
Q ss_pred EcCCCCCCC-ChhhHHhhccCCCcccHHH-HHHHHHHHHhcCCC--CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEee
Q 004735 530 VNYGGSTGY-GREFRERLLGRWGIVDVND-CCSCATFLVGSGKA--DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASL 604 (732)
Q Consensus 530 ~d~rG~~g~-g~~~~~~~~~~~~~~~~~D-~~~~i~~l~~~~~~--d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~ 604 (732)
+|+++.+.. ...+.. ..++ +.++++++.++..+ |+++++|+|||+||++++.++. +|++|++++++
T Consensus 106 ~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 176 (268)
T 1jjf_A 106 PNTNAAGPGIADGYEN---------FTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPI 176 (268)
T ss_dssp ECCCCCCTTCSCHHHH---------HHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEE
T ss_pred eCCCCCCccccccHHH---------HHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEe
Confidence 999975421 111110 1233 45667777766555 7899999999999999999988 99999999999
Q ss_pred cCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCC-CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEE
Q 004735 605 YGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC-PIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 683 (732)
Q Consensus 605 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~-P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (732)
+|..++.... ..+.+... ...... |+|++||++|.+++. ++++++.|++.|.++++
T Consensus 177 s~~~~~~~~~------------~~~~~~~~---------~~~~~~pp~li~~G~~D~~v~~--~~~~~~~l~~~g~~~~~ 233 (268)
T 1jjf_A 177 SAAPNTYPNE------------RLFPDGGK---------AAREKLKLLFIACGTNDSLIGF--GQRVHEYCVANNINHVY 233 (268)
T ss_dssp SCCTTSCCHH------------HHCTTTTH---------HHHHHCSEEEEEEETTCTTHHH--HHHHHHHHHHTTCCCEE
T ss_pred CCCCCCCchh------------hhcCcchh---------hhhhcCceEEEEecCCCCCccH--HHHHHHHHHHCCCceEE
Confidence 9976542110 01110000 001124 499999999998874 77899999999999999
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 684 VEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 684 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
+++++++|.+. .....+..+++||.+.
T Consensus 234 ~~~~g~~H~~~---~~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 234 WLIQGGGHDFN---VWKPGLWNFLQMADEA 260 (268)
T ss_dssp EEETTCCSSHH---HHHHHHHHHHHHHHHH
T ss_pred EEcCCCCcCHh---HHHHHHHHHHHHHHhc
Confidence 99999999863 3456678889999876
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=178.33 Aligned_cols=210 Identities=13% Similarity=0.076 Sum_probs=147.9
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC-ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-GREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~-g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
..|.||++||.+.. ...+...++.|+++||.|+++|+||.+.. +...... ..+ ....+|+.++++++..+
T Consensus 21 ~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~--~~~-~~~~~d~~~~i~~l~~~---- 91 (251)
T 3dkr_A 21 TDTGVVLLHAYTGS--PNDMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTK--GNP-DIWWAESSAAVAHMTAK---- 91 (251)
T ss_dssp SSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHH--CCH-HHHHHHHHHHHHHHHTT----
T ss_pred CCceEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCc--ccH-HHHHHHHHHHHHHHHHh----
Confidence 45889999997443 34667788999999999999999987655 2221111 010 01267888889998876
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH--HHhhcchhhhhhhhhhcCC-------------hhhhh
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--LRAETHKFESRYIDNLVGS-------------EKDYY 636 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~-------------~~~~~ 636 (732)
.++++++|||+||++++.++. +|++++++++.+|...... .... ..+..........+ ...+.
T Consensus 92 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (251)
T 3dkr_A 92 YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGF-LKYAEYMNRLAGKSDESTQILAYLPGQLAAID 170 (251)
T ss_dssp CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHH-HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHH-HHHHHHHHhhcccCcchhhHHhhhHHHHHHHH
Confidence 579999999999999999998 8999999999998865321 1100 01100000000000 00000
Q ss_pred h--cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 637 E--KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 637 ~--~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
. ......+.++++|+|+++|++|.+++++.+.++++.+... .+++++++++++|.+.......++.+.+.+||++..
T Consensus 171 ~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~~ 249 (251)
T 3dkr_A 171 QFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVIAFMQQEN 249 (251)
T ss_dssp HHHHHHHHTGGGCCSCEEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccccCCCEEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhHHHHHHHHHHHhhc
Confidence 0 0123446778899999999999999999999999988764 467999999999987665568889999999998754
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-19 Score=205.24 Aligned_cols=310 Identities=10% Similarity=0.065 Sum_probs=201.4
Q ss_pred cCCHHHHhccC--CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE-
Q 004735 78 PLTADVVSGAS--KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF- 153 (732)
Q Consensus 78 ~~~~~~i~~~~--~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~- 153 (732)
++|++.++... .....++|+| | .+.+.. .++. ++.++..+| +.+.++... .. ...+...++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~~~----~d~~--i~~~~~~~g-~~~~~~~~~-~~----~~~~~~~~~~Sp 69 (719)
T 1z68_A 3 ALTLKDILNGTFSYKTFFPNWISGQ-EYLHQS----ADNN--IVLYNIETG-QSYTILSNR-TM----KSVNASNYGLSP 69 (719)
T ss_dssp CCCHHHHHHTTTCCCCCCCEESSSS-EEEEEC----TTSC--EEEEESSSC-CEEEEECHH-HH----HTTTCSEEEECT
T ss_pred cccHHHHhcCcccCCCCccEECCCC-eEEEEc----CCCC--EEEEEcCCC-cEEEEEccc-cc----cccceeeEEECC
Confidence 58888888762 2235899999 6 444433 1344 445555543 455454321 00 01123445554
Q ss_pred -CCEEEEEeCC--------CCeEEEEeCCCCCCCc---eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCcee
Q 004735 154 -GDTVIFSNYK--------DQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT 221 (732)
Q Consensus 154 -~~~i~f~~~~--------~~~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~ 221 (732)
+..|+|.... ++.||++|+++ ++. ++|+.. ...++|||||++|+|+.+ .
T Consensus 70 Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~~l~~~-------~~~~~~SPDG~~la~~~~----------~ 130 (719)
T 1z68_A 70 DRQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGNELPRP-------IQYLCWSPVGSKLAYVYQ----------N 130 (719)
T ss_dssp TSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCCSS-------BCCEEECSSTTCEEEEET----------T
T ss_pred CCCeEEEEecCceeEEeecceEEEEEECCC--CccccceecCcc-------cccceECCCCCEEEEEEC----------C
Confidence 5578887642 36899999997 666 555422 367899999999999854 5
Q ss_pred EEEEEEcCCCCccccEEcccCCC-------------------ceeccccCCCCCeEEEEeccCCCC--------------
Q 004735 222 EIVAIALNGQNIQEPKVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPNM-------------- 268 (732)
Q Consensus 222 ~l~~~d~~~~~~~~~~~lt~~~~-------------------~~~~p~~SPDG~~la~~~~~~~~~-------------- 268 (732)
+|+++++++++ .++++.... ....+.|||||++|||.+.+....
T Consensus 131 ~i~~~~~~~g~---~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~ 207 (719)
T 1z68_A 131 NIYLKQRPGDP---PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYP 207 (719)
T ss_dssp EEEEESSTTSC---CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSC
T ss_pred eEEEEeCCCCC---cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence 89999999988 778763321 114789999999999998654321
Q ss_pred ------------CCCccEEEEEEecCCCcee-eeEE-----ecCCCCCccccCcCceeCCCCcEEEE-EeccCCeeeEEE
Q 004735 269 ------------PWDKAELWVGYISENGDVY-KRVC-----VAGFDPTIVESPTEPKWSSKGELFFV-TDRKNGFWNLHK 329 (732)
Q Consensus 269 ------------~~~~~~l~v~d~~~~g~~~-~~~~-----~~~~~~~~~~~~~~~~wspDg~l~~~-~~~~~g~~~l~~ 329 (732)
.....+|+++|++ +++.. ...+ +.+.. ..+..+.|||||++++. .++.++...|++
T Consensus 208 ~~~~~~yp~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~ 282 (719)
T 1z68_A 208 RTINIPYPKAGAKNPVVRIFIIDTT-YPAYVGPQEVPVPAMIASSD----YYFSWLTWVTDERVCLQWLKRVQNVSVLSI 282 (719)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEESS-CHHHHCCEECCCCHHHHTSC----EEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred cceeecCCCCCCCCCeeEEEEEECC-CCCccceeEccCCccCCCCc----ceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence 1134479999998 66531 0111 12233 56778999999885554 344345678999
Q ss_pred Ee----ccCCeEEEecc----c-ccccC-----CCceeecccceeeeeecCCCCEEEE-EEEECCEEEEEEEECCCCceE
Q 004735 330 WI----ESNNEVLAIYS----L-DAEFS-----RPLWVFGINSYEIIQSHGEKNLIAC-SYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 330 ~d----~~~g~~~~l~~----~-~~~~~-----~~~w~~~~~~~~~~~~~~~~~~l~~-~s~~~g~~~ly~~~~~~~~~~ 394 (732)
+| +.+++.+.++. . ...+. .+.|++ +++.|++ .+.++|..+||++++++++.+
T Consensus 283 ~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------------dg~~l~~~~~~~~g~~~l~~~~~~~~~~~ 350 (719)
T 1z68_A 283 CDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY------------DAISYYKIFSDKDGYKHIHYIKDTVENAI 350 (719)
T ss_dssp EEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT------------TSSCEEEEEECTTSCEEEEEESSCSTTCE
T ss_pred EcccCCCCCCceEEEEecccccCCceEccccCCccEECC------------CCCeEEEEEEccCCceEEEEEECCCCceE
Confidence 99 88888777763 1 11222 455654 7777776 466788899999999999999
Q ss_pred EeccCCCceEEe-eEeCCEEEEEEeCC----CCCcEEEEEEcCCC--cceeee
Q 004735 395 LLDIPFTDIDNI-TLGNDCLFVEGASG----VEPSSVAKVTLDDH--KLKAVD 440 (732)
Q Consensus 395 ~lt~~~~~v~~~-~~~~~~~~~~~~~~----~~~~~ly~~dl~~~--~~~~lt 440 (732)
+|+.+.+.+..+ ..+++.+++.+ +. .....||.++++++ +.+.|+
T Consensus 351 ~lt~~~~~v~~~~~~d~~~i~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~l~ 402 (719)
T 1z68_A 351 QITSGKWEAINIFRVTQDSLFYSS-NEFEEYPGRRNIYRISIGSYPPSKKCVT 402 (719)
T ss_dssp ECSCSSSCEEEEEEECSSEEEEEE-SCGGGCTTCBEEEEEECSSSSCCEEESS
T ss_pred ecccCceEEEEEEEEeCCEEEEEE-ecCCCCCceEEEEEEeCCCCCCCceecc
Confidence 999888777665 23555555544 44 34567999998766 334444
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-19 Score=183.62 Aligned_cols=250 Identities=13% Similarity=0.130 Sum_probs=165.2
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---HHHHHHHCCCEEEEEcCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~rG~~ 536 (732)
+.+.+++.+...+.++.++ +.|. .++.|+||++||++.......|.. ..+.+++.|+.|+++|++++.
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~~p~--------~~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~ 78 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-FQSG--------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSS 78 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECC--------STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTC
T ss_pred eEEEEEEECccCCCceEEE-ECCC--------CCCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCc
Confidence 4577888776457788877 5453 245799999999853222333332 346677789999999998754
Q ss_pred CCChhhHHh-hccCCCcccHHHH--HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH
Q 004735 537 GYGREFRER-LLGRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM 612 (732)
Q Consensus 537 g~g~~~~~~-~~~~~~~~~~~D~--~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~ 612 (732)
.+....... ..+..+....++. .+++.++.++..+++++++|+|+||||++++.++. +|++|+++++++|..++..
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~ 158 (304)
T 1sfr_A 79 FYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQ 158 (304)
T ss_dssp TTCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTS
T ss_pred cccccCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccc
Confidence 432110000 0000001223332 24455555545577789999999999999999988 9999999999999876542
Q ss_pred HH--hhcc----hhhhhhhhhhcC--ChhhhhhcCccccCCCC---CCCEEEEEeCCCC--------------ccChHHH
Q 004735 613 LR--AETH----KFESRYIDNLVG--SEKDYYEKSPINFVDKF---SCPIILFQGLEDK--------------VVPPDQA 667 (732)
Q Consensus 613 ~~--~~~~----~~~~~~~~~~~~--~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~--------------~v~~~~~ 667 (732)
.. .... ......+...++ ....+...+|...+.++ .+|+++++|++|+ .++..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~ 238 (304)
T 1sfr_A 159 AMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSN 238 (304)
T ss_dssp TTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHH
T ss_pred cchhhhhhHhhhhccccchHHhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHHHHHH
Confidence 10 0000 000000112222 13456677777665555 5899999999998 6788999
Q ss_pred HHHHHHHHhCC-CCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCCCCCC
Q 004735 668 RKIYKALKENG-LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVAD 721 (732)
Q Consensus 668 ~~~~~~l~~~g-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~ 721 (732)
+++++.|++.| ++++++++++++|.+ ..+...+..++.||.++|+..++..
T Consensus 239 ~~~~~~L~~~G~~~v~~~~~~~g~H~~---~~w~~~l~~~l~~l~~~l~~~~~~~ 290 (304)
T 1sfr_A 239 IKFQDAYNAGGGHNGVFDFPDSGTHSW---EYWGAQLNAMKPDLQRALGATPNTG 290 (304)
T ss_dssp HHHHHHHHHTTCCSEEEECCSCCCSSH---HHHHHHHHHTHHHHHHHHTCCCC--
T ss_pred HHHHHHHHhCCCCceEEEecCCCccCH---HHHHHHHHHHHHHHHHhcCCCcccC
Confidence 99999999999 999999998779975 3456777889999999998544433
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-18 Score=185.76 Aligned_cols=256 Identities=11% Similarity=0.068 Sum_probs=183.5
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCce--eEEECCEEEEEeCCC--CeEEEEeCCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGA--FRIFGDTVIFSNYKD--QRLYKHSIDS 174 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~--~~~~~~~i~f~~~~~--~~l~~~d~~~ 174 (732)
+++++|+.....+.....|+.++..+ +..+.+.... ....+ |++++..|++..... ..|+++|+.+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~---------~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t 212 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSP---------QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN 212 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEES---------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCC---------CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC
Confidence 77888887654322124555555542 2344443211 11223 334455788887543 4899999998
Q ss_pred CCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCC
Q 004735 175 KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPR 254 (732)
Q Consensus 175 ~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPD 254 (732)
++.++++.. ......++|||||++|+|+....+ ..+||++|+.+++ .++++........+.||||
T Consensus 213 --g~~~~l~~~----~~~~~~~~~spdg~~la~~~~~~g------~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 213 --GAVRQVASF----PRHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp --CCEEEEECC----SSCEEEEEECTTSSEEEEEECTTS------SCEEEEEETTTCC---EEECCCCSSCEEEEEECTT
T ss_pred --CcEEEeecC----CCcccCEEEcCCCCEEEEEEecCC------CceEEEEECCCCC---EEeCcCCCCcccceEECCC
Confidence 777777755 234567899999999988865432 2589999999988 8888877677788999999
Q ss_pred CCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEecc
Q 004735 255 GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 255 G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~ 333 (732)
|++|+|.+.+. ...+||++|++ +|+. ..+.... ..+..+.|||||+ |++.+.. .+...|+++|++
T Consensus 278 g~~l~~~s~~~-----g~~~i~~~d~~-~~~~---~~l~~~~----~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~ 343 (415)
T 2hqs_A 278 SQNLAFTSDQA-----GRPQVYKVNIN-GGAP---QRITWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLA 343 (415)
T ss_dssp SSEEEEEECTT-----SSCEEEEEETT-SSCC---EECCCSS----SEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETT
T ss_pred CCEEEEEECCC-----CCcEEEEEECC-CCCE---EEEecCC----CcccCeEECCCCCEEEEEECc-CCceEEEEEECC
Confidence 99999988332 24579999998 6664 2233332 4456789999999 7777766 667889999999
Q ss_pred CCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe
Q 004735 334 NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI 406 (732)
Q Consensus 334 ~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~ 406 (732)
+++.+.++... ....+.|++ +++.|++.+...+...||+++++++..++|+.....+.++
T Consensus 344 ~~~~~~l~~~~-~~~~~~~sp------------dg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~ 403 (415)
T 2hqs_A 344 TGGVQVLSSTF-LDETPSLAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP 403 (415)
T ss_dssp TCCEEECCCSS-SCEEEEECT------------TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEE
T ss_pred CCCEEEecCCC-CcCCeEEcC------------CCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCC
Confidence 99888776442 444556665 8889999998888899999999999999998877777665
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=176.78 Aligned_cols=189 Identities=15% Similarity=0.055 Sum_probs=139.8
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEE-------------------cCCCCCCCChhhHHhhccCCCc
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV-------------------NYGGSTGYGREFRERLLGRWGI 552 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~-------------------d~rG~~g~g~~~~~~~~~~~~~ 552 (732)
.++.|+||++||++.. ...+......|+++||.|+++ |++|............ .
T Consensus 20 ~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~~~~~~~~-----~ 92 (232)
T 1fj2_A 20 RKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGI-----K 92 (232)
T ss_dssp SCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHH-----H
T ss_pred CCCCceEEEEecCCCc--cchHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccCCcccccccHHH-----H
Confidence 4567999999998543 334555667777789999998 5554311110000000 0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCC
Q 004735 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 631 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 631 (732)
...+|+.++++++.+ ..+|.++++++|||+||++++.++. +|++++++++++|..+.....
T Consensus 93 ~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~----------------- 154 (232)
T 1fj2_A 93 QAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF----------------- 154 (232)
T ss_dssp HHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS-----------------
T ss_pred HHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCccc-----------------
Confidence 125667777777766 5678899999999999999999998 899999999999986543210
Q ss_pred hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCC--EEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 632 EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP--VALVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 632 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
......+..+++|+|+++|++|.+++++.++++++.+++.+.+ ++++++++++|.+. .+..+.+.+|
T Consensus 155 ------~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~H~~~-----~~~~~~i~~~ 223 (232)
T 1fj2_A 155 ------PQGPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQEMMDVKQF 223 (232)
T ss_dssp ------CSSCCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHHHHHHHHH
T ss_pred ------cccccccccCCCCEEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCcccC-----HHHHHHHHHH
Confidence 0011235667899999999999999999999999999988754 99999999999873 3455899999
Q ss_pred HHHHhCC
Q 004735 710 FARVVGH 716 (732)
Q Consensus 710 l~~~l~~ 716 (732)
|+++++.
T Consensus 224 l~~~l~~ 230 (232)
T 1fj2_A 224 IDKLLPP 230 (232)
T ss_dssp HHHHSCC
T ss_pred HHHhcCC
Confidence 9999873
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=187.35 Aligned_cols=228 Identities=19% Similarity=0.246 Sum_probs=158.6
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCc-cCCcccHHHHHHH-HCCCEEEEEcCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWT-SRGWAFVDVNYGGSTG 537 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~-~~~~~~~~~~~l~-~~G~~v~~~d~rG~~g 537 (732)
..+.+.+++. +| .+.+.+| +. .++.|+||++||+++.. ....+......|+ ..||.|+++||||.+.
T Consensus 55 ~~~~~~i~~~-~g-~i~~~~y-~~--------~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~ 123 (311)
T 1jji_A 55 RVEDRTIKGR-NG-DIRVRVY-QQ--------KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPE 123 (311)
T ss_dssp EEEEEEEEET-TE-EEEEEEE-ES--------SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTT
T ss_pred eEEEEEecCC-CC-cEEEEEE-cC--------CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 4678888886 66 8888888 42 34569999999986432 2234556777787 5799999999998775
Q ss_pred CChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-CCCc----ceEEEeecCcCC
Q 004735 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-FRDT----FKAGASLYGVAD 609 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~----~~a~v~~~~~~d 609 (732)
+... ...+|+.++++++.+. ..+|+++|+|+|||+||++++.++. ++++ ++++++++|..+
T Consensus 124 ~~~p-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~ 192 (311)
T 1jji_A 124 HKFP-----------AAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVN 192 (311)
T ss_dssp SCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCC
T ss_pred CCCC-----------CcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccC
Confidence 4321 2367888888888775 3467789999999999999998887 5554 999999999876
Q ss_pred HHHHHhhc-----------chhhhhhhhhhcCChh--hhhhcCccc-cCCCCCCCEEEEEeCCCCccChHHHHHHHHHHH
Q 004735 610 LSMLRAET-----------HKFESRYIDNLVGSEK--DYYEKSPIN-FVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 675 (732)
Q Consensus 610 ~~~~~~~~-----------~~~~~~~~~~~~~~~~--~~~~~sp~~-~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~ 675 (732)
........ ......+...+++... .....+|+. .+..+ +|+|+++|++|.++ .++..+.+.|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~--~~~~~~~~~l~ 269 (311)
T 1jji_A 193 FVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENL-PPALIITAEYDPLR--DEGEVFGQMLR 269 (311)
T ss_dssp SSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTC-CCEEEEEEEECTTH--HHHHHHHHHHH
T ss_pred CCCCCccHHHhcCCCccCCHHHHHHHHHHhCCCCccCCCcccCcccccccCC-ChheEEEcCcCcch--HHHHHHHHHHH
Confidence 53211000 0001111222222111 111234443 22232 69999999999986 46788999999
Q ss_pred hCCCCEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHH
Q 004735 676 ENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFAR 712 (732)
Q Consensus 676 ~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~ 712 (732)
+.|++++++++++++|+|.. .+...++++.+.+||++
T Consensus 270 ~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 270 RAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HcCCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 99999999999999998743 24556778888888864
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=182.10 Aligned_cols=191 Identities=20% Similarity=0.159 Sum_probs=138.7
Q ss_pred CCCCCCEEEEEcCCCCCccCCcccHHHHHHHHC--CCEEEEEcCC---CCCCCChhhHHh--hccCCCc-------ccHH
Q 004735 491 PEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYG---GSTGYGREFRER--LLGRWGI-------VDVN 556 (732)
Q Consensus 491 ~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~r---G~~g~g~~~~~~--~~~~~~~-------~~~~ 556 (732)
++++.|+||++||.+. ....+...++.|..+ ++.+++|+-+ ...+.|..|.+. ....... ...+
T Consensus 62 ~~~~~plVI~LHG~G~--~~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~~~~~~~~~~ 139 (285)
T 4fhz_A 62 PGEATSLVVFLHGYGA--DGADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAAAEGMAAAAR 139 (285)
T ss_dssp TTCCSEEEEEECCTTB--CHHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCC--CHHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchhhHHHHHHHH
Confidence 3677899999999632 233344455666654 8889988732 112334433110 0000000 1134
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhh
Q 004735 557 DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY 635 (732)
Q Consensus 557 D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (732)
++.+.++.+.++..+|++||+|+|+|+||++++.++. +|++++++|+++|........
T Consensus 140 ~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~~~~~--------------------- 198 (285)
T 4fhz_A 140 DLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLAPERL--------------------- 198 (285)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSCHHHH---------------------
T ss_pred HHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccCchhh---------------------
Confidence 5666777777777899999999999999999999988 999999999999864321100
Q ss_pred hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 636 YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 636 ~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
. .....++|+|++||++|++||++.++++++.|++.|.++++++|++.||++. .+.++.+.+||+++|-
T Consensus 199 ~------~~~~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~g~gH~i~-----~~~l~~~~~fL~~~Lp 267 (285)
T 4fhz_A 199 A------EEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGIA-----PDGLSVALAFLKERLP 267 (285)
T ss_dssp H------HHCCCCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHHHHCC
T ss_pred h------hhhhhcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-----HHHHHHHHHHHHHHCc
Confidence 0 0113468999999999999999999999999999999999999999999874 3567889999999994
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.7e-19 Score=170.36 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=134.5
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH-----h-hccCC----CcccHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE-----R-LLGRW----GIVDVNDCCSC 561 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~-----~-~~~~~----~~~~~~D~~~~ 561 (732)
..+.| ||++||.+. ....+....+.|+ .++.|+++|.++..+.+..|.. . ..... -....+++.+.
T Consensus 14 ~~~~p-vv~lHG~g~--~~~~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~ 89 (209)
T 3og9_A 14 KDLAP-LLLLHSTGG--DEHQLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTDE 89 (209)
T ss_dssp TTSCC-EEEECCTTC--CTTTTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEEeCCCC--CHHHHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHHHHHHHHHHH
Confidence 34568 999999743 3445666777776 7999999995422111111111 0 00000 01225566677
Q ss_pred HHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCc
Q 004735 562 ATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSP 640 (732)
Q Consensus 562 i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 640 (732)
++.+.++..+|+++++|+|||+||++++.++. +|++++++++++|..... +
T Consensus 90 ~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~----------------------------~ 141 (209)
T 3og9_A 90 VSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLED----------------------------F 141 (209)
T ss_dssp HHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCC----------------------------C
T ss_pred HHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCc----------------------------c
Confidence 77777777788899999999999999999988 999999999999865411 0
Q ss_pred cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 641 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 641 ~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
........+|+|++||++|.++|+++++++++.+++.+.++++++++ ++|.+. .+..+.+.+||++.
T Consensus 142 ~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~-----~~~~~~~~~~l~~~ 208 (209)
T 3og9_A 142 EQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESS-LGHQLT-----QEEVLAAKKWLTET 208 (209)
T ss_dssp CCCCCCTTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTCEEEEEECS-STTSCC-----HHHHHHHHHHHHHH
T ss_pred cccccccCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCCceEEEEcC-CCCcCC-----HHHHHHHHHHHHhh
Confidence 11133467899999999999999999999999999999999999998 799874 35578888998864
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=187.14 Aligned_cols=218 Identities=12% Similarity=0.108 Sum_probs=149.2
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCc-cCCcccHHHHHHH-HCCCEEEEEcCCCCCCCChhhHHhhccCCCc
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE-ARGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGI 552 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~-~~~~~~~~~~~l~-~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~ 552 (732)
+.++++.|.+ ++.|+||++|||++.. ....+...+..|+ +.||.|+++||||++.....
T Consensus 84 ~~~~~~~p~~--------~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~~~----------- 144 (326)
T 3d7r_A 84 MQVFRFNFRH--------QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHID----------- 144 (326)
T ss_dssp EEEEEEESTT--------CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSCHH-----------
T ss_pred EEEEEEeeCC--------CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCCch-----------
Confidence 5556677753 3458999999986433 2233444566666 45999999999987653321
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCc----ceEEEeecCcCCHHHHHhhcc-hh------
Q 004735 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDT----FKAGASLYGVADLSMLRAETH-KF------ 620 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~----~~a~v~~~~~~d~~~~~~~~~-~~------ 620 (732)
..++|+.++++++.++ ++.++++|+|||+||++++.++. +|++ ++++|+.+|..+......... ..
T Consensus 145 ~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~ 222 (326)
T 3d7r_A 145 DTFQAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDALIEQDAV 222 (326)
T ss_dssp HHHHHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCCHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHHhhhcccCcc
Confidence 2368999999999887 67889999999999999999987 6665 999999999876532110000 00
Q ss_pred -----hhhhhhhhcCC-hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004735 621 -----ESRYIDNLVGS-EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 694 (732)
Q Consensus 621 -----~~~~~~~~~~~-~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 694 (732)
...+...+.+. .......+|+...-...+|+|+++|++|. ...++..+.+.+++.+.+++++++++++|.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~--~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~ 300 (326)
T 3d7r_A 223 LSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREM--THPDMKLFEQMMLQHHQYIEFYDYPKMVHDFP 300 (326)
T ss_dssp CCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTST--THHHHHHHHHHHHHTTCCEEEEEETTCCTTGG
T ss_pred cCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCccc--chHHHHHHHHHHHHCCCcEEEEEeCCCccccc
Confidence 00011111110 00111223333211223699999999996 45677889999999999999999999999875
Q ss_pred C--cccHHHHHHHHHHHHHHHhC
Q 004735 695 K--AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 695 ~--~~~~~~~~~~~~~fl~~~l~ 715 (732)
. .+...++.+.+.+||++++.
T Consensus 301 ~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 301 IYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp GSSSHHHHHHHHHHHHHHTSCCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHhh
Confidence 4 35667888999999987765
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-19 Score=194.63 Aligned_cols=251 Identities=12% Similarity=0.126 Sum_probs=174.3
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-----------------cc----cHH
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----------------IL----NLS 516 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-----------------~~----~~~ 516 (732)
+...+.+.++.. ||.++.+.+|.|++ .++.|+||+.||.+...... .+ ...
T Consensus 38 ~~~~~~v~i~~~-DG~~L~a~l~~P~~-------~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 109 (560)
T 3iii_A 38 MIMEKDGTVEMR-DGEKLYINIFRPNK-------DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPD 109 (560)
T ss_dssp EEEEEEEEEECT-TSCEEEEEEEECSS-------SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCC
T ss_pred eEEEEEEEEECC-CCcEEEEEEEecCC-------CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCC
Confidence 334577899998 99999999999976 46789999999864432100 00 013
Q ss_pred HHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CC
Q 004735 517 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR 595 (732)
Q Consensus 517 ~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p 595 (732)
++.|+++||+|+.+|+||+++++..+. .++..+.+|+.++++|+.+++.++ .||+++|+|+||++++.+++ +|
T Consensus 110 ~~~la~~Gy~vv~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p 183 (560)
T 3iii_A 110 PGFWVPNDYVVVKVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNP 183 (560)
T ss_dssp HHHHGGGTCEEEEEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCEEEEEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCC
Confidence 688999999999999999988765543 234456899999999999987777 89999999999999999988 88
Q ss_pred CcceEEEeecCcCCHHHHHh---hcc--hhhhhh-----------------hhhhcC---ChhhhhhcCccccCCCCCCC
Q 004735 596 DTFKAGASLYGVADLSMLRA---ETH--KFESRY-----------------IDNLVG---SEKDYYEKSPINFVDKFSCP 650 (732)
Q Consensus 596 ~~~~a~v~~~~~~d~~~~~~---~~~--~~~~~~-----------------~~~~~~---~~~~~~~~sp~~~~~~i~~P 650 (732)
+.++|+|+.+|+.|+..-.. ... .+...+ ...+.. ..+.|...++ .+++|++|
T Consensus 184 ~~l~aiv~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d~~W~~~~~--~~~~I~vP 261 (560)
T 3iii_A 184 PHLKAMIPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQV--PLSQIKTP 261 (560)
T ss_dssp TTEEEEEEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSCHHHHTTBC--CGGGCCSC
T ss_pred CceEEEEecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcchHhhccCC--chhhCCCC
Confidence 99999999999998653100 000 000000 000000 1134555554 57899999
Q ss_pred EEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCCCCC-CCCCccccc
Q 004735 651 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVA-DEIIPIKID 729 (732)
Q Consensus 651 ~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~-~~~~~~~~~ 729 (732)
+|+++|-.|..+....+.+.+++++..+ ..+++.. .+|.- .......++.+++||+++|++..+. +..|++.+.
T Consensus 262 vl~v~Gw~D~~~~~~g~l~~y~~l~~~~--k~l~ih~-~~~~~--~~~~~~~~~~~~~wfD~~LkG~~ng~~~~p~V~~~ 336 (560)
T 3iii_A 262 LLTCASWSTQGLHNRGSFEGFKQAASEE--KWLYVHG-RKEWE--SYYARENLERQKSFFDFYLKEENNDWKDTPHVIYE 336 (560)
T ss_dssp EEEEEEGGGTTTTHHHHHHHHHHCCCSS--EEEEEES-SCHHH--HHHSHHHHHHHHHHHHHHTSCCCCSGGGSCSEEEE
T ss_pred EEEeCCcCCCcccchhHHHHHHhccccC--cEEEECC-CCCcC--cccChhHHHHHHHHHHHHhCCCCCCCCCCCcEEEE
Confidence 9999999997566677777777776432 2444422 23321 0011345678899999999976654 456777654
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=178.97 Aligned_cols=232 Identities=13% Similarity=0.109 Sum_probs=150.3
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
..+.+.+.. +|..+...++.+.. .....|+||++||++.. ...|...+..|+++||.|+++|+||.+...
T Consensus 19 ~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~ 88 (315)
T 4f0j_A 19 PVHYLDFTS--QGQPLSMAYLDVAP------KKANGRTILLMHGKNFC--AGTWERTIDVLADAGYRVIAVDQVGFCKSS 88 (315)
T ss_dssp CCEEEEEEE--TTEEEEEEEEEECC------SSCCSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSC
T ss_pred cceeEEEec--CCCCeeEEEeecCC------CCCCCCeEEEEcCCCCc--chHHHHHHHHHHHCCCeEEEeecCCCCCCC
Confidence 456677766 57776655554432 13556999999998543 345778889999999999999999876543
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH------
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM------ 612 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~------ 612 (732)
... ......+++.+.+..+++.. +.++++|+|||+||++++.++. +|++++++|+.+|......
T Consensus 89 ~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 159 (315)
T 4f0j_A 89 KPA-------HYQYSFQQLAANTHALLERL--GVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVP 159 (315)
T ss_dssp CCS-------SCCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCC
T ss_pred CCC-------ccccCHHHHHHHHHHHHHHh--CCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccch
Confidence 210 11245777777777777763 4569999999999999999998 9999999999998642111
Q ss_pred ------HHhhc----chhhhhhhhhhc--------------------CC-------------hhhhhhcCccccCCCCCC
Q 004735 613 ------LRAET----HKFESRYIDNLV--------------------GS-------------EKDYYEKSPINFVDKFSC 649 (732)
Q Consensus 613 ------~~~~~----~~~~~~~~~~~~--------------------~~-------------~~~~~~~sp~~~~~~i~~ 649 (732)
+.... ......+..... .. .......+....+.++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (315)
T 4f0j_A 160 WRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQM 239 (315)
T ss_dssp CCCHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGCCS
T ss_pred hhhhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccCCC
Confidence 00000 000000000000 00 001112233445778899
Q ss_pred CEEEEEeCCCCccChHHH------------HHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 650 PIILFQGLEDKVVPPDQA------------RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~------------~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
|+|+++|++|.++|..+. .+..+.+.+...++++++++++||.+. .++..++.+.+.+||+
T Consensus 240 P~lii~G~~D~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl~ 312 (315)
T 4f0j_A 240 PTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQ-IQAPERFHQALLEGLQ 312 (315)
T ss_dssp CEEEEEETTCCCCTTGGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCHH-HHSHHHHHHHHHHHHC
T ss_pred CeEEEEecCCCcCccccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcchh-hhCHHHHHHHHHHHhc
Confidence 999999999999993322 333344444445789999999999643 3455667777777764
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=187.98 Aligned_cols=231 Identities=13% Similarity=0.041 Sum_probs=158.9
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
..+.+.++. +|..++++++.|.+ .++.|+||++||++... ...+......++++||.|+++|+||.+...
T Consensus 167 ~~~~v~i~~--~g~~l~~~~~~P~~-------~~~~P~vv~~hG~~~~~-~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~ 236 (415)
T 3mve_A 167 IIKQLEIPF--EKGKITAHLHLTNT-------DKPHPVVIVSAGLDSLQ-TDMWRLFRDHLAKHDIAMLTVDMPSVGYSS 236 (415)
T ss_dssp EEEEEEEEC--SSSEEEEEEEESCS-------SSCEEEEEEECCTTSCG-GGGHHHHHHTTGGGTCEEEEECCTTSGGGT
T ss_pred CeEEEEEEE--CCEEEEEEEEecCC-------CCCCCEEEEECCCCccH-HHHHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence 356778876 68899999999975 45679999999974332 233344567788899999999999765432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH----H
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML----R 614 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~----~ 614 (732)
. .....+ ......++++++.....+|.++|+|+|||+||++++.++. +|++++++|+.+|..+.... .
T Consensus 237 ~---~~~~~~----~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~ 309 (415)
T 3mve_A 237 K---YPLTED----YSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKL 309 (415)
T ss_dssp T---SCCCSC----TTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHH
T ss_pred C---CCCCCC----HHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHH
Confidence 1 111111 1233467788888887788899999999999999999998 89999999999998653211 1
Q ss_pred hhcchhhhhhhhhhcC----Chh----hhhhcCcccc----CCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEE
Q 004735 615 AETHKFESRYIDNLVG----SEK----DYYEKSPINF----VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 682 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~----~~~----~~~~~sp~~~----~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (732)
..........+...++ ... .+...++... +.++++|+|+++|++|.++|++++..+.+ .+.+++
T Consensus 310 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~l~~----~~~~~~ 385 (415)
T 3mve_A 310 QQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAF----FSTYGK 385 (415)
T ss_dssp TTSCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSCHHHHHHHHH----TBTTCE
T ss_pred HHhHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCCHHHHHHHHH----hCCCce
Confidence 1111111111111111 111 1222333222 45788999999999999999988887665 455779
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 683 LVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 683 ~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++++++..|. ....+.++.+.+||+++|+
T Consensus 386 l~~i~g~~~h----~~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 386 AKKISSKTIT----QGYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp EEEECCCSHH----HHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcc----cchHHHHHHHHHHHHHHhc
Confidence 9999983221 2557888999999999885
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=179.90 Aligned_cols=236 Identities=14% Similarity=0.165 Sum_probs=151.5
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCC-CCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGYG 539 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~-~g~g 539 (732)
++...+.+. +|.+++++.+.|.... .+..|+||++||.+ .....|...++.|+++||.|+++|+||. +.+.
T Consensus 7 ~~~~~i~~~-dG~~l~~~~~~p~~~~-----~~~~~~VvllHG~g--~~~~~~~~~~~~L~~~G~~Vi~~D~rGh~G~S~ 78 (305)
T 1tht_A 7 TIAHVLRVN-NGQELHVWETPPKENV-----PFKNNTILIASGFA--RRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSS 78 (305)
T ss_dssp CEEEEEEET-TTEEEEEEEECCCTTS-----CCCSCEEEEECTTC--GGGGGGHHHHHHHHTTTCCEEEECCCBCC----
T ss_pred ceEEEEEcC-CCCEEEEEEecCcccC-----CCCCCEEEEecCCc--cCchHHHHHHHHHHHCCCEEEEeeCCCCCCCCC
Confidence 456677776 8999999998875410 23468999999974 3345677888999999999999999976 3322
Q ss_pred hhhHHhhccCCCc-ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcc
Q 004735 540 REFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETH 618 (732)
Q Consensus 540 ~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~ 618 (732)
.. ...+.. ...+|+.++++++... +.++++++||||||.+++.++..| +++++|+.++..++........
T Consensus 79 ~~-----~~~~~~~~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~~-~v~~lvl~~~~~~~~~~~~~~~ 149 (305)
T 1tht_A 79 GS-----IDEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISDL-ELSFLITAVGVVNLRDTLEKAL 149 (305)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTTS-CCSEEEEESCCSCHHHHHHHHH
T ss_pred Cc-----ccceehHHHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCcc-CcCEEEEecCchhHHHHHHHHh
Confidence 11 111211 1257788888888743 346899999999999999998877 8999999888766543211100
Q ss_pred h--hhhhhhhhhc------C---Chhhhh----hc------CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 619 K--FESRYIDNLV------G---SEKDYY----EK------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 619 ~--~~~~~~~~~~------~---~~~~~~----~~------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
. +......... . ....+. .. +....+.++++|+|+++|++|.++|++.+.++++.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp~~~~~~l~~~i~~- 228 (305)
T 1tht_A 150 GFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT- 228 (305)
T ss_dssp SSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTT-
T ss_pred hhhhhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhcCC-
Confidence 0 0000000000 0 000010 00 12235678999999999999999999888887765532
Q ss_pred CCCEEEEEeCCCCccCCC-cccHHHHHHHHHHHHHHHhC
Q 004735 678 GLPVALVEYEGEQHGFRK-AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 678 g~~~~~~~~~~~gH~~~~-~~~~~~~~~~~~~fl~~~l~ 715 (732)
.++++++++++||.+.. ++...++++.+.+|......
T Consensus 229 -~~~~l~~i~~agH~~~e~p~~~~~fl~~~~~~~~~~~~ 266 (305)
T 1tht_A 229 -GHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIAMDG 266 (305)
T ss_dssp -CCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCcEEEEeCCCCCchhhCchHHHHHHHHHHHHHHHhCc
Confidence 25799999999998742 12233444555555554443
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=176.31 Aligned_cols=237 Identities=13% Similarity=0.132 Sum_probs=161.4
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---HHHHHHHCCCEEEEEcCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGS 535 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~rG~ 535 (732)
.+.+.+++.+...|..+.++ |.|.+ .|+||++||++.......|.. ..+.+++.|+.|+++|++++
T Consensus 9 ~~~~~~~~~S~~~~~~~~~~-~~P~~----------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~ 77 (280)
T 1r88_A 9 APYENLMVPSPSMGRDIPVA-FLAGG----------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAY 77 (280)
T ss_dssp CCCEEEEEEETTTTEEEEEE-EECCS----------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTT
T ss_pred CCEEEEEEECcccCCcceEE-EeCCC----------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCC
Confidence 35678888876468889888 77743 389999999843222233322 45667788999999999765
Q ss_pred CCCChhhHHhhccCCCcccHHH--HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH
Q 004735 536 TGYGREFRERLLGRWGIVDVND--CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM 612 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D--~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~ 612 (732)
+++.. +...... ...+ ..+.+.++.++..+++++++|+|+||||++++.++. +|++|+++++++|..++..
T Consensus 78 ~~~~~-~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~ 151 (280)
T 1r88_A 78 SMYTN-WEQDGSK-----QWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSN 151 (280)
T ss_dssp STTSB-CSSCTTC-----BHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTS
T ss_pred CccCC-CCCCCCC-----cHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCC
Confidence 44321 1000001 1211 123444555545678889999999999999999988 9999999999999987543
Q ss_pred HHhh--cc----hhhhhhhhhhcCCh--hhhhhcCccccCCCC---CCCEEEEE----eCCCCc-------cChHHHHHH
Q 004735 613 LRAE--TH----KFESRYIDNLVGSE--KDYYEKSPINFVDKF---SCPIILFQ----GLEDKV-------VPPDQARKI 670 (732)
Q Consensus 613 ~~~~--~~----~~~~~~~~~~~~~~--~~~~~~sp~~~~~~i---~~P~Lii~----G~~D~~-------v~~~~~~~~ 670 (732)
.... .. ..........++++ ..+...+|+..++++ .+|+++.| |++|.. ++..+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~ 231 (280)
T 1r88_A 152 TTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMF 231 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHH
T ss_pred ccchhhHHHHhhhccccchhhhcCCCchhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHHH
Confidence 2100 00 00000011222322 356667787666555 47999999 999983 588999999
Q ss_pred HHHHHhCC-CCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 671 YKALKENG-LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 671 ~~~l~~~g-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++.|++.| +++++.++++++|.+ ..+...+...+.|+.+-|+
T Consensus 232 ~~~L~~~g~~~~~~~~~~~g~H~~---~~w~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 232 YNQYRSVGGHNGHFDFPASGDNGW---GSWAPQLGAMSGDIVGAIR 274 (280)
T ss_dssp HHHHHHTTCCSEEEECCSSCCSSH---HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCcceEEEecCCCCcCh---hHHHHHHHHHHHHHHHHHh
Confidence 99999999 999999998889976 3556677778888887775
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-19 Score=177.09 Aligned_cols=207 Identities=19% Similarity=0.240 Sum_probs=146.2
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|+||++||.+.. ...+...++.|+++||.|+++|+||.+........ .. -....+|+.++++++.++ .+
T Consensus 40 ~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~---~~-~~~~~~d~~~~i~~l~~~----~~ 109 (270)
T 3rm3_A 40 PVGVLLVHGFTGT--PHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMER---TT-FHDWVASVEEGYGWLKQR----CQ 109 (270)
T ss_dssp SEEEEEECCTTCC--GGGTHHHHHHHHHTTCEEEECCCTTCSSCHHHHHT---CC-HHHHHHHHHHHHHHHHTT----CS
T ss_pred CeEEEEECCCCCC--hhHHHHHHHHHHHCCCEEEEeCCCCCCCCcccccc---CC-HHHHHHHHHHHHHHHHhh----CC
Confidence 4899999997443 34567788999999999999999977654322111 11 112267888888888765 57
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchh--hhhhhhhhcC---C----hhhhh--------
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF--ESRYIDNLVG---S----EKDYY-------- 636 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~--~~~~~~~~~~---~----~~~~~-------- 636 (732)
+++|+|||+||++++.++. +|+ ++++|+++|..+........... ...++..... . ...|.
T Consensus 110 ~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (270)
T 3rm3_A 110 TIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLL 188 (270)
T ss_dssp EEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCCCCCSEEEHHHHH
T ss_pred cEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHhhcccccChhHHH
Confidence 9999999999999999998 898 99999999987765443211110 0001000000 0 00000
Q ss_pred -----hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 637 -----EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 637 -----~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
.......+.++++|+|+++|++|.++++..+.++++.++. .+++++++++++|.+.......++.+.+.+||+
T Consensus 189 ~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~ 266 (270)
T 3rm3_A 189 QLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISS--TEKEIVRLRNSYHVATLDYDQPMIIERSLEFFA 266 (270)
T ss_dssp HHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHSCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEECCCCcccCHHHHHHHHHhcCC--CcceEEEeCCCCcccccCccHHHHHHHHHHHHH
Confidence 0011234667889999999999999999999999888764 367999999999987655556788999999998
Q ss_pred HHh
Q 004735 712 RVV 714 (732)
Q Consensus 712 ~~l 714 (732)
++.
T Consensus 267 ~~~ 269 (270)
T 3rm3_A 267 KHA 269 (270)
T ss_dssp HHC
T ss_pred hcC
Confidence 864
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-18 Score=164.60 Aligned_cols=198 Identities=14% Similarity=0.102 Sum_probs=147.5
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH--HHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~--~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+...+.. +|.++++++|.|.+ +.|+||++||++... ..+.. ..+.|+++||.|+++|+||.+...
T Consensus 5 ~~~~~~~--~g~~l~~~~~~~~~---------~~~~vv~~hG~~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~ 71 (207)
T 3bdi_A 5 QEEFIDV--NGTRVFQRKMVTDS---------NRRSIALFHGYSFTS--MDWDKADLFNNYSKIGYNVYAPDYPGFGRSA 71 (207)
T ss_dssp EEEEEEE--TTEEEEEEEECCTT---------CCEEEEEECCTTCCG--GGGGGGTHHHHHHTTTEEEEEECCTTSTTSC
T ss_pred eeEEEee--CCcEEEEEEEeccC---------CCCeEEEECCCCCCc--cccchHHHHHHHHhCCCeEEEEcCCcccccC
Confidence 4444444 79999999998854 458999999985443 45666 788999999999999999765431
Q ss_pred hhhHHhhccCCCcc-cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc
Q 004735 540 REFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 540 ~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~ 617 (732)
.... .. ... +.+++.+.+..++++. +.++++++|||+||.+++.++. +|++++++++.+|......
T Consensus 72 ~~~~--~~---~~~~~~~~~~~~~~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~----- 139 (207)
T 3bdi_A 72 SSEK--YG---IDRGDLKHAAEFIRDYLKAN--GVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVESL----- 139 (207)
T ss_dssp CCTT--TC---CTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCGGG-----
T ss_pred cccC--CC---CCcchHHHHHHHHHHHHHHc--CCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccccch-----
Confidence 0000 01 112 5777778877777763 4569999999999999999988 9999999999998733210
Q ss_pred chhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcc
Q 004735 618 HKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697 (732)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 697 (732)
...+.++++|+++++|++|..++++...++.+.+. +++++++++++|.+.. +
T Consensus 140 -----------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~-~ 191 (207)
T 3bdi_A 140 -----------------------KGDMKKIRQKTLLVWGSKDHVVPIALSKEYASIIS----GSRLEIVEGSGHPVYI-E 191 (207)
T ss_dssp -----------------------HHHHTTCCSCEEEEEETTCTTTTHHHHHHHHHHST----TCEEEEETTCCSCHHH-H
T ss_pred -----------------------hHHHhhccCCEEEEEECCCCccchHHHHHHHHhcC----CceEEEeCCCCCCccc-c
Confidence 11234567999999999999999998888887763 5689999999997532 3
Q ss_pred cHHHHHHHHHHHHHH
Q 004735 698 NIKFTLEQQMVFFAR 712 (732)
Q Consensus 698 ~~~~~~~~~~~fl~~ 712 (732)
...+..+.+.+||++
T Consensus 192 ~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 192 KPEEFVRITVDFLRN 206 (207)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 456677777777764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=190.01 Aligned_cols=325 Identities=12% Similarity=0.069 Sum_probs=199.0
Q ss_pred ccCCCCCCCCcCCHHH---HhccCCc-----cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcc
Q 004735 68 ITAPYGSWKSPLTADV---VSGASKR-----LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAV 138 (732)
Q Consensus 68 ~~~~~g~~~~~~~~~~---i~~~~~~-----~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~ 138 (732)
...+|++|-.+.+-+. ++..... +..++|+| |+.++|+... ++...||.++..+| +.+.++....
T Consensus 7 ~~~~~~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~---~g~~~l~~~d~~~~-~~~~l~~~~~-- 80 (396)
T 3c5m_A 7 ITLNFETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF---DGNRNYYLLNLETQ-QAVQLTEGKG-- 80 (396)
T ss_dssp EECCEEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT---TSSCEEEEEETTTT-EEEECCCSSC--
T ss_pred cchhhheeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec---CCCceEEEEECCCC-cEEEeecCCC--
Confidence 3456666666554332 2222122 67899999 9999998764 24446777766643 4455543220
Q ss_pred cccccccCCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeec-------------------eeec
Q 004735 139 RTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYAD-------------------GIFD 199 (732)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~-------------------~~~s 199 (732)
.......|++++..|+|.... ++||++++++ ++.++++.... . ...+ +.|+
T Consensus 81 ----~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~--~~~~~~~~~~~--~-~~~~g~~l~~~~~~~~~~~~~~~~~~s 150 (396)
T 3c5m_A 81 ----DNTFGGFISTDERAFFYVKNE-LNLMKVDLET--LEEQVIYTVDE--E-WKGYGTWVANSDCTKLVGIEILKRDWQ 150 (396)
T ss_dssp ----BCTTTCEECTTSSEEEEEETT-TEEEEEETTT--CCEEEEEECCT--T-EEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred ----CccccceECCCCCEEEEEEcC-CcEEEEECCC--CCcEEEEeccc--c-cCCCCCEEEeccCCccccccccccccC
Confidence 011123345556688888744 4799999987 77777775321 1 1111 3566
Q ss_pred CCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEE
Q 004735 200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVG 278 (732)
Q Consensus 200 pdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~ 278 (732)
|||+.+++....... ....||++|+++++ .+.++........+.||| ||++|+|++. ... .....+||++
T Consensus 151 pdg~~~~~~~~~~~~----~~~~l~~~d~~~g~---~~~~~~~~~~~~~~~~sp~dg~~l~~~~~-~~~-~~~~~~l~~~ 221 (396)
T 3c5m_A 151 PLTSWEKFAEFYHTN----PTCRLIKVDIETGE---LEVIHQDTAWLGHPIYRPFDDSTVGFCHE-GPH-DLVDARMWLV 221 (396)
T ss_dssp CCCSHHHHHHHHHTC----CCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEEEEEEEEC-SCS-SSCSCCCEEE
T ss_pred CCCcceeeeeeccCC----CcceEEEEECCCCc---EEeeccCCcccccceECCCCCCEEEEEec-CCC-CCCCceEEEE
Confidence 777665443210001 13789999999988 777776666677899999 8999999873 211 0112579999
Q ss_pred EecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeee--EEEEeccCCeEEEecccccccCCCceeec
Q 004735 279 YISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN--LHKWIESNNEVLAIYSLDAEFSRPLWVFG 355 (732)
Q Consensus 279 d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~--l~~~d~~~g~~~~l~~~~~~~~~~~w~~~ 355 (732)
|++ +++... +....+. ..+..+.|+|||+ |+|.+.. .+... |+++|+.+++.+.++..... . +.|++.
T Consensus 222 d~~-~~~~~~---l~~~~~~--~~~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~~~-~-~~~s~~ 292 (396)
T 3c5m_A 222 NED-GSNVRK---IKEHAEG--ESCTHEFWIPDGSAMAYVSYF-KGQTDRVIYKANPETLENEEVMVMPPC-S-HLMSNF 292 (396)
T ss_dssp ETT-SCCCEE---SSCCCTT--EEEEEEEECTTSSCEEEEEEE-TTTCCEEEEEECTTTCCEEEEEECCSE-E-EEEECS
T ss_pred ECC-CCceeE---eeccCCC--ccccceEECCCCCEEEEEecC-CCCccceEEEEECCCCCeEEeeeCCCC-C-CCccCC
Confidence 987 555422 2222101 3456789999999 8888776 55544 99999999988777643211 1 445430
Q ss_pred ccceeeeeecCCCCEEEEEEE-------------ECCEEEEEEEECCCCceEEeccCCCc-----------eEEe-eEeC
Q 004735 356 INSYEIIQSHGEKNLIACSYR-------------QNGRSYLGILDDFGHSLSLLDIPFTD-----------IDNI-TLGN 410 (732)
Q Consensus 356 ~~~~~~~~~~~~~~~l~~~s~-------------~~g~~~ly~~~~~~~~~~~lt~~~~~-----------v~~~-~~~~ 410 (732)
+++.+++... ..+...||++++++++.++|+..... ...+ ..++
T Consensus 293 -----------dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~d 361 (396)
T 3c5m_A 293 -----------DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPN 361 (396)
T ss_dssp -----------SSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred -----------CCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccC
Confidence 3444444321 12457899999999988888765431 2222 3334
Q ss_pred CEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 411 DCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 411 ~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
++.+++.+......+||++++++++.+
T Consensus 362 g~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 362 DDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp SSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred CCeEEEEecCCCCceEEEEEEcccccc
Confidence 444455555566778999999888753
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-18 Score=166.78 Aligned_cols=187 Identities=16% Similarity=0.097 Sum_probs=136.0
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHH--CCCEEEEEcCCCC-----C-----------CCChhhHHhhccCCC-c
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGS-----T-----------GYGREFRERLLGRWG-I 552 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~--~G~~v~~~d~rG~-----~-----------g~g~~~~~~~~~~~~-~ 552 (732)
.++.|+||++||++. ....+....+.|++ +||.|+++|.+|. . |+|.+.. ..... .
T Consensus 11 ~~~~~~vv~~HG~~~--~~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~---~~~~~~~ 85 (218)
T 1auo_A 11 KPADACVIWLHGLGA--DRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARS---ISLEELE 85 (218)
T ss_dssp SCCSEEEEEECCTTC--CTTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCE---ECHHHHH
T ss_pred CCCCcEEEEEecCCC--ChhhHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccc---cchHHHH
Confidence 456799999999843 34456778888888 9999999987641 0 1111000 00000 0
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcC
Q 004735 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 630 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 630 (732)
...+|+.+.++++.+ ..++.++++++|||+||++++.++. +|++++++|+++|..+.. .+.
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~-------~~~--------- 148 (218)
T 1auo_A 86 VSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF-------GDE--------- 148 (218)
T ss_dssp HHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC-------CTT---------
T ss_pred HHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCc-------hhh---------
Confidence 114555556666655 3578889999999999999999876 788999999999987540 000
Q ss_pred ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 631 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 631 ~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
+ ......+++|+|+++|++|.+++++.++++++.+++.|.++++++++ ++|.+. .+..+.+.+||
T Consensus 149 --~-------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~~~~~~~l 213 (218)
T 1auo_A 149 --L-------ELSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEIHDIGAWL 213 (218)
T ss_dssp --C-------CCCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHHHHHHHHH
T ss_pred --h-------hhhhcccCCCEEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEec-CCCccC-----HHHHHHHHHHH
Confidence 0 00112457899999999999999999999999999988899999999 999864 34567889999
Q ss_pred HHHhC
Q 004735 711 ARVVG 715 (732)
Q Consensus 711 ~~~l~ 715 (732)
.++|+
T Consensus 214 ~~~l~ 218 (218)
T 1auo_A 214 AARLG 218 (218)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98874
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=185.25 Aligned_cols=244 Identities=16% Similarity=0.117 Sum_probs=156.3
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc----ccHHHHHHHHCCCEEEEEcCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI----LNLSIQYWTSRGWAFVDVNYGGS 535 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~----~~~~~~~l~~~G~~v~~~d~rG~ 535 (732)
..+...+.+. +|..++++.+.|.... ..+.+..|.||++||.+.....+. ....+..|+++||.|+++|+||.
T Consensus 26 ~~~~~~~~~~-dG~~l~~~~~~~~~~~--~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~ 102 (377)
T 1k8q_A 26 PAEEYEVVTE-DGYILGIDRIPYGRKN--SENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp CCEEEEEECT-TSEEEEEEEECSCSSC--CTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CceEEEeEcC-CCCEEEEEEecCCCCC--ccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCC
Confidence 3577888887 9999999888775310 000135789999999865543322 22355688999999999999987
Q ss_pred CCCChhhHH-hhcc---CCCccc-HH-HHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC---cceEEEeec
Q 004735 536 TGYGREFRE-RLLG---RWGIVD-VN-DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD---TFKAGASLY 605 (732)
Q Consensus 536 ~g~g~~~~~-~~~~---~~~~~~-~~-D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~---~~~a~v~~~ 605 (732)
+........ .... .+...+ .+ |+.++++++.++. +.++++++|||+||.+++.++. +|+ +++++|+++
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~ 180 (377)
T 1k8q_A 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA 180 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred CCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeC
Confidence 654321000 0000 111111 34 7888899887763 3468999999999999999988 888 899999999
Q ss_pred CcCCHHHHHhhc---------------------c--hhhhhh---------------------------------hhhhc
Q 004735 606 GVADLSMLRAET---------------------H--KFESRY---------------------------------IDNLV 629 (732)
Q Consensus 606 ~~~d~~~~~~~~---------------------~--~~~~~~---------------------------------~~~~~ 629 (732)
|........... . .+.... +....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (377)
T 1k8q_A 181 PVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYL 260 (377)
T ss_dssp CCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHH
T ss_pred CchhcccchhHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCcccCCHHHHHHHh
Confidence 865321100000 0 000000 00000
Q ss_pred ----CC-----------------------------hhhhhhc-CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHH
Q 004735 630 ----GS-----------------------------EKDYYEK-SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 675 (732)
Q Consensus 630 ----~~-----------------------------~~~~~~~-sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~ 675 (732)
.. ...|... .+...+.++++|+|+++|++|.++|++.++++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~ 340 (377)
T 1k8q_A 261 SHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLP 340 (377)
T ss_dssp TTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCT
T ss_pred ccCCCCccHHHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccCHHHHHHHHHhCc
Confidence 00 0000000 1123377889999999999999999999888877664
Q ss_pred hCCCCEE-EEEeCCCCccCCC--cccHHHHHHHHHHHHHH
Q 004735 676 ENGLPVA-LVEYEGEQHGFRK--AENIKFTLEQQMVFFAR 712 (732)
Q Consensus 676 ~~g~~~~-~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~~ 712 (732)
+.+ +++++++||.... .+...++.+.+.+||++
T Consensus 341 ----~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~ 376 (377)
T 1k8q_A 341 ----NLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp ----TEEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred ----CcccEEecCCCCceEEEecCCcHHHHHHHHHHHhcc
Confidence 334 9999999997532 46777888999999875
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=182.93 Aligned_cols=245 Identities=17% Similarity=0.152 Sum_probs=160.1
Q ss_pred CCcEEEEeecc-CCC--eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc-CCc-----ccHHHHHHH-HCCCEEE
Q 004735 459 SLPELIEFPTE-VPG--QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGI-----LNLSIQYWT-SRGWAFV 528 (732)
Q Consensus 459 ~~~~~i~~~~~-~~g--~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~-~~~-----~~~~~~~l~-~~G~~v~ 528 (732)
.+..++.|.+. .+| ..+.++++.|.+ +.++.|+|++.||...... ... .......|+ ++||+|+
T Consensus 41 ~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~------~~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv 114 (377)
T 4ezi_A 41 LQLYKINYKTQSPDGNLTIASGLVAMPIH------PVGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTV 114 (377)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEESS------CSSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEE
T ss_pred cEEEEEEEEEECCCCCEEEEEEEEEECCC------CCCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEE
Confidence 34567888776 134 457899999986 2356899999999763211 111 113456678 9999999
Q ss_pred EEcCCCCCCCCh---hhHHhhccCCCcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh-C----CC-cc
Q 004735 529 DVNYGGSTGYGR---EFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-F----RD-TF 598 (732)
Q Consensus 529 ~~d~rG~~g~g~---~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~----p~-~~ 598 (732)
++||||.++.+. .+.... ....++.|...++..+.+. +..+.++|+++|||+||+++++++. + |+ .+
T Consensus 115 ~~D~rG~G~s~~~~~~~~~~~---~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l 191 (377)
T 4ezi_A 115 MPDYLGLGDNELTLHPYVQAE---TLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPV 191 (377)
T ss_dssp EECCTTSTTCCCSSCCTTCHH---HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCC
T ss_pred EeCCCCCCCCCCCCcccccch---hHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCce
Confidence 999999876553 111100 0112244444444444443 3335689999999999999999886 4 33 58
Q ss_pred eEEEeecCcCCHHHHHhhcc-----------hh---------------h-------hhhhhhhcC--------------C
Q 004735 599 KAGASLYGVADLSMLRAETH-----------KF---------------E-------SRYIDNLVG--------------S 631 (732)
Q Consensus 599 ~a~v~~~~~~d~~~~~~~~~-----------~~---------------~-------~~~~~~~~~--------------~ 631 (732)
.++++.++..|+........ .+ . ...+..... +
T Consensus 192 ~g~~~~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (377)
T 4ezi_A 192 SAVAPGSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQD 271 (377)
T ss_dssp CEEEEESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSS
T ss_pred EEEEecCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCC
Confidence 99999999988765422111 00 0 000000000 0
Q ss_pred hhh-----hhh-----cCc-cc--------cCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC--CC
Q 004735 632 EKD-----YYE-----KSP-IN--------FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG--EQ 690 (732)
Q Consensus 632 ~~~-----~~~-----~sp-~~--------~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~--~g 690 (732)
... +.. ..| +. .-..+++|+|++||++|.+||+.++.++++.+++.|. ++++++++ .+
T Consensus 272 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v~~~~~~~~~~~ 350 (377)
T 4ezi_A 272 PLLIFQPKFSNGIISKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSD-FVWIKSVSDALD 350 (377)
T ss_dssp GGGGBCHHHHHHHHTTCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTTCS-CEEEEESCSSCC
T ss_pred HHHHhchhhhhhcccccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhcCC-EEEEEcCCCCCC
Confidence 000 000 112 00 0225679999999999999999999999999999998 99999999 89
Q ss_pred ccCCCcccHHHHHHHHHHHHHHHhCCC
Q 004735 691 HGFRKAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 691 H~~~~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
|... ........++||+++++.+
T Consensus 351 H~~~----~~~~~~~~~~wl~~~~~~~ 373 (377)
T 4ezi_A 351 HVQA----HPFVLKEQVDFFKQFERQE 373 (377)
T ss_dssp TTTT----HHHHHHHHHHHHHHHHTSS
T ss_pred ccCh----HHHHHHHHHHHHHHhhcch
Confidence 9753 3567889999999999853
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=198.84 Aligned_cols=251 Identities=16% Similarity=0.136 Sum_probs=175.3
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-cccHHH-HHHHHCCCEEEEEcCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSI-QYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~~~~~~-~~l~~~G~~v~~~d~rG~~g 537 (732)
..+.+.++.. ||.++.+.+|.|.+ .++.|+||+.||.+...... .+...+ +.|+++||+|+.+|+||+++
T Consensus 8 ~~~~v~i~~~-DG~~L~~~~~~P~~-------~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~ 79 (587)
T 3i2k_A 8 VASNVMVPMR-DGVRLAVDLYRPDA-------DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFA 79 (587)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEECC-------SSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTT
T ss_pred EEEEEEEECC-CCCEEEEEEEECCC-------CCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCC
Confidence 3567889998 99999999999975 45689999999863332111 121123 78999999999999999888
Q ss_pred CChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc-CCHHHHH-
Q 004735 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV-ADLSMLR- 614 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~-~d~~~~~- 614 (732)
++..+.. + ..+.+|+.++++|+.++...+ .+|+++|+||||++++.++. +++.++++|+.++. .|+..-.
T Consensus 80 S~g~~~~-----~-~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~ 152 (587)
T 3i2k_A 80 SEGEFVP-----H-VDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWY 152 (587)
T ss_dssp CCSCCCT-----T-TTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCS
T ss_pred CCCcccc-----c-cchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCccccccccee
Confidence 7654332 1 246899999999999887655 89999999999999999998 79999999999987 5432100
Q ss_pred --h-hcc-----hhh--------------------------------hhhh------------------hhh-cC---Ch
Q 004735 615 --A-ETH-----KFE--------------------------------SRYI------------------DNL-VG---SE 632 (732)
Q Consensus 615 --~-~~~-----~~~--------------------------------~~~~------------------~~~-~~---~~ 632 (732)
. ... .+. ..++ ... +. ..
T Consensus 153 ~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (587)
T 3i2k_A 153 GPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDND 232 (587)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCCSCC
T ss_pred ecCCccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCCCCC
Confidence 0 000 000 0000 111 11 12
Q ss_pred hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC---------ccc---HH
Q 004735 633 KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK---------AEN---IK 700 (732)
Q Consensus 633 ~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~---------~~~---~~ 700 (732)
..|...++...+++|++|+|+++|..|..+ ..+.+++++|+..++ ..+++-|. .|.... +.. ..
T Consensus 233 ~yw~~~s~~~~l~~I~vPvL~v~Gw~D~~~--~~~~~~~~~l~~~~~-~~L~iGPw-~H~~~~~~~g~~~~g~~~~~~~~ 308 (587)
T 3i2k_A 233 ESWQSISLFERLGGLATPALITAGWYDGFV--GESLRTFVAVKDNAD-ARLVVGPW-SHSNLTGRNADRKFGIAATYPIQ 308 (587)
T ss_dssp HHHHTTCCHHHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTTTSC-EEEEEEEE-ETTBCSSEETTEECCGGGSCCHH
T ss_pred hHHhcCChhhhhccCCCCEEEEccCCCccc--hHHHHHHHHHhhcCC-CEEEECCc-cccCccccCCCcccCCccccccc
Confidence 456667777788999999999999999764 457889999987764 36666554 364211 111 22
Q ss_pred HHHHHHHHHHHHHhCCCCCC-CCCCccccc
Q 004735 701 FTLEQQMVFFARVVGHFDVA-DEIIPIKID 729 (732)
Q Consensus 701 ~~~~~~~~fl~~~l~~~~~~-~~~~~~~~~ 729 (732)
+..+.+++||+++|++.++. +..|+|.+.
T Consensus 309 ~~~~~~~~wFD~~Lkg~~ng~~~~p~v~~~ 338 (587)
T 3i2k_A 309 EATTMHKAFFDRHLRGETDALAGVPKVRLF 338 (587)
T ss_dssp HHHHHHHHHHHHHHSCCTTTTTTCCSEEEE
T ss_pred hhhHHHHHHHHHHhcCCCCCCCCCCCEEEE
Confidence 44588999999999976653 456777654
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=164.74 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=137.6
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEE--cCCCCCCCChhhHHhhccCCC----cccHHHHHHHHHHHH
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV--NYGGSTGYGREFRERLLGRWG----IVDVNDCCSCATFLV 566 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~--d~rG~~g~g~~~~~~~~~~~~----~~~~~D~~~~i~~l~ 566 (732)
++.|+||++||++.. ...+....+.|++ ||.|+++ |++|.+.... +.......+. ..+++++.+.++++.
T Consensus 36 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~~~d~~g~g~s~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGN--ELDLLPLAEIVDS-EASVLSVRGNVLENGMPRF-FRRLAEGIFDEEDLIFRTKELNEFLDEAA 111 (226)
T ss_dssp TTSCEEEEECCTTCC--TTTTHHHHHHHHT-TSCEEEECCSEEETTEEES-SCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCC--hhHHHHHHHHhcc-CceEEEecCcccCCcchhh-ccccCccCcChhhHHHHHHHHHHHHHHHH
Confidence 467999999998533 3456667777877 9999999 7776543210 0000000001 112455667777777
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCC
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 645 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 645 (732)
++..++.++++++|||+||++++.++. +|++++++++++|..+... .....
T Consensus 112 ~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~----------------------------~~~~~ 163 (226)
T 2h1i_A 112 KEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG----------------------------MQLAN 163 (226)
T ss_dssp HHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS----------------------------CCCCC
T ss_pred hhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc----------------------------ccccc
Confidence 777778899999999999999999988 9999999999999854321 11223
Q ss_pred CCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 646 ~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.+++|+|+++|++|.+++++..+++++.+++.+.++++ ++++++|.+. .+..+.+.+||.++|
T Consensus 164 ~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 164 LAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWYDKAF 226 (226)
T ss_dssp CTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHHHHHC
T ss_pred ccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999988888888 9999999873 456788899998865
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=172.88 Aligned_cols=203 Identities=16% Similarity=0.134 Sum_probs=143.3
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhh-------ccCCCcccHHHHHHHHHHHH
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERL-------LGRWGIVDVNDCCSCATFLV 566 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~-------~~~~~~~~~~D~~~~i~~l~ 566 (732)
+.|+||++||.+... ..+...+..|+++||.|+++|+||.+.......... ....-....+|+.++++++.
T Consensus 23 ~~~~vv~~hG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~ 100 (238)
T 1ufo_A 23 PKALLLALHGLQGSK--EHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAE 100 (238)
T ss_dssp CCEEEEEECCTTCCH--HHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCCcccc--hHHHHHHHHHHhCCCEEEEecCCCCccCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 469999999985332 344556677788899999999998654322110000 00000123678888899987
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCC
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 645 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 645 (732)
+.+. ++++++|||+||.+++.++. +|+.++++++.++....... . . .. ....+...+...++...+.
T Consensus 101 ~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~-~---~----~~-~~~~~~~~~~~~~~~~~~~ 168 (238)
T 1ufo_A 101 RRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLP-Q---G----QV-VEDPGVLALYQAPPATRGE 168 (238)
T ss_dssp HHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCCC-T---T----CC-CCCHHHHHHHHSCGGGCGG
T ss_pred hccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchhh-h---h----hc-cCCcccchhhcCChhhhhh
Confidence 7643 79999999999999999988 89888888887765321100 0 0 00 0000012334455566667
Q ss_pred CC-CCCEEEEEeCCCCccChHHHHHHHHHHH-hCCC-CEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 646 KF-SCPIILFQGLEDKVVPPDQARKIYKALK-ENGL-PVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 646 ~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~-~~g~-~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++ ++|+|+++|++|.+++++.+.++++.++ +.|. +++++++++++|.+. .+..+.+.+||.++++
T Consensus 169 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~-----~~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 169 AYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLT-----PLMARVGLAFLEHWLE 236 (238)
T ss_dssp GGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCcccH-----HHHHHHHHHHHHHHHh
Confidence 77 8999999999999999999999999999 8877 899999999999764 3466788899998885
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=170.71 Aligned_cols=199 Identities=12% Similarity=0.033 Sum_probs=141.9
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhcc--
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG-- 548 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~-- 548 (732)
++..+++.++.|.. ...|+||++||++.. ...+....+.|++ ||.|+++|.++..+.+..+......
T Consensus 14 ~~~~l~~~~~~~~~--------~~~p~vv~lHG~g~~--~~~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~ 82 (223)
T 3b5e_A 14 TDLAFPYRLLGAGK--------ESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTR 82 (223)
T ss_dssp CSSSSCEEEESTTS--------SCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTE
T ss_pred cCCCceEEEeCCCC--------CCCCEEEEEecCCCC--HHHHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCCCc
Confidence 34556666665543 234999999998433 3455666777765 9999999987532212222110000
Q ss_pred -CC--CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhh
Q 004735 549 -RW--GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRY 624 (732)
Q Consensus 549 -~~--~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~ 624 (732)
.. -....+++.+.++++.++..++.++++|+|||+||.+++.++. +|++++++++++|......
T Consensus 83 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------ 150 (223)
T 3b5e_A 83 FEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH------------ 150 (223)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc------------
Confidence 00 0112567777788887776678899999999999999999988 9999999999999754210
Q ss_pred hhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHH
Q 004735 625 IDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLE 704 (732)
Q Consensus 625 ~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~ 704 (732)
......+++|+|+++|++|.++|++.++ +++.+++.|.++++++++ ++|.+. .+..+
T Consensus 151 ----------------~~~~~~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~~ 207 (223)
T 3b5e_A 151 ----------------VPATDLAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARIIP-SGHDIG-----DPDAA 207 (223)
T ss_dssp ----------------CCCCCCTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEES-CCSCCC-----HHHHH
T ss_pred ----------------cccccccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEec-CCCCcC-----HHHHH
Confidence 0122346789999999999999999999 999999999899999999 999874 23456
Q ss_pred HHHHHHHHHhC
Q 004735 705 QQMVFFARVVG 715 (732)
Q Consensus 705 ~~~~fl~~~l~ 715 (732)
.+.+||++.+.
T Consensus 208 ~i~~~l~~~~~ 218 (223)
T 3b5e_A 208 IVRQWLAGPIA 218 (223)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHhhhh
Confidence 78888876553
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=162.87 Aligned_cols=173 Identities=10% Similarity=0.076 Sum_probs=129.1
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
++.|+||++||.+.....+.+....+.|+++||.|+++|+||.+.... .. ......+++.++++++.+.. +
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~---~~----~~~~~~~~~~~~~~~~~~~~--~ 72 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRD---LG----QLGDVRGRLQRLLEIARAAT--E 72 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHHHHTCGG---GC----TTCCHHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCC---CC----CCCCHHHHHHHHHHHHHhcC--C
Confidence 356899999998654433344477888999999999999997543211 10 11112445556677776653 3
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCE
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPI 651 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~ 651 (732)
.++++++|||+||.+++.++. +| ++++++.+|..+...+ ..+.++++|+
T Consensus 73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~----------------------------~~~~~~~~P~ 122 (176)
T 2qjw_A 73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL----------------------------PALDAAAVPI 122 (176)
T ss_dssp TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB----------------------------CCCCCCSSCE
T ss_pred CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc----------------------------CcccccCCCE
Confidence 579999999999999999998 66 9999999987654210 0155678999
Q ss_pred EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 652 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
|+++|++|.++|++...++++.+ +++++++ +++|.+. +...++.+.+.+|+++
T Consensus 123 l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~-~~~H~~~--~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 123 SIVHAWHDELIPAADVIAWAQAR-----SARLLLV-DDGHRLG--AHVQAASRAFAELLQS 175 (176)
T ss_dssp EEEEETTCSSSCHHHHHHHHHHH-----TCEEEEE-SSCTTCT--TCHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCccCHHHHHHHHHhC-----CceEEEe-CCCcccc--ccHHHHHHHHHHHHHh
Confidence 99999999999999999998887 3588888 8999873 5677788888888764
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=169.24 Aligned_cols=194 Identities=15% Similarity=0.145 Sum_probs=135.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHC-----CCEEEEEcCCCCC------CCChhhHHhh-c---cCCCcccHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-----GWAFVDVNYGGST------GYGREFRERL-L---GRWGIVDVN 556 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-----G~~v~~~d~rG~~------g~g~~~~~~~-~---~~~~~~~~~ 556 (732)
.++.|+||++||.+.. ...+......+..+ |+.|+++|.++.. +.+..|.+.. . .......++
T Consensus 20 ~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 97 (239)
T 3u0v_A 20 GRHSASLIFLHGSGDS--GQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESID 97 (239)
T ss_dssp SCCCEEEEEECCTTCC--HHHHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHH
T ss_pred CCCCcEEEEEecCCCc--hhhHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHH
Confidence 3567999999997433 33455566777665 6899999976421 1111111100 0 000011234
Q ss_pred HHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCCh
Q 004735 557 DCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSE 632 (732)
Q Consensus 557 D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 632 (732)
++.+.+..++++ ..++.++++|+|||+||++++.++. +|++++++++++|..+....... .
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~-------~-------- 162 (239)
T 3u0v_A 98 VMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASAVYQ-------A-------- 162 (239)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCHHHH-------H--------
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhHHHH-------H--------
Confidence 444444443332 4578899999999999999999988 99999999999998764322110 0
Q ss_pred hhhhhcCccccCCCCCCC-EEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 633 KDYYEKSPINFVDKFSCP-IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 633 ~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+ ......+| +|++||++|.++++++++++++.+++.+.+++++++++++|.+. .+..+.+.+||+
T Consensus 163 --~-------~~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~-----~~~~~~~~~~l~ 228 (239)
T 3u0v_A 163 --L-------QKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELS-----KTELDILKLWIL 228 (239)
T ss_dssp --H-------HHCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHH
T ss_pred --H-------HhhccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC-----HHHHHHHHHHHH
Confidence 0 01223456 99999999999999999999999999999999999999999875 466888999999
Q ss_pred HHhCC
Q 004735 712 RVVGH 716 (732)
Q Consensus 712 ~~l~~ 716 (732)
+++..
T Consensus 229 ~~l~~ 233 (239)
T 3u0v_A 229 TKLPG 233 (239)
T ss_dssp HHCC-
T ss_pred HhCCC
Confidence 99963
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=183.83 Aligned_cols=258 Identities=10% Similarity=0.058 Sum_probs=169.6
Q ss_pred ceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE--CCEEEEEe--------
Q 004735 93 GTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSN-------- 161 (732)
Q Consensus 93 ~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~--~~~i~f~~-------- 161 (732)
.+.|+| |+.|+|.... + .++.++..+| +.+.+...+.... ....+..+ +..++...
T Consensus 85 ~~~~spdg~~l~~~~~~----~--~l~~~d~~~g-~~~~~~~~~~~~~------~~~~~~~~~dg~~l~~~~~~~~~~~~ 151 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDG----R--NLMRVDLATL-EENVVYQVPAEWV------GYGTWVANSDCTKLVGIEIRREDWVP 151 (388)
T ss_dssp SCEECTTSSEEEEEETT----T--EEEEEETTTC-CEEEEEECCTTEE------EEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred ceEEcCCCCEEEEEeCC----C--eEEEEECCCC-cceeeeechhhcc------cccceeECCCCCeeccccccCccccc
Confidence 689999 9999998742 2 4667766654 4444433220000 00112222 22333221
Q ss_pred -------------CCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 162 -------------YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 162 -------------~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
....+||++|+++ ++.++++.. ......+.||| ||++|+|+....... ...+||+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~l~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~---~~~~l~~~d 222 (388)
T 3pe7_A 152 LTDWKKFHEFYFTKPCCRLMRVDLKT--GESTVILQE----NQWLGHPIYRPYDDSTVAFCHEGPHDL---VDARMWLIN 222 (388)
T ss_dssp CCSHHHHHHHGGGCCCEEEEEEETTT--CCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCTTT---SSCSEEEEE
T ss_pred ccccchhhhhhccCCcceEEEEECCC--CceEEeecC----CccccccEECCCCCCEEEEEEecCCCC---CcceEEEEe
Confidence 1235899999998 888888765 33457789999 999999987632111 136899999
Q ss_pred cCCCCccccEEcccCC--CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 228 LNGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~--~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
+++++ .++|+... .....|.|||||++|+|++..... ....||++|++ +|+.+.+..+.+.. ........
T Consensus 223 ~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~---~~~~l~~~d~~-~g~~~~l~~~~~~~-~~~~~~~~ 294 (388)
T 3pe7_A 223 EDGTN---MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS---PDRFIYSADPE-TLENRQLTSMPACS-HLMSNYDG 294 (388)
T ss_dssp TTSCC---CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTC---CCEEEEEECTT-TCCEEEEEEECCEE-EEEECTTS
T ss_pred CCCCc---eEEeeeCCCCcccccceECCCCCEEEEEecCCCC---CcceEEEEecC-CCceEEEEcCCCce-eeeecCCC
Confidence 99888 88888665 346689999999999999854422 23469999998 78765444443310 00011345
Q ss_pred ceeCCCCc-EEEEEecc-----CCeeeEEEEeccCCeEEEeccccc-----------ccCCCceeecccceeeeeecCCC
Q 004735 306 PKWSSKGE-LFFVTDRK-----NGFWNLHKWIESNNEVLAIYSLDA-----------EFSRPLWVFGINSYEIIQSHGEK 368 (732)
Q Consensus 306 ~~wspDg~-l~~~~~~~-----~g~~~l~~~d~~~g~~~~l~~~~~-----------~~~~~~w~~~~~~~~~~~~~~~~ 368 (732)
..|||||+ |++..... .+...|+++|+++++.+.|+.... ....+.|++ |+
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sp------------Dg 362 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTP------------DD 362 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECT------------TS
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCC------------CC
Confidence 68999999 87765321 356789999999999988885543 244566665 89
Q ss_pred CEEEEEEEECCEEEEEEEECCCCc
Q 004735 369 NLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 369 ~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
+.|++.+++++..+||++++..+.
T Consensus 363 ~~l~~~s~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 363 KQILFTSDVHGKPALYLATLPESV 386 (388)
T ss_dssp SEEEEEECTTSSCEEEEEECCGGG
T ss_pred CEEEEEecCCCceeEEEEECChhc
Confidence 999999999999999999987654
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=163.63 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=134.8
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHH--CCCEEEEEcCCCCC----------------CCChhhHHhhccCCCcc
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGST----------------GYGREFRERLLGRWGIV 553 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~--~G~~v~~~d~rG~~----------------g~g~~~~~~~~~~~~~~ 553 (732)
.++.|+||++||++.. ...+...+..|++ +||.|+++|++|.+ |+|.+. .....
T Consensus 21 ~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~------~~~~~ 92 (226)
T 3cn9_A 21 PNADACIIWLHGLGAD--RTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPAR------AIDED 92 (226)
T ss_dssp TTCCEEEEEECCTTCC--GGGGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTT------CBCHH
T ss_pred CCCCCEEEEEecCCCC--hHHHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccc------cccch
Confidence 4567999999998543 3456778888888 99999999887421 122110 00111
Q ss_pred c----HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhh
Q 004735 554 D----VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDN 627 (732)
Q Consensus 554 ~----~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 627 (732)
. .+++.+.++.+.+ ..++.++++|+|||+||.+++.++. +|++++++++++|..+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~------------- 158 (226)
T 3cn9_A 93 QLNASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL------------- 158 (226)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC-------------
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh-------------
Confidence 1 3444455555544 3577889999999999999998876 788999999999976533110
Q ss_pred hcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHH
Q 004735 628 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQM 707 (732)
Q Consensus 628 ~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 707 (732)
.. ...++++|+|+++|++|.++|++.++++++.+++.|.++++++++ ++|.+. .+..+.+.
T Consensus 159 ---------~~----~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~~~i~ 219 (226)
T 3cn9_A 159 ---------AL----DERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP-MGHEVS-----LEEIHDIG 219 (226)
T ss_dssp ---------CC----CTGGGGCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEES-CCSSCC-----HHHHHHHH
T ss_pred ---------hh----cccccCCCEEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEec-CCCCcc-----hhhHHHHH
Confidence 00 123567899999999999999999999999999998899999999 999864 34567889
Q ss_pred HHHHHHh
Q 004735 708 VFFARVV 714 (732)
Q Consensus 708 ~fl~~~l 714 (732)
+||+++|
T Consensus 220 ~~l~~~l 226 (226)
T 3cn9_A 220 AWLRKRL 226 (226)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 9998875
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=168.86 Aligned_cols=183 Identities=16% Similarity=0.064 Sum_probs=116.4
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHC--CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
|+||++||...+........+.+++.++ +|.|++||++|.+ .+ ..+.++.++.+ .+.
T Consensus 3 ptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl~~~g---~~----------------~~~~l~~~~~~--~~~ 61 (202)
T 4fle_A 3 STLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPPYP---AE----------------AAEMLESIVMD--KAG 61 (202)
T ss_dssp CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCCCSSH---HH----------------HHHHHHHHHHH--HTT
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCCCCCH---HH----------------HHHHHHHHHHh--cCC
Confidence 8999999974443333334456667665 5999999998542 22 23333333333 235
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhc-CCh-hhhhhcCccccCCCCCCC
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV-GSE-KDYYEKSPINFVDKFSCP 650 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~sp~~~~~~i~~P 650 (732)
++++|+|+||||++|+.++. +++....++...+..+....... .....+..... ... ...........+.++++|
T Consensus 62 ~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 139 (202)
T 4fle_A 62 QSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLG--ENQNPYTGQKYVLESRHIYDLKAMQIEKLESPDL 139 (202)
T ss_dssp SCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCE--EEECTTTCCEEEECHHHHHHHHTTCCSSCSCGGG
T ss_pred CcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhh--hhccccccccccchHHHHHHHHhhhhhhhccCce
Confidence 79999999999999999998 88877666655443222111000 00000000000 001 111223344557788899
Q ss_pred EEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 651 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 651 ~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+|++||++|.+||++++.++++ ++++++++|++|.+... .+.++.+.+||+
T Consensus 140 ~LiihG~~D~~Vp~~~s~~l~~-------~~~l~i~~g~~H~~~~~---~~~~~~I~~FL~ 190 (202)
T 4fle_A 140 LWLLQQTGDEVLDYRQAVAYYT-------PCRQTVESGGNHAFVGF---DHYFSPIVTFLG 190 (202)
T ss_dssp EEEEEETTCSSSCHHHHHHHTT-------TSEEEEESSCCTTCTTG---GGGHHHHHHHHT
T ss_pred EEEEEeCCCCCCCHHHHHHHhh-------CCEEEEECCCCcCCCCH---HHHHHHHHHHHh
Confidence 9999999999999999988763 45899999999987543 456778888886
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=176.01 Aligned_cols=222 Identities=16% Similarity=0.140 Sum_probs=148.5
Q ss_pred EEEee---ccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHHCCCEEEEEcCCCCCC-
Q 004735 463 LIEFP---TEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTG- 537 (732)
Q Consensus 463 ~i~~~---~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rG~~g- 537 (732)
.++|. .. +|.++.+++|.|.+. ..+.|+||++||+++.. ..+ ....+.+.++||.|+++|+|+...
T Consensus 26 ~~~~~~~~~~-~~~~l~~~~~~P~~~------~~~~p~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~v~~~d~~~~~~p 96 (304)
T 3d0k_A 26 AIPYLDDDRN-ADRPFTLNTYRPYGY------TPDRPVVVVQHGVLRNG--ADYRDFWIPAADRHKLLIVAPTFSDEIWP 96 (304)
T ss_dssp EEEECC---C-TTCCEEEEEEECTTC------CTTSCEEEEECCTTCCH--HHHHHHTHHHHHHHTCEEEEEECCTTTSC
T ss_pred eEEecccCCC-CCceEEEEEEeCCCC------CCCCcEEEEeCCCCCCH--HHHHHHHHHHHHHCCcEEEEeCCccccCC
Confidence 45665 44 788999999999752 34579999999986544 233 455777888999999999996411
Q ss_pred --------C--ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC-cceEEEeec
Q 004735 538 --------Y--GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD-TFKAGASLY 605 (732)
Q Consensus 538 --------~--g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~-~~~a~v~~~ 605 (732)
+ |.+-. ........++|+.++++++.++..+|.++|+|+|||+||++++.++. +|+ +++++|+.+
T Consensus 97 ~~~~~~~g~~~g~s~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~ 173 (304)
T 3d0k_A 97 GVESYNNGRAFTAAGN---PRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAAN 173 (304)
T ss_dssp HHHHTTTTTCBCTTSC---BCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEES
T ss_pred CccccccCccccccCC---CCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEec
Confidence 1 11100 00011234578999999999987788999999999999999999988 885 788888655
Q ss_pred -CcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccC-----------------hHHH
Q 004735 606 -GVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVP-----------------PDQA 667 (732)
Q Consensus 606 -~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~-----------------~~~~ 667 (732)
|..++.... ..+...+.. ...+|......+++|+|++||++|.++. ...+
T Consensus 174 ~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (304)
T 3d0k_A 174 PGWYTLPTFE-------HRFPEGLDG-----VGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARA 241 (304)
T ss_dssp CSSCCCSSTT-------SBTTTSSBT-----TTCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHHH
T ss_pred CcccccCCcc-------ccCccccCC-----CCCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccHHHHH
Confidence 654432210 000000000 0112322233346899999999998742 3456
Q ss_pred HHHHHHHH----hCCCC--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 668 RKIYKALK----ENGLP--VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 668 ~~~~~~l~----~~g~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
..+++.++ +.|.+ +++++++++||.+ ......+.+||.+..
T Consensus 242 ~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~------~~~~~~~~~~~~~~~ 288 (304)
T 3d0k_A 242 RHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDG------QAMSQVCASLWFDGR 288 (304)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEEETTCCSCH------HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEeCCCCCch------HHHHHHHHHHHhhhh
Confidence 66777776 56766 8999999999976 245567778776544
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=174.93 Aligned_cols=231 Identities=16% Similarity=0.119 Sum_probs=151.9
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHH-HHHHHCC---CEEEEEc
Q 004735 456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSI-QYWTSRG---WAFVDVN 531 (732)
Q Consensus 456 ~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~-~~l~~~G---~~v~~~d 531 (732)
..+...+.+++.+...|..+.+++|.|++.. +.+++|+|+++||++.......+.... +..++.| ++|+.+|
T Consensus 13 ~~~~~~~~~~~~s~~~g~~~~~~v~~P~~~~----~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~ 88 (275)
T 2qm0_A 13 IITSNTEQWKMYSKLEGKEYQIHISKPKQPA----PDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVG 88 (275)
T ss_dssp CCCTTEEEEEEECTTTCCEEEEEEECCSSCC----CTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEE
T ss_pred eecCCceEEEEEecCCCCEEEEEEECCCCCC----CCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEEC
Confidence 4556778889988646889999999998743 246789999999974311111111111 1223457 9999999
Q ss_pred CCCCCCCChhhH--Hhhcc----------------CCC-cccHHHHH--HHHHHHHhcCCCCCCcEEEEEcChHHHHHHH
Q 004735 532 YGGSTGYGREFR--ERLLG----------------RWG-IVDVNDCC--SCATFLVGSGKADEKRLCITGGSAGGYTTLA 590 (732)
Q Consensus 532 ~rG~~g~g~~~~--~~~~~----------------~~~-~~~~~D~~--~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~ 590 (732)
+++...++...+ +.... ..+ .....+.. +.+.++.++..+|+++++|+|||+||++++.
T Consensus 89 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~ 168 (275)
T 2qm0_A 89 YPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALH 168 (275)
T ss_dssp CSCSSSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHH
T ss_pred CCCCCcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHH
Confidence 987543322111 00000 011 11222322 3455666666788899999999999999999
Q ss_pred HHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHH
Q 004735 591 ALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARK 669 (732)
Q Consensus 591 ~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~ 669 (732)
++. +|++|+++++.+|...+..... . . ..+.+.... ......+|++++||+.|..++..++++
T Consensus 169 ~~~~~p~~f~~~~~~s~~~~~~~~~~---------~-~---~~~~~~~~~---~~~~~~~~~~l~~G~~D~~~~~~~~~~ 232 (275)
T 2qm0_A 169 ILFTNLNAFQNYFISSPSIWWNNKSV---------L-E---KEENLIIEL---NNAKFETGVFLTVGSLEREHMVVGANE 232 (275)
T ss_dssp HHHHCGGGCSEEEEESCCTTHHHHGG---------G-G---GTTHHHHHH---HTCSSCEEEEEEEETTSCHHHHHHHHH
T ss_pred HHHhCchhhceeEEeCceeeeChHHH---------H-H---HHHHHHhhh---cccCCCceEEEEeCCcccchhhHHHHH
Confidence 988 9999999999999876542110 0 0 001111110 023456799999999999889999999
Q ss_pred HHHHH---HhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 670 IYKAL---KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 670 ~~~~l---~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
+++.| ++.|+++++.++++++|+. .....+...+.||
T Consensus 233 ~~~~L~~~~~~g~~~~~~~~~g~~H~~----~~~~~l~~~l~~l 272 (275)
T 2qm0_A 233 LSERLLQVNHDKLKFKFYEAEGENHAS----VVPTSLSKGLRFI 272 (275)
T ss_dssp HHHHHHHCCCTTEEEEEEEETTCCTTT----HHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCceEEEEECCCCCccc----cHHHHHHHHHHHH
Confidence 99999 5678889999999999964 2344445555665
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.7e-18 Score=170.98 Aligned_cols=242 Identities=12% Similarity=0.109 Sum_probs=157.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---HHHHHHHCCCEEEEEcCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~rG~~ 536 (732)
+.+.+++.+...+..+.+++ |+. . .|+||++||++.......|.. ..+.+++.|+.|+++|.+|..
T Consensus 5 ~~~~~~~~s~~~~~~~~v~~--~p~-------~--~~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~ 73 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQF--QGG-------G--PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSS 73 (280)
T ss_dssp CEEEEEEEETTTTEEEEEEE--ECC-------S--SSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTC
T ss_pred eEEEEEEECcccCceeEEEE--cCC-------C--CCEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCc
Confidence 34667777664677777664 332 2 258999999853222233332 235677789999999987654
Q ss_pred CCChhhHHhhc-cCCCcccHHHH--HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH
Q 004735 537 GYGREFRERLL-GRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM 612 (732)
Q Consensus 537 g~g~~~~~~~~-~~~~~~~~~D~--~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~ 612 (732)
.+......... +........+. .+.+.++.++..+++++++|+||||||++++.++. +|++|+++++++|..++..
T Consensus 74 ~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~ 153 (280)
T 1dqz_A 74 FYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSE 153 (280)
T ss_dssp TTSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTS
T ss_pred cccCCCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccC
Confidence 43211000000 00011223332 24445555544567789999999999999999988 9999999999999887543
Q ss_pred HHh--hcchh----hhhhhhhhcCC--hhhhhhcCccccCCCC---CCCEEEEEeCCCC--------------ccChHHH
Q 004735 613 LRA--ETHKF----ESRYIDNLVGS--EKDYYEKSPINFVDKF---SCPIILFQGLEDK--------------VVPPDQA 667 (732)
Q Consensus 613 ~~~--~~~~~----~~~~~~~~~~~--~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~--------------~v~~~~~ 667 (732)
... ..... ........+++ ...+...+|...+.++ .+|+++.||+.|. .++..++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~ 233 (280)
T 1dqz_A 154 SWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTN 233 (280)
T ss_dssp TTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHhhhccCcCHHHhcCCCCchhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHHH
Confidence 100 00000 00001222232 2356667777665554 5799999999997 5788899
Q ss_pred HHHHHHHHhCC-CCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 668 RKIYKALKENG-LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 668 ~~~~~~l~~~g-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+++++.|++.| +++++.++++++|.+ ..+...+...+.||.+.|+
T Consensus 234 ~~~~~~L~~~g~~~~~~~~~~~g~H~~---~~w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 234 QTFRDTYAADGGRNGVFNFPPNGTHSW---PYWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHHHHTTCCSEEEECCSCCCSSH---HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEEecCCCccCh---HHHHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999899975 3456777788888888775
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-18 Score=168.80 Aligned_cols=203 Identities=17% Similarity=0.195 Sum_probs=131.0
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCccc-HHHHHHHHHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~-~~D~~~~i~~l~~~~~~d~~ 574 (732)
|.||++||.+.+ ...|...++.|+++||.|+++|+||.+... ... ..+...+ .+|+.++++++.+.+ .+
T Consensus 17 ~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~GhG~s~---~~~--~~~~~~~~~~d~~~~~~~l~~~~---~~ 86 (247)
T 1tqh_A 17 RAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGHGVPP---EEL--VHTGPDDWWQDVMNGYEFLKNKG---YE 86 (247)
T ss_dssp CEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTTSSSCH---HHH--TTCCHHHHHHHHHHHHHHHHHHT---CC
T ss_pred cEEEEECCCCCC--hHHHHHHHHHHHHCCCEEEecccCCCCCCH---HHh--cCCCHHHHHHHHHHHHHHHHHcC---CC
Confidence 679999997433 345667788898999999999999866321 111 1111111 355666677776543 35
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC---HHHHHhhcchhhhh--------------hhhhhcCC----h
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSMLRAETHKFESR--------------YIDNLVGS----E 632 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d---~~~~~~~~~~~~~~--------------~~~~~~~~----~ 632 (732)
++.|+||||||.+++.++. +| ++++|+.++... ..........+... ........ .
T Consensus 87 ~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (247)
T 1tqh_A 87 KIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTL 164 (247)
T ss_dssp CEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTH
T ss_pred eEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhhhhcccCCCHHHH
Confidence 8999999999999999988 77 888876544322 11110000000000 00000000 0
Q ss_pred hhhhh--cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 633 KDYYE--KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 633 ~~~~~--~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
..+.. .+....+.++++|+|+++|++|.++|++.++++++.++. .++++++++++||.....+..+++.+.+.+||
T Consensus 165 ~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~~~~~~~~~i~~Fl 242 (247)
T 1tqh_A 165 KALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIES--PVKQIKWYEQSGHVITLDQEKDQLHEDIYAFL 242 (247)
T ss_dssp HHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCCC--SSEEEEEETTCCSSGGGSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEecCCCCCCCcchHHHHHHhcCC--CceEEEEeCCCceeeccCccHHHHHHHHHHHH
Confidence 00000 112235678899999999999999999999888887753 24799999999998655445678889999999
Q ss_pred HH
Q 004735 711 AR 712 (732)
Q Consensus 711 ~~ 712 (732)
++
T Consensus 243 ~~ 244 (247)
T 1tqh_A 243 ES 244 (247)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-17 Score=187.27 Aligned_cols=310 Identities=14% Similarity=0.126 Sum_probs=195.4
Q ss_pred cCceEEcC-CCcEEEEeecCCCC---CceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCe
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEA---GRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~ 166 (732)
+..+.||| |+.+++........ ....++.++..+| +.+.+.... ..... .....|++++..|+|... ++
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~~~-~~~~~---~~~~~~SPdG~~la~~~~--~~ 135 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-DPQSLDPPE-VSNAK---LQYAGWGPKGQQLIFIFE--NN 135 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-CCEECCCTT-CCSCC---CSBCCBCSSTTCEEEEET--TE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC-ceEeccCCc-ccccc---ccccEECCCCCEEEEEEC--Ce
Confidence 67899999 88888875432111 0134555555543 444443221 10000 112346667778999875 67
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCe----------------EeeceeecCCCCEEEEEEeccCCC---------------
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLV----------------SYADGIFDPRFNRYVTVREDRRQD--------------- 215 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~----------------~~~~~~~spdG~~l~~~~~~~~~~--------------- 215 (732)
||++++++ ++.++++..... .. +...+.|||||++|++...+....
T Consensus 136 i~~~~~~~--g~~~~~~~~~~~-~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 212 (723)
T 1xfd_A 136 IYYCAHVG--KQAIRVVSTGKE-GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT 212 (723)
T ss_dssp EEEESSSS--SCCEEEECCCBT-TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred EEEEECCC--CceEEEecCCCC-CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCc
Confidence 99999998 788888764211 11 124688999999999987653210
Q ss_pred ----------CCCceeEEEEEEcCCCCcccc-EEcccC------CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEE
Q 004735 216 ----------ALNSTTEIVAIALNGQNIQEP-KVLVSG------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG 278 (732)
Q Consensus 216 ----------~~~~~~~l~~~d~~~~~~~~~-~~lt~~------~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~ 278 (732)
.......|+++|+++++ . ++++.. ......+.|||||+.|++...+. . ....|+++
T Consensus 213 ~~~~~~~~~G~~~~~~~l~~~d~~~~~---~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~---~~~~i~~~ 285 (723)
T 1xfd_A 213 VKPYHYPKAGSENPSISLHVIGLNGPT---HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA-Q---NVSILTLC 285 (723)
T ss_dssp CEEEECCBTTSCCCEEEEEEEESSSSC---CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT-S---CEEEEEEE
T ss_pred ceeccCCCCCCCCCeeEEEEEECCCCc---eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC-C---CeEEEEEE
Confidence 00123589999999886 4 566543 33456789999999887665332 2 35779999
Q ss_pred EecCCCceeeeEEecCCCCCcccc-CcCceeCCCCc-EEEE-EeccCC----eeeEEEEe-ccCCe---EEEeccccccc
Q 004735 279 YISENGDVYKRVCVAGFDPTIVES-PTEPKWSSKGE-LFFV-TDRKNG----FWNLHKWI-ESNNE---VLAIYSLDAEF 347 (732)
Q Consensus 279 d~~~~g~~~~~~~~~~~~~~~~~~-~~~~~wspDg~-l~~~-~~~~~g----~~~l~~~d-~~~g~---~~~l~~~~~~~ 347 (732)
|++ +|+...+...... .|... ...+.|||||+ |++. +.. .+ ..+||++| ..+++ .+.|+.+....
T Consensus 286 d~~-~g~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 286 DAT-TGVCTKKHEDESE--AWLHRQNEEPVFSKDGRKFFFIRAIP-QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp ETT-TCCEEEEEEEECS--SCCCCCCCCCEECTTSCSEEEEEEEC-CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred eCC-CCcceEEEEeccC--CEEeccCCCceEcCCCCeEEEEEecc-cCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 998 7776333222111 11111 14789999999 8887 554 55 67899999 57777 67776543332
Q ss_pred CC-CceeecccceeeeeecCCCCEEEEEEEEC--CEEEEEEEECCCC-ceEEeccC---CCceEEe--eEeCCEEEEEEe
Q 004735 348 SR-PLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGH-SLSLLDIP---FTDIDNI--TLGNDCLFVEGA 418 (732)
Q Consensus 348 ~~-~~w~~~~~~~~~~~~~~~~~~l~~~s~~~--g~~~ly~~~~~~~-~~~~lt~~---~~~v~~~--~~~~~~~~~~~~ 418 (732)
.. +.|++ +++.|++.+..+ +..+||.++.+++ +.+.|+.. ...+..+ +.+++.+++..+
T Consensus 362 ~~~~~~sp------------dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 362 TKILAYDE------------KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEEEEEET------------TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EeeeEEcC------------CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 22 34554 889999888766 7789999998775 55667642 3334444 556677777777
Q ss_pred CCCCCcEEEEEEcCCC
Q 004735 419 SGVEPSSVAKVTLDDH 434 (732)
Q Consensus 419 ~~~~~~~ly~~dl~~~ 434 (732)
+++.|..++. +..++
T Consensus 430 ~~~~p~~~~~-~~~~~ 444 (723)
T 1xfd_A 430 GPGVPMVTVH-NTTDK 444 (723)
T ss_dssp SSSSCCEEEE-ETTTC
T ss_pred CCCCCeEEEE-ECCCC
Confidence 7777765543 55443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-17 Score=187.56 Aligned_cols=307 Identities=11% Similarity=0.078 Sum_probs=197.8
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCC--cccCCCC-C-------cccccccccCCceeEEECC-EEE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKE-Y-------AVRTTAQEYGGGAFRIFGD-TVI 158 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~l~~~~-~-------~~~~~~~~~g~~~~~~~~~-~i~ 158 (732)
.+.++.|+ |+.+++... ++ | .++..+| +. +.++... . ....++.......++++++ .++
T Consensus 27 ~~~~~~w~-g~~~~~~~~----~~---i-~~d~~tg-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~ 96 (706)
T 2z3z_A 27 YVVGLQWM-GDNYVFIEG----DD---L-VFNKANG-KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVV 96 (706)
T ss_dssp -CTTCEEE-TTEEEEEET----TE---E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEE
T ss_pred cCCCCcCc-CCeEEEEeC----Cc---E-EEECCCC-cEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEE
Confidence 45678999 887777542 23 3 5555554 33 3333211 0 0001112234556666654 677
Q ss_pred EEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC-----CCc
Q 004735 159 FSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-----QNI 233 (732)
Q Consensus 159 f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~-----~~~ 233 (732)
+.. ++.|+++|+++ ++.++++.. ......++|||||++|+|+.+ .+|+++++++ ++
T Consensus 97 ~~~--~~~i~~~d~~~--~~~~~l~~~----~~~~~~~~~SpdG~~la~~~~----------~~i~v~~~~~~~~~~g~- 157 (706)
T 2z3z_A 97 LFT--QGGLVGFDMLA--RKVTYLFDT----NEETASLDFSPVGDRVAYVRN----------HNLYIARGGKLGEGMSR- 157 (706)
T ss_dssp EEE--TTEEEEEETTT--TEEEEEECC----TTCCTTCEECTTSSEEEEEET----------TEEEEEECBCTTSCCCC-
T ss_pred EEE--CCEEEEEECCC--CceEEccCC----cccccCCcCCCCCCEEEEEEC----------CeEEEEecCcccccCCC-
Confidence 774 47899999987 777777754 233577899999999998743 5899999998 88
Q ss_pred cccEEcccCCCc---------------eeccccCCCCCeEEEEeccCCCC-------------------------CCCcc
Q 004735 234 QEPKVLVSGSDF---------------YAFPRMDPRGERMAWIEWHHPNM-------------------------PWDKA 273 (732)
Q Consensus 234 ~~~~~lt~~~~~---------------~~~p~~SPDG~~la~~~~~~~~~-------------------------~~~~~ 273 (732)
.++++..... ...+.|||||++|+|.+.+.... .....
T Consensus 158 --~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 158 --AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp --CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred --cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 7777654332 36789999999999998543211 11346
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEec-cCCeeeEEEEeccCC-eEEEecccccccCCC
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR-KNGFWNLHKWIESNN-EVLAIYSLDAEFSRP 350 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~-~~g~~~l~~~d~~~g-~~~~l~~~~~~~~~~ 350 (732)
+|+++|++ +|+...+....... ..+..+.|||||+ |++.+.. ......|+++|+.++ +.+.+..+. ..
T Consensus 236 ~l~~~d~~-~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~----~~ 306 (706)
T 2z3z_A 236 TVGIYHLA-TGKTVYLQTGEPKE----KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET----DK 306 (706)
T ss_dssp EEEEEETT-TTEEEECCCCSCTT----CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE----CS
T ss_pred EEEEEECC-CCceEeeccCCCCc----eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc----CC
Confidence 79999998 77653322111222 4567899999999 7775543 234568999999998 666665321 11
Q ss_pred ceeecccceeeeeecCC--CCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEE-e-eEeCCEEEEEEeCCCCC--c
Q 004735 351 LWVFGINSYEIIQSHGE--KNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN-I-TLGNDCLFVEGASGVEP--S 424 (732)
Q Consensus 351 ~w~~~~~~~~~~~~~~~--~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~-~-~~~~~~~~~~~~~~~~~--~ 424 (732)
.|......+.|. . ++.+++++.+++..+||.++.+++..+.|+.+.+.+.. + .+++++.+++.++.+.+ .
T Consensus 307 ~~~~~~~~~~~s----p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 307 HYVEPLHPLTFL----PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp SCCCCCSCCEEC----TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred CeECccCCceee----cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 222111223443 4 56678888888889999999888888999988877765 3 44455555555555553 4
Q ss_pred EEEEEEcCCCcceeee
Q 004735 425 SVAKVTLDDHKLKAVD 440 (732)
Q Consensus 425 ~ly~~dl~~~~~~~lt 440 (732)
.||.+|+++++.++|+
T Consensus 383 ~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLT 398 (706)
T ss_dssp EEEEEETTCCCCEESC
T ss_pred EEEEEEcCCCCceecc
Confidence 7999999998877775
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=168.41 Aligned_cols=217 Identities=20% Similarity=0.255 Sum_probs=133.8
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 545 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~ 545 (732)
+... +|.++++..+- . .|.||++||.+.. ...|...+..|+++||.|+++|+||.+......
T Consensus 3 ~~~~-~g~~l~y~~~G-----------~-g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~--- 64 (271)
T 3ia2_A 3 FVAK-DGTQIYFKDWG-----------S-GKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPW--- 64 (271)
T ss_dssp EECT-TSCEEEEEEES-----------S-SSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTSTTSCCCS---
T ss_pred EEcC-CCCEEEEEccC-----------C-CCeEEEECCCCCc--HHHHHHHHHHHHhCCceEEEecCCCCccCCCCC---
Confidence 4555 88888866552 1 2568899998443 456777788899999999999999866543211
Q ss_pred hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCH-------------
Q 004735 546 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADL------------- 610 (732)
Q Consensus 546 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~------------- 610 (732)
....+++..+.+..+++.. +.+++.++||||||++++.+++ .|++++++++.++....
T Consensus 65 -----~~~~~~~~a~d~~~~l~~l--~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 137 (271)
T 3ia2_A 65 -----TGNDYDTFADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPL 137 (271)
T ss_dssp -----SCCSHHHHHHHHHHHHHHH--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCH
T ss_pred -----CCCCHHHHHHHHHHHHHHh--CCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccccH
Confidence 1122333333333333331 3468999999999987766555 59999999998764311
Q ss_pred HHH---Hhh----cchhhhhhhhhhc----------------------CCh-------hhhhhcCccccCCCCCCCEEEE
Q 004735 611 SML---RAE----THKFESRYIDNLV----------------------GSE-------KDYYEKSPINFVDKFSCPIILF 654 (732)
Q Consensus 611 ~~~---~~~----~~~~~~~~~~~~~----------------------~~~-------~~~~~~sp~~~~~~i~~P~Lii 654 (732)
..+ ... ...+...+..... ... ..+...+....+.++++|+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lvi 217 (271)
T 3ia2_A 138 DVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVI 217 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCCCCCEEEE
Confidence 000 000 0000000000000 000 0011112223467899999999
Q ss_pred EeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 655 QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 655 ~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+|++|.++|++...++...+. .+.++++++++||.+. .+..+++.+.+.+||+
T Consensus 218 ~G~~D~~~p~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 218 HGDGDQIVPFETTGKVAAELI---KGAELKVYKDAPHGFA-VTHAQQLNEDLLAFLK 270 (271)
T ss_dssp EETTCSSSCGGGTHHHHHHHS---TTCEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred EeCCCCcCChHHHHHHHHHhC---CCceEEEEcCCCCccc-ccCHHHHHHHHHHHhh
Confidence 999999999987555544442 2569999999999753 4566788888888875
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=167.91 Aligned_cols=186 Identities=17% Similarity=0.184 Sum_probs=136.0
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHH
Q 004735 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN 556 (732)
Q Consensus 477 ~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~ 556 (732)
+.+|.|.... ..+.+.|+||++||+++ ....+...++.|+++||.|+++|+||+. ...
T Consensus 34 ~~~~~p~~~~---~~g~~~p~vv~~HG~~~--~~~~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~~~ 91 (258)
T 2fx5_A 34 CRIYRPRDLG---QGGVRHPVILWGNGTGA--GPSTYAGLLSHWASHGFVVAAAETSNAG-----------------TGR 91 (258)
T ss_dssp EEEEEESSTT---GGGCCEEEEEEECCTTC--CGGGGHHHHHHHHHHTCEEEEECCSCCT-----------------TSH
T ss_pred EEEEeCCCCc---ccCCCceEEEEECCCCC--CchhHHHHHHHHHhCCeEEEEecCCCCc-----------------cHH
Confidence 5677776411 00226799999999854 3456677888999999999999999641 124
Q ss_pred HHHHHHHHHHhc---------CCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchhhhhhhhh
Q 004735 557 DCCSCATFLVGS---------GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDN 627 (732)
Q Consensus 557 D~~~~i~~l~~~---------~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 627 (732)
|+..+++++.+. ..++.++++++|||+||++++.++ .+++++++++.+|.....
T Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a-~~~~v~~~v~~~~~~~~~---------------- 154 (258)
T 2fx5_A 92 EMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG-QDTRVRTTAPIQPYTLGL---------------- 154 (258)
T ss_dssp HHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT-TSTTCCEEEEEEECCSST----------------
T ss_pred HHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc-cCcCeEEEEEecCccccc----------------
Confidence 455556655442 245678999999999999998887 566799999988754310
Q ss_pred hcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHH-HHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHH
Q 004735 628 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQ 706 (732)
Q Consensus 628 ~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 706 (732)
. .....+.++++|+|+++|++|.++++.. ..++++. .+.+++++++++++|.+.. +....+.+.+
T Consensus 155 ~----------~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~-~~~~~~~~~i 220 (258)
T 2fx5_A 155 G----------HDSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRR---ANVPVFWGERRYVSHFEPV-GSGGAYRGPS 220 (258)
T ss_dssp T----------CCGGGGGCCSSCEEEEEETTCSSSCHHHHTHHHHHH---CSSCEEEEEESSCCTTSST-TTCGGGHHHH
T ss_pred c----------cchhhhccCCCCEEEEEcCCCcccCchhhHHHHHhc---cCCCeEEEEECCCCCcccc-chHHHHHHHH
Confidence 0 0012355678999999999999999986 7777766 3457899999999998644 3345778889
Q ss_pred HHHHHHHhC
Q 004735 707 MVFFARVVG 715 (732)
Q Consensus 707 ~~fl~~~l~ 715 (732)
.+||+++|+
T Consensus 221 ~~fl~~~l~ 229 (258)
T 2fx5_A 221 TAWFRFQLM 229 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998885
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=171.71 Aligned_cols=183 Identities=14% Similarity=0.056 Sum_probs=133.6
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEE--cCCCCCCCChhhHHhhccCCC----cccHHHHHHHHHHHH
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV--NYGGSTGYGREFRERLLGRWG----IVDVNDCCSCATFLV 566 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~--d~rG~~g~g~~~~~~~~~~~~----~~~~~D~~~~i~~l~ 566 (732)
++.|+||++||++.. ...|...++.|++ +|.|+++ |++|.++++..... ....+. ....+|+.++++++.
T Consensus 60 ~~~p~vv~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGD--ENQFFDFGARLLP-QATILSPVGDVSEHGAARFFRRT-GEGVYDMVDLERATGKMADFIKANR 135 (251)
T ss_dssp TTSCEEEEECCTTCC--HHHHHHHHHHHST-TSEEEEECCSEEETTEEESSCBC-GGGCBCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCC--HhHHHHHHHhcCC-CceEEEecCCcCCCCCcccccCC-CCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 356999999998533 3345566676765 5999999 67765543210000 000000 112677778888887
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCC
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 645 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 645 (732)
++. +.++++|+|||+||++++.++. +|++++++|+++|..+... .....
T Consensus 136 ~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~----------------------------~~~~~ 185 (251)
T 2r8b_A 136 EHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP----------------------------KISPA 185 (251)
T ss_dssp HHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC----------------------------CCCCC
T ss_pred hcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc----------------------------ccccc
Confidence 764 6789999999999999999988 9999999999999865321 01223
Q ss_pred CCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 646 ~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.+++|+|+++|++|.++++++++++++.+++.+.++++ ++++++|.+. .+..+.+.+||+++|+
T Consensus 186 ~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l~ 249 (251)
T 2r8b_A 186 KPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAYGG 249 (251)
T ss_dssp CTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGGC-
T ss_pred ccCCcEEEeccCCCccCCHHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999987777776 6667899873 3456888999999886
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-17 Score=170.44 Aligned_cols=299 Identities=10% Similarity=0.054 Sum_probs=188.9
Q ss_pred cCCHHHHhccCCccCceEEcCCCcEEEEeecCC---CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC
Q 004735 78 PLTADVVSGASKRLGGTAVDGHGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG 154 (732)
Q Consensus 78 ~~~~~~i~~~~~~~~~~~~~pg~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~ 154 (732)
+++++.++.. ..+..++++ |++++|+..... ......||.++..+| +.+.+ . . .....|++++
T Consensus 5 ~~~~~~l~~~-~~~~~~~~d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l---~-~-------~~~~~~SpDg 70 (347)
T 2gop_A 5 EWNEKTFAKF-AYLSDPRTK-GELVAYVLTKANLKDNKYENTIVIENLKNN-ARRFI---E-N-------ATMPRISPDG 70 (347)
T ss_dssp -----CCCCS-CEEEEEEEE-TTEEEEEEEEEETTTTEEEEEEEEEETTTC-CEEEE---E-S-------CEEEEECTTS
T ss_pred cCCcccceee-EEcccceEC-CcEEEEEEeecCcccCCccceEEEEeCCCC-ceEEc---c-c-------CCCeEECCCC
Confidence 4666666654 456778885 999999864321 123556777776643 43333 0 0 0112344445
Q ss_pred CEEEEEeCCC----CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCC---------------
Q 004735 155 DTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD--------------- 215 (732)
Q Consensus 155 ~~i~f~~~~~----~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~--------------- 215 (732)
..|+|..... .+||++++++ ++.++++.. .. ...+.|||||++|+|...+....
T Consensus 71 ~~la~~~~~~~~~~~~l~~~~~~~--g~~~~l~~~----~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g 143 (347)
T 2gop_A 71 KKIAFMRANEEKKVSEIWVADLET--LSSKKILEA----KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD 143 (347)
T ss_dssp SEEEEEEEETTTTEEEEEEEETTT--TEEEEEEEE----SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred CEEEEEEeccCCCcceEEEEECCC--CceEEEEcC----CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence 6888886543 3699999987 888888865 23 67889999999999987531100
Q ss_pred ---CCCceeEEEEEEcCCCCcccc-EEcccCCCceeccccCCCCCeEEEEeccCCCCC--CCccEEEEEEecCCCceeee
Q 004735 216 ---ALNSTTEIVAIALNGQNIQEP-KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP--WDKAELWVGYISENGDVYKR 289 (732)
Q Consensus 216 ---~~~~~~~l~~~d~~~~~~~~~-~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~--~~~~~l~v~d~~~~g~~~~~ 289 (732)
......+||++|+++++ . ++++. . ....+.||||| |+|+.......+ ....+||++| +|+.+.+
T Consensus 144 ~~~~~~~~~~l~~~d~~~~~---~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d---~~~~~~l 213 (347)
T 2gop_A 144 LGFFDGEKTTFWIFDTESEE---VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE---DGKEEKM 213 (347)
T ss_dssp ------CEEEEEEEETTTTE---EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE---TTEEEEE
T ss_pred cccccCccceEEEEECCCCe---EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC---CCceEEe
Confidence 00114789999999988 6 77776 3 56678999999 777764332211 1145789888 4555333
Q ss_pred EEecCCCCCccccCcCceeCCCCc-EEEEEeccC----CeeeEEEEeccCCeEEEeccc-ccccCCCceeecccceeeee
Q 004735 290 VCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN----GFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQ 363 (732)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~----g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~ 363 (732)
. .. . . ...+||||+ |+|.+.... ....|+.+| +++.+.++.. ...+.. ...|
T Consensus 214 ~--~~-~----~---~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~--------~~~~-- 271 (347)
T 2gop_A 214 F--EK-V----S---FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQ--------AKIK-- 271 (347)
T ss_dssp E--EE-E----S---EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEE--------EEEE--
T ss_pred c--cC-c----c---eeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCC--------ccEE--
Confidence 2 22 1 1 123499999 888876521 246899998 7777777643 222221 0223
Q ss_pred ecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 364 SHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 364 ~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
.++ +++++..++..+|| ++ +++.+.++.+...+..+.... .+++..++...+.+||.+| ++.++||
T Consensus 272 ---sdg-~~~~~~~~~~~~l~-~~--~g~~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~---g~~~~lt 337 (347)
T 2gop_A 272 ---DGK-VYFTLFEEGSVNLY-IW--DGEIKPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD---GEEKQLT 337 (347)
T ss_dssp ---TTE-EEEEEEETTEEEEE-EE--SSSEEEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES---SSEEECC
T ss_pred ---cCc-EEEEEecCCcEEEE-Ec--CCceEEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC---CcEEEec
Confidence 223 88888889999999 98 466677776666677774334 6888888888888999997 5555544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-17 Score=186.03 Aligned_cols=256 Identities=13% Similarity=0.088 Sum_probs=177.6
Q ss_pred CCceeEEECCEEEEEeCC---C--CeEEEEeCCCCCCCceecCCCCCCCCeE-----e--eceeec--CCCCE-EEEEEe
Q 004735 146 GGGAFRIFGDTVIFSNYK---D--QRLYKHSIDSKDSSPLPITPDYGEPLVS-----Y--ADGIFD--PRFNR-YVTVRE 210 (732)
Q Consensus 146 g~~~~~~~~~~i~f~~~~---~--~~l~~~d~~~~~~~~~~lt~~~~~~~~~-----~--~~~~~s--pdG~~-l~~~~~ 210 (732)
.....+++++.++|.... + ..||.+ ..+ +..++|+....+ .+ + ..+.|+ |||++ |+|+..
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRR-RAD--GAEESALPAPWN--VRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEE-CTT--SCEEESSCTTCC--BCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEE-CCC--CCcceeCCCCcc--ccccccccCCccceeeeecCCCeEEEEEEC
Confidence 345567788999888752 2 267877 444 778899876311 11 1 134455 99999 888754
Q ss_pred ccCCCCCCceeEEEEEEcC--C-CCccccEEccc-----CCCceeccccCCCCCeEEEEeccCCC-CC-CCccEEEEEEe
Q 004735 211 DRRQDALNSTTEIVAIALN--G-QNIQEPKVLVS-----GSDFYAFPRMDPRGERMAWIEWHHPN-MP-WDKAELWVGYI 280 (732)
Q Consensus 211 ~~~~~~~~~~~~l~~~d~~--~-~~~~~~~~lt~-----~~~~~~~p~~SPDG~~la~~~~~~~~-~~-~~~~~l~v~d~ 280 (732)
. ..+||+++++ + ++ .++|+. .......++|||||++|+|.+.+... .+ ....+|+++|+
T Consensus 100 ~--------~~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~ 168 (662)
T 3azo_A 100 G--------DQRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL 168 (662)
T ss_dssp T--------TCCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred C--------CCeEEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence 3 1589999998 5 77 788886 34456789999999999999865211 00 13468999999
Q ss_pred cCC------CceeeeEEec-CCCCCccccCcCceeCCCCc-EEEEEeccC----CeeeEEEEecc-CC---eEEEeccc-
Q 004735 281 SEN------GDVYKRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKN----GFWNLHKWIES-NN---EVLAIYSL- 343 (732)
Q Consensus 281 ~~~------g~~~~~~~~~-~~~~~~~~~~~~~~wspDg~-l~~~~~~~~----g~~~l~~~d~~-~g---~~~~l~~~- 343 (732)
+ + |+. +.+. ... ..+..+.|||||+ |+|.+.... +...|+++|++ +| +.+.++..
T Consensus 169 ~-~~~~~~~~~~---~~l~~~~~----~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 169 D-GSAAADRSAV---RELSDDAH----RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp T-STTTTCGGGS---EESSCSCS----SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred C-CCccccCCce---eEEEecCC----CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 8 5 554 3333 333 4567899999999 888876522 34689999998 57 67777643
Q ss_pred ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCce---------EEe-eEeCCEE
Q 004735 344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI---------DNI-TLGNDCL 413 (732)
Q Consensus 344 ~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v---------~~~-~~~~~~~ 413 (732)
......+.|++ ||+ +++++++++..+||++++++++.++++.....+ ..+ ..+++++
T Consensus 241 ~~~~~~~~~sp------------dg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 241 EEAIAQAEWAP------------DGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp TBCEEEEEECT------------TSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred CceEcceEECC------------CCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEE
Confidence 33445566765 677 888888888889999999889988887653322 223 2346677
Q ss_pred EEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 414 FVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 414 ~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
++.... ....||.+|+++++.++|+
T Consensus 308 ~~~~~~--~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 308 AVVHGK--GAAVLGILDPESGELVDAA 332 (662)
T ss_dssp EEEEBS--SSCEEEEEETTTTEEEECC
T ss_pred EEEEEc--CccEEEEEECCCCcEEEec
Confidence 666654 6778999999988877665
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=177.74 Aligned_cols=193 Identities=16% Similarity=0.213 Sum_probs=134.2
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh--------------h-------HH---hhc
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE--------------F-------RE---RLL 547 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~--------------~-------~~---~~~ 547 (732)
+++.|+||++||+++. ...+...++.|+++||.|+++|+||.+..... + .. ...
T Consensus 95 ~~~~P~Vv~~HG~~~~--~~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 172 (383)
T 3d59_A 95 GEKYPLVVFSHGLGAF--RTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLKQEEETHIR 172 (383)
T ss_dssp SSCEEEEEEECCTTCC--TTTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCC--chHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCceeeeccccCcccchhhh
Confidence 4578999999998544 34567789999999999999999986543210 0 00 000
Q ss_pred cCCCcccHHHHHHHHHHHHh--------------------cCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCc
Q 004735 548 GRWGIVDVNDCCSCATFLVG--------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGV 607 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~--------------------~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~ 607 (732)
...-....+|+.++++++.+ ...+|.+||+++|||+||.+++.++.++++++++|+++|.
T Consensus 173 ~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~v~a~v~~~~~ 252 (383)
T 3d59_A 173 NEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQRFRCGIALDAW 252 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHHhhCCCccEEEEeCCc
Confidence 00000125788899999875 4567788999999999999999998855579999999885
Q ss_pred CCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 608 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 608 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
.... .. ..+.++++|+|++||++|..+ .. .+..+.+.+.+.+.++++++
T Consensus 253 ~~p~-------------------~~---------~~~~~i~~P~Lii~g~~D~~~--~~-~~~~~~l~~~~~~~~~~~~~ 301 (383)
T 3d59_A 253 MFPL-------------------GD---------EVYSRIPQPLFFINSEYFQYP--AN-IIKMKKCYSPDKERKMITIR 301 (383)
T ss_dssp CTTC-------------------CG---------GGGGSCCSCEEEEEETTTCCH--HH-HHHHHTTCCTTSCEEEEEET
T ss_pred cCCC-------------------ch---------hhhccCCCCEEEEecccccch--hh-HHHHHHHHhcCCceEEEEeC
Confidence 3200 00 112467899999999999753 22 23345666667789999999
Q ss_pred CCCccCCC---------------------cccH-HHHHHHHHHHHHHHhCCC
Q 004735 688 GEQHGFRK---------------------AENI-KFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 688 ~~gH~~~~---------------------~~~~-~~~~~~~~~fl~~~l~~~ 717 (732)
+++|.+.. ++.. +...+.+++||+++|+..
T Consensus 302 g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~~~ 353 (383)
T 3d59_A 302 GSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLGLH 353 (383)
T ss_dssp TCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99998521 1112 233357999999999853
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=162.86 Aligned_cols=203 Identities=15% Similarity=0.075 Sum_probs=136.8
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-----cccHHHHHHHHC----CCEEE
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----ILNLSIQYWTSR----GWAFV 528 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-----~~~~~~~~l~~~----G~~v~ 528 (732)
..+.+.+++.+. + ..+.+++|.|.+.. +.+++|+||++||++.....+ .+...++.|+++ +|+|+
T Consensus 38 ~g~~~~~~~~s~-~-~~~~~~vy~P~~~~----~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv 111 (297)
T 1gkl_A 38 AGRIVKETYTGI-N-GTKSLNVYLPYGYD----PNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVV 111 (297)
T ss_dssp CCEEEEEEEEET-T-EEEEEEEEECTTCC----TTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEE
T ss_pred CceEEEEEEEcC-C-CEEEEEEEeCCCCC----CCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEE
Confidence 345678888886 5 48999999998732 246789999999986543322 123456667776 49999
Q ss_pred EEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC------------CCCCcEEEEEcChHHHHHHHHHh-CC
Q 004735 529 DVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK------------ADEKRLCITGGSAGGYTTLAALA-FR 595 (732)
Q Consensus 529 ~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~------------~d~~ri~i~G~S~GG~~a~~~~~-~p 595 (732)
+||++|..+.+..+... ..+|+ +.++.+... .|+++++|+|+||||++++.++. +|
T Consensus 112 ~pd~~~~~~~~~~~~~~--------~~~~l---~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p 180 (297)
T 1gkl_A 112 TPTFNGGNCTAQNFYQE--------FRQNV---IPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCL 180 (297)
T ss_dssp ECCSCSTTCCTTTHHHH--------HHHTH---HHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHT
T ss_pred EecCcCCccchHHHHHH--------HHHHH---HHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCc
Confidence 99998754433333211 12333 444444332 36788999999999999999988 99
Q ss_pred CcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHH
Q 004735 596 DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 675 (732)
Q Consensus 596 ~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~ 675 (732)
++|+++++++|...+...... ....+. .+... ..+.....++++.+|++|.. ..+++++.+.|+
T Consensus 181 ~~f~~~v~~sg~~~~~~~~~~----~~~~~~-------~~~~~---~~~~~~~~~l~~~~G~~D~~--~~~~~~l~~~L~ 244 (297)
T 1gkl_A 181 DYVAYFMPLSGDYWYGNSPQD----KANSIA-------EAINR---SGLSKREYFVFAATGSEDIA--YANMNPQIEAMK 244 (297)
T ss_dssp TTCCEEEEESCCCCBSSSHHH----HHHHHH-------HHHHH---HTCCTTSCEEEEEEETTCTT--HHHHHHHHHHHH
T ss_pred hhhheeeEeccccccCCccch----hhhHHH-------HHHhh---ccCCcCcEEEEEEeCCCccc--chhHHHHHHHHH
Confidence 999999999998653211000 000000 00000 11222345677789999976 467889999999
Q ss_pred hCC----------CCEEEEEeCCCCccC
Q 004735 676 ENG----------LPVALVEYEGEQHGF 693 (732)
Q Consensus 676 ~~g----------~~~~~~~~~~~gH~~ 693 (732)
+.| +++++.++++++|.+
T Consensus 245 ~~g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 245 ALPHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp TSTTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HcCCccccccccCCceEEEECCCCCcCH
Confidence 998 589999999999975
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=171.81 Aligned_cols=199 Identities=15% Similarity=0.106 Sum_probs=141.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-------HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhh-
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-------LSIQYWTSRGWAFVDVNYGGSTGYGREFRERL- 546 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-------~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~- 546 (732)
+.+.++.|.+ .+.|.||++||++... ..|. .+++.|+++||.|+++|+||.+..+.......
T Consensus 50 ~~~~~~~p~~--------~~~~~vvl~HG~g~~~--~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~ 119 (328)
T 1qlw_A 50 MYVRYQIPQR--------AKRYPITLIHGCCLTG--MTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINA 119 (328)
T ss_dssp EEEEEEEETT--------CCSSCEEEECCTTCCG--GGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHH
T ss_pred EEEEEEccCC--------CCCccEEEEeCCCCCC--CccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCccccc
Confidence 4555566653 1236799999985433 3344 37788999999999999998665433211100
Q ss_pred ---------------------------cc-CCCc---------ccHHH------------------HHHHHHHHHhcCCC
Q 004735 547 ---------------------------LG-RWGI---------VDVND------------------CCSCATFLVGSGKA 571 (732)
Q Consensus 547 ---------------------------~~-~~~~---------~~~~D------------------~~~~i~~l~~~~~~ 571 (732)
.+ .|.. ..+++ +.+++..++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-- 197 (328)
T 1qlw_A 120 VKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL-- 197 (328)
T ss_dssp HHTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH--
T ss_pred ccccccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh--
Confidence 00 0000 00222 555566665542
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCC
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCP 650 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P 650 (732)
++++++|||+||.+++.++. +|++++++|+++|... ..+......+++|
T Consensus 198 --~~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~----------------------------~~~~~~~~~~~~P 247 (328)
T 1qlw_A 198 --DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC----------------------------PKPEDVKPLTSIP 247 (328)
T ss_dssp --TSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC----------------------------CCGGGCGGGTTSC
T ss_pred --CCceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC----------------------------CCHHHHhhccCCC
Confidence 38999999999999999988 9999999999998641 0001112235689
Q ss_pred EEEEEeCCCCccCh-----HHHHHHHHHHHhCCCCEEEEEeCCCC-----ccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 651 IILFQGLEDKVVPP-----DQARKIYKALKENGLPVALVEYEGEQ-----HGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 651 ~Lii~G~~D~~v~~-----~~~~~~~~~l~~~g~~~~~~~~~~~g-----H~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+|+++|++|.++++ ++++++++.+++.|.++++++++++| |.+....+..++.+.+.+||++++.
T Consensus 248 vLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl~~~~~ 322 (328)
T 1qlw_A 248 VLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRNTA 322 (328)
T ss_dssp EEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHTCC
T ss_pred EEEEeccCCccccchhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHHHhccc
Confidence 99999999999996 89999999999999899999999665 9776555578899999999999876
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-17 Score=172.70 Aligned_cols=232 Identities=18% Similarity=0.174 Sum_probs=147.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-----------cccHHHH---HHHHCCCEEEEEcCCC--
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----------ILNLSIQ---YWTSRGWAFVDVNYGG-- 534 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-----------~~~~~~~---~l~~~G~~v~~~d~rG-- 534 (732)
+|.++++..+.+.+ ....|.||++||.+...... .|...+. .|.+.||.|+++|+||
T Consensus 29 ~g~~l~y~~~g~~~-------~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~ 101 (366)
T 2pl5_A 29 SPVVIAYETYGTLS-------SSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGC 101 (366)
T ss_dssp SSEEEEEEEEECCC-------TTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCS
T ss_pred cCceeeEEeccCcC-------CCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcc
Confidence 45577766665533 22358999999986554321 3443332 3457899999999998
Q ss_pred CCCCChhhHHhh-----ccCCCcccHHHHHHHHHHHHhcCCCCCCcE-EEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 535 STGYGREFRERL-----LGRWGIVDVNDCCSCATFLVGSGKADEKRL-CITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 535 ~~g~g~~~~~~~-----~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri-~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
.+..+....... ...+.....+++.+.+..+++.. +.+++ .|+|||+||.+++.++. +|++++++|++++.
T Consensus 102 ~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~l--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 179 (366)
T 2pl5_A 102 KGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESL--GIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAST 179 (366)
T ss_dssp SSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT--TCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCC
T ss_pred cCCCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHHc--CCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccC
Confidence 333322100000 00011235677777777666653 34688 89999999999999998 99999999999987
Q ss_pred CCHHHHHhhcc-----------------------------------------hhhhhhhhhhcC----------------
Q 004735 608 ADLSMLRAETH-----------------------------------------KFESRYIDNLVG---------------- 630 (732)
Q Consensus 608 ~d~~~~~~~~~-----------------------------------------~~~~~~~~~~~~---------------- 630 (732)
........... .....++.....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (366)
T 2pl5_A 180 AEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLI 259 (366)
T ss_dssp SBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGG
T ss_pred ccCCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHH
Confidence 54321100000 000000000000
Q ss_pred ----------Chh-------hhhhcCc------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe-
Q 004735 631 ----------SEK-------DYYEKSP------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY- 686 (732)
Q Consensus 631 ----------~~~-------~~~~~sp------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~- 686 (732)
... .+...+. ...+.++++|+|+++|++|.++|++.+.++.+.+...+.+++++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (366)
T 2pl5_A 260 YQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQ 339 (366)
T ss_dssp STTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHhhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccCHHHHHHHHHHhhhcccCeEEEEeC
Confidence 000 0011111 1256788999999999999999999999999999987767899999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 687 EGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 687 ~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+++||.+.. +...++.+.+.+||++
T Consensus 340 ~~~gH~~~~-e~p~~~~~~i~~fl~~ 364 (366)
T 2pl5_A 340 SGEGHDSFL-LKNPKQIEILKGFLEN 364 (366)
T ss_dssp CCBSSGGGG-SCCHHHHHHHHHHHHC
T ss_pred CCCCcchhh-cChhHHHHHHHHHHcc
Confidence 899997643 4556888888888864
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=166.47 Aligned_cols=219 Identities=18% Similarity=0.246 Sum_probs=134.5
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 545 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~ 545 (732)
+.+. +|.++++..+.|.+ .|.||++||.+.. ...|...+..|+++||.|+++|+||.+.+...
T Consensus 3 ~~~~-~g~~l~y~~~g~~~----------~~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~---- 65 (275)
T 1a88_A 3 VTTS-DGTNIFYKDWGPRD----------GLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP---- 65 (275)
T ss_dssp EECT-TSCEEEEEEESCTT----------SCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred EEcc-CCCEEEEEEcCCCC----------CceEEEECCCCCc--hhhHHHHHHHHHHCCceEEEEcCCcCCCCCCC----
Confidence 3454 78888876664422 3679999997433 35577788889999999999999987654321
Q ss_pred hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCCH-------------
Q 004735 546 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADL------------- 610 (732)
Q Consensus 546 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d~------------- 610 (732)
.. ...+++..+.+..+++.. +.+++.++||||||.+++.+++ + |++++++|+.++....
T Consensus 66 -~~---~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 139 (275)
T 1a88_A 66 -ST---GHDMDTYAADVAALTEAL--DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPL 139 (275)
T ss_dssp -SS---CCSHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCH
T ss_pred -CC---CCCHHHHHHHHHHHHHHc--CCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccCccCcccCCH
Confidence 01 122333333333333321 2458999999999999988665 5 9999999998864210
Q ss_pred HHH---Hhh----cchhhhhhhh-hhcC-----------------------Chh-------hhhhcCccccCCCCCCCEE
Q 004735 611 SML---RAE----THKFESRYID-NLVG-----------------------SEK-------DYYEKSPINFVDKFSCPII 652 (732)
Q Consensus 611 ~~~---~~~----~~~~~~~~~~-~~~~-----------------------~~~-------~~~~~sp~~~~~~i~~P~L 652 (732)
..+ ... ...+...+.. ...+ ... .+...+....+.++++|+|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 219 (275)
T 1a88_A 140 EVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVL 219 (275)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEE
T ss_pred HHHHHHHHHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccccccCCCCEE
Confidence 000 000 0000000000 0000 000 0011112223567899999
Q ss_pred EEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+++|++|.++|+....+.+..+. .++++++++++||.+. .+..+++.+.+.+|++
T Consensus 220 ii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 220 VAHGTDDQVVPYADAAPKSAELL---ANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp EEEETTCSSSCSTTTHHHHHHHS---TTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred EEecCCCccCCcHHHHHHHHhhC---CCcEEEEcCCCCccHH-HhCHHHHHHHHHHHhh
Confidence 99999999999874444333322 2679999999999753 3567788888888885
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-16 Score=159.69 Aligned_cols=218 Identities=15% Similarity=0.184 Sum_probs=134.6
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 545 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~ 545 (732)
+.+. +|.++++..+. ..|.||++||.+.. ...|...+..|+++||.|+++|+||.+.....
T Consensus 3 ~~~~-~g~~l~y~~~g------------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~---- 63 (274)
T 1a8q_A 3 CTTR-DGVEIFYKDWG------------QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPV---- 63 (274)
T ss_dssp EECT-TSCEEEEEEEC------------SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred EEcc-CCCEEEEEecC------------CCceEEEECCCcch--HHHHHHHHHHHHhCCCeEEEEcCCCCCCCCCC----
Confidence 3454 78887755442 12679999998443 45667778889999999999999987654321
Q ss_pred hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCCH-------------
Q 004735 546 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADL------------- 610 (732)
Q Consensus 546 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d~------------- 610 (732)
. .....++..+.+..+++.. +.+++.++||||||.+++.++. + |++++++|+.++....
T Consensus 64 -~---~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 137 (274)
T 1a8q_A 64 -W---DGYDFDTFADDLNDLLTDL--DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPD 137 (274)
T ss_dssp -S---SCCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCH
T ss_pred -C---CCCcHHHHHHHHHHHHHHc--CCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccchH
Confidence 0 1123444444444444432 3468999999999999988665 5 9999999998864210
Q ss_pred HHH---Hhh----cchhhhhhhhhhcC-----------------------Chh-------hhhhcCccccCCCCCCCEEE
Q 004735 611 SML---RAE----THKFESRYIDNLVG-----------------------SEK-------DYYEKSPINFVDKFSCPIIL 653 (732)
Q Consensus 611 ~~~---~~~----~~~~~~~~~~~~~~-----------------------~~~-------~~~~~sp~~~~~~i~~P~Li 653 (732)
..+ ... ...+...+.....+ ... .+...+....+.++++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 217 (274)
T 1a8q_A 138 EVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLV 217 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEE
T ss_pred HHHHHHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcCCCCEEE
Confidence 000 000 00000000000000 000 01111223346789999999
Q ss_pred EEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHH
Q 004735 654 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA-ENIKFTLEQQMVFFA 711 (732)
Q Consensus 654 i~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~fl~ 711 (732)
++|++|.++|++...+....+. .+.++++++++||.+... +..+++.+.+.+||+
T Consensus 218 i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 218 VHGDDDQVVPIDATGRKSAQII---PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp EEETTCSSSCGGGTHHHHHHHS---TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred EecCcCCCCCcHHHHHHHHhhC---CCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 9999999999875444333321 256999999999976542 267788888888874
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=163.61 Aligned_cols=220 Identities=16% Similarity=0.180 Sum_probs=141.9
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-cccHHHHHHHHCCCEEEEEcCCCCCCCCh-h
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTGYGR-E 541 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~~~~~~~~l~~~G~~v~~~d~rG~~g~g~-~ 541 (732)
..+... +|.++++..+.|.+ .|.||++||++.+ .. .|...+..| +.||.|+++|+||.+.+.. .
T Consensus 5 ~~~~~~-~g~~l~~~~~G~~~----------~~~vvllHG~~~~--~~~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~ 70 (286)
T 2yys_A 5 IGYVPV-GEAELYVEDVGPVE----------GPALFVLHGGPGG--NAYVLREGLQDY-LEGFRVVYFDQRGSGRSLELP 70 (286)
T ss_dssp EEEEEC-SSCEEEEEEESCTT----------SCEEEEECCTTTC--CSHHHHHHHGGG-CTTSEEEEECCTTSTTSCCCC
T ss_pred eeEEeE-CCEEEEEEeecCCC----------CCEEEEECCCCCc--chhHHHHHHHHh-cCCCEEEEECCCCCCCCCCCc
Confidence 344444 78888877765422 3689999998543 34 466667777 5689999999998765432 1
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc---
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET--- 617 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~--- 617 (732)
. . .....+++..+.+..+++.. ..+++.|+||||||.+++.++. +|+ ++++|+.++...........
T Consensus 71 ~-----~-~~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~ 141 (286)
T 2yys_A 71 Q-----D-PRLFTVDALVEDTLLLAEAL--GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEA 141 (286)
T ss_dssp S-----C-GGGCCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHH
T ss_pred c-----C-cccCcHHHHHHHHHHHHHHh--CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHH
Confidence 0 0 00123455555555555442 3468999999999999999988 999 99999999865332200000
Q ss_pred ----------chhh--------hhhhhh--h---------------cC---Ch---hh--h---hhcCccccCCCCCCCE
Q 004735 618 ----------HKFE--------SRYIDN--L---------------VG---SE---KD--Y---YEKSPINFVDKFSCPI 651 (732)
Q Consensus 618 ----------~~~~--------~~~~~~--~---------------~~---~~---~~--~---~~~sp~~~~~~i~~P~ 651 (732)
..+. ..++.. . .. .+ .. + ...+....+.++++|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 221 (286)
T 2yys_A 142 AGLAPLPDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRPL 221 (286)
T ss_dssp TTCCCCSCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCCSSCE
T ss_pred hccccchhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhcCCCE
Confidence 0000 000000 0 00 00 00 0 1112233477889999
Q ss_pred EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 652 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
|+++|++|.+++++ ++++.+ +.. .++++++++||... .+..+++.+.+.+|+.+.
T Consensus 222 lvi~G~~D~~~~~~-~~~~~~-~~~----~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 276 (286)
T 2yys_A 222 YVLVGERDGTSYPY-AEEVAS-RLR----APIRVLPEAGHYLW-IDAPEAFEEAFKEALAAL 276 (286)
T ss_dssp EEEEETTCTTTTTT-HHHHHH-HHT----CCEEEETTCCSSHH-HHCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCcCCHh-HHHHHh-CCC----CCEEEeCCCCCCcC-hhhHHHHHHHHHHHHHhh
Confidence 99999999999998 888888 763 47999999999643 356678889999999763
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-18 Score=185.14 Aligned_cols=213 Identities=14% Similarity=0.044 Sum_probs=137.2
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC------------Cccc----HHHHHHHHCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR------------GILN----LSIQYWTSRG 524 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~------------~~~~----~~~~~l~~~G 524 (732)
.+.+.+.+. +|..++++++.|.+ ..++.|+||++||.+..... ..+. ..++.|+++|
T Consensus 87 ~e~v~~~~~-~g~~l~~~l~~P~~------~~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G 159 (391)
T 3g8y_A 87 LEKWEFYPF-PKSVSTFLVLKPEH------LKGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEG 159 (391)
T ss_dssp EEEEEECCS-TTCCEEEEEEEETT------CCSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTT
T ss_pred EEEEEEEcC-CCCEEEEEEEeCCC------CCCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCC
Confidence 477889887 89999999999975 13568999999997543210 0112 4678899999
Q ss_pred CEEEEEcCCCCCCCChhhHH---------hh-------ccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHH
Q 004735 525 WAFVDVNYGGSTGYGREFRE---------RL-------LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTT 588 (732)
Q Consensus 525 ~~v~~~d~rG~~g~g~~~~~---------~~-------~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a 588 (732)
|+|+++|+||.+..+..... .. ...+....+.|+.+++++|.+++.+|++||+|+|||+||+++
T Consensus 160 ~~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~a 239 (391)
T 3g8y_A 160 YVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPM 239 (391)
T ss_dssp CEEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHH
T ss_pred CEEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHH
Confidence 99999999987665432100 00 001111224799999999999998999999999999999999
Q ss_pred HHHHhCCCcceEEEeecCcCCHHHHHhhcch---hh----hhhhhhhcCChhhhhhcCccccCCCC-CCCEEEEEeCCCC
Q 004735 589 LAALAFRDTFKAGASLYGVADLSMLRAETHK---FE----SRYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDK 660 (732)
Q Consensus 589 ~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~ 660 (732)
+.++..+++++++|+.+++..+......... .. ......+. +..+...+....+..+ ..|+|++||++|.
T Consensus 240 l~~a~~~~~i~a~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--p~~~~~~d~~~~~~~~ap~P~LiihG~~D~ 317 (391)
T 3g8y_A 240 MVLGVLDKDIYAFVYNDFLCQTQERAVVMTKPDKENRRPFPNSIRHLI--PGYWRYFNFPDVVASLAPRPIIFTEGGLDR 317 (391)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGCC--TTGGGTCCHHHHHHTTTTSCEEECSCBCHH
T ss_pred HHHHHcCCceeEEEEccCCCCcccchhhcccccccccccccccHHHhC--ccHHhhCCHHHHHHhhcCCCEEEEcCCccH
Confidence 9998877789999999988877543211100 00 00000000 1111112222222222 3699999999998
Q ss_pred ccChHHHHHHHHHHHhCCC--CEEEEEeC
Q 004735 661 VVPPDQARKIYKALKENGL--PVALVEYE 687 (732)
Q Consensus 661 ~v~~~~~~~~~~~l~~~g~--~~~~~~~~ 687 (732)
++ +.. .+.++..+. ++++..++
T Consensus 318 ~v--~~~---~~~~~~~g~~~~~~~~~~~ 341 (391)
T 3g8y_A 318 DF--RLV---QSAYAASGKPENAEFHHYP 341 (391)
T ss_dssp HH--HHH---HHHHHHTTCGGGEEECCCG
T ss_pred HH--HHH---HHHHHHcCCCceeEEEEeC
Confidence 86 333 344444444 45555554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-16 Score=183.27 Aligned_cols=259 Identities=19% Similarity=0.169 Sum_probs=171.5
Q ss_pred eEEECCEEEEEeCCCC-----eEEEEeCCCCCCCceecCCCCCCCC---------------------eEeeceeecCCCC
Q 004735 150 FRIFGDTVIFSNYKDQ-----RLYKHSIDSKDSSPLPITPDYGEPL---------------------VSYADGIFDPRFN 203 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~-----~l~~~d~~~~~~~~~~lt~~~~~~~---------------------~~~~~~~~spdG~ 203 (732)
|++++..|+|....++ .||++|+++ ++.++++....... .....++|||||+
T Consensus 44 ~SpdG~~la~~~~~d~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~ 121 (741)
T 2ecf_A 44 VAPDGSRVTFLRGKDSDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ 121 (741)
T ss_dssp ECTTSSEEEEEECCSSCTTEEEEEEEETTT--CCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred EecCCCEEEEEeccCCCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence 3334557888876455 899999998 77776664311100 2356789999999
Q ss_pred EEEEEEeccCCCCCCceeEEEEEEcCCC---CccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEe
Q 004735 204 RYVTVREDRRQDALNSTTEIVAIALNGQ---NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 280 (732)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~ 280 (732)
+|++... ..|+++|++++ + .++++........+.|||||++|+|.+. .+|+++|+
T Consensus 122 ~l~~~~~----------~~i~~~d~~~~~~~~---~~~l~~~~~~~~~~~~SPDG~~la~~~~---------~~i~~~d~ 179 (741)
T 2ecf_A 122 RLLFPLG----------GELYLYDLKQEGKAA---VRQLTHGEGFATDAKLSPKGGFVSFIRG---------RNLWVIDL 179 (741)
T ss_dssp EEEEEET----------TEEEEEESSSCSTTS---CCBCCCSSSCEEEEEECTTSSEEEEEET---------TEEEEEET
T ss_pred EEEEEeC----------CcEEEEECCCCCcce---EEEcccCCcccccccCCCCCCEEEEEeC---------CcEEEEec
Confidence 9888865 58999999998 7 7788876667788999999999999872 25999999
Q ss_pred cCCCceeeeEEecCCCC-------Ccc-----ccCcCceeCCCCc-EEEEEeccC-------------------------
Q 004735 281 SENGDVYKRVCVAGFDP-------TIV-----ESPTEPKWSSKGE-LFFVTDRKN------------------------- 322 (732)
Q Consensus 281 ~~~g~~~~~~~~~~~~~-------~~~-----~~~~~~~wspDg~-l~~~~~~~~------------------------- 322 (732)
+ +|+...+ ...... +|. ..+..+.|||||+ |++.+....
T Consensus 180 ~-~g~~~~~--~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 180 A-SGRQMQL--TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp T-TTEEEEC--CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred C-CCCEEEe--ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 8 6765322 222110 000 0146789999999 888765411
Q ss_pred ----CeeeEEEEeccC-CeEEEeccc---ccccCCCce-----------------------------------------e
Q 004735 323 ----GFWNLHKWIESN-NEVLAIYSL---DAEFSRPLW-----------------------------------------V 353 (732)
Q Consensus 323 ----g~~~l~~~d~~~-g~~~~l~~~---~~~~~~~~w-----------------------------------------~ 353 (732)
+...|+++|+++ ++.+.+... ...+....| .
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV 336 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence 233788888888 765554311 001111111 1
Q ss_pred ecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe--eEeCCEEEEEEeCCCC--CcEEEEE
Q 004735 354 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVE--PSSVAKV 429 (732)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~--~~~ly~~ 429 (732)
.....+.|.+ +++ +++++.++|..+||.++.+++ .+.|+.+.+.+..+ .+++++.+++.++.+. ...||.+
T Consensus 337 ~~~~~~~~sp---dg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 337 PLHNSLRFLD---DGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp CCCSCCEECT---TSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred CcCCceEECC---CCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 1112455664 555 778888888899999998877 88999888777654 3445544445555554 4569999
Q ss_pred EcCCCcceeee
Q 004735 430 TLDDHKLKAVD 440 (732)
Q Consensus 430 dl~~~~~~~lt 440 (732)
+++++..++|+
T Consensus 412 ~~~g~~~~~l~ 422 (741)
T 2ecf_A 412 PLQGGQPQRLS 422 (741)
T ss_dssp ETTCCCCEECC
T ss_pred EcCCCCeeecc
Confidence 88777676665
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=160.57 Aligned_cols=215 Identities=15% Similarity=0.106 Sum_probs=135.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+.+ ..|.||++||++.. ....|...++.|+++||.|+++|+||.+.+... ...+
T Consensus 10 ~g~~l~~~~~g~-----------~~~~vvllHG~~~~-~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~-----~~~~ 72 (254)
T 2ocg_A 10 NGVQLHYQQTGE-----------GDHAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPP-----DRDF 72 (254)
T ss_dssp TTEEEEEEEEEC-----------CSEEEEEECCTTCC-HHHHCHHHHHHSCTTTEEEEEECCTTSTTCCSS-----CCCC
T ss_pred CCEEEEEEEecC-----------CCCeEEEECCCCCC-CccchHHHHHHHhhCCCeEEEECCCCCCCCCCC-----CCCC
Confidence 687887654421 23679999997433 123466677888888999999999987654321 1111
Q ss_pred Ccc-cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH----Hhh---cchhh
Q 004735 551 GIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML----RAE---THKFE 621 (732)
Q Consensus 551 ~~~-~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~----~~~---~~~~~ 621 (732)
... -.+++.++++++... +.+++.|+|||+||.+++.++. +|++++++|+.++....... ... ...+.
T Consensus 73 ~~~~~~~~~~~~~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (254)
T 2ocg_A 73 PADFFERDAKDAVDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWS 149 (254)
T ss_dssp CTTHHHHHHHHHHHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSC
T ss_pred ChHHHHHHHHHHHHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHH
Confidence 111 123444445555443 3468999999999999999998 99999999998875321100 000 00000
Q ss_pred h---hhhhhhcCC-------------hhhhh----hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCE
Q 004735 622 S---RYIDNLVGS-------------EKDYY----EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 681 (732)
Q Consensus 622 ~---~~~~~~~~~-------------~~~~~----~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (732)
. ..+....+. ...+. .......+.++++|+|+++|++|.++|++.+..+.+.++ +.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~ 225 (254)
T 2ocg_A 150 ERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVK----GS 225 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHST----TC
T ss_pred HHhHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCCHHHHHHHHHhCC----CC
Confidence 0 000000000 00000 011233467889999999999999999998888877664 45
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 682 ALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 682 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
++++++++||... .+..+.+.+.+.+||
T Consensus 226 ~~~~~~~~gH~~~-~e~p~~~~~~i~~fl 253 (254)
T 2ocg_A 226 RLHLMPEGKHNLH-LRFADEFNKLAEDFL 253 (254)
T ss_dssp EEEEETTCCTTHH-HHTHHHHHHHHHHHH
T ss_pred EEEEcCCCCCchh-hhCHHHHHHHHHHHh
Confidence 8999999999753 355677777888876
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-17 Score=165.47 Aligned_cols=199 Identities=17% Similarity=0.199 Sum_probs=126.9
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+.. ...|...++.|+++||.|+++|+||.+..... .. ....++..+.+..+++.. +.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~-----~~---~~~~~~~a~dl~~~l~~l--~~~~ 91 (277)
T 1brt_A 24 QPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGFGQSSQP-----TT---GYDYDTFAADLNTVLETL--DLQD 91 (277)
T ss_dssp SEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-----SS---CCSHHHHHHHHHHHHHHH--TCCS
T ss_pred CeEEEECCCCCc--HHHHHHHHHHHhhCCCEEEEeCCCCCCCCCCC-----CC---CccHHHHHHHHHHHHHHh--CCCc
Confidence 349999998543 45677788899999999999999987654321 11 122333333333333321 2468
Q ss_pred EEEEEcChHHHHHHHHHh-CCC-cceEEEeecCcCCH--------------HHH---Hhh----cchhhhhhhhhhcC--
Q 004735 576 LCITGGSAGGYTTLAALA-FRD-TFKAGASLYGVADL--------------SML---RAE----THKFESRYIDNLVG-- 630 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~-~~~a~v~~~~~~d~--------------~~~---~~~----~~~~~~~~~~~~~~-- 630 (732)
+.|+|||+||.+++.++. +|+ +++++|+.++.... ..+ ... ...+...+....+.
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (277)
T 1brt_A 92 AVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLD 171 (277)
T ss_dssp EEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHH
T ss_pred eEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 999999999999999988 998 99999999864211 000 000 00000000000000
Q ss_pred -------Chh---------------hh----h--hcCccccCCCCCCCEEEEEeCCCCccChHHH-HHHHHHHHhCCCCE
Q 004735 631 -------SEK---------------DY----Y--EKSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKIYKALKENGLPV 681 (732)
Q Consensus 631 -------~~~---------------~~----~--~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~g~~~ 681 (732)
.++ .+ . ..+....+.++++|+|+++|++|.++|++.+ ..+.+.+. +.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~ 247 (277)
T 1brt_A 172 ENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALP----SA 247 (277)
T ss_dssp HHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHHCT----TS
T ss_pred ccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCCCeEEEecCCCccCChHHHHHHHHHHCC----CC
Confidence 000 00 0 1122234567899999999999999999877 77766654 45
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 682 ALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 682 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++++++++||... .+..+++.+.+.+|++
T Consensus 248 ~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 248 EYVEVEGAPHGLL-WTHAEEVNTALLAFLA 276 (277)
T ss_dssp EEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred cEEEeCCCCcchh-hhCHHHHHHHHHHHHh
Confidence 8999999999753 3566778888888875
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=167.88 Aligned_cols=218 Identities=18% Similarity=0.300 Sum_probs=134.2
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 545 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~ 545 (732)
+... +|.++++..+.|.. .|.||++||.+.. ...|...+..|+++||.|+++|+||.+.+...
T Consensus 4 ~~~~-~g~~l~y~~~g~~~----------~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~D~~G~G~S~~~---- 66 (276)
T 1zoi_A 4 VTTK-DGVQIFYKDWGPRD----------APVIHFHHGWPLS--ADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQV---- 66 (276)
T ss_dssp EECT-TSCEEEEEEESCTT----------SCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred EECC-CCcEEEEEecCCCC----------CCeEEEECCCCcc--hhHHHHHHHHHHhCCCEEEEecCCCCCCCCCC----
Confidence 4444 78888876664422 3679999998443 45677788889999999999999987654321
Q ss_pred hccCCCc-ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCCH------------
Q 004735 546 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADL------------ 610 (732)
Q Consensus 546 ~~~~~~~-~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d~------------ 610 (732)
...+.. ...+|+.+.++.+ +.+++.|+||||||.+++.+++ + |++++++|+.++....
T Consensus 67 -~~~~~~~~~~~d~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 139 (276)
T 1zoi_A 67 -WDGHDMDHYADDVAAVVAHL------GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLP 139 (276)
T ss_dssp -SSCCSHHHHHHHHHHHHHHH------TCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCCSSCTTSBC
T ss_pred -CCCCCHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCcccccccccccccc
Confidence 011110 1134444444444 2458999999999999988665 6 9999999998864210
Q ss_pred -HHH---Hhh----cchhhhhhhh-hhcC-----------------------Chhh-------hhhcCccccCCCCCCCE
Q 004735 611 -SML---RAE----THKFESRYID-NLVG-----------------------SEKD-------YYEKSPINFVDKFSCPI 651 (732)
Q Consensus 611 -~~~---~~~----~~~~~~~~~~-~~~~-----------------------~~~~-------~~~~sp~~~~~~i~~P~ 651 (732)
..+ ... ...+...+.. ...+ .... +...+....+.++++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 219 (276)
T 1zoi_A 140 KSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPV 219 (276)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhhccccCCCE
Confidence 000 000 0000000000 0000 0000 00111222356789999
Q ss_pred EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 652 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
|+++|++|.++|+....+.+..+. .+.++++++++||... .++.+++.+.+.+|++
T Consensus 220 l~i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 220 LVMHGDDDQIVPYENSGVLSAKLL---PNGALKTYKGYPHGMP-TTHADVINADLLAFIR 275 (276)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHHS---TTEEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred EEEEcCCCcccChHHHHHHHHhhC---CCceEEEcCCCCCchh-hhCHHHHHHHHHHHhc
Confidence 999999999999874433333322 2679999999999753 3567788888888874
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=163.42 Aligned_cols=205 Identities=10% Similarity=0.118 Sum_probs=137.0
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|.||++||.+.. ...|......|+ .+|.|+++|+||.+...... . ....+++..+.+..+++... .
T Consensus 14 ~~~~vvllHG~~~~--~~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~----~---~~~~~~~~a~dl~~~l~~l~--~ 81 (268)
T 3v48_A 14 DAPVVVLISGLGGS--GSYWLPQLAVLE-QEYQVVCYDQRGTGNNPDTL----A---EDYSIAQMAAELHQALVAAG--I 81 (268)
T ss_dssp TCCEEEEECCTTCC--GGGGHHHHHHHH-TTSEEEECCCTTBTTBCCCC----C---TTCCHHHHHHHHHHHHHHTT--C
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHHHh-hcCeEEEECCCCCCCCCCCc----c---ccCCHHHHHHHHHHHHHHcC--C
Confidence 45889999998543 356667777775 47999999999765432210 0 11346666666666666533 4
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh-------------hcchhh---------hhhhhh---
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA-------------ETHKFE---------SRYIDN--- 627 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~-------------~~~~~~---------~~~~~~--- 627 (732)
+++.++||||||.+++.++. +|++++++|++++......... ....+. ..++..
T Consensus 82 ~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
T 3v48_A 82 EHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAP 161 (268)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTTHH
T ss_pred CCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhcccc
Confidence 68999999999999999988 9999999999987542111000 000000 000000
Q ss_pred -h----------cCChh-------hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004735 628 -L----------VGSEK-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689 (732)
Q Consensus 628 -~----------~~~~~-------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (732)
. ..... .+...+....+.++++|+|+++|++|.++|+..++++.+.+. ..++++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~l~~~~p----~~~~~~~~~~ 237 (268)
T 3v48_A 162 RLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALP----DSQKMVMPYG 237 (268)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSCTHHHHHHHHHCS----SEEEEEESSC
T ss_pred cchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccCHHHHHHHHHhCC----cCeEEEeCCC
Confidence 0 00000 111122234467889999999999999999998888887764 5689999999
Q ss_pred CccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 690 QHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 690 gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
||.. ..+..+.+.+.+.+|+.+.+.
T Consensus 238 GH~~-~~e~p~~~~~~i~~fl~~~~~ 262 (268)
T 3v48_A 238 GHAC-NVTDPETFNALLLNGLASLLH 262 (268)
T ss_dssp CTTH-HHHCHHHHHHHHHHHHHHHHH
T ss_pred Ccch-hhcCHHHHHHHHHHHHHHhcc
Confidence 9954 447778899999999987653
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=168.58 Aligned_cols=218 Identities=12% Similarity=0.100 Sum_probs=142.3
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+...+.. +|..+++..+.+ .|+||++||++.. ...|...++.|++ ||.|+++|+||.+.....
T Consensus 49 ~~~~~~~--~~~~~~~~~~g~------------~p~vv~lhG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G~G~S~~~ 111 (314)
T 3kxp_A 49 ISRRVDI--GRITLNVREKGS------------GPLMLFFHGITSN--SAVFEPLMIRLSD-RFTTIAVDQRGHGLSDKP 111 (314)
T ss_dssp EEEEEEC--SSCEEEEEEECC------------SSEEEEECCTTCC--GGGGHHHHHTTTT-TSEEEEECCTTSTTSCCC
T ss_pred ceeeEEE--CCEEEEEEecCC------------CCEEEEECCCCCC--HHHHHHHHHHHHc-CCeEEEEeCCCcCCCCCC
Confidence 3334444 677787655422 4799999998544 3456667777766 699999999986654311
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc-h
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH-K 619 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~-~ 619 (732)
......++..+.+..+++.. +.++++++|||+||++++.++. +|++++++|++++............ .
T Consensus 112 --------~~~~~~~~~~~dl~~~l~~l--~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 181 (314)
T 3kxp_A 112 --------ETGYEANDYADDIAGLIRTL--ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEA 181 (314)
T ss_dssp --------SSCCSHHHHHHHHHHHHHHH--TSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHH
T ss_pred --------CCCCCHHHHHHHHHHHHHHh--CCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHH
Confidence 12234566666666555542 3469999999999999999998 9999999999987653221110000 0
Q ss_pred -------------hhhhhhhhhcC--Chh---hhh---------------------------hcCccccCCCCCCCEEEE
Q 004735 620 -------------FESRYIDNLVG--SEK---DYY---------------------------EKSPINFVDKFSCPIILF 654 (732)
Q Consensus 620 -------------~~~~~~~~~~~--~~~---~~~---------------------------~~sp~~~~~~i~~P~Lii 654 (732)
....++..... ... .+. ..+....+.++++|+|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii 261 (314)
T 3kxp_A 182 RVNAGSQLFEDIKAVEAYLAGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVLIV 261 (314)
T ss_dssp HTTTTCSCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEEEE
T ss_pred HhhhchhhhcCHHHHHHHHHhhcccCchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEEEE
Confidence 00000000000 000 000 003333456789999999
Q ss_pred EeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 655 QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 655 ~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+|++|.+++++...++.+.++ ++++++++++||.+ ..+....+.+.+.+||+
T Consensus 262 ~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~g~gH~~-~~e~~~~~~~~i~~fl~ 313 (314)
T 3kxp_A 262 RGESSKLVSAAALAKTSRLRP----DLPVVVVPGADHYV-NEVSPEITLKAITNFID 313 (314)
T ss_dssp EETTCSSSCHHHHHHHHHHCT----TSCEEEETTCCSCH-HHHCHHHHHHHHHHHHH
T ss_pred ecCCCccCCHHHHHHHHHhCC----CceEEEcCCCCCcc-hhhCHHHHHHHHHHHHh
Confidence 999999999999988887764 45899999999975 33556778888888886
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.6e-17 Score=166.58 Aligned_cols=223 Identities=16% Similarity=0.129 Sum_probs=141.7
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
.+...+.. ++.+++++.+.+. ..|.||++||++... ..|...+..|++ ||.|+++|+||.+|...
T Consensus 45 ~~~~~v~~--~~~~~~~~~~g~~----------~~~~vv~lHG~~~~~--~~~~~~~~~L~~-g~~vi~~D~~G~gG~s~ 109 (306)
T 2r11_A 45 CKSFYIST--RFGQTHVIASGPE----------DAPPLVLLHGALFSS--TMWYPNIADWSS-KYRTYAVDIIGDKNKSI 109 (306)
T ss_dssp CEEEEECC--TTEEEEEEEESCT----------TSCEEEEECCTTTCG--GGGTTTHHHHHH-HSEEEEECCTTSSSSCE
T ss_pred cceEEEec--CCceEEEEeeCCC----------CCCeEEEECCCCCCH--HHHHHHHHHHhc-CCEEEEecCCCCCCCCC
Confidence 34555655 5677876665332 248899999985443 345566777777 99999999998744322
Q ss_pred hhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH----h
Q 004735 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR----A 615 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~----~ 615 (732)
. . ......++..+.+..+++.. +.++++|+|||+||.+++.++. +|++++++|+++|........ .
T Consensus 110 ~--~-----~~~~~~~~~~~~l~~~l~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 180 (306)
T 2r11_A 110 P--E-----NVSGTRTDYANWLLDVFDNL--GIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYK 180 (306)
T ss_dssp E--C-----SCCCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHH
T ss_pred C--C-----CCCCCHHHHHHHHHHHHHhc--CCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHH
Confidence 1 0 01234566666666665553 3468999999999999999988 999999999999876431100 0
Q ss_pred h-cc----hhhhhhhhhhcC----C-----------------hhhhh-------hcCccccCCCCCCCEEEEEeCCCCcc
Q 004735 616 E-TH----KFESRYIDNLVG----S-----------------EKDYY-------EKSPINFVDKFSCPIILFQGLEDKVV 662 (732)
Q Consensus 616 ~-~~----~~~~~~~~~~~~----~-----------------~~~~~-------~~sp~~~~~~i~~P~Lii~G~~D~~v 662 (732)
. .. .....+...... . ...+. .......+.++++|+|+++|++|.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~ 260 (306)
T 2r11_A 181 YALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIY 260 (306)
T ss_dssp HHHTTTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEEEEETTCCSS
T ss_pred HHhHHHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEEEEeCCCccc
Confidence 0 00 000000000000 0 00000 00122235678899999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 663 PPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 663 ~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+++.+.++++.+. .++++++++++||.+. .+...++.+.+.+||+
T Consensus 261 ~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 305 (306)
T 2r11_A 261 DPHSALHRASSFV---PDIEAEVIKNAGHVLS-MEQPTYVNERVMRFFN 305 (306)
T ss_dssp CHHHHHHHHHHHS---TTCEEEEETTCCTTHH-HHSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHC---CCCEEEEeCCCCCCCc-ccCHHHHHHHHHHHHh
Confidence 9988876665432 2569999999999643 3456677778888874
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-17 Score=161.11 Aligned_cols=209 Identities=13% Similarity=0.075 Sum_probs=140.0
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 545 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~ 545 (732)
+... +|.++++..+.+ .|.||++||++... ..|...++.|+ .||.|+++|+||.+.....
T Consensus 7 ~~~~-~g~~l~~~~~g~------------~~~vv~lHG~~~~~--~~~~~~~~~l~-~~~~vi~~d~~G~G~S~~~---- 66 (262)
T 3r0v_A 7 VPSS-DGTPIAFERSGS------------GPPVVLVGGALSTR--AGGAPLAERLA-PHFTVICYDRRGRGDSGDT---- 66 (262)
T ss_dssp EECT-TSCEEEEEEEEC------------SSEEEEECCTTCCG--GGGHHHHHHHT-TTSEEEEECCTTSTTCCCC----
T ss_pred EEcC-CCcEEEEEEcCC------------CCcEEEECCCCcCh--HHHHHHHHHHh-cCcEEEEEecCCCcCCCCC----
Confidence 4454 788888665421 36899999985443 45667777777 8999999999987654322
Q ss_pred hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH--------Hhh
Q 004735 546 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML--------RAE 616 (732)
Q Consensus 546 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~--------~~~ 616 (732)
.....++..+.+..+++.. + +++.++|||+||.+++.++. +| +++++++++|....... ...
T Consensus 67 -----~~~~~~~~~~~~~~~~~~l--~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 137 (262)
T 3r0v_A 67 -----PPYAVEREIEDLAAIIDAA--G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVPPDYQTR 137 (262)
T ss_dssp -----SSCCHHHHHHHHHHHHHHT--T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCCTTHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHhc--C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhhhHHHHH
Confidence 0133556666555555553 3 68999999999999999998 88 99999999986542110 000
Q ss_pred ---------cchhhhhhhhhhcCC-h---hhh------------------------hhcCccccCCCCCCCEEEEEeCCC
Q 004735 617 ---------THKFESRYIDNLVGS-E---KDY------------------------YEKSPINFVDKFSCPIILFQGLED 659 (732)
Q Consensus 617 ---------~~~~~~~~~~~~~~~-~---~~~------------------------~~~sp~~~~~~i~~P~Lii~G~~D 659 (732)
.......+.....+. + +.+ ....+...+.++++|+|+++|++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 217 (262)
T 3r0v_A 138 LDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGAS 217 (262)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTSCCCHHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSCEEEEECTTC
T ss_pred HHHHhhccchhhHHHHHhhcccCCCHHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCCEEEEeecCC
Confidence 000001111110100 0 000 011234456788999999999999
Q ss_pred CccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 660 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
.+++++...++.+.+. +.++++++++|| + +..+++.+.+.+||+
T Consensus 218 ~~~~~~~~~~~~~~~~----~~~~~~~~~~gH-~---~~p~~~~~~i~~fl~ 261 (262)
T 3r0v_A 218 PAWIRHTAQELADTIP----NARYVTLENQTH-T---VAPDAIAPVLVEFFT 261 (262)
T ss_dssp CHHHHHHHHHHHHHST----TEEEEECCCSSS-S---CCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhCC----CCeEEEecCCCc-c---cCHHHHHHHHHHHHh
Confidence 9999988888887764 569999999999 3 356778888888875
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=162.38 Aligned_cols=217 Identities=18% Similarity=0.256 Sum_probs=134.2
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 545 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~ 545 (732)
+.+. +|.++++..+. ..|.||++||.+.. ...|...+..|+++||.|+++|+||.+.....
T Consensus 3 ~~~~-~g~~l~y~~~g------------~~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~---- 63 (273)
T 1a8s_A 3 FTTR-DGTQIYYKDWG------------SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRGHGRSSQP---- 63 (273)
T ss_dssp EECT-TSCEEEEEEES------------CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred EecC-CCcEEEEEEcC------------CCCEEEEECCCCCc--HHHHhhHHhhHhhCCcEEEEECCCCCCCCCCC----
Confidence 4455 78888755442 12679999998543 45677788889999999999999987654321
Q ss_pred hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCCH-------------
Q 004735 546 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADL------------- 610 (732)
Q Consensus 546 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d~------------- 610 (732)
. ....+++..+.+..+++.. +.+++.|+||||||.+++.++. + |++++++|+.++....
T Consensus 64 -~---~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 137 (273)
T 1a8s_A 64 -W---SGNDMDTYADDLAQLIEHL--DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPM 137 (273)
T ss_dssp -S---SCCSHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCH
T ss_pred -C---CCCCHHHHHHHHHHHHHHh--CCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCcH
Confidence 0 1123444444444444432 3468999999999999988665 5 9999999998863210
Q ss_pred HHH---Hh----hcchhhhhhhh-hhcC-----------------------Chh-------hhhhcCccccCCCCCCCEE
Q 004735 611 SML---RA----ETHKFESRYID-NLVG-----------------------SEK-------DYYEKSPINFVDKFSCPII 652 (732)
Q Consensus 611 ~~~---~~----~~~~~~~~~~~-~~~~-----------------------~~~-------~~~~~sp~~~~~~i~~P~L 652 (732)
..+ .. ....+...+.. ...+ ... .+...+....+.++++|+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 217 (273)
T 1a8s_A 138 EVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTL 217 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCEE
T ss_pred HHHHHHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhcCCCCEE
Confidence 000 00 00000000000 0000 000 0111122234568899999
Q ss_pred EEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+++|++|.++|++...+.+..+. .+.++++++++||.+. .+..+++.+.+.+||+
T Consensus 218 ii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 218 VVHGDADQVVPIEASGIASAALV---KGSTLKIYSGAPHGLT-DTHKDQLNADLLAFIK 272 (273)
T ss_dssp EEEETTCSSSCSTTTHHHHHHHS---TTCEEEEETTCCSCHH-HHTHHHHHHHHHHHHH
T ss_pred EEECCCCccCChHHHHHHHHHhC---CCcEEEEeCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 99999999999874444333332 2568999999999753 3567788888888885
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=162.87 Aligned_cols=215 Identities=19% Similarity=0.253 Sum_probs=139.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-cc-cHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhcc
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL-NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 548 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~~-~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~ 548 (732)
+|.++ .+|.|.. .+.|+||++|||++..... .+ ......+++.||.|+.+|||+.+.+ .+.
T Consensus 13 ~~~~~--~~y~p~~--------~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~--~~p----- 75 (274)
T 2qru_A 13 NGATV--TIYPTTT--------EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT--KID----- 75 (274)
T ss_dssp TSCEE--EEECCSS--------SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS--CHH-----
T ss_pred CCeeE--EEEcCCC--------CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC--CCc-----
Confidence 56555 4566742 3469999999997644333 23 3456677888999999999987643 222
Q ss_pred CCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CCCcceEEEeecCcCCHHHHHhh----cchh
Q 004735 549 RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLSMLRAE----THKF 620 (732)
Q Consensus 549 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~~d~~~~~~~----~~~~ 620 (732)
..++|+.++++|+.++.. +.++|+|+|+|+||++++.++. .+.+++++++.+|..+....... ....
T Consensus 76 ----~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~ 150 (274)
T 2qru_A 76 ----HILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQAI 150 (274)
T ss_dssp ----HHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSCC
T ss_pred ----HHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhccccc
Confidence 237999999999987642 2689999999999999998876 57788999999888772211000 0000
Q ss_pred hhhhhhhh----------c-------------CChhhhhh--------cCcc--ccCCCCCCCEEEEEeCCCCccChHHH
Q 004735 621 ESRYIDNL----------V-------------GSEKDYYE--------KSPI--NFVDKFSCPIILFQGLEDKVVPPDQA 667 (732)
Q Consensus 621 ~~~~~~~~----------~-------------~~~~~~~~--------~sp~--~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (732)
........ + .....+.. ..++ ..+.++ +|+||++|+.|..++..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~~D~~~~~~~~ 229 (274)
T 2qru_A 151 SAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASSSDEEVPFRYS 229 (274)
T ss_dssp CSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEETTCSSSCTHHH
T ss_pred cHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEecCCCCcCHHHH
Confidence 00000000 0 00000000 0001 112445 7999999999999998887
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCc---ccHHHHHHHHHHHHHH
Q 004735 668 RKIYKALKENGLPVALVEYEGEQHGFRKA---ENIKFTLEQQMVFFAR 712 (732)
Q Consensus 668 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~---~~~~~~~~~~~~fl~~ 712 (732)
+++.+++. +++++++++++|+|... +...++++.+.+||++
T Consensus 230 ~~l~~~~~----~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 230 KKIGRTIP----ESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp HHHHHHST----TCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCC----CcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 77776654 56999999999997432 2334667788888864
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=162.61 Aligned_cols=190 Identities=12% Similarity=0.076 Sum_probs=134.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH--HHHHHHHCCCEEEEEcCCCCCCCChhhHHhhcc
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL--SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 548 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~--~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~ 548 (732)
+|.++++..+.|.+ ++..|+||++||++... ..+.. ..+.|+++||.|+++|+||.+..... ....
T Consensus 15 ~g~~l~~~~~~p~~-------~~~~~~vv~~hG~~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~---~~~~ 82 (210)
T 1imj_A 15 QGQALFFREALPGS-------GQARFSVLLLHGIRFSS--ETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEA---AAPA 82 (210)
T ss_dssp TTEEECEEEEECSS-------SCCSCEEEECCCTTCCH--HHHHHHTHHHHHHHTTCEEEEECCTTSGGGTTS---CCSS
T ss_pred CCeEEEEEEeCCCC-------CCCCceEEEECCCCCcc--ceeecchhHHHHHHCCCeEEEecCCCCCCCCCC---CCcc
Confidence 78999999998865 44679999999985433 34444 47889999999999999975432211 1111
Q ss_pred CCCcc-cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhh
Q 004735 549 RWGIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYID 626 (732)
Q Consensus 549 ~~~~~-~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 626 (732)
.+... ..+++.+.++.+ +.++++++|||+||.+++.++. +|++++++++.+|......
T Consensus 83 ~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~-------------- 142 (210)
T 1imj_A 83 PIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI-------------- 142 (210)
T ss_dssp CTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS--------------
T ss_pred hhhhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccccc--------------
Confidence 11110 125555555554 3468999999999999999888 9999999999998753210
Q ss_pred hhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHH
Q 004735 627 NLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQ 706 (732)
Q Consensus 627 ~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 706 (732)
....+.++++|+++++|++|. ++.+..+++ +.+ .+.+++++++++|.+. .+....+.+.+
T Consensus 143 -------------~~~~~~~~~~p~l~i~g~~D~-~~~~~~~~~-~~~----~~~~~~~~~~~~H~~~-~~~~~~~~~~i 202 (210)
T 1imj_A 143 -------------NAANYASVKTPALIVYGDQDP-MGQTSFEHL-KQL----PNHRVLIMKGAGHPCY-LDKPEEWHTGL 202 (210)
T ss_dssp -------------CHHHHHTCCSCEEEEEETTCH-HHHHHHHHH-TTS----SSEEEEEETTCCTTHH-HHCHHHHHHHH
T ss_pred -------------cchhhhhCCCCEEEEEcCccc-CCHHHHHHH-hhC----CCCCEEEecCCCcchh-hcCHHHHHHHH
Confidence 111234568999999999999 888776665 433 3679999999999743 23456677778
Q ss_pred HHHHHH
Q 004735 707 MVFFAR 712 (732)
Q Consensus 707 ~~fl~~ 712 (732)
.+||++
T Consensus 203 ~~fl~~ 208 (210)
T 1imj_A 203 LDFLQG 208 (210)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=161.43 Aligned_cols=233 Identities=10% Similarity=0.035 Sum_probs=167.2
Q ss_pred CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC-CCccccEEccc
Q 004735 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQEPKVLVS 241 (732)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~lt~ 241 (732)
.++.|+++|+.+ ++.+++... ......++|||||++|++..+ ..|+++|+++ ++ ...+..
T Consensus 20 ~~~~i~~~d~~~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~----------~~i~~~d~~~~~~---~~~~~~ 80 (297)
T 2ojh_A 20 MRSSIEIFNIRT--RKMRVVWQT----PELFEAPNWSPDGKYLLLNSE----------GLLYRLSLAGDPS---PEKVDT 80 (297)
T ss_dssp CCEEEEEEETTT--TEEEEEEEE----SSCCEEEEECTTSSEEEEEET----------TEEEEEESSSCCS---CEECCC
T ss_pred cceeEEEEeCCC--CceeeeccC----CcceEeeEECCCCCEEEEEcC----------CeEEEEeCCCCCC---ceEecc
Confidence 356899999987 766666544 234567889999999877642 5899999999 87 777764
Q ss_pred CC--CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEE
Q 004735 242 GS--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (732)
Q Consensus 242 ~~--~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~ 318 (732)
+. .....++|||||++|++...+.. ....||++++. +++. ..+... .....+.|+|||+ +++..
T Consensus 81 ~~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~l~~~~~~-~~~~---~~~~~~-----~~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 81 GFATICNNDHGISPDGALYAISDKVEF----GKSAIYLLPST-GGTP---RLMTKN-----LPSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp TTCCCBCSCCEECTTSSEEEEEECTTT----SSCEEEEEETT-CCCC---EECCSS-----SSEEEEEECTTSSEEEEEE
T ss_pred ccccccccceEECCCCCEEEEEEeCCC----CcceEEEEECC-CCce---EEeecC-----CCccceEECCCCCEEEEEE
Confidence 43 45667999999999999874432 25679999987 5553 333333 2245679999999 77777
Q ss_pred eccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
.. .+...||.++..+++.+.+.........+.|++ +++.|++.+..++..+||.++..++..+.++.
T Consensus 148 ~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~------------dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 148 IR-DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP------------DGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp EE-TTEEEEEEEETTTCCEEECCCSSSCEEEEEECT------------TSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred CC-CCceEEEEEECCCCcceEcccCCCccccceECC------------CCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 66 677899999998888887775544444455554 78888888877888999999988888888887
Q ss_pred CCCceEEe-eEeC-CEEEEEEeCCC-------CCcEEEEEEcCCCcceeee
Q 004735 399 PFTDIDNI-TLGN-DCLFVEGASGV-------EPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 399 ~~~~v~~~-~~~~-~~~~~~~~~~~-------~~~~ly~~dl~~~~~~~lt 440 (732)
....+..+ ..++ +.+++...... ....|+++|+++++.+.+.
T Consensus 215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 66555555 3344 44444444322 2256999999998865554
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-17 Score=161.43 Aligned_cols=204 Identities=15% Similarity=0.093 Sum_probs=134.9
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+.+ ...|...+..|+++||.|+++|+||.+....... .....++..+.+..++++... .++
T Consensus 5 ~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~l~~~l~~l~~-~~~ 74 (258)
T 3dqz_A 5 HHFVLVHNAYHG--AWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQ-------AVETVDEYSKPLIETLKSLPE-NEE 74 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSSCGG-------GCCSHHHHHHHHHHHHHTSCT-TCC
T ss_pred CcEEEECCCCCc--cccHHHHHHHHHhCCCEEEEecCCCCcCCCCCCC-------ccccHHHhHHHHHHHHHHhcc-cCc
Confidence 899999998543 3456778899999999999999998765433211 113355555555555555322 378
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH-----HHhhc----chh--------------------hhhhh
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-----LRAET----HKF--------------------ESRYI 625 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~-----~~~~~----~~~--------------------~~~~~ 625 (732)
+.|+|||+||.+++.++. +|++++++|++++...... ..... ..+ .....
T Consensus 75 ~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3dqz_A 75 VILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKFM 154 (258)
T ss_dssp EEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHHH
Confidence 999999999999999998 9999999999988542110 00000 000 00000
Q ss_pred hhhc-C--Chhh-----------------hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 626 DNLV-G--SEKD-----------------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 626 ~~~~-~--~~~~-----------------~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
...+ . ..+. +............++|+|+++|++|.++|++....+.+.+. +.++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 230 (258)
T 3dqz_A 155 KARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFN----VSKVYE 230 (258)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHSC----CSCEEE
T ss_pred HHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeCHHHHHHHHHhCC----cccEEE
Confidence 0000 0 0000 00012222222336899999999999999998888887764 348999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
++++||... .+..+++.+.+.+|+++++
T Consensus 231 ~~~~gH~~~-~~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 231 IDGGDHMVM-LSKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp ETTCCSCHH-HHSHHHHHHHHHHHHHHTC
T ss_pred cCCCCCchh-hcChHHHHHHHHHHHHHhC
Confidence 999999743 3677888899999998875
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-17 Score=159.84 Aligned_cols=203 Identities=14% Similarity=0.102 Sum_probs=132.7
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHH--CCCEEEEEcCCCCCC------CChhhHHh
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGSTG------YGREFRER 545 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~--~G~~v~~~d~rG~~g------~g~~~~~~ 545 (732)
.+.+.++.|.. +..++||++||.+.. ...+..+++.+.. .++.+++|+-+-.+. .+..|.+.
T Consensus 24 ~l~y~ii~P~~--------~~~~~VI~LHG~G~~--~~dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~~~~~~~~Wf~~ 93 (246)
T 4f21_A 24 AMNYELMEPAK--------QARFCVIWLHGLGAD--GHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMRAWYDI 93 (246)
T ss_dssp CCCEEEECCSS--------CCCEEEEEEEC--CC--CCCGGGGGGGCCSCCTTEEEEEECGGGSCTTTHHHHHHHSCTTC
T ss_pred CcCceEeCCCC--------cCCeEEEEEcCCCCC--HHHHHHHHHHhhhcCCCeEEEeCCCCccccccCCCCCccccccc
Confidence 35556778854 345799999997433 3344444444432 367888887421110 01111110
Q ss_pred hc-------cCCCcccHHHHHHHHHHHHh---cCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH
Q 004735 546 LL-------GRWGIVDVNDCCSCATFLVG---SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 614 (732)
Q Consensus 546 ~~-------~~~~~~~~~D~~~~i~~l~~---~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~ 614 (732)
.. .......+.+..+.+..+++ +..++++||+++|+|+||.+++.++. +|+.+.++++++|........
T Consensus 94 ~~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~~~~ 173 (246)
T 4f21_A 94 KSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWDNF 173 (246)
T ss_dssp CCC---CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTHHHH
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCccccc
Confidence 00 00000112233333333322 34689999999999999999999998 999999999999975432211
Q ss_pred hhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004735 615 AETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 694 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 694 (732)
.. ... ....++|++++||++|++||++.++++++.|++.|.+++++.|++.||.+.
T Consensus 174 ~~--------------------~~~----~~~~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~y~g~gH~i~ 229 (246)
T 4f21_A 174 KG--------------------KIT----SINKGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKHYVGMQHSVC 229 (246)
T ss_dssp ST--------------------TCC----GGGTTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEESSCCSSCC
T ss_pred cc--------------------ccc----ccccCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCccC
Confidence 00 000 011257999999999999999999999999999999999999999999875
Q ss_pred CcccHHHHHHHHHHHHHHHhC
Q 004735 695 KAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 695 ~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.+.++.+.+||++.|+
T Consensus 230 -----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 230 -----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp -----HHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHHhC
Confidence 3557889999999886
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-18 Score=182.35 Aligned_cols=215 Identities=16% Similarity=0.086 Sum_probs=139.6
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC------------Cccc----HHHHHHHHC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR------------GILN----LSIQYWTSR 523 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~------------~~~~----~~~~~l~~~ 523 (732)
+.+.+.+.+. +|.+++++++.|.+ ..++.|+||++||++..... ..|. ..++.|+++
T Consensus 91 ~~e~v~~~~~-~g~~l~~~l~~P~~------~~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~ 163 (398)
T 3nuz_A 91 RLEKWEFYPL-PKCVSTFLVLIPDN------INKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKE 163 (398)
T ss_dssp EEEEEEECCS-TTBCEEEEEEEESS------CCSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTT
T ss_pred EEEEEEEEcC-CCcEEEEEEEeCCC------CCCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHC
Confidence 3577889987 99999999999976 14568999999998553220 0111 477899999
Q ss_pred CCEEEEEcCCCCCCCChhhHHh----------------hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHH
Q 004735 524 GWAFVDVNYGGSTGYGREFRER----------------LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587 (732)
Q Consensus 524 G~~v~~~d~rG~~g~g~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~ 587 (732)
||+|+++|+||.+..+...... ....+....+.|+.+++++|.+++.+|++||+|+|||+||++
T Consensus 164 Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~ 243 (398)
T 3nuz_A 164 GYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEP 243 (398)
T ss_dssp TCEEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHH
T ss_pred CCEEEEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHH
Confidence 9999999999876654322100 011112224589999999999998899999999999999999
Q ss_pred HHHHHhCCCcceEEEeecCcCCHHHHHhhcch--------hhhhhhhhhcCChhhhhhcCccccCCC-CCCCEEEEEeCC
Q 004735 588 TLAALAFRDTFKAGASLYGVADLSMLRAETHK--------FESRYIDNLVGSEKDYYEKSPINFVDK-FSCPIILFQGLE 658 (732)
Q Consensus 588 a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~Lii~G~~ 658 (732)
++.+++.+++++++|+.+++..+......... +.. ....+. +..+...+....+.. ...|+||+||++
T Consensus 244 a~~~aa~~~~i~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~l~~~~d~~~~~~~~ap~PlLii~G~~ 320 (398)
T 3nuz_A 244 MMVLGTLDTSIYAFVYNDFLCQTQERAEVMTMPDKNGRRPFPN-SIRHLI--PDFWKNFNFPDIVAALAPRPIILTEGGL 320 (398)
T ss_dssp HHHHHHHCTTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSS-CGGGCC--TTHHHHCCHHHHHHHTTTSCEEECSCBC
T ss_pred HHHHHhcCCcEEEEEEecccccchhhhhhhccccccccccCCc-cHHHhc--chHhhhCCHHHHHHhhCCCcEEEeeCCc
Confidence 99888877789999998887766544211110 000 000000 011111111111111 136999999999
Q ss_pred CCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 659 DKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 659 D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
|..+ ....++++.+.. ..++++++|+
T Consensus 321 D~~v--~~~~~~y~~~g~-~~~~~~~~~p 346 (398)
T 3nuz_A 321 DRDL--DLVRKAYAIVGT-PDNVKIYHYK 346 (398)
T ss_dssp HHHH--HHHHHHHHHHTC-TTSEEECCCG
T ss_pred hHHH--HHHHHHHHHcCC-CcceEEEEeC
Confidence 9554 455555555432 2356777766
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=163.45 Aligned_cols=212 Identities=13% Similarity=0.057 Sum_probs=136.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++.... ..|.||++||++... ..|......|++ ||.|+++|+||.+....... .
T Consensus 11 ~~~~~~y~~~g------------~~~~vv~~HG~~~~~--~~~~~~~~~L~~-~~~vi~~d~~G~G~s~~~~~------~ 69 (278)
T 3oos_A 11 PRGKFEYFLKG------------EGPPLCVTHLYSEYN--DNGNTFANPFTD-HYSVYLVNLKGCGNSDSAKN------D 69 (278)
T ss_dssp TTEEEEEEEEC------------SSSEEEECCSSEECC--TTCCTTTGGGGG-TSEEEEECCTTSTTSCCCSS------G
T ss_pred CCceEEEEecC------------CCCeEEEEcCCCcch--HHHHHHHHHhhc-CceEEEEcCCCCCCCCCCCC------c
Confidence 57777754431 237899999985433 335555666766 99999999998765432210 0
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH----------------
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML---------------- 613 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~---------------- 613 (732)
.....+++.+.+..+++.. +.++++++|||+||.+++.++. +|++++++|+.+|.......
T Consensus 70 ~~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (278)
T 3oos_A 70 SEYSMTETIKDLEAIREAL--YINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNR 147 (278)
T ss_dssp GGGSHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHH
T ss_pred ccCcHHHHHHHHHHHHHHh--CCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHH
Confidence 1123566666666666553 3468999999999999999998 99999999999998761100
Q ss_pred ----Hhhc--c--------hhhhh----------hhhhhcCCh----------h-----hhhhcCccccCCCCCCCEEEE
Q 004735 614 ----RAET--H--------KFESR----------YIDNLVGSE----------K-----DYYEKSPINFVDKFSCPIILF 654 (732)
Q Consensus 614 ----~~~~--~--------~~~~~----------~~~~~~~~~----------~-----~~~~~sp~~~~~~i~~P~Lii 654 (732)
.... . ..... .....+... . .+...+....+.++++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i 227 (278)
T 3oos_A 148 IVSIMNALNDDSTVQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIY 227 (278)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTTCCSCEEEE
T ss_pred HHHHHHhhcccccCchHHHHHHHHHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhCCCCCEEEE
Confidence 0000 0 00000 000000000 0 111223344567889999999
Q ss_pred EeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 655 QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 655 ~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
+|++|.+++++.+.++.+.+. ++++++++++||.+. .+..+++.+.+.+||
T Consensus 228 ~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 278 (278)
T 3oos_A 228 CGKHDVQCPYIFSCEIANLIP----NATLTKFEESNHNPF-VEEIDKFNQFVNDTL 278 (278)
T ss_dssp EETTCSSSCHHHHHHHHHHST----TEEEEEETTCSSCHH-HHSHHHHHHHHHHTC
T ss_pred EeccCCCCCHHHHHHHHhhCC----CcEEEEcCCcCCCcc-cccHHHHHHHHHhhC
Confidence 999999999998888888763 579999999999753 245556666666553
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=162.73 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=135.5
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
++..+.. +|.++++..+.+.+ .|.||++||++.. ...|...+..|+++||.|+++|+||.+.....
T Consensus 5 ~~~~~~~--~g~~l~~~~~g~~~----------~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~ 70 (286)
T 3qit_A 5 EEKFLEF--GGNQICLCSWGSPE----------HPVVLCIHGILEQ--GLAWQEVALPLAAQGYRVVAPDLFGHGRSSHL 70 (286)
T ss_dssp EEEEEEE--TTEEEEEEEESCTT----------SCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC
T ss_pred hhheeec--CCceEEEeecCCCC----------CCEEEEECCCCcc--cchHHHHHHHhhhcCeEEEEECCCCCCCCCCC
Confidence 4445554 79999988886532 4789999998544 34567788999999999999999987654322
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH------
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR------ 614 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~------ 614 (732)
.. ......++..+.+..++++. +.++++++|||+||++++.++. +|++++++|++++........
T Consensus 71 ~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 142 (286)
T 3qit_A 71 EM------VTSYSSLTFLAQIDRVIQEL--PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVN 142 (286)
T ss_dssp SS------GGGCSHHHHHHHHHHHHHHS--CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---CCHHH
T ss_pred CC------CCCcCHHHHHHHHHHHHHhc--CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccchhhhH
Confidence 10 01233566666666666653 3478999999999999999998 999999999999865422110
Q ss_pred ---hh------c--------------------chhhh----hhhhhhcC----------Chh----h---h-----hhcC
Q 004735 615 ---AE------T--------------------HKFES----RYIDNLVG----------SEK----D---Y-----YEKS 639 (732)
Q Consensus 615 ---~~------~--------------------~~~~~----~~~~~~~~----------~~~----~---~-----~~~s 639 (732)
.. . ..+.. .+...... +.. . + ...+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (286)
T 3qit_A 143 QLTTCLDYLSSTPQHPIFPDVATAASRLRQAIPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPGGRSQ 222 (286)
T ss_dssp HHHHHHHHHTCCCCCCCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTTHHHH
T ss_pred HHHHHHHHHhccccccccccHHHHHHHhhcCCcccCHHHHHHHhhccccccccceeeeechhhhccccccccccccchhH
Confidence 00 0 00000 00000000 000 0 0 1111
Q ss_pred ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 640 PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 640 p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
....+.++++|+|+++|++|.+++++...++.+.+. +++++++++ ||.+
T Consensus 223 ~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~g-gH~~ 271 (286)
T 3qit_A 223 YLEMLKSIQVPTTLVYGDSSKLNRPEDLQQQKMTMT----QAKRVFLSG-GHNL 271 (286)
T ss_dssp HHHHHHHCCSCEEEEEETTCCSSCHHHHHHHHHHST----TSEEEEESS-SSCH
T ss_pred HHHHHhccCCCeEEEEeCCCcccCHHHHHHHHHHCC----CCeEEEeeC-CchH
Confidence 222346789999999999999999988888777664 458999999 9964
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=160.44 Aligned_cols=217 Identities=13% Similarity=0.080 Sum_probs=139.5
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~ 544 (732)
.+.+. +|.++++..+-+. ..|+||++||.+.. ...|......|++ +|.|+++|.||.+.+...
T Consensus 8 ~~~~~-~g~~l~y~~~G~~----------~~p~lvl~hG~~~~--~~~w~~~~~~L~~-~~~vi~~D~rG~G~S~~~--- 70 (266)
T 3om8_A 8 FLATS-DGASLAYRLDGAA----------EKPLLALSNSIGTT--LHMWDAQLPALTR-HFRVLRYDARGHGASSVP--- 70 (266)
T ss_dssp EEECT-TSCEEEEEEESCT----------TSCEEEEECCTTCC--GGGGGGGHHHHHT-TCEEEEECCTTSTTSCCC---
T ss_pred EEecc-CCcEEEEEecCCC----------CCCEEEEeCCCccC--HHHHHHHHHHhhc-CcEEEEEcCCCCCCCCCC---
Confidence 34555 8999987766432 24889999997443 3456666777765 799999999976654321
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH---HHHHh-----
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---SMLRA----- 615 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~---~~~~~----- 615 (732)
. +...+++..+.+..+++.. ..+++.++||||||.+++.++. +|++++++|+.++.... ..+..
T Consensus 71 --~---~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~ 143 (266)
T 3om8_A 71 --P---GPYTLARLGEDVLELLDAL--EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAV 143 (266)
T ss_dssp --C---SCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHH
T ss_pred --C---CCCCHHHHHHHHHHHHHHh--CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHH
Confidence 1 1123455555554444442 3468999999999999999988 99999999998764211 00000
Q ss_pred ----hcchhhhhhhhhhcC---------------------Chhh-------hhhcCccccCCCCCCCEEEEEeCCCCccC
Q 004735 616 ----ETHKFESRYIDNLVG---------------------SEKD-------YYEKSPINFVDKFSCPIILFQGLEDKVVP 663 (732)
Q Consensus 616 ----~~~~~~~~~~~~~~~---------------------~~~~-------~~~~sp~~~~~~i~~P~Lii~G~~D~~v~ 663 (732)
.........+...+. .... +...+....+.++++|+|+++|++|.++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~G~~D~~~~ 223 (266)
T 3om8_A 144 LQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTA 223 (266)
T ss_dssp HHCSSSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEEETTCSSSC
T ss_pred HccccHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEEeCCCCCCC
Confidence 000000000000000 0000 11112223467889999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 664 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 664 ~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+..++.+.+.+. ..++++++ +||.. ..+..+++.+.+.+||.
T Consensus 224 ~~~~~~l~~~ip----~a~~~~i~-~gH~~-~~e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 224 ASHGELIAASIA----GARLVTLP-AVHLS-NVEFPQAFEGAVLSFLG 265 (266)
T ss_dssp HHHHHHHHHHST----TCEEEEES-CCSCH-HHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC----CCEEEEeC-CCCCc-cccCHHHHHHHHHHHhc
Confidence 999988888775 34888897 79953 45677788888888874
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=161.54 Aligned_cols=206 Identities=13% Similarity=0.107 Sum_probs=135.4
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
...|.||++||.+. ....|...+..|+++||.|+++|+||.+....... .....++..+.+..++++.. +
T Consensus 10 ~~~~~vvllHG~~~--~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~l~~l~-~ 79 (267)
T 3sty_A 10 FVKKHFVLVHAAFH--GAWCWYKIVALMRSSGHNVTALDLGASGINPKQAL-------QIPNFSDYLSPLMEFMASLP-A 79 (267)
T ss_dssp CCCCEEEEECCTTC--CGGGGHHHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHHHHHHHHHHTSC-T
T ss_pred CCCCeEEEECCCCC--CcchHHHHHHHHHhcCCeEEEeccccCCCCCCcCC-------ccCCHHHHHHHHHHHHHhcC-C
Confidence 45689999999853 34567788899999999999999998765433211 11335555555555555421 3
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-----HHHhhc----chh--------------------hh
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----MLRAET----HKF--------------------ES 622 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-----~~~~~~----~~~--------------------~~ 622 (732)
.+++.|+|||+||.+++.++. +|++++++|++++..... ...... ..+ ..
T Consensus 80 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (267)
T 3sty_A 80 NEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGP 159 (267)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECCH
T ss_pred CCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhhH
Confidence 579999999999999999998 999999999998764211 111000 000 00
Q ss_pred hhhhhhc-C--Ch------------------hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCE
Q 004735 623 RYIDNLV-G--SE------------------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 681 (732)
Q Consensus 623 ~~~~~~~-~--~~------------------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (732)
......+ . .. ..+............++|+|+++|++|.+++++...++.+.+. ++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~ 235 (267)
T 3sty_A 160 KFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNP----PD 235 (267)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHHHHHHHHHHHHSC----CS
T ss_pred HHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccCHHHHHHHHHhCC----Cc
Confidence 0000000 0 00 0011112222222235899999999999999988888877764 35
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 682 ALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 682 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
++++++++||.+. .+..+++.+.+.+|++++
T Consensus 236 ~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 236 EVKEIEGSDHVTM-MSKPQQLFTTLLSIANKY 266 (267)
T ss_dssp EEEECTTCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred eEEEeCCCCcccc-ccChHHHHHHHHHHHHhc
Confidence 9999999999743 356678888888988763
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=164.56 Aligned_cols=206 Identities=12% Similarity=0.078 Sum_probs=133.5
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|+||++||.+.. ...|...++.|++ ||.|+++|+||.+....... ......+.++..+.+..+++.. +.
T Consensus 19 ~~p~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~D~~G~G~S~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~ 89 (269)
T 4dnp_A 19 GERVLVLAHGFGTD--QSAWNRILPFFLR-DYRVVLYDLVCAGSVNPDFF----DFRRYTTLDPYVDDLLHILDAL--GI 89 (269)
T ss_dssp CSSEEEEECCTTCC--GGGGTTTGGGGTT-TCEEEEECCTTSTTSCGGGC----CTTTCSSSHHHHHHHHHHHHHT--TC
T ss_pred CCCEEEEEeCCCCc--HHHHHHHHHHHhC-CcEEEEEcCCCCCCCCCCCC----CccccCcHHHHHHHHHHHHHhc--CC
Confidence 45899999998544 3445556677777 99999999998655432100 0111123555565555555542 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH---------------HHHhh----cchhhhhhhhhhcC---
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---------------MLRAE----THKFESRYIDNLVG--- 630 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~---------------~~~~~----~~~~~~~~~~~~~~--- 630 (732)
++++|+|||+||++++.++. +|++++++++.++..... .+... ...+...+.....+
T Consensus 90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
T 4dnp_A 90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADV 169 (269)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSSC
T ss_pred CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccCCC
Confidence 68999999999999999988 999999999999854310 00000 00000000000000
Q ss_pred --------------Ch-------hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004735 631 --------------SE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689 (732)
Q Consensus 631 --------------~~-------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (732)
.. ..+...+....+.++++|+|+++|++|.+++++.+.++.+.+.. .+++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 246 (269)
T 4dnp_A 170 PAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGG---KNTVHWLNIE 246 (269)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBCHHHHHHHHHHSSS---CEEEEEEEEE
T ss_pred hhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccCHHHHHHHHHhCCC---CceEEEeCCC
Confidence 00 11112234455778899999999999999999998888887643 3799999999
Q ss_pred CccCCCcccHHHHHHHHHHHHHH
Q 004735 690 QHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 690 gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
||... .+..+++.+.+.+||++
T Consensus 247 gH~~~-~~~p~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 247 GHLPH-LSAPTLLAQELRRALSH 268 (269)
T ss_dssp SSCHH-HHCHHHHHHHHHHHHC-
T ss_pred CCCcc-ccCHHHHHHHHHHHHhh
Confidence 99653 35566777777777754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=171.22 Aligned_cols=251 Identities=11% Similarity=0.132 Sum_probs=166.8
Q ss_pred ceeEEECCEEEEEeCCC--CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 148 GAFRIFGDTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~--~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
..|++++..|+|....+ ..||++++++ ++.++++... ......+.|||||++|+|+..+ .+||+
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~--~~~~~l~~~~---~~~~~~~~~spdg~~l~~~~~~---------~~l~~ 106 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLET--QQAVQLTEGK---GDNTFGGFISTDERAFFYVKNE---------LNLMK 106 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT--TEEEECCCSS---CBCTTTCEECTTSSEEEEEETT---------TEEEE
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCC--CcEEEeecCC---CCccccceECCCCCEEEEEEcC---------CcEEE
Confidence 34666677888887553 3899999998 7888888652 1112337899999999888753 37999
Q ss_pred EEcCCCCccccEEcccCCC-ceec-------------------cccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc
Q 004735 226 IALNGQNIQEPKVLVSGSD-FYAF-------------------PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD 285 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~-~~~~-------------------p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~ 285 (732)
+++++++ .++++.... +... +.|||||++|++....... ...+|+++|++ +|+
T Consensus 107 ~d~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~---~~~~l~~~d~~-~g~ 179 (396)
T 3c5m_A 107 VDLETLE---EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN---PTCRLIKVDIE-TGE 179 (396)
T ss_dssp EETTTCC---EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC---CCEEEEEEETT-TCC
T ss_pred EECCCCC---cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC---CcceEEEEECC-CCc
Confidence 9999988 777765322 2111 5677777777665321111 35679999998 777
Q ss_pred eeeeEEecCCCCCccccCcCceeCC-CCc-EEEEEeccCC---eeeEEEEeccCCeEEEecccc--cccCCCceeecccc
Q 004735 286 VYKRVCVAGFDPTIVESPTEPKWSS-KGE-LFFVTDRKNG---FWNLHKWIESNNEVLAIYSLD--AEFSRPLWVFGINS 358 (732)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~-l~~~~~~~~g---~~~l~~~d~~~g~~~~l~~~~--~~~~~~~w~~~~~~ 358 (732)
...+. .. . ..+..+.|+| ||+ |+|.++. .. ..+|+++++++++.+.++... .....+.|++
T Consensus 180 ~~~~~--~~-~----~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp---- 247 (396)
T 3c5m_A 180 LEVIH--QD-T----AWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP---- 247 (396)
T ss_dssp EEEEE--EE-S----SCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT----
T ss_pred EEeec--cC-C----cccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceEECC----
Confidence 63332 22 2 4456889999 888 8887753 22 157999999888877776421 1233345554
Q ss_pred eeeeeecCCCCEEEEEEEECCEEE--EEEEECCCCceEEeccCCCceEEeeEe-CCEEEEEEeCC-------------CC
Q 004735 359 YEIIQSHGEKNLIACSYRQNGRSY--LGILDDFGHSLSLLDIPFTDIDNITLG-NDCLFVEGASG-------------VE 422 (732)
Q Consensus 359 ~~~~~~~~~~~~l~~~s~~~g~~~--ly~~~~~~~~~~~lt~~~~~v~~~~~~-~~~~~~~~~~~-------------~~ 422 (732)
+++.|++.+...+... ||++++++++.++++.... ......+ +++++++.++. ..
T Consensus 248 --------dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 248 --------DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIEN 318 (396)
T ss_dssp --------TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EEEEEECSSSSEEEEEECCC----------CCCC
T ss_pred --------CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CCCCccCCCCceEEEecCCcceeeccccccccCC
Confidence 8888998888776644 9999999998887764332 2222333 44455554432 23
Q ss_pred CcEEEEEEcCCCcceeee
Q 004735 423 PSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 423 ~~~ly~~dl~~~~~~~lt 440 (732)
...||++|+++++.++|+
T Consensus 319 ~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 319 DPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp CCEEEEEETTTTBCCEEE
T ss_pred CCcEEEEecccCceEEcc
Confidence 367999999998876665
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-16 Score=158.18 Aligned_cols=199 Identities=16% Similarity=0.214 Sum_probs=125.5
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||++.+. ..|...+..|+++||.|+++|+||.+...... ....+++..+.+..+++.. ..++
T Consensus 28 ~~vvllHG~~~~~--~~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~--------~~~~~~~~a~dl~~ll~~l--~~~~ 95 (281)
T 3fob_A 28 KPVVLIHGWPLSG--RSWEYQVPALVEAGYRVITYDRRGFGKSSQPW--------EGYEYDTFTSDLHQLLEQL--ELQN 95 (281)
T ss_dssp EEEEEECCTTCCG--GGGTTTHHHHHHTTEEEEEECCTTSTTSCCCS--------SCCSHHHHHHHHHHHHHHT--TCCS
T ss_pred CeEEEECCCCCcH--HHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc--------cccCHHHHHHHHHHHHHHc--CCCc
Confidence 5688999986543 44556678888999999999999766543211 1133455555555555543 3468
Q ss_pred EEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCH--------------H---HHHh----hcchhhhhhhhhhcC--
Q 004735 576 LCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADL--------------S---MLRA----ETHKFESRYIDNLVG-- 630 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~--------------~---~~~~----~~~~~~~~~~~~~~~-- 630 (732)
+.|+||||||.+++.+++ +|++++++++.++.... . .+.. ....+...+....+.
T Consensus 96 ~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (281)
T 3fob_A 96 VTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAG 175 (281)
T ss_dssp EEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCBT
T ss_pred EEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccchhHHHHHHHHhhhhHHHHHHHHHHHhcccc
Confidence 999999999987776655 68999999988754210 0 0000 000000011111100
Q ss_pred ---------------------Ch-------hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHH-HHHHHHHHhCCCCE
Q 004735 631 ---------------------SE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKIYKALKENGLPV 681 (732)
Q Consensus 631 ---------------------~~-------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~g~~~ 681 (732)
.. ..+...+....+.++++|+|+++|++|.++|++.+ ..+.+.+. +.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~p----~~ 251 (281)
T 3fob_A 176 DRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIP----NS 251 (281)
T ss_dssp TBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCGGGTHHHHHHHST----TC
T ss_pred cccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCCEEEEecCCCCCcCHHHHHHHHHHhCC----Cc
Confidence 00 00111222344688999999999999999999866 44434433 56
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 682 ALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 682 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++++++++||.. ..+..+++.+.+.+||+
T Consensus 252 ~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 252 KVALIKGGPHGL-NATHAKEFNEALLLFLK 280 (281)
T ss_dssp EEEEETTCCTTH-HHHTHHHHHHHHHHHHC
T ss_pred eEEEeCCCCCch-hhhhHHHHHHHHHHHhh
Confidence 999999999964 34667788888888874
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-17 Score=163.32 Aligned_cols=206 Identities=11% Similarity=0.106 Sum_probs=135.9
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|+||++||.+... ..|...++.|++ ||.|+++|+||.+........ .......++..+.+..+++.. +.+
T Consensus 28 ~~~vv~lHG~~~~~--~~~~~~~~~l~~-g~~v~~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~ 98 (282)
T 3qvm_A 28 EKTVLLAHGFGCDQ--NMWRFMLPELEK-QFTVIVFDYVGSGQSDLESFS----TKRYSSLEGYAKDVEEILVAL--DLV 98 (282)
T ss_dssp SCEEEEECCTTCCG--GGGTTTHHHHHT-TSEEEECCCTTSTTSCGGGCC----TTGGGSHHHHHHHHHHHHHHT--TCC
T ss_pred CCeEEEECCCCCCc--chHHHHHHHHhc-CceEEEEecCCCCCCCCCCCC----ccccccHHHHHHHHHHHHHHc--CCC
Confidence 38999999975443 455666777777 999999999987654432110 001123556666666555553 347
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH----------------Hhh----cchhhhhhhhhhcC---
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML----------------RAE----THKFESRYIDNLVG--- 630 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~----------------~~~----~~~~~~~~~~~~~~--- 630 (732)
+++|+|||+||.+++.++. +|++++++|+++|....... ... ...+...+......
T Consensus 99 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T 3qvm_A 99 NVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASH 178 (282)
T ss_dssp SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTS
T ss_pred ceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCcc
Confidence 8999999999999999988 99999999999986521100 000 00000000000000
Q ss_pred ---------------Chh-------hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC
Q 004735 631 ---------------SEK-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 688 (732)
Q Consensus 631 ---------------~~~-------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (732)
.+. .+...+....+.++++|+|+++|++|.+++++.+..+.+.+. +.+++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~ 254 (282)
T 3qvm_A 179 SSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIP----NSQLELIQA 254 (282)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCCHHHHHHHHHHSS----SEEEEEEEE
T ss_pred chhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCCHHHHHHHHHhCC----CCcEEEecC
Confidence 000 111122334567889999999999999999998888877764 569999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 689 EQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 689 ~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+||.+.. +..+++.+.+.+||++..
T Consensus 255 ~gH~~~~-~~~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 255 EGHCLHM-TDAGLITPLLIHFIQNNQ 279 (282)
T ss_dssp ESSCHHH-HCHHHHHHHHHHHHHHC-
T ss_pred CCCcccc-cCHHHHHHHHHHHHHhcC
Confidence 9997533 556788888999998754
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=163.21 Aligned_cols=200 Identities=13% Similarity=0.123 Sum_probs=131.0
Q ss_pred CCEEEEEcCCCCCccCCccc-HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
.|.||++||.+... ..|. .....+++.||.|+++|+||.+ .+.. . .....++..+.+..+++.. +.
T Consensus 43 ~~~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G---~s~~---~---~~~~~~~~~~~~~~~l~~l--~~ 109 (293)
T 3hss_A 43 GDPVVFIAGRGGAG--RTWHPHQVPAFLAAGYRCITFDNRGIG---ATEN---A---EGFTTQTMVADTAALIETL--DI 109 (293)
T ss_dssp SEEEEEECCTTCCG--GGGTTTTHHHHHHTTEEEEEECCTTSG---GGTT---C---CSCCHHHHHHHHHHHHHHH--TC
T ss_pred CCEEEEECCCCCch--hhcchhhhhhHhhcCCeEEEEccCCCC---CCCC---c---ccCCHHHHHHHHHHHHHhc--CC
Confidence 47899999985443 3344 4577788999999999999763 3211 1 1123455555444444432 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhh---------------------hhhhhhcCC
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFES---------------------RYIDNLVGS 631 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~---------------------~~~~~~~~~ 631 (732)
++++++|||+||.+++.++. +|++++++++++|................ .+......+
T Consensus 110 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (293)
T 3hss_A 110 APARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLND 189 (293)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHHTC
T ss_pred CcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhcccccccc
Confidence 68999999999999999988 99999999999987643221110000000 000000000
Q ss_pred h------------------hh-------hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe
Q 004735 632 E------------------KD-------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 686 (732)
Q Consensus 632 ~------------------~~-------~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (732)
. .. ....+....+.++++|+|+++|++|.+++++.+.++.+.++ +++++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~ 265 (293)
T 3hss_A 190 DVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADALP----NGRYLQI 265 (293)
T ss_dssp HHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHST----TEEEEEE
T ss_pred cccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHHCC----CceEEEe
Confidence 0 00 01112233467889999999999999999998888887764 5699999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 687 EGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 687 ~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+++||... .+..+++.+.+.+||++
T Consensus 266 ~~~gH~~~-~~~p~~~~~~i~~fl~~ 290 (293)
T 3hss_A 266 PDAGHLGF-FERPEAVNTAMLKFFAS 290 (293)
T ss_dssp TTCCTTHH-HHSHHHHHHHHHHHHHT
T ss_pred CCCcchHh-hhCHHHHHHHHHHHHHh
Confidence 99999743 34566777788888765
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=177.09 Aligned_cols=231 Identities=14% Similarity=0.072 Sum_probs=150.1
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCC
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g 537 (732)
....+...+... +|.++++.... ..|.||++||++.. ...|...++.|+++||.|+++|+||.+.
T Consensus 234 ~~~~~~~~~~~~-dg~~l~~~~~g------------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~D~~G~G~ 298 (555)
T 3i28_A 234 PSDMSHGYVTVK-PRVRLHFVELG------------SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKGYGE 298 (555)
T ss_dssp GGGSEEEEEEEE-TTEEEEEEEEC------------SSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTT
T ss_pred CcccceeEEEeC-CCcEEEEEEcC------------CCCEEEEEeCCCCc--hhHHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 344566777776 89999865542 24899999998544 3556778889999999999999998665
Q ss_pred CChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-----
Q 004735 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS----- 611 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~----- 611 (732)
..... . ......++..+.+..+++.. +.++++++|||+||.+++.++. +|++++++|++++.....
T Consensus 299 S~~~~---~---~~~~~~~~~~~d~~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 370 (555)
T 3i28_A 299 SSAPP---E---IEEYCMEVLCKEMVTFLDKL--GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMS 370 (555)
T ss_dssp SCCCS---C---GGGGSHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCTTSC
T ss_pred CCCCC---C---cccccHHHHHHHHHHHHHHc--CCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCCCCCCcccc
Confidence 43221 0 01122344433333333331 3468999999999999999998 999999999988753210
Q ss_pred ---HHHh------------------hcchhhhhhhhhhcCC--------------------------------h---hhh
Q 004735 612 ---MLRA------------------ETHKFESRYIDNLVGS--------------------------------E---KDY 635 (732)
Q Consensus 612 ---~~~~------------------~~~~~~~~~~~~~~~~--------------------------------~---~~~ 635 (732)
.... ........++...+.. . ..|
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (555)
T 3i28_A 371 PLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFY 450 (555)
T ss_dssp HHHHHHTCGGGHHHHHHHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTTCCHHHHHHH
T ss_pred hHHHHhcCCccchhHHhhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCccccccccccCHHHHHHH
Confidence 0000 0000000000000000 0 000
Q ss_pred ----------------------hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 636 ----------------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 636 ----------------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
...+....+.++++|+|+++|++|.++|+..++.+.+.+. ++++++++++||..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 526 (555)
T 3i28_A 451 VQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIP----HLKRGHIEDCGHWT 526 (555)
T ss_dssp HHHHTTTTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTCT----TCEEEEETTCCSCH
T ss_pred HHHHhcccchhHHHHHHhccccchhhccccccccccCEEEEEeCCCCCcCHHHHHHHHhhCC----CceEEEeCCCCCCc
Confidence 0012223456889999999999999999988877766553 56899999999964
Q ss_pred CCcccHHHHHHHHHHHHHHHhCC
Q 004735 694 RKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 694 ~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
. .+....+.+.+.+||++....
T Consensus 527 ~-~e~p~~~~~~i~~fl~~~~~~ 548 (555)
T 3i28_A 527 Q-MDKPTEVNQILIKWLDSDARN 548 (555)
T ss_dssp H-HHSHHHHHHHHHHHHHHHTCC
T ss_pred c-hhCHHHHHHHHHHHHHhccCC
Confidence 3 356678889999999998874
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=176.72 Aligned_cols=240 Identities=16% Similarity=0.082 Sum_probs=149.9
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHH----HCCC---EEEEEcCCCCCC
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT----SRGW---AFVDVNYGGSTG 537 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~----~~G~---~v~~~d~rG~~g 537 (732)
.+... +|.++++..+.|.+... .++.++.|+||++||.+... ..|...+..|+ ..|| .|+++|+||.
T Consensus 24 ~~~~~-dg~~l~~~~~g~~~~~~-~~~~~~~~~vvllHG~~~~~--~~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G~-- 97 (398)
T 2y6u_A 24 TLCAT-DRLELTYDVYTSAERQR-RSRTATRLNLVFLHGSGMSK--VVWEYYLPRLVAADAEGNYAIDKVLLIDQVNH-- 97 (398)
T ss_dssp BSSTT-CCCEEEEEEEEESCTTT-CCTTCEEEEEEEECCTTCCG--GGGGGGGGGSCCCBTTTTEEEEEEEEECCTTS--
T ss_pred cccCC-CceEEEEEEEecCCCCC-CCCCCCCCeEEEEcCCCCcH--HHHHHHHHHHHHhhhhcCcceeEEEEEcCCCC--
Confidence 35555 89999999998754100 00123458999999985443 44555667777 4489 9999999964
Q ss_pred CChhhHHhhccCCCccc----HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-
Q 004735 538 YGREFRERLLGRWGIVD----VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS- 611 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~----~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~- 611 (732)
|.+............. .+|+.+.++.+.....+++.+++|+|||+||.+++.++. +|++++++|+++|.....
T Consensus 98 -G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 176 (398)
T 2y6u_A 98 -GDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRK 176 (398)
T ss_dssp -HHHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCC
T ss_pred -CCCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccccccc
Confidence 4443221100001122 344444444432211234445999999999999999988 999999999999865431
Q ss_pred ------------------HHHhhc-----ch-----hhhhhhhh-h-cC--Chh---hhh--------------------
Q 004735 612 ------------------MLRAET-----HK-----FESRYIDN-L-VG--SEK---DYY-------------------- 636 (732)
Q Consensus 612 ------------------~~~~~~-----~~-----~~~~~~~~-~-~~--~~~---~~~-------------------- 636 (732)
.+.... .. ....++.. . .. +++ .+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (398)
T 2y6u_A 177 AIGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTK 256 (398)
T ss_dssp CCSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEES
T ss_pred ccccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEec
Confidence 000000 00 00000000 0 00 000 000
Q ss_pred ----------------hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHH
Q 004735 637 ----------------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIK 700 (732)
Q Consensus 637 ----------------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~ 700 (732)
.......+.++++|+|+++|++|.++|++.+.++.+.+. ++++++++++||.+. .+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~~~~~~~l~~~~~----~~~~~~~~~~gH~~~-~e~p~ 331 (398)
T 2y6u_A 257 MEQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTLQ----NYHLDVIPGGSHLVN-VEAPD 331 (398)
T ss_dssp SCHHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSCHHHHHHHHHHCS----SEEEEEETTCCTTHH-HHSHH
T ss_pred CCchhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCCHHHHHHHHHhCC----CceEEEeCCCCccch-hcCHH
Confidence 001123467789999999999999999998888877664 579999999999653 35677
Q ss_pred HHHHHHHHHHHHHhCC
Q 004735 701 FTLEQQMVFFARVVGH 716 (732)
Q Consensus 701 ~~~~~~~~fl~~~l~~ 716 (732)
++.+.+.+||.+++..
T Consensus 332 ~~~~~i~~fl~~~~~~ 347 (398)
T 2y6u_A 332 LVIERINHHIHEFVLT 347 (398)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999998863
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-16 Score=159.46 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=137.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~ 549 (732)
+|.++++..+-+. ..|.||++||.+.. ...|.. .+..|+++||.|+++|+||.+.+.... ...
T Consensus 9 ~g~~l~y~~~G~~----------~~~~vvllHG~~~~--~~~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~~--~~~-- 72 (298)
T 1q0r_A 9 GDVELWSDDFGDP----------ADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRDTGRSTTRD--FAA-- 72 (298)
T ss_dssp TTEEEEEEEESCT----------TSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTTSTTSCCCC--TTT--
T ss_pred CCeEEEEEeccCC----------CCCeEEEEcCCCCC--ccchHHHHHHHHHhCCCEEEeeCCCCCCCCCCCC--CCc--
Confidence 7888887766432 23689999998543 345555 458888999999999999876543200 001
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC-CH--H--------------
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA-DL--S-------------- 611 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~-d~--~-------------- 611 (732)
....+++..+.+..+++.. +.+++.|+|||+||.+++.++. +|++++++|++++.. .. .
T Consensus 73 -~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
T 1q0r_A 73 -HPYGFGELAADAVAVLDGW--GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLD 149 (298)
T ss_dssp -SCCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSS
T ss_pred -CCcCHHHHHHHHHHHHHHh--CCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCcccccchhhhhhhhhhhc
Confidence 1123455554444444442 3468999999999999999988 999999999987644 21 0
Q ss_pred -------H----HHh------hcchhhhhhhh---hh----c-CCh-----------------hhh--hh------cCcc
Q 004735 612 -------M----LRA------ETHKFESRYID---NL----V-GSE-----------------KDY--YE------KSPI 641 (732)
Q Consensus 612 -------~----~~~------~~~~~~~~~~~---~~----~-~~~-----------------~~~--~~------~sp~ 641 (732)
. +.. ....+...+.. .. . -++ ..+ .. .+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (298)
T 1q0r_A 150 GLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSR 229 (298)
T ss_dssp CSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGG
T ss_pred ccccccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchhhhhhhhhcCcccc
Confidence 0 000 00000000000 00 0 000 000 00 0111
Q ss_pred cc-CCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 642 NF-VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 642 ~~-~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.. +.++++|+|+++|++|.++|++.++.+.+.+. +.++++++++||. ...++.+.+.+|+.+++.
T Consensus 230 ~~~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gHe-----~p~~~~~~i~~fl~~~~~ 295 (298)
T 1q0r_A 230 AAELREVTVPTLVIQAEHDPIAPAPHGKHLAGLIP----TARLAEIPGMGHA-----LPSSVHGPLAEVILAHTR 295 (298)
T ss_dssp GGGGGGCCSCEEEEEETTCSSSCTTHHHHHHHTST----TEEEEEETTCCSS-----CCGGGHHHHHHHHHHHHH
T ss_pred cccccccCCCEEEEEeCCCccCCHHHHHHHHHhCC----CCEEEEcCCCCCC-----CcHHHHHHHHHHHHHHhh
Confidence 23 67789999999999999999988877766553 5699999999992 235677888899987653
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-15 Score=154.49 Aligned_cols=259 Identities=9% Similarity=0.056 Sum_probs=181.5
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC-------------C
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD-------------Q 165 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~-------------~ 165 (732)
|+.+||....+. ..|++.+.++ ...++|.+.. ...+.++++.|+|++... .
T Consensus 25 g~~iy~~n~~d~----~~ly~~~~dg-~~~~~l~~~~-----------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~ 88 (302)
T 3s25_A 25 DGEVFFSNTNDN----GRLYAMNIDG-SNIHKLSNDT-----------AMYINADKNYVYYVRNNNQKITSQTFFSYDRN 88 (302)
T ss_dssp TTEEEEEEGGGT----TEEEEEETTS-CSCEEEEEEE-----------EEEEEECSSEEEEEEECC------CCSSCCSE
T ss_pred CCEEEEEeCCCC----ceEEEEcCCC-CCCEEccCCc-----------eeeEEEcCCEEEEEECCCCcccccceeccCCC
Confidence 999999876432 2688887763 3556665432 134577889999997653 4
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
.||++++++ ++.++|+.. ....|+|+|++|+|+.....+ ...||++++++.. .++|+....
T Consensus 89 ~Iy~i~~dg--~~~~~l~~~--------~~~~~s~~g~~Iy~~~~~~~~-----~~~Iy~~~~dGs~---~~~lt~~~~- 149 (302)
T 3s25_A 89 SLCRIKRNG--HGSTVLDPD--------PCIYASLIGNYIYYLHYDTQT-----ATSLYRIRIDGEE---KKKIKNHYL- 149 (302)
T ss_dssp EEEEEETTS--CCCEEEECS--------CEEEEEEETTEEEEEEESSSS-----CEEEEEEETTSCC---CEEEESSCC-
T ss_pred eEEEEeCCC--CcceEeecC--------CccEEEEeCCEEEEEeecCCC-----CceEEEEECCCCC---eEEEeCCCc-
Confidence 899999998 777888865 122689999999888621111 3799999999887 788886543
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCe
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 324 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~ 324 (732)
+.++|||++|+|++. + ..+|++++++ ++.. .+++.+. . ..|. .|+|+ |+|+... .+
T Consensus 150 ---~~~~~~g~~iy~t~~---g----~~~Iy~~~l~-g~~~--~~l~~~~-----~--~~~~-~P~g~~iy~t~~~-~~- 206 (302)
T 3s25_A 150 ---FTCNTSDRYFYYNNP---K----NGQLYRYDTA-SQSE--ALFYDCN-----C--YKPV-VLDDTNVYYMDVN-RD- 206 (302)
T ss_dssp ---CCSEEETTEEEEECT---T----TCCEEEEETT-TTEE--EEEECSC-----E--EEEE-EEETTEEEEEEGG-GT-
T ss_pred ---eEeeEECCEEEEEeC---C----CceEEEEECC-CCCE--EEEeCCC-----c--ccee-eecCCEEEEEEcC-CC-
Confidence 568999999999873 1 3459999987 5543 2334332 2 2344 49998 8887654 34
Q ss_pred eeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceE
Q 004735 325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID 404 (732)
Q Consensus 325 ~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~ 404 (732)
.+|++++++++..+.|+... .+.|.+ +++.|||+....+ .+|++++++|...++|.... +.
T Consensus 207 ~~I~~~~ldG~~~~~Lt~~~----~~~~~~------------~g~~Iy~~~~~~~-~~i~~~~~DG~~r~~l~~~~--~~ 267 (302)
T 3s25_A 207 NAIVHVNINNPNPVVLTEAN----IEHYNV------------YGSLIFYQRGGDN-PALCVVKNDGTGFKELAKGE--FC 267 (302)
T ss_dssp TEEEEECSSSCCCEECSCSC----EEEEEE------------ETTEEEEEECSSS-CEEEEEETTSCCCEEEEESC--EE
T ss_pred cEEEEEECCCCCeEEEeCCC----cceEEE------------CCCEEEEEECCCC-cEEEEEECCCCccEEeeCCc--cc
Confidence 78999999999888887542 133333 7889999876544 78999999998888887653 44
Q ss_pred EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 405 NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
.+..-++.++|.-.... .|+++++++...+
T Consensus 268 ~i~i~~d~Iy~td~~~~---~i~~~~~dGs~~~ 297 (302)
T 3s25_A 268 NINVTSQYVYFTDFVSN---KEYCTSTQNPDTI 297 (302)
T ss_dssp EEEECSSEEEEEETTTC---CEEEEESSSCCSC
T ss_pred eEEEeCCEEEEEECCCC---eEEEEECCCCCce
Confidence 55556667766553322 3999998876543
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=171.51 Aligned_cols=221 Identities=17% Similarity=0.183 Sum_probs=142.2
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhH
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~ 543 (732)
+.+.+. +|..+++.... ..|.||++||++... ..|...+..|+++||.|+++|+||.+......
T Consensus 6 ~~~~~~-dG~~l~y~~~G------------~gp~VV~lHG~~~~~--~~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~~~- 69 (456)
T 3vdx_A 6 VGQENS-TSIDLYYEDHG------------TGVPVVLIHGFPLSG--HSWERQSAALLDAGYRVITYDRRGFGQSSQPT- 69 (456)
T ss_dssp EEEETT-EEEEEEEEEES------------SSEEEEEECCTTCCG--GGGTTHHHHHHHHTEEEEEECCTTSTTSCCCS-
T ss_pred eccccc-CCeEEEEEEeC------------CCCEEEEECCCCCcH--HHHHHHHHHHHHCCcEEEEECCCCCCCCCCCC-
Confidence 444555 78777744331 238899999985443 44667788898999999999999866543211
Q ss_pred HhhccCCCc-ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCCHH---------
Q 004735 544 ERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADLS--------- 611 (732)
Q Consensus 544 ~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d~~--------- 611 (732)
..+.. ...+|+.+.++++ +.++++++|||+||++++.+++ + |++++++|++++.....
T Consensus 70 ----~~~s~~~~a~dl~~~l~~l------~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~ 139 (456)
T 3vdx_A 70 ----TGYDYDTFAADLNTVLETL------DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDG 139 (456)
T ss_dssp ----SCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSC
T ss_pred ----CCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccc
Confidence 11111 1144455555554 3468999999999998888877 4 99999999999865310
Q ss_pred ----HHHh--------hcchhhhhhhhhhcC---------Chhhh---------------------hhcCccccCCCCCC
Q 004735 612 ----MLRA--------ETHKFESRYIDNLVG---------SEKDY---------------------YEKSPINFVDKFSC 649 (732)
Q Consensus 612 ----~~~~--------~~~~~~~~~~~~~~~---------~~~~~---------------------~~~sp~~~~~~i~~ 649 (732)
.... ....+...++...+. ....+ ...+....+.++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~ 219 (456)
T 3vdx_A 140 AAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDV 219 (456)
T ss_dssp SBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTCCS
T ss_pred cchHHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhCCC
Confidence 0000 000000011111110 00000 01133345678899
Q ss_pred CEEEEEeCCCCccChH-HHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 650 PIILFQGLEDKVVPPD-QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
|+|+++|++|.++|++ ....+.+.+ .++++++++++||.+.. +....+.+.+.+||++.+.
T Consensus 220 PvLiI~G~~D~~vp~~~~~~~l~~~~----~~~~~~~i~gagH~~~~-e~p~~v~~~I~~FL~~~l~ 281 (456)
T 3vdx_A 220 PALILHGTGDRTLPIENTARVFHKAL----PSAEYVEVEGAPHGLLW-THAEEVNTALLAFLAKALE 281 (456)
T ss_dssp CCEEEEETTCSSSCGGGTHHHHHHHC----TTSEEEEETTCCSCTTT-TTHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHHC----CCceEEEeCCCCCcchh-hCHHHHHHHHHHHHHHhhc
Confidence 9999999999999998 444444433 25699999999997544 6788999999999998774
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=163.21 Aligned_cols=218 Identities=13% Similarity=0.085 Sum_probs=143.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++....+ .|.||++||.+.. ...|...+..|..+||.|+++|+||.+..... .
T Consensus 17 ~g~~l~~~~~g~------------~~~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~S~~~-----~--- 74 (309)
T 3u1t_A 17 EGATIAYVDEGS------------GQPVLFLHGNPTS--SYLWRNIIPYVVAAGYRAVAPDLIGMGDSAKP-----D--- 74 (309)
T ss_dssp TTEEEEEEEEEC------------SSEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTTSCCC-----S---
T ss_pred CCeEEEEEEcCC------------CCEEEEECCCcch--hhhHHHHHHHHHhCCCEEEEEccCCCCCCCCC-----C---
Confidence 688887655422 3789999998544 34466677777889999999999976553321 1
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-------HHHhh------
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-------MLRAE------ 616 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-------~~~~~------ 616 (732)
.....++..+.+..+++.. +.++++|+|||+||++++.++. +|++++++|++++..... .+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (309)
T 3u1t_A 75 IEYRLQDHVAYMDGFIDAL--GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFR 152 (309)
T ss_dssp SCCCHHHHHHHHHHHHHHH--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHc--CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHH
Confidence 1234555555555555542 3468999999999999999988 999999999998754322 00000
Q ss_pred --------------cchhhhhhhhhh-cC---Ch---hhhhh-----------------c--------------CccccC
Q 004735 617 --------------THKFESRYIDNL-VG---SE---KDYYE-----------------K--------------SPINFV 644 (732)
Q Consensus 617 --------------~~~~~~~~~~~~-~~---~~---~~~~~-----------------~--------------sp~~~~ 644 (732)
...+...++... .. .. +.+.. . +....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (309)
T 3u1t_A 153 DLRTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWL 232 (309)
T ss_dssp HHTSTTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHH
T ss_pred HHhccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhc
Confidence 000000010000 00 00 00000 0 001124
Q ss_pred CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCC
Q 004735 645 DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 645 ~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
.++++|+|+++|++|.++|++...++.+.+. +.++++++++||.+ ..+..+++.+.+.+||++..+..
T Consensus 233 ~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~~~~~ 300 (309)
T 3u1t_A 233 MASPIPKLLFHAEPGALAPKPVVDYLSENVP----NLEVRFVGAGTHFL-QEDHPHLIGQGIADWLRRNKPHA 300 (309)
T ss_dssp HHCCSCEEEEEEEECSSSCHHHHHHHHHHST----TEEEEEEEEESSCH-HHHCHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCCEEEEecCCCCCCCHHHHHHHHhhCC----CCEEEEecCCcccc-hhhCHHHHHHHHHHHHHhcchhh
Confidence 5678999999999999999988888887764 45778889999954 33577888999999999988743
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=153.30 Aligned_cols=181 Identities=12% Similarity=0.032 Sum_probs=122.3
Q ss_pred CCCEEEEEcCCCCCcc-CCcccH-HHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 494 KPPLLVKSHGGPTSEA-RGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~-~~~~~~-~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
+.|.||++||++.... ...+.. ....|+++ ||.|+++|+||... .+....++.+.+...
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~------------------~~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT------------------ARESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT------------------CCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc------------------ccHHHHHHHHHHHhC
Confidence 3589999999865432 233444 67778877 99999999997421 123344445555433
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC 649 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~ 649 (732)
. .++++++|||+||.+++.++. +| ++++|+.+|........ ......++..+ .....+.++.+
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~-------~~~~~~~~~~~------~~~~~~~~~~~ 128 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDE-------NERASGYFTRP------WQWEKIKANCP 128 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCH-------HHHHTSTTSSC------CCHHHHHHHCS
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchh-------hhHHHhhhccc------ccHHHHHhhCC
Confidence 2 378999999999999999988 87 99999999876421100 00001111111 11122233467
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
|+|+++|++|.++|++.++++.+.+ . .++++++++||.+.. +. .+.+..+++|+++...
T Consensus 129 p~lii~G~~D~~vp~~~~~~~~~~~-~----~~~~~~~~~gH~~~~-~~-p~~~~~~~~fl~~~~~ 187 (194)
T 2qs9_A 129 YIVQFGSTDDPFLPWKEQQEVADRL-E----TKLHKFTDCGHFQNT-EF-HELITVVKSLLKVPAL 187 (194)
T ss_dssp EEEEEEETTCSSSCHHHHHHHHHHH-T----CEEEEESSCTTSCSS-CC-HHHHHHHHHHHTCCCC
T ss_pred CEEEEEeCCCCcCCHHHHHHHHHhc-C----CeEEEeCCCCCccch-hC-HHHHHHHHHHHHhhhh
Confidence 9999999999999999999998888 2 389999999997653 33 3455666788887665
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=165.14 Aligned_cols=229 Identities=15% Similarity=0.174 Sum_probs=138.9
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHH-CCCEEEEEcCCCCCCCChh
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~~g~g~~ 541 (732)
...+.. +|.++++..+-+... +.+.+.||++||+++... .|......|+. .||.|+++|+||.|.+...
T Consensus 30 ~~~v~~--~g~~l~y~~~G~~~~------~~~g~plvllHG~~~~~~--~w~~~~~~l~~~~~~~Via~D~rG~G~S~~~ 99 (330)
T 3nwo_A 30 SRTVPF--GDHETWVQVTTPENA------QPHALPLIVLHGGPGMAH--NYVANIAALADETGRTVIHYDQVGCGNSTHL 99 (330)
T ss_dssp EEEEEE--TTEEEEEEEECCSSC------CTTCCCEEEECCTTTCCS--GGGGGGGGHHHHHTCCEEEECCTTSTTSCCC
T ss_pred ceeEee--cCcEEEEEEecCccC------CCCCCcEEEECCCCCCch--hHHHHHHHhccccCcEEEEECCCCCCCCCCC
Confidence 344444 689999888876420 111225888999865443 34444455665 6999999999987654321
Q ss_pred hHHhhccCCCc-ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc--
Q 004735 542 FRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-- 617 (732)
Q Consensus 542 ~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-- 617 (732)
- ......+.. ...+|+.+.++.+ ..+++.|+||||||++++.++. +|++++++|+.++......+....
T Consensus 100 ~-~~~~~~~~~~~~a~dl~~ll~~l------g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~ 172 (330)
T 3nwo_A 100 P-DAPADFWTPQLFVDEFHAVCTAL------GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAGD 172 (330)
T ss_dssp T-TSCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHHHHHHHH
T ss_pred C-CCccccccHHHHHHHHHHHHHHc------CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHHHHHHHH
Confidence 0 000001110 1134444444444 2368999999999999999998 999999999988765432110000
Q ss_pred ------------------------chh---hhhhhhhhcC------------------Chhhh---------------hh
Q 004735 618 ------------------------HKF---ESRYIDNLVG------------------SEKDY---------------YE 637 (732)
Q Consensus 618 ------------------------~~~---~~~~~~~~~~------------------~~~~~---------------~~ 637 (732)
..+ ...+...... ++..| ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
T 3nwo_A 173 LRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGPNEFHVVGTLGD 252 (330)
T ss_dssp HHHHSCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHSCHHHHHHTCSCSSSCCSGGGG
T ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccccCCCHHHHHHHHhhccchhhhhcccCchhhhhhccccC
Confidence 000 0000000000 00011 11
Q ss_pred cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 638 KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 638 ~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.+....+.+|++|+|+++|++|.++| ....++.+.+. +.++++++++||.. ..+..+++.+.+.+||++.-
T Consensus 253 ~~~~~~l~~i~~P~Lvi~G~~D~~~p-~~~~~~~~~ip----~~~~~~i~~~gH~~-~~e~p~~~~~~i~~FL~~~~ 323 (330)
T 3nwo_A 253 WSVIDRLPDVTAPVLVIAGEHDEATP-KTWQPFVDHIP----DVRSHVFPGTSHCT-HLEKPEEFRAVVAQFLHQHD 323 (330)
T ss_dssp CBCGGGGGGCCSCEEEEEETTCSSCH-HHHHHHHHHCS----SEEEEEETTCCTTH-HHHSHHHHHHHHHHHHHHHH
T ss_pred CchhhhcccCCCCeEEEeeCCCccCh-HHHHHHHHhCC----CCcEEEeCCCCCch-hhcCHHHHHHHHHHHHHhcc
Confidence 12233466789999999999999765 45556655443 67999999999964 34677888999999998764
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=161.96 Aligned_cols=218 Identities=17% Similarity=0.148 Sum_probs=133.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+.+ +.+.|.||++||+++.... .+... ..+++.||.|+++|+||.+...... ...
T Consensus 13 ~g~~l~~~~~g~---------~~~~~~vvllHG~~~~~~~-~~~~~-~~l~~~g~~vi~~D~~G~G~S~~~~----~~~- 76 (293)
T 1mtz_A 13 NGIYIYYKLCKA---------PEEKAKLMTMHGGPGMSHD-YLLSL-RDMTKEGITVLFYDQFGCGRSEEPD----QSK- 76 (293)
T ss_dssp TTEEEEEEEECC---------SSCSEEEEEECCTTTCCSG-GGGGG-GGGGGGTEEEEEECCTTSTTSCCCC----GGG-
T ss_pred CCEEEEEEEECC---------CCCCCeEEEEeCCCCcchh-HHHHH-HHHHhcCcEEEEecCCCCccCCCCC----CCc-
Confidence 688887665533 1123679999997544322 22222 3346789999999999876543221 001
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc-------ch---
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-------HK--- 619 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-------~~--- 619 (732)
..+++..+.+..+++.. .+.+++.|+|||+||.+++.++. +|++++++|+.++......+.... ..
T Consensus 77 --~~~~~~~~dl~~~~~~l-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (293)
T 1mtz_A 77 --FTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYR 153 (293)
T ss_dssp --CSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHH
T ss_pred --ccHHHHHHHHHHHHHHh-cCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHHHHHHHhcCHHHH
Confidence 22333333333333331 01258999999999999999988 899999999999876532211000 00
Q ss_pred ----------------h---hhhhhhhhc----CChh-------------hhh---------------hcCccccCCCCC
Q 004735 620 ----------------F---ESRYIDNLV----GSEK-------------DYY---------------EKSPINFVDKFS 648 (732)
Q Consensus 620 ----------------~---~~~~~~~~~----~~~~-------------~~~---------------~~sp~~~~~~i~ 648 (732)
+ ...+..... ..++ .+. ..+....+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 233 (293)
T 1mtz_A 154 DAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIK 233 (293)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGCC
T ss_pred HHHHHhhccCCcChHHHHHHHHHHHHhhcccccCchHHHHHhHhhhccchhhhhccCcceecccccccCCChhhhhccCC
Confidence 0 000000000 0000 000 111123356688
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
+|+|+++|++| .+++..+.++.+.+. +.++++++++||... .+..+++.+.+.+||.++
T Consensus 234 ~P~lii~G~~D-~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~ 292 (293)
T 1mtz_A 234 IPTLITVGEYD-EVTPNVARVIHEKIA----GSELHVFRDCSHLTM-WEDREGYNKLLSDFILKH 292 (293)
T ss_dssp SCEEEEEETTC-SSCHHHHHHHHHHST----TCEEEEETTCCSCHH-HHSHHHHHHHHHHHHHTC
T ss_pred CCEEEEeeCCC-CCCHHHHHHHHHhCC----CceEEEeCCCCCCcc-ccCHHHHHHHHHHHHHhc
Confidence 99999999999 677877777776653 469999999999753 356778888899998764
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-17 Score=172.02 Aligned_cols=241 Identities=13% Similarity=0.136 Sum_probs=149.6
Q ss_pred EEeeccCCCeEE----EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC-----------CcccHHH---HHHHHCCC
Q 004735 464 IEFPTEVPGQKA----YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-----------GILNLSI---QYWTSRGW 525 (732)
Q Consensus 464 i~~~~~~~g~~i----~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~-----------~~~~~~~---~~l~~~G~ 525 (732)
..+... +|..+ ++..+-+.+ ..+.|+||++||.+..... ..|..++ +.|...||
T Consensus 15 ~~~~~~-~g~~l~~~i~y~~~g~~~-------~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~ 86 (377)
T 3i1i_A 15 KEYTFE-NGRTIPVQMGYETYGTLN-------RERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQY 86 (377)
T ss_dssp EEEECT-TSCEEEEEEEEEEESCCC-------TTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTC
T ss_pred cceeec-CCCEeeeeEEEEeecccC-------CCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccE
Confidence 345554 55544 444443332 3346899999998655333 0133333 45667899
Q ss_pred EEEEEcCCCCC--------CCChhhHHhhc-----cCCCcccHHHHHHHHHHHHhcCCCCCCcEE-EEEcChHHHHHHHH
Q 004735 526 AFVDVNYGGST--------GYGREFRERLL-----GRWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAA 591 (732)
Q Consensus 526 ~v~~~d~rG~~--------g~g~~~~~~~~-----~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~ 591 (732)
.|+++|+||.+ +.|.+...... ..+....++|+.+.+..+++.. +.+++. |+||||||.+++.+
T Consensus 87 ~vi~~D~~G~G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~l--~~~~~~ilvGhS~Gg~ia~~~ 164 (377)
T 3i1i_A 87 FVICTDNLCNVQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKDM--GIARLHAVMGPSAGGMIAQQW 164 (377)
T ss_dssp EEEEECCTTCSCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT--TCCCBSEEEEETHHHHHHHHH
T ss_pred EEEEecccccccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHHc--CCCcEeeEEeeCHhHHHHHHH
Confidence 99999999653 22222111100 0112345778888877777663 345785 99999999999999
Q ss_pred Hh-CCCcceEEEe-ecCcCCHHHHHh-----------hcch--------------------------hhhhhhhhhcC--
Q 004735 592 LA-FRDTFKAGAS-LYGVADLSMLRA-----------ETHK--------------------------FESRYIDNLVG-- 630 (732)
Q Consensus 592 ~~-~p~~~~a~v~-~~~~~d~~~~~~-----------~~~~--------------------------~~~~~~~~~~~-- 630 (732)
+. +|++++++|+ .++......... .... .....+...+.
T Consensus 165 a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (377)
T 3i1i_A 165 AVHYPHMVERMIGVITNPQNPIITSVNVAQNAIEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRN 244 (377)
T ss_dssp HHHCTTTBSEEEEESCCSBCCHHHHHHTTHHHHHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCC
T ss_pred HHHChHHHHHhcccCcCCCcCCchhhHHHHHHHHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhh
Confidence 88 9999999999 655443110000 0000 00000000000
Q ss_pred -------------------------------Chhhhh-------hcCc-------cccCCCCCCCEEEEEeCCCCccChH
Q 004735 631 -------------------------------SEKDYY-------EKSP-------INFVDKFSCPIILFQGLEDKVVPPD 665 (732)
Q Consensus 631 -------------------------------~~~~~~-------~~sp-------~~~~~~i~~P~Lii~G~~D~~v~~~ 665 (732)
+...+. ..+. ...+.++++|+|+++|++|.+++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~ 324 (377)
T 3i1i_A 245 SIEVEPYEKVSSLTSFEKEINKLTYRSIELVDANSWMYTAKAVLLHDIAHGFSSLEEALSNVEANVLMIPCKQDLLQPSR 324 (377)
T ss_dssp SSCCGGGTCTTCCCHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHCBTTTTSSCHHHHHHTCCSEEEEECBTTCSSSCTH
T ss_pred hccccccccccchhHHHHHHHHHHhhhhcccCHHHHHHHHHHHhhcccccccCCHHHHHhhCCCCEEEEecCCccccCHH
Confidence 000000 0011 2235678999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 666 QARKIYKALKENGLPVALVEYEG-EQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.++++.+.+++.+.+++++++++ +||... .+..+++.+.+.+||++.+.
T Consensus 325 ~~~~~~~~~~~~g~~~~~~~i~~~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 374 (377)
T 3i1i_A 325 YNYKMVDLLQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKVYEFLNRKVS 374 (377)
T ss_dssp HHHHHHHHHHHTTCCEEECCBCCTTGGGHH-HHCGGGTHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhcCCCceEEEcCCCCCCcch-hcCHHHHHHHHHHHHHhhhh
Confidence 99999999988777889999998 999643 23456778888899887654
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=165.01 Aligned_cols=198 Identities=17% Similarity=0.200 Sum_probs=124.8
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
|.||++||.+.. ...|...+..|+++||.|+++|+||.+...... ..+.. ...+|+.+.++.+ +.+
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~-----~~~~~~~~~~dl~~~l~~l------~~~ 90 (279)
T 1hkh_A 24 QPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRGFGGSSKVN-----TGYDYDTFAADLHTVLETL------DLR 90 (279)
T ss_dssp EEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTSTTSCCCS-----SCCSHHHHHHHHHHHHHHH------TCC
T ss_pred CcEEEEcCCCch--hhHHhhhHHHHHhCCcEEEEeCCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHhc------CCC
Confidence 349999998543 456777888999999999999999876543211 11110 1134444444444 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCC-cceEEEeecCcCCH-------------HHH---Hhh----cchhh----hhhhhh-
Q 004735 575 RLCITGGSAGGYTTLAALA-FRD-TFKAGASLYGVADL-------------SML---RAE----THKFE----SRYIDN- 627 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~-~~~a~v~~~~~~d~-------------~~~---~~~----~~~~~----~~~~~~- 627 (732)
++.|+||||||.+++.++. +|+ +++++|+.++.... ..+ ... ...+. ..+...
T Consensus 91 ~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (279)
T 1hkh_A 91 DVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLD 170 (279)
T ss_dssp SEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHH
T ss_pred ceEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhHHHHHhhhhhcc
Confidence 8999999999999999888 898 99999999874321 000 000 00000 000000
Q ss_pred -----hcC--------------Chhhh----h--hcCccccCCCC---CCCEEEEEeCCCCccChHHH-HHHHHHHHhCC
Q 004735 628 -----LVG--------------SEKDY----Y--EKSPINFVDKF---SCPIILFQGLEDKVVPPDQA-RKIYKALKENG 678 (732)
Q Consensus 628 -----~~~--------------~~~~~----~--~~sp~~~~~~i---~~P~Lii~G~~D~~v~~~~~-~~~~~~l~~~g 678 (732)
... ....+ . ..+....+.++ ++|+|+++|++|.++|++.+ +.+.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~--- 247 (279)
T 1hkh_A 171 ENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVP--- 247 (279)
T ss_dssp HHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHCT---
T ss_pred cCCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHHhccCCCCEEEEEcCCCccCChHHHHHHHHHhCC---
Confidence 000 00000 0 01111234566 89999999999999998876 66666553
Q ss_pred CCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 679 LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 679 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+.++++++++||... .++.+++.+.+.+||+
T Consensus 248 -~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 248 -EADYVEVEGAPHGLL-WTHADEVNAALKTFLA 278 (279)
T ss_dssp -TSEEEEETTCCTTHH-HHTHHHHHHHHHHHHH
T ss_pred -CeeEEEeCCCCccch-hcCHHHHHHHHHHHhh
Confidence 458999999999753 3566778888888875
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-16 Score=156.67 Aligned_cols=202 Identities=11% Similarity=0.051 Sum_probs=130.1
Q ss_pred CEEEEEcCCC-CCccCCcccHHH-HHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 496 PLLVKSHGGP-TSEARGILNLSI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 496 P~vl~~HGg~-~~~~~~~~~~~~-~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
|.||++||.+ +......|...+ ..|++. |.|+++|+||.+.+... .. ....+++..+.+..++++. +.
T Consensus 34 ~~vvllHG~~~~~~~~~~w~~~~~~~L~~~-~~vi~~D~~G~G~S~~~-----~~--~~~~~~~~a~dl~~~l~~l--~~ 103 (286)
T 2puj_A 34 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDAV-----VM--DEQRGLVNARAVKGLMDAL--DI 103 (286)
T ss_dssp SEEEEECCCSTTCCHHHHHTTTHHHHHHTT-CEEEEECCTTSTTSCCC-----CC--SSCHHHHHHHHHHHHHHHT--TC
T ss_pred CcEEEECCCCCCCCcHHHHHHHHHHHHhcc-CEEEEECCCCCCCCCCC-----CC--cCcCHHHHHHHHHHHHHHh--CC
Confidence 6899999973 223334455566 777665 99999999976543321 00 0133555555555555543 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH------------HHHHhh---c-chhhhhhhhhhc-------
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL------------SMLRAE---T-HKFESRYIDNLV------- 629 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~------------~~~~~~---~-~~~~~~~~~~~~------- 629 (732)
+++.|+||||||.+++.++. +|++++++|++++.... ...... . ......++....
T Consensus 104 ~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (286)
T 2puj_A 104 DRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLIT 183 (286)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGCC
T ss_pred CceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccCC
Confidence 68999999999999999998 99999999999875310 000000 0 000000000000
Q ss_pred ------------CChhhh---h---------hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 630 ------------GSEKDY---Y---------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 630 ------------~~~~~~---~---------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
.++..+ . ..+....+.++++|+|+++|++|.++|+..++++.+.++ +.++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~----~~~~~~ 259 (286)
T 2puj_A 184 EELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID----DARLHV 259 (286)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS----SEEEEE
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCCEEEEEECCCCccCHHHHHHHHHHCC----CCeEEE
Confidence 011000 0 112234567889999999999999999988888877664 569999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
++++||.. ..+..+++.+.+.+||++
T Consensus 260 i~~~gH~~-~~e~p~~~~~~i~~fl~~ 285 (286)
T 2puj_A 260 FSKCGAWA-QWEHADEFNRLVIDFLRH 285 (286)
T ss_dssp ESSCCSCH-HHHTHHHHHHHHHHHHHH
T ss_pred eCCCCCCc-cccCHHHHHHHHHHHHhc
Confidence 99999964 335667888888898864
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=165.52 Aligned_cols=227 Identities=12% Similarity=0.083 Sum_probs=139.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+...+... +.++++....+ ..|.||++||++.. ...|......+.++||.|+++|+||.+.....
T Consensus 4 ~~~~~~~~--~~~~~~~~~~~-----------~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~ 68 (279)
T 4g9e_A 4 NYHELETS--HGRIAVRESEG-----------EGAPLLMIHGNSSS--GAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDA 68 (279)
T ss_dssp EEEEEEET--TEEEEEEECCC-----------CEEEEEEECCTTCC--GGGGHHHHHSHHHHHEEEEEECCTTSTTSCCC
T ss_pred EEEEEEcC--CceEEEEecCC-----------CCCeEEEECCCCCc--hhHHHHHHhHHHhcCCeEEeecCCCCCCCCCC
Confidence 44566664 55666443322 34789999998543 44566777777788999999999987654432
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC-CHHHHHhhcc-
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA-DLSMLRAETH- 618 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~-d~~~~~~~~~- 618 (732)
.... .....++..+.+..+++.. +.++++++|||+||.+++.++. +|+ +.++++.++.. ..........
T Consensus 69 ~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~~~~~~~~~~~~~~ 140 (279)
T 4g9e_A 69 IDPD-----RSYSMEGYADAMTEVMQQL--GIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTPPVAREEVGQGFKS 140 (279)
T ss_dssp SCHH-----HHSSHHHHHHHHHHHHHHH--TCCCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCCCCCGGGHHHHBCC
T ss_pred CCcc-----cCCCHHHHHHHHHHHHHHh--CCCceEEEEECchHHHHHHHHhhCCc-ceeEEEecCCCCCCCccchhhcc
Confidence 1010 1123455555555555442 3458999999999999999998 888 66666655433 2211110000
Q ss_pred --------------hhhhhhhhhhcC---Ch---h---------------hh---hhcCccccCCCCCCCEEEEEeCCCC
Q 004735 619 --------------KFESRYIDNLVG---SE---K---------------DY---YEKSPINFVDKFSCPIILFQGLEDK 660 (732)
Q Consensus 619 --------------~~~~~~~~~~~~---~~---~---------------~~---~~~sp~~~~~~i~~P~Lii~G~~D~ 660 (732)
.....+...... .. + .+ ...+....+.++++|+|+++|++|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~ 220 (279)
T 4g9e_A 141 GPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDEP 220 (279)
T ss_dssp STTGGGGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSCEEEEEETTCS
T ss_pred chhhhhcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCCEEEEEcCCCc
Confidence 000001111110 00 0 00 0011122356678999999999999
Q ss_pred ccChHHHHHHH-HHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 661 VVPPDQARKIY-KALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 661 ~v~~~~~~~~~-~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
+++++...++. +.+. ++++++++++||.. ..+...++.+.+.+||++.-+.
T Consensus 221 ~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~~~~ 272 (279)
T 4g9e_A 221 FVELDFVSKVKFGNLW----EGKTHVIDNAGHAP-FREAPAEFDAYLARFIRDCTQL 272 (279)
T ss_dssp SBCHHHHTTCCCSSBG----GGSCEEETTCCSCH-HHHSHHHHHHHHHHHHHHHHSS
T ss_pred ccchHHHHHHhhccCC----CCeEEEECCCCcch-HHhCHHHHHHHHHHHHHHhhhh
Confidence 99998777665 3222 45889999999974 3366788899999999988763
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=154.32 Aligned_cols=214 Identities=15% Similarity=0.142 Sum_probs=137.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+.+.+ ...|.||++||.+.. ...|...+..|++ +|.|+++|+||.+.+....
T Consensus 10 ~g~~l~y~~~g~~~--------~~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~~-------- 70 (266)
T 2xua_A 10 NGTELHYRIDGERH--------GNAPWIVLSNSLGTD--LSMWAPQVAALSK-HFRVLRYDTRGHGHSEAPK-------- 70 (266)
T ss_dssp SSSEEEEEEESCSS--------SCCCEEEEECCTTCC--GGGGGGGHHHHHT-TSEEEEECCTTSTTSCCCS--------
T ss_pred CCEEEEEEEcCCcc--------CCCCeEEEecCccCC--HHHHHHHHHHHhc-CeEEEEecCCCCCCCCCCC--------
Confidence 68888877765421 124789999997443 3456666777764 5999999999766543210
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH---HHHHhh--------cc
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---SMLRAE--------TH 618 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~---~~~~~~--------~~ 618 (732)
+...+++..+.+..+++.. ..+++.|+|||+||.+++.++. +|++++++|+.++.... ..+... ..
T Consensus 71 ~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
T 2xua_A 71 GPYTIEQLTGDVLGLMDTL--KIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMH 148 (266)
T ss_dssp SCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHH
T ss_pred CCCCHHHHHHHHHHHHHhc--CCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChH
Confidence 1123445554444444442 2358999999999999999988 99999999999875321 100000 00
Q ss_pred hhhhhhhhhhc---------------------CChhhh-------hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHH
Q 004735 619 KFESRYIDNLV---------------------GSEKDY-------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKI 670 (732)
Q Consensus 619 ~~~~~~~~~~~---------------------~~~~~~-------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~ 670 (732)
.+....+...+ .....+ ...+....+.++++|+|+++|++|.+++++.++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~ 228 (266)
T 2xua_A 149 ALADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQGREL 228 (266)
T ss_dssp HHHHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCCCcCCHHHHHHH
Confidence 00000000000 011111 11223345677899999999999999999888888
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 671 YKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
.+.+. +.++++++ +||... .+..+++.+.+.+||.
T Consensus 229 ~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~ 263 (266)
T 2xua_A 229 AQAIA----GARYVELD-ASHISN-IERADAFTKTVVDFLT 263 (266)
T ss_dssp HHHST----TCEEEEES-CCSSHH-HHTHHHHHHHHHHHHT
T ss_pred HHhCC----CCEEEEec-CCCCch-hcCHHHHHHHHHHHHH
Confidence 77764 34899999 999653 3456677778888875
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=151.05 Aligned_cols=182 Identities=12% Similarity=0.041 Sum_probs=120.8
Q ss_pred CCCEEEEEcCCCCCccCCcccHHH-HHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~-~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
..|.||++||.+..... .|.... ..|+++||.|+++|+|.+.. .+.++..+.+..+++..
T Consensus 3 g~p~vv~~HG~~~~~~~-~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~--- 63 (192)
T 1uxo_A 3 GTKQVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHTL--- 63 (192)
T ss_dssp -CCEEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGGC---
T ss_pred CCCEEEEEcCCCCCcch-hHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHhc---
Confidence 35889999998544321 344444 46888999999999983211 12455555555555442
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCC--cceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCC
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSC 649 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~ 649 (732)
.++++++|||+||.+++.++. +|+ +++++++.+|......... . +..+...+ .....+.++++
T Consensus 64 ~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~~~---~-----~~~~~~~~------~~~~~~~~~~~ 129 (192)
T 1uxo_A 64 HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQ---M-----LDEFTQGS------FDHQKIIESAK 129 (192)
T ss_dssp CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCG---G-----GGGGTCSC------CCHHHHHHHEE
T ss_pred cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccccch---h-----hhhhhhcC------CCHHHHHhhcC
Confidence 478999999999999999988 898 9999999998765321100 0 01111000 01122345568
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
|+|+++|++|.++|++.+.++.+.+ +.++++++++||.+.... . ..+..+++|+.++++
T Consensus 130 P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~-~-~~~~~~~~~l~~~l~ 188 (192)
T 1uxo_A 130 HRAVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQHGGHFLEDEG-F-TSLPIVYDVLTSYFS 188 (192)
T ss_dssp EEEEEEETTCSSSCHHHHHHHHHHT-----TCEEEEETTCTTSCGGGT-C-SCCHHHHHHHHHHHH
T ss_pred CEEEEecCCCCcCCHHHHHHHHHhc-----CceEEEeCCCcCcccccc-c-ccHHHHHHHHHHHHH
Confidence 9999999999999999998888876 348999999999764221 1 112335666666664
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=159.15 Aligned_cols=217 Identities=18% Similarity=0.102 Sum_probs=134.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCC-CCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~-~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~ 549 (732)
+|..+++....+ ...|+||++||.+ +......|...+..|++. |.|+++|+||.+...... .
T Consensus 15 ~g~~l~y~~~g~----------~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~-----~- 77 (285)
T 1c4x_A 15 GTLASHALVAGD----------PQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIGFGQSEYPE-----T- 77 (285)
T ss_dssp TTSCEEEEEESC----------TTSCEEEEECCCSTTCCHHHHHGGGHHHHHTT-SEEEEECCTTSTTSCCCS-----S-
T ss_pred CCEEEEEEecCC----------CCCCEEEEEeCCCCCCcchhhHHHHHHHHhhC-cEEEEecCCCCCCCCCCC-----C-
Confidence 677777654422 2347799999973 223334455566677655 999999999765443210 0
Q ss_pred CCcccHHHH----HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH--------HHHHhh
Q 004735 550 WGIVDVNDC----CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL--------SMLRAE 616 (732)
Q Consensus 550 ~~~~~~~D~----~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~--------~~~~~~ 616 (732)
....+++. .+.+..++++. +.+++.|+||||||.+++.++. +|++++++|+.++.... ......
T Consensus 78 -~~~~~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 154 (285)
T 1c4x_A 78 -YPGHIMSWVGMRVEQILGLMNHF--GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAF 154 (285)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHH--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTG
T ss_pred -cccchhhhhhhHHHHHHHHHHHh--CCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHH
Confidence 01234444 44444444332 2368999999999999999988 99999999999875421 000000
Q ss_pred c--c--hhhhhhhhhh-----------------c---CChhhhh---h------------cCccccCCCCCCCEEEEEeC
Q 004735 617 T--H--KFESRYIDNL-----------------V---GSEKDYY---E------------KSPINFVDKFSCPIILFQGL 657 (732)
Q Consensus 617 ~--~--~~~~~~~~~~-----------------~---~~~~~~~---~------------~sp~~~~~~i~~P~Lii~G~ 657 (732)
. . ......+... . .++..+. . ......+.++++|+|+++|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 234 (285)
T 1c4x_A 155 YADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGR 234 (285)
T ss_dssp GGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEET
T ss_pred hccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCCEEEEEeC
Confidence 0 0 0000000000 0 0110000 0 01123457889999999999
Q ss_pred CCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 658 EDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 658 ~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+|.++|++.++.+.+.+. +.++++++++||... .+..+++.+.+.+||.+
T Consensus 235 ~D~~~p~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 235 QDRIVPLDTSLYLTKHLK----HAELVVLDRCGHWAQ-LERWDAMGPMLMEHFRA 284 (285)
T ss_dssp TCSSSCTHHHHHHHHHCS----SEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHC
T ss_pred CCeeeCHHHHHHHHHhCC----CceEEEeCCCCcchh-hcCHHHHHHHHHHHHhc
Confidence 999999998888777653 569999999999643 35567788888888863
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=166.67 Aligned_cols=232 Identities=14% Similarity=0.075 Sum_probs=143.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-------cccHHHH---HHHHCCCEEEEEcCCC-CCCCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-------ILNLSIQ---YWTSRGWAFVDVNYGG-STGYG 539 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-------~~~~~~~---~l~~~G~~v~~~d~rG-~~g~g 539 (732)
+|.++++..+.+.+ ..+.|.||++||.+...... .|...+. .|++.||.|+++|+|| .++..
T Consensus 42 ~g~~l~y~~~g~~~-------~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~ 114 (377)
T 2b61_A 42 SYINVAYQTYGTLN-------DEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTT 114 (377)
T ss_dssp CSEEEEEEEESCCC-------TTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSS
T ss_pred cceeEEEEeccccc-------ccCCCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCC
Confidence 45566665554432 22358999999986554330 1443332 3657899999999998 34432
Q ss_pred hhhH-Hhh-----ccCCCcccHHHHHHHHHHHHhcCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH
Q 004735 540 REFR-ERL-----LGRWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 611 (732)
Q Consensus 540 ~~~~-~~~-----~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~ 611 (732)
.... ... ...+....++|+.+.+..+++.. +.+++. |+|||+||.+++.++. +|++++++|++++.....
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~l--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 192 (377)
T 2b61_A 115 GPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFS 192 (377)
T ss_dssp CTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCC
T ss_pred CCcccCccccccccccCCcccHHHHHHHHHHHHHHc--CCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCcccc
Confidence 2110 000 01111245777777777777653 346888 9999999999999988 999999999999864321
Q ss_pred H----H-------Hhhcch--------------------hh-------hhhhhhhcC-----------------------
Q 004735 612 M----L-------RAETHK--------------------FE-------SRYIDNLVG----------------------- 630 (732)
Q Consensus 612 ~----~-------~~~~~~--------------------~~-------~~~~~~~~~----------------------- 630 (732)
. + ...... .. ...+...+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (377)
T 2b61_A 193 AEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQ 272 (377)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHHHHhccccccccccccchHHHHHHHHhh
Confidence 0 0 000000 00 000000000
Q ss_pred --------Chhh-------hhhcC-------ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC-
Q 004735 631 --------SEKD-------YYEKS-------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE- 687 (732)
Q Consensus 631 --------~~~~-------~~~~s-------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~- 687 (732)
+... +...+ ....+.++++|+|+++|++|.++|+++..+..+.+.+...++++++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 352 (377)
T 2b61_A 273 GKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPS 352 (377)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred hhhhccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCcccCCccchHHHHHHHHhcCCCceEEEeCC
Confidence 0000 00011 124467889999999999999999966666666666666678999999
Q ss_pred CCCccCCCcccHHHHHHHHHHHHHH
Q 004735 688 GEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 688 ~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
++||.... +...++.+.+.+||++
T Consensus 353 ~~gH~~~~-e~p~~~~~~i~~fl~~ 376 (377)
T 2b61_A 353 DYGHDAFL-VDYDQFEKRIRDGLAG 376 (377)
T ss_dssp TTGGGHHH-HCHHHHHHHHHHHHHT
T ss_pred CCCchhhh-cCHHHHHHHHHHHHhc
Confidence 99997532 4566788888888864
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-15 Score=158.74 Aligned_cols=232 Identities=11% Similarity=0.160 Sum_probs=157.8
Q ss_pred ECCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 153 FGDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 153 ~~~~i~f~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
++.+|+|.... .++||++++++ ++.++|.. ...+.|||||++|+|+..+.+.. ..+||
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~--------~~~~~~SpDg~~la~~~~~~~~~----~~~l~ 88 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKN--NARRFIEN--------ATMPRISPDGKKIAFMRANEEKK----VSEIW 88 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTT--CCEEEEES--------CEEEEECTTSSEEEEEEEETTTT----EEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCC--CceEEccc--------CCCeEECCCCCEEEEEEeccCCC----cceEE
Confidence 77788887421 34899999998 77777721 26789999999999987654211 47899
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCC---------CCC----------CccEEEEEEecCCCc
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPN---------MPW----------DKAELWVGYISENGD 285 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~---------~~~----------~~~~l~v~d~~~~g~ 285 (732)
++++++++ .++++.... ...+.|||||++|+|.+.+... .++ ...+||++|++ +|+
T Consensus 89 ~~~~~~g~---~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~-~~~ 163 (347)
T 2gop_A 89 VADLETLS---SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE-SEE 163 (347)
T ss_dssp EEETTTTE---EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT-TTE
T ss_pred EEECCCCc---eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC-CCe
Confidence 99999988 788876555 7789999999999999743110 000 14679999998 776
Q ss_pred e-eeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC-----C-eeeEEEEeccCCeEEEecccccccCCCceeecccc
Q 004735 286 V-YKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN-----G-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINS 358 (732)
Q Consensus 286 ~-~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~-----g-~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~ 358 (732)
. +.+.. . . +..+.|+||| ++|.+.... . ..+||.++ +++.+.|+.. .... .+++
T Consensus 164 ~~~~l~~-~--~------~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~--~~sp---- 224 (347)
T 2gop_A 164 VIEEFEK-P--R------FSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFY--AVDS---- 224 (347)
T ss_dssp EEEEEEE-E--T------TCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEE--EEEE----
T ss_pred EEeeecC-C--C------cccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-ccee--eECC----
Confidence 5 43333 2 2 3578999999 888876522 1 56899998 7788877643 2211 1132
Q ss_pred eeeeeecCCCCEEEEEEEEC-----CEEEEEEEECCCCceEEeccC-CCceEE-eeEeCCEEEEEEeCCCCCcEEEEEEc
Q 004735 359 YEIIQSHGEKNLIACSYRQN-----GRSYLGILDDFGHSLSLLDIP-FTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTL 431 (732)
Q Consensus 359 ~~~~~~~~~~~~l~~~s~~~-----g~~~ly~~~~~~~~~~~lt~~-~~~v~~-~~~~~~~~~~~~~~~~~~~~ly~~dl 431 (732)
+|+.|++.+... ...+||+++ +++.++++.. ...+.. +...++ ++ +.++......|| ++
T Consensus 225 --------dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg-~~-~~~~~~~~~~l~-~~- 290 (347)
T 2gop_A 225 --------DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGK-VY-FTLFEEGSVNLY-IW- 290 (347)
T ss_dssp --------CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTE-EE-EEEEETTEEEEE-EE-
T ss_pred --------CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCc-EE-EEEecCCcEEEE-Ec-
Confidence 888888887543 246899998 6777888765 455654 422244 44 444445566788 88
Q ss_pred CCCcce
Q 004735 432 DDHKLK 437 (732)
Q Consensus 432 ~~~~~~ 437 (732)
+++.+
T Consensus 291 -~g~~~ 295 (347)
T 2gop_A 291 -DGEIK 295 (347)
T ss_dssp -SSSEE
T ss_pred -CCceE
Confidence 35543
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.5e-17 Score=171.59 Aligned_cols=226 Identities=16% Similarity=0.102 Sum_probs=150.6
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCE----EEEEcCC
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA----FVDVNYG 533 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~----v~~~d~r 533 (732)
..+.+.+++.+...|..+.+++|.|.+.. .+++|+|+++||+.+... .......+.|+++|+. |+.+|++
T Consensus 165 ~G~v~~~~~~S~~~g~~~~~~vy~P~~~~-----~~~~PvlvllHG~~~~~~-~~~~~~~~~l~~~g~~~p~iVV~~d~~ 238 (403)
T 3c8d_A 165 EIPAKEIIWKSERLKNSRRVWIFTTGDVT-----AEERPLAVLLDGEFWAQS-MPVWPVLTSLTHRQQLPPAVYVLIDAI 238 (403)
T ss_dssp SSCCEEEEEEETTTTEEEEEEEEEC----------CCCCEEEESSHHHHHHT-SCCHHHHHHHHHTTSSCSCEEEEECCC
T ss_pred CCceEEEEEEccccCCcEEEEEEeCCCCC-----CCCCCEEEEeCCHHHhhc-CcHHHHHHHHHHcCCCCCeEEEEECCC
Confidence 34567888887657889999999997621 467899999999643221 2234466778888864 9999997
Q ss_pred CCCCCChhhHHhhccCCCcccHHHH--HHHHHHHHhcCC--CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 534 GSTGYGREFRERLLGRWGIVDVNDC--CSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 534 G~~g~g~~~~~~~~~~~~~~~~~D~--~~~i~~l~~~~~--~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
|..+ +. .+ .. +.....+. .+++.++.++.. .|+++++|+|+||||++++.++. +|++|+++++.+|..
T Consensus 239 ~~~~--r~-~~--~~--~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~ 311 (403)
T 3c8d_A 239 DTTH--RA-HE--LP--CNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSY 311 (403)
T ss_dssp SHHH--HH-HH--SS--SCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCT
T ss_pred CCcc--cc-cc--CC--ChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEecccc
Confidence 5211 11 11 00 11122332 356677766543 47899999999999999999988 999999999999987
Q ss_pred CHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC
Q 004735 609 DLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 688 (732)
Q Consensus 609 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (732)
++....... ...+. +.+.. ........|++++||+.|..+ ..+++++++.|+++|+++++++++|
T Consensus 312 ~~~~~~~~~---~~~~~-------~~~~~----~~~~~~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~v~~~~~~G 376 (403)
T 3c8d_A 312 WWPHRGGQQ---EGVLL-------EKLKA----GEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG 376 (403)
T ss_dssp TTTCTTSSS---CCHHH-------HHHHT----TSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC
T ss_pred ccCCCCCCc---HHHHH-------HHHHh----ccccCCCceEEEEeeCCCchh-HHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 543210000 00000 01111 112345678999999998654 6789999999999999999999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 689 EQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 689 ~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+|.+ ......+...+.||.+.+.
T Consensus 377 -gH~~---~~w~~~l~~~l~~l~~~~~ 399 (403)
T 3c8d_A 377 -GHDA---LCWRGGLMQGLIDLWQPLF 399 (403)
T ss_dssp -CSCH---HHHHHHHHHHHHHHHGGGT
T ss_pred -CCCH---HHHHHHHHHHHHHHhcccc
Confidence 6974 2445666777788776554
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=169.99 Aligned_cols=227 Identities=18% Similarity=0.165 Sum_probs=140.5
Q ss_pred CcEEEEeecc-CCC--eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC---------CcccHHHHHHHHCCCEE
Q 004735 460 LPELIEFPTE-VPG--QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---------GILNLSIQYWTSRGWAF 527 (732)
Q Consensus 460 ~~~~i~~~~~-~~g--~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~---------~~~~~~~~~l~~~G~~v 527 (732)
...++.|.+. .+| ..+.++++.|.... +.++.|+||++||+++.... ..+...++.|+++||.|
T Consensus 45 ~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~----~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V 120 (397)
T 3h2g_A 45 RVAEFTYATIGVEGEPATASGVLLIPGGER----CSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVV 120 (397)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEECTT----CCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEE
T ss_pred EEEEEEEEecCCCCCeEEEEEEEEeCCCCC----CCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEE
Confidence 4456777664 124 35899999997632 24568999999998654332 22556788899999999
Q ss_pred EEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh--CC-----Ccce
Q 004735 528 VDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA--FR-----DTFK 599 (732)
Q Consensus 528 ~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~--~p-----~~~~ 599 (732)
+++|+||.++.+..............++.|...++..+.++ +..++++|+++|||+||++++.++. .+ -.+.
T Consensus 121 ~~~D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~ 200 (397)
T 3h2g_A 121 VGSDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLV 200 (397)
T ss_dssp EEECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEE
T ss_pred EEecCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceE
Confidence 99999988764321100000000012355566666666555 3334689999999999999988863 22 2678
Q ss_pred EEEeecCcCCHHHHHhhcc---------h-------h-----hhhh------------------hhhhcCC---------
Q 004735 600 AGASLYGVADLSMLRAETH---------K-------F-----ESRY------------------IDNLVGS--------- 631 (732)
Q Consensus 600 a~v~~~~~~d~~~~~~~~~---------~-------~-----~~~~------------------~~~~~~~--------- 631 (732)
+++..++..++........ . + ...+ +...+..
T Consensus 201 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (397)
T 3h2g_A 201 ASAPISGPYALEQTFLDSWSGSNAVGENTFGILLGSYAIVAMQHTYKNIYLEPGQVFQDPWAAKVEPLFPGKQSLTDMFL 280 (397)
T ss_dssp EEEEESCCSSHHHHHHHHTTSBCSSSBCTTHHHHHHHHHHHHHHHHCCSCSSGGGTBCTTHHHHSGGGTTBSSCHHHHHH
T ss_pred EEecccccccHHHHHHhhccccccccccchhhhHHHHHHHHHHHhCchhhcCHHHHhchhHHHHHHHhcCCCccchhhhc
Confidence 8888888888764321100 0 0 0000 0000000
Q ss_pred ---------------hhh---------------hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCC-
Q 004735 632 ---------------EKD---------------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP- 680 (732)
Q Consensus 632 ---------------~~~---------------~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~- 680 (732)
+.. ....+. ....+++|+|++||++|.+||+.++..+++.+++.|.+
T Consensus 281 ~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~~~~~~P~li~~g~~D~~vp~~~~~~~~~~~~~~g~~~ 358 (397)
T 3h2g_A 281 NDTLPSIDKVKSYFQPGFYSDFPSNPANPFRQDLARNNL--LEWAPQTPTLLCGSSNDATVPLKNAQTAIASFQQRGSNQ 358 (397)
T ss_dssp TTSSCCGGGHHHHBCHHHHHHHHHCTTCHHHHHHHHTCC--CSSCCCSCEEEEECTTBSSSCTHHHHHHHHHHHHTTCCC
T ss_pred cccCCCccchHhhcCHHHHHhhhhCCccHHHHHHHhcch--hccCCCCCEEEEEECCCCccCHHHHHHHHHHHHhcCCCc
Confidence 000 000000 02234789999999999999999999999999999887
Q ss_pred EEEEEeCCCCccC
Q 004735 681 VALVEYEGEQHGF 693 (732)
Q Consensus 681 ~~~~~~~~~gH~~ 693 (732)
+++.... .||..
T Consensus 359 v~l~~~~-~g~~~ 370 (397)
T 3h2g_A 359 VALVDTG-TGNAS 370 (397)
T ss_dssp EEEEECS-CSCGG
T ss_pred eEEEEcC-CCCCC
Confidence 6776654 35543
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-16 Score=156.63 Aligned_cols=215 Identities=12% Similarity=0.065 Sum_probs=135.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc-CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~-~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~ 549 (732)
+|.++++...- ..|.||++||.+.... ...|......| +.+|.|+++|+||.+...... .
T Consensus 13 ~g~~l~y~~~G------------~g~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~---~--- 73 (282)
T 1iup_A 13 AGVLTNYHDVG------------EGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFGFTDRPE---N--- 73 (282)
T ss_dssp TTEEEEEEEEC------------CSSEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCCT---T---
T ss_pred CCEEEEEEecC------------CCCeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCCCCCCCCCC---C---
Confidence 68888765431 1257999999633222 12344455556 678999999999765433210 0
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH----HH---HHhh-----
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----SM---LRAE----- 616 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~----~~---~~~~----- 616 (732)
....+++..+.+..++++. ..+++.|+|||+||.+++.++. +|++++++|++++.... .. ....
T Consensus 74 -~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (282)
T 1iup_A 74 -YNYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIE 150 (282)
T ss_dssp -CCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHH
T ss_pred -CCCCHHHHHHHHHHHHHHh--CCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcCCCcHH
Confidence 0123555555555555543 3468999999999999999998 99999999999875420 00 0000
Q ss_pred -cchh-----------hhhhhhhh---cCCh---hhhhh------------c-CccccCCCCCCCEEEEEeCCCCccChH
Q 004735 617 -THKF-----------ESRYIDNL---VGSE---KDYYE------------K-SPINFVDKFSCPIILFQGLEDKVVPPD 665 (732)
Q Consensus 617 -~~~~-----------~~~~~~~~---~~~~---~~~~~------------~-sp~~~~~~i~~P~Lii~G~~D~~v~~~ 665 (732)
...+ ...+.... ..++ ..+.. . .....+.++++|+|+++|++|..+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~ 230 (282)
T 1iup_A 151 NMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLS 230 (282)
T ss_dssp HHHHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHH
T ss_pred HHHHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCCEEEEecCCCCCCCHH
Confidence 0000 00000000 0000 00100 0 011356788999999999999999998
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 666 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
.++++.+.+. +.++++++++||.. ..+..+++.+.+.+|+++
T Consensus 231 ~~~~~~~~~~----~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 231 SSLRLGELID----RAQLHVFGRCGHWT-QIEQTDRFNRLVVEFFNE 272 (282)
T ss_dssp HHHHHHHHCT----TEEEEEESSCCSCH-HHHSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC----CCeEEEECCCCCCc-cccCHHHHHHHHHHHHhc
Confidence 8888877664 56999999999964 335667888888888875
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=160.90 Aligned_cols=203 Identities=12% Similarity=0.054 Sum_probs=129.4
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHH-CCCEEEEEcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHHHHHhcCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d 572 (732)
.|.||++||.+.. ...|......|++ +||.|+++|+||.+....... +.. ...+|+.+.++.+. +
T Consensus 21 ~~~vv~lhG~~~~--~~~~~~~~~~l~~~~g~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~~l~~~~-----~ 87 (272)
T 3fsg_A 21 GTPIIFLHGLSLD--KQSTCLFFEPLSNVGQYQRIYLDLPGMGNSDPISP------STSDNVLETLIEAIEEII-----G 87 (272)
T ss_dssp SSEEEEECCTTCC--HHHHHHHHTTSTTSTTSEEEEECCTTSTTCCCCSS------CSHHHHHHHHHHHHHHHH-----T
T ss_pred CCeEEEEeCCCCc--HHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCC------CCHHHHHHHHHHHHHHHh-----C
Confidence 3689999998433 3445555666666 799999999998665332211 110 11344444444421 3
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc-------------------------------chh
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-------------------------------HKF 620 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-------------------------------~~~ 620 (732)
.+++.|+|||+||.+++.++. +|++++++++++|........... ...
T Consensus 88 ~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
T 3fsg_A 88 ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQA 167 (272)
T ss_dssp TCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHHHHCSEESHHH
T ss_pred CCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHHHHhccCCCch
Confidence 478999999999999999998 999999999999875221100000 000
Q ss_pred hhhhhhhhc-----CChhhhh--------hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 621 ESRYIDNLV-----GSEKDYY--------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 621 ~~~~~~~~~-----~~~~~~~--------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
...+..... ....... ...+...+.++++|+|+++|++|.++|++...++.+.++ ++++++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~ 243 (272)
T 3fsg_A 168 WHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVVGYQEQLKLINHNE----NGEIVLLN 243 (272)
T ss_dssp HHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEEETTCTTTCSHHHHHHHTTCT----TEEEEEES
T ss_pred hHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEEeCCCCcCCHHHHHHHHHhcC----CCeEEEec
Confidence 000000000 0000000 011111357889999999999999999988877766543 57999999
Q ss_pred CCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 688 GEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 688 ~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++||.+.. +..+++.+.+.+||++..+
T Consensus 244 ~~gH~~~~-~~~~~~~~~i~~fl~~~~~ 270 (272)
T 3fsg_A 244 RTGHNLMI-DQREAVGFHFDLFLDELNS 270 (272)
T ss_dssp SCCSSHHH-HTHHHHHHHHHHHHHHHHC
T ss_pred CCCCCchh-cCHHHHHHHHHHHHHHhhc
Confidence 99997533 5667888899999988654
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-16 Score=157.58 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=126.3
Q ss_pred CEEEEEcCCC-CCccCCcccHHH-HHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 496 PLLVKSHGGP-TSEARGILNLSI-QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 496 P~vl~~HGg~-~~~~~~~~~~~~-~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
|.||++||.+ .......|.... ..|.+ +|.|+++|+||.+...... . .....++..+.+..+++.. +.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~-----~--~~~~~~~~~~~l~~~l~~l--~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVEA-GYRVILLDCPGWGKSDSVV-----N--SGSRSDLNARILKSVVDQL--DI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHHT-TCEEEEECCTTSTTSCCCC-----C--SSCHHHHHHHHHHHHHHHT--TC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHhc-CCeEEEEcCCCCCCCCCCC-----c--cccCHHHHHHHHHHHHHHh--CC
Confidence 4899999973 223333455455 56655 4999999999866543211 0 0234566666666665553 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC------------HHHHHhh----cchhhhhhhhhhc-------
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD------------LSMLRAE----THKFESRYIDNLV------- 629 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d------------~~~~~~~----~~~~~~~~~~~~~------- 629 (732)
+++.|+|||+||.+++.++. +|++++++|+.++... +..+... .......++....
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT 186 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCC
Confidence 68999999999999999988 9999999999887532 0000000 0000000000000
Q ss_pred ------------CChhhhh------------hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 630 ------------GSEKDYY------------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 630 ------------~~~~~~~------------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
..+..+. ..+....+.++++|+|+++|++|.++|++.++++.+.+. +.++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~ 262 (289)
T 1u2e_A 187 DALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIA----GSELHI 262 (289)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHST----TCEEEE
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCCeEEEeeCCCCccCHHHHHHHHhhCC----CcEEEE
Confidence 0111000 011223567789999999999999999998888877764 458999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++++||... .+..+++.+.+.+|+.
T Consensus 263 i~~~gH~~~-~e~p~~~~~~i~~fl~ 287 (289)
T 1u2e_A 263 FRDCGHWAQ-WEHADAFNQLVLNFLA 287 (289)
T ss_dssp ESSCCSCHH-HHTHHHHHHHHHHHHT
T ss_pred eCCCCCchh-hcCHHHHHHHHHHHhc
Confidence 999999643 2455667777777764
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-16 Score=158.87 Aligned_cols=221 Identities=16% Similarity=0.115 Sum_probs=137.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCC-CCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~-~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~ 549 (732)
+|.++++.... . .|.||++||++ .......|...+..|++. |.|+++|+||.+... . . .
T Consensus 24 ~g~~l~y~~~g-----------~-g~~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~Dl~G~G~S~-~---~-~-- 83 (296)
T 1j1i_A 24 GGVETRYLEAG-----------K-GQPVILIHGGGAGAESEGNWRNVIPILARH-YRVIAMDMLGFGKTA-K---P-D-- 83 (296)
T ss_dssp TTEEEEEEEEC-----------C-SSEEEEECCCSTTCCHHHHHTTTHHHHTTT-SEEEEECCTTSTTSC-C---C-S--
T ss_pred CCEEEEEEecC-----------C-CCeEEEECCCCCCcchHHHHHHHHHHHhhc-CEEEEECCCCCCCCC-C---C-C--
Confidence 78888755431 1 26799999973 223334455566667655 999999999765433 1 0 0
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-------HHHhhcc--h
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-------MLRAETH--K 619 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-------~~~~~~~--~ 619 (732)
.....++..+.+..+++...+ .+++.|+||||||.+++.++. +|++++++|+.++..... .+..... .
T Consensus 84 -~~~~~~~~~~dl~~~l~~l~~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (296)
T 1j1i_A 84 -IEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTRE 161 (296)
T ss_dssp -SCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHH
T ss_pred -CCCCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCch
Confidence 112345555555554444322 168999999999999999988 999999999998754110 0000000 0
Q ss_pred hhhhhhhhhcC------------------Ch---hhhh-----------hcCccccCCCCCCCEEEEEeCCCCccChHHH
Q 004735 620 FESRYIDNLVG------------------SE---KDYY-----------EKSPINFVDKFSCPIILFQGLEDKVVPPDQA 667 (732)
Q Consensus 620 ~~~~~~~~~~~------------------~~---~~~~-----------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (732)
.....+..... ++ ..+. .......+.++++|+|+++|++|.++|++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~~~~~~ 241 (296)
T 1j1i_A 162 GMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETA 241 (296)
T ss_dssp HHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEECCCcccCHHHH
Confidence 00000000000 00 0000 0111234678899999999999999999988
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCCC
Q 004735 668 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFD 718 (732)
Q Consensus 668 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~ 718 (732)
.++.+.+. +.++++++++||... .+..+++.+.+.+||.+.+...+
T Consensus 242 ~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~~~~~~ 287 (296)
T 1j1i_A 242 YKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSLRVDITP 287 (296)
T ss_dssp HHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHCC----CCEEEEECCCCCCch-hcCHHHHHHHHHHHHhccCCcCc
Confidence 88877654 568999999999643 35677888999999998876433
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-15 Score=172.94 Aligned_cols=263 Identities=11% Similarity=-0.005 Sum_probs=175.8
Q ss_pred eEEECCEEEEEeCCC----CeEEEEeCCCCCCCceecCCCCC---CCCeEeeceeecCCCCEEEEEEeccCCCCCCceeE
Q 004735 150 FRIFGDTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDYG---EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~----~~l~~~d~~~~~~~~~~lt~~~~---~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 222 (732)
..+++++++|..... ..||+++..+ ++.++|+.... ........++|||||++|+|.....+.+ ...
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~----~~~ 148 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGES--GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAAD----EAV 148 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTT--SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCS----CCE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCC--CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCc----eEE
Confidence 457888999887544 3689999876 77888875321 1134567889999999999998765433 269
Q ss_pred EEEEEcCCCCccccEEc-ccCCCceeccccCCCCCeEEEEeccCCCC-----CCCccEEEEEEecCCCceeeeEEecCCC
Q 004735 223 IVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNM-----PWDKAELWVGYISENGDVYKRVCVAGFD 296 (732)
Q Consensus 223 l~~~d~~~~~~~~~~~l-t~~~~~~~~p~~SPDG~~la~~~~~~~~~-----~~~~~~l~v~d~~~~g~~~~~~~~~~~~ 296 (732)
|+++|+++|+ ..+. .-.......++|||||+.|+|.+.+..+. .+...+||++++. ++......+....+
T Consensus 149 i~v~dl~tg~---~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~-t~~~~~~lv~~~~~ 224 (695)
T 2bkl_A 149 LHVIDVDSGE---WSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG-TEPSKDTVVHERTG 224 (695)
T ss_dssp EEEEETTTCC---BCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETT-SCGGGCEEEECCCC
T ss_pred EEEEECCCCC---CcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECC-CCchhceEEEecCC
Confidence 9999999987 4311 11111126799999999999998655310 0135679999998 66532233443322
Q ss_pred CCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEE
Q 004735 297 PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 375 (732)
Q Consensus 297 ~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s 375 (732)
.. .....+.|||||+ |++.+....+...||.++..+++.+.|+........+.|. +++ +++.+
T Consensus 225 ~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-------------~g~-l~~~s 288 (695)
T 2bkl_A 225 DP--TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAW-------------KDR-FYVLT 288 (695)
T ss_dssp CT--TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEE-------------TTE-EEEEE
T ss_pred CC--EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEec-------------CCc-EEEEE
Confidence 11 3456789999999 8888776226778999988788888887543222223331 677 88877
Q ss_pred EEC-CEEEEEEEECCCCc---eEEeccC--CCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 376 RQN-GRSYLGILDDFGHS---LSLLDIP--FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 376 ~~~-g~~~ly~~~~~~~~---~~~lt~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
+.+ +...|+++++++++ ++.|..+ ...+..+...++.+++... .+....|++++++++..+.|
T Consensus 289 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 289 DEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYL-KDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp CTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEE-ETTEEEEEEEETTCCEEEEC
T ss_pred CCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEE-ECCEEEEEEEeCCCCeeEEe
Confidence 654 45789999998876 3666654 3446666444666665554 45567899999876655444
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=161.39 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=85.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++....|.+ ...|.||++||++... ..|...+..|+++||.|+++|+||.+....... .
T Consensus 11 ~g~~l~y~~~G~~~--------~~~~~vv~~hG~~~~~--~~~~~~~~~l~~~g~~vi~~d~~g~g~s~~~~~------~ 74 (356)
T 2e3j_A 11 RGTRIHAVADSPPD--------QQGPLVVLLHGFPESW--YSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRV------Q 74 (356)
T ss_dssp TTEEEEEEEECCTT--------CCSCEEEEECCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCCCCS------G
T ss_pred CCeEEEEEEecCCC--------CCCCEEEEECCCCCcH--HHHHHHHHHHHHcCCEEEEEcCCCCCCCCCCCc------c
Confidence 78899988776642 2358899999985443 445667788889999999999998654322110 0
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
.....++..+.+..+++. ++.++++++|||+||.+++.++. +|++++++|++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 75 KAYRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp GGGSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred cccCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 012244444444444443 24568999999999999999988 999999999988654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-15 Score=171.49 Aligned_cols=264 Identities=9% Similarity=0.001 Sum_probs=173.8
Q ss_pred EEECCEEEEEeCCC----CeEEEEeCCCCCCCceecCCCC---CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 151 RIFGDTVIFSNYKD----QRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 151 ~~~~~~i~f~~~~~----~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
.+++++++|..... +.||+++..+ ++.+.|.... .........++|||||++|+|...+.+.. ..+|
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~----~~~i 153 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLE--GEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSD----WVTI 153 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTT--SCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCS----CEEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCC--CCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCc----eEEE
Confidence 47888998886543 2789999876 6666553321 01134567899999999999988765432 2699
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCC--------CCCCccEEEEEEecCCCceeeeEEecCC
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPN--------MPWDKAELWVGYISENGDVYKRVCVAGF 295 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~--------~~~~~~~l~v~d~~~~g~~~~~~~~~~~ 295 (732)
+++|+++|+ ..+++........+.|||||++|+|.+.+... ..+...+||++++. ++......+..+.
T Consensus 154 ~v~d~~tg~---~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~-t~~~~~~~v~~~~ 229 (710)
T 2xdw_A 154 KFMKVDGAK---ELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLG-TDQSEDILCAEFP 229 (710)
T ss_dssp EEEETTTTE---EEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETT-SCGGGCEEEECCT
T ss_pred EEEECCCCC---CCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECC-CCcccceEEeccC
Confidence 999999998 66544322224579999999999999865431 01234679999997 6653323343432
Q ss_pred CCCccccCcCceeCCCCc-EEEEEeccCC-eeeEEEEeccC------C--eEEEecccccccCCCceeecccceeeeeec
Q 004735 296 DPTIVESPTEPKWSSKGE-LFFVTDRKNG-FWNLHKWIESN------N--EVLAIYSLDAEFSRPLWVFGINSYEIIQSH 365 (732)
Q Consensus 296 ~~~~~~~~~~~~wspDg~-l~~~~~~~~g-~~~l~~~d~~~------g--~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~ 365 (732)
+.. .....+.|||||+ |++.+.+..+ ...||++|+++ + +.+.|+...... ...|++
T Consensus 230 ~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~----------- 295 (710)
T 2xdw_A 230 DEP--KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTN----------- 295 (710)
T ss_dssp TCT--TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEE-----------
T ss_pred CCC--eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEec-----------
Confidence 101 3345789999999 8887765222 57899999986 5 466676432211 122333
Q ss_pred CCCCEEEEEEEECC-EEEEEEEECCCCc---eEEeccCCC--ceEEee-EeCCEEEEEEeCCCCCcEEEEEEcCCCc-ce
Q 004735 366 GEKNLIACSYRQNG-RSYLGILDDFGHS---LSLLDIPFT--DIDNIT-LGNDCLFVEGASGVEPSSVAKVTLDDHK-LK 437 (732)
Q Consensus 366 ~~~~~l~~~s~~~g-~~~ly~~~~~~~~---~~~lt~~~~--~v~~~~-~~~~~~~~~~~~~~~~~~ly~~dl~~~~-~~ 437 (732)
+++.|++.++.++ ..+|++++++++. ++.|+.+.. .+..+. .+++.+++... .+....|+++++.+|+ .+
T Consensus 296 -dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~~ 373 (710)
T 2xdw_A 296 -EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALLK 373 (710)
T ss_dssp -ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEEE
T ss_pred -cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEEE
Confidence 7889999887654 5789999998874 466766533 465563 44666665554 4556679999986554 44
Q ss_pred eee
Q 004735 438 AVD 440 (732)
Q Consensus 438 ~lt 440 (732)
.|+
T Consensus 374 ~l~ 376 (710)
T 2xdw_A 374 IFP 376 (710)
T ss_dssp EEC
T ss_pred ecC
Confidence 444
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=156.06 Aligned_cols=226 Identities=10% Similarity=0.039 Sum_probs=134.5
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
.+...+.. +|.++++.... ..|.||++||.+.. ...|...+..|.+ ||.|+++|+||.+....
T Consensus 13 ~~~~~~~~--~g~~l~~~~~g------------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~v~~~D~~G~G~S~~ 75 (306)
T 3r40_A 13 FGSEWINT--SSGRIFARVGG------------DGPPLLLLHGFPQT--HVMWHRVAPKLAE-RFKVIVADLPGYGWSDM 75 (306)
T ss_dssp CEEEEECC--TTCCEEEEEEE------------CSSEEEEECCTTCC--GGGGGGTHHHHHT-TSEEEEECCTTSTTSCC
T ss_pred CceEEEEe--CCEEEEEEEcC------------CCCeEEEECCCCCC--HHHHHHHHHHhcc-CCeEEEeCCCCCCCCCC
Confidence 34444444 68888866542 23789999998544 3456667777877 99999999998765432
Q ss_pred hhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc--
Q 004735 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-- 617 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-- 617 (732)
... .........++..+.+..+++.. +.+++.|+|||+||.+++.++. +|++++++|++++...........
T Consensus 76 ~~~---~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 150 (306)
T 3r40_A 76 PES---DEQHTPYTKRAMAKQLIEAMEQL--GHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEYWQRMNRA 150 (306)
T ss_dssp CCC---CTTCGGGSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHHHHHCSHH
T ss_pred CCC---CcccCCCCHHHHHHHHHHHHHHh--CCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccchhhhhhh
Confidence 211 00001233566666666555552 3468999999999999999988 999999999999754322111000
Q ss_pred --------------------------chhhhhhhhhhcC-------Chh---hh-----------------hhc------
Q 004735 618 --------------------------HKFESRYIDNLVG-------SEK---DY-----------------YEK------ 638 (732)
Q Consensus 618 --------------------------~~~~~~~~~~~~~-------~~~---~~-----------------~~~------ 638 (732)
..+...++..... .++ .+ ...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (306)
T 3r40_A 151 YALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRAGAYADFE 230 (306)
T ss_dssp HHHHSTHHHHHTSCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhhHHHHHhhcccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHhcccccch
Confidence 0000000000000 000 00 000
Q ss_pred ---CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 639 ---SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 639 ---sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
.....+.++++|+|+++|++|.+++.....+.++.+. .+.+++++ ++||.+ ..+..+++.+.+.+||++.
T Consensus 231 ~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~-~~gH~~-~~e~p~~~~~~i~~fl~~~ 303 (306)
T 3r40_A 231 HDKIDVEAGNKIPVPMLALWGASGIAQSAATPLDVWRKWA---SDVQGAPI-ESGHFL-PEEAPDQTAEALVRFFSAA 303 (306)
T ss_dssp HHHHHHHHTCCBCSCEEEEEETTCC------CHHHHHHHB---SSEEEEEE-SSCSCH-HHHSHHHHHHHHHHHHHC-
T ss_pred hhhhhhhhccCCCcceEEEEecCCcccCchhHHHHHHhhc---CCCeEEEe-cCCcCc-hhhChHHHHHHHHHHHHhc
Confidence 0001358899999999999999998555555444443 36688888 679964 3456677888888888754
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=157.48 Aligned_cols=223 Identities=15% Similarity=0.097 Sum_probs=132.5
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+...+... +|.++++....+. ..|.||++||++....... ....+...||.|+++|+||.|.....
T Consensus 15 ~~~~~~~~-~g~~l~~~~~g~~----------~g~~vvllHG~~~~~~~~~---~~~~~~~~~~~vi~~D~~G~G~S~~~ 80 (317)
T 1wm1_A 15 DSGWLDTG-DGHRIYWELSGNP----------NGKPAVFIHGGPGGGISPH---HRQLFDPERYKVLLFDQRGCGRSRPH 80 (317)
T ss_dssp EEEEEECS-SSCEEEEEEEECT----------TSEEEEEECCTTTCCCCGG---GGGGSCTTTEEEEEECCTTSTTCBST
T ss_pred eeeEEEcC-CCcEEEEEEcCCC----------CCCcEEEECCCCCcccchh---hhhhccccCCeEEEECCCCCCCCCCC
Confidence 44456665 7888876554331 1256899999865432211 12334457999999999986544211
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH--------
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-------- 612 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~-------- 612 (732)
. .......+++.+.+..+++.. +.+++.|+||||||.+++.++. +|++++++|+.++......
T Consensus 81 ---~---~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 152 (317)
T 1wm1_A 81 ---A---SLDNNTTWHLVADIERLREMA--GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQD 152 (317)
T ss_dssp ---T---CCTTCSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTS
T ss_pred ---c---ccccccHHHHHHHHHHHHHHc--CCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCCCchhhhhHHhhc
Confidence 0 011123555666566665553 3468999999999999999988 9999999999876432110
Q ss_pred ------------HHhhcc-----hhhhhhhhhhcC-------------------------Chh-------h---------
Q 004735 613 ------------LRAETH-----KFESRYIDNLVG-------------------------SEK-------D--------- 634 (732)
Q Consensus 613 ------------~~~~~~-----~~~~~~~~~~~~-------------------------~~~-------~--------- 634 (732)
+..... .....+...+.. ++. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (317)
T 1wm1_A 153 GASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFARIE 232 (317)
T ss_dssp SGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHHHH
T ss_pred cchhhcHHHHHHHHhhccchhhcchHHHHHhhhcCCCccccccccccccccccchhhccCCcccccccccchhhhHHHhh
Confidence 000000 000000000000 000 0
Q ss_pred --------hhhcC--ccccCCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHH
Q 004735 635 --------YYEKS--PINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTL 703 (732)
Q Consensus 635 --------~~~~s--p~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~ 703 (732)
+.... ....+.+++ +|+|+++|++|.++|+..+..+.+.+. +.++++++++||....++...++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~G~~D~~~~~~~~~~l~~~~p----~~~~~~i~~~gH~~~~~~~~~~~~ 308 (317)
T 1wm1_A 233 NHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWP----EAELHIVEGAGHSYDEPGILHQLM 308 (317)
T ss_dssp HHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHCT----TSEEEEETTCCSSTTSHHHHHHHH
T ss_pred hhhhhcccccccchhhHhhcccccCCCEEEEEecCCCCCCHHHHHHHHhhCC----CceEEEECCCCCCCCCcchHHHHH
Confidence 00000 122345564 999999999999999998888877764 458999999999764433444555
Q ss_pred HHHHHHH
Q 004735 704 EQQMVFF 710 (732)
Q Consensus 704 ~~~~~fl 710 (732)
+.+.+|+
T Consensus 309 ~~i~~f~ 315 (317)
T 1wm1_A 309 IATDRFA 315 (317)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555554
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=8e-16 Score=152.44 Aligned_cols=193 Identities=15% Similarity=0.182 Sum_probs=124.5
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHH------h
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV------G 567 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~------~ 567 (732)
+.|+||++||.+.... .|. ....|+ +||.|+++|+||.+..... .....++..+.+..++ +
T Consensus 15 ~~~~vv~~hG~~~~~~--~~~-~~~~l~-~g~~v~~~d~~g~g~s~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 81 (245)
T 3e0x_A 15 SPNTLLFVHGSGCNLK--IFG-ELEKYL-EDYNCILLDLKGHGESKGQ---------CPSTVYGYIDNVANFITNSEVTK 81 (245)
T ss_dssp CSCEEEEECCTTCCGG--GGT-TGGGGC-TTSEEEEECCTTSTTCCSC---------CCSSHHHHHHHHHHHHHHCTTTT
T ss_pred CCCEEEEEeCCcccHH--HHH-HHHHHH-hCCEEEEecCCCCCCCCCC---------CCcCHHHHHHHHHHHHHhhhhHh
Confidence 4689999999855443 344 444454 8999999999986654311 1123555555555555 4
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHHH----Hhhcc------------------hhhhh
Q 004735 568 SGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSML----RAETH------------------KFESR 623 (732)
Q Consensus 568 ~~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~~----~~~~~------------------~~~~~ 623 (732)
. .. +++++|||+||.+++.++. +|+ ++++++.+|....... ..... .....
T Consensus 82 ~--~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (245)
T 3e0x_A 82 H--QK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEK 156 (245)
T ss_dssp T--CS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHHHH
T ss_pred h--cC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHHHH
Confidence 3 22 9999999999999998876 578 9999999987654111 00000 00000
Q ss_pred hhhhhcCChh-------hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc
Q 004735 624 YIDNLVGSEK-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 696 (732)
Q Consensus 624 ~~~~~~~~~~-------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 696 (732)
+......++. .....+....+.++++|+|+++|++|.+++++...++.+.++ ++++++++++||.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~- 231 (245)
T 3e0x_A 157 YFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVE----NSELKIFETGKHFLLV- 231 (245)
T ss_dssp HHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEESSCGGGHHH-
T ss_pred HHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCCHHHHHHHHHHcC----CceEEEeCCCCcceEE-
Confidence 0000011111 112234445577889999999999999999998888877764 5799999999997532
Q ss_pred ccHHHHHHHHHHH
Q 004735 697 ENIKFTLEQQMVF 709 (732)
Q Consensus 697 ~~~~~~~~~~~~f 709 (732)
+..+++.+.+.+|
T Consensus 232 ~~~~~~~~~i~~f 244 (245)
T 3e0x_A 232 VNAKGVAEEIKNF 244 (245)
T ss_dssp HTHHHHHHHHHTT
T ss_pred ecHHHHHHHHHhh
Confidence 3445555555555
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-15 Score=149.96 Aligned_cols=239 Identities=14% Similarity=0.169 Sum_probs=168.5
Q ss_pred CceeEEECCEEEEEeCC-CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCC-CC----Cce
Q 004735 147 GGAFRIFGDTVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-AL----NST 220 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~-~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~-~~----~~~ 220 (732)
++-++.+++.|+|++.. .+.||+++.++ ..+++|+.. . .--++++|++|+|+..+.... .. ...
T Consensus 18 ~g~~~~~g~~iy~~n~~d~~~ly~~~~dg--~~~~~l~~~----~----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~ 87 (302)
T 3s25_A 18 AGLFCESDGEVFFSNTNDNGRLYAMNIDG--SNIHKLSND----T----AMYINADKNYVYYVRNNNQKITSQTFFSYDR 87 (302)
T ss_dssp TTCEEEETTEEEEEEGGGTTEEEEEETTS--CSCEEEEEE----E----EEEEEECSSEEEEEEECC------CCSSCCS
T ss_pred ceEEEEeCCEEEEEeCCCCceEEEEcCCC--CCCEEccCC----c----eeeEEEcCCEEEEEECCCCcccccceeccCC
Confidence 34577889999999854 45899999997 788999865 1 123789999999997654210 00 014
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
..||++++++++ .++|+.... ..|||+|++|+|...... ....||+++++ +... +.+....
T Consensus 88 ~~Iy~i~~dg~~---~~~l~~~~~----~~~s~~g~~Iy~~~~~~~----~~~~Iy~~~~d-Gs~~---~~lt~~~---- 148 (302)
T 3s25_A 88 NSLCRIKRNGHG---STVLDPDPC----IYASLIGNYIYYLHYDTQ----TATSLYRIRID-GEEK---KKIKNHY---- 148 (302)
T ss_dssp EEEEEEETTSCC---CEEEECSCE----EEEEEETTEEEEEEESSS----SCEEEEEEETT-SCCC---EEEESSC----
T ss_pred CeEEEEeCCCCc---ceEeecCCc----cEEEEeCCEEEEEeecCC----CCceEEEEECC-CCCe---EEEeCCC----
Confidence 799999999988 788876543 268999999999873222 35679999998 3332 3333332
Q ss_pred ccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
. +.++++|+ |||+.. +..+|++++++++..++|..+.. ..|. .| +++.|||+...++
T Consensus 149 ~----~~~~~~g~~iy~t~~---g~~~Iy~~~l~g~~~~~l~~~~~--~~~~-~P------------~g~~iy~t~~~~~ 206 (302)
T 3s25_A 149 L----FTCNTSDRYFYYNNP---KNGQLYRYDTASQSEALFYDCNC--YKPV-VL------------DDTNVYYMDVNRD 206 (302)
T ss_dssp C----CCSEEETTEEEEECT---TTCCEEEEETTTTEEEEEECSCE--EEEE-EE------------ETTEEEEEEGGGT
T ss_pred c----eEeeEECCEEEEEeC---CCceEEEEECCCCCEEEEeCCCc--ccee-ee------------cCCEEEEEEcCCC
Confidence 1 34678898 998854 56689999999988888864321 1121 12 7889999876555
Q ss_pred EEEEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeee
Q 004735 380 RSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDF 441 (732)
Q Consensus 380 ~~~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~ 441 (732)
.+|++++++++..+.|+... +..+...++.+++..... ...|+++++++...++|++
T Consensus 207 -~~I~~~~ldG~~~~~Lt~~~--~~~~~~~g~~Iy~~~~~~--~~~i~~~~~DG~~r~~l~~ 263 (302)
T 3s25_A 207 -NAIVHVNINNPNPVVLTEAN--IEHYNVYGSLIFYQRGGD--NPALCVVKNDGTGFKELAK 263 (302)
T ss_dssp -TEEEEECSSSCCCEECSCSC--EEEEEEETTEEEEEECSS--SCEEEEEETTSCCCEEEEE
T ss_pred -cEEEEEECCCCCeEEEeCCC--cceEEECCCEEEEEECCC--CcEEEEEECCCCccEEeeC
Confidence 78999999999999998643 334566777775543332 2789999999988776653
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=155.88 Aligned_cols=216 Identities=15% Similarity=0.094 Sum_probs=133.9
Q ss_pred CC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCC-CCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhcc
Q 004735 471 PG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 548 (732)
Q Consensus 471 ~g-~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg-~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~ 548 (732)
+| .++++...-+ ++.|.||++||. |+......|...+..|++. |.|+++|+||.+.+.... .
T Consensus 21 ~g~~~l~y~~~G~----------g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~~-----~ 84 (291)
T 2wue_A 21 DGPLKLHYHEAGV----------GNDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPGYGHSDKRA-----E 84 (291)
T ss_dssp SSEEEEEEEEECT----------TCSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTTSTTSCCCS-----C
T ss_pred CCcEEEEEEecCC----------CCCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCCCCCCCCCC-----C
Confidence 68 8887655421 123689999997 3223334455566777665 999999999866543210 0
Q ss_pred CCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH---------HH---HHh
Q 004735 549 RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---------SM---LRA 615 (732)
Q Consensus 549 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~---------~~---~~~ 615 (732)
....+++..+.+..++++. +.+++.|+|||+||.+++.++. +|++++++|++++.... .. +..
T Consensus 85 --~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 160 (291)
T 2wue_A 85 --HGQFNRYAAMALKGLFDQL--GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSK 160 (291)
T ss_dssp --CSSHHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHH
T ss_pred --CCcCHHHHHHHHHHHHHHh--CCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHH
Confidence 0123455554444444432 2468999999999999999988 99999999999875310 00 000
Q ss_pred h---c-chhhhhhhhhhc------------------CChhhh----h---h-cC-----cc--ccCCCCCCCEEEEEeCC
Q 004735 616 E---T-HKFESRYIDNLV------------------GSEKDY----Y---E-KS-----PI--NFVDKFSCPIILFQGLE 658 (732)
Q Consensus 616 ~---~-~~~~~~~~~~~~------------------~~~~~~----~---~-~s-----p~--~~~~~i~~P~Lii~G~~ 658 (732)
. . ......++.... .++..+ . . .+ .. ..+.++++|+|+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 240 (291)
T 2wue_A 161 FSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGRE 240 (291)
T ss_dssp HHHSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGCCSCEEEEEETT
T ss_pred HhccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhCCCCeEEEecCC
Confidence 0 0 000000000000 011100 0 0 00 11 35667899999999999
Q ss_pred CCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 659 DKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 659 D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
|.++|+..++++.+.+. +.++++++++||... .+..+++.+.+.+||+
T Consensus 241 D~~~~~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (291)
T 2wue_A 241 DRVNPLDGALVALKTIP----RAQLHVFGQCGHWVQ-VEKFDEFNKLTIEFLG 288 (291)
T ss_dssp CSSSCGGGGHHHHHHST----TEEEEEESSCCSCHH-HHTHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHCC----CCeEEEeCCCCCChh-hhCHHHHHHHHHHHHh
Confidence 99999988887776654 569999999999643 3456677777777764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-14 Score=147.74 Aligned_cols=230 Identities=13% Similarity=0.143 Sum_probs=154.1
Q ss_pred eeEEE--CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 149 AFRIF--GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 149 ~~~~~--~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+..++ +..+++.. ++.|+++|+++. ++.+++.... .......+.|||||++|++....... ...||.+
T Consensus 46 ~~~~spdg~~l~~~~--~~~i~~~d~~~~-~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~-----~~~l~~~ 115 (297)
T 2ojh_A 46 APNWSPDGKYLLLNS--EGLLYRLSLAGD-PSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEFG-----KSAIYLL 115 (297)
T ss_dssp EEEECTTSSEEEEEE--TTEEEEEESSSC-CSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTTS-----SCEEEEE
T ss_pred eeEECCCCCEEEEEc--CCeEEEEeCCCC-CCceEecccc--ccccccceEECCCCCEEEEEEeCCCC-----cceEEEE
Confidence 34444 44666664 668999999751 2445555331 12345778999999998888743321 3799999
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
++.+++ .+.+..... ...+.|||||++|+|..... ...+||.+++. +++. ..+.... ..+..+
T Consensus 116 ~~~~~~---~~~~~~~~~-~~~~~~spdg~~l~~~~~~~-----~~~~l~~~~~~-~~~~---~~~~~~~----~~~~~~ 178 (297)
T 2ojh_A 116 PSTGGT---PRLMTKNLP-SYWHGWSPDGKSFTYCGIRD-----QVFDIYSMDID-SGVE---TRLTHGE----GRNDGP 178 (297)
T ss_dssp ETTCCC---CEECCSSSS-EEEEEECTTSSEEEEEEEET-----TEEEEEEEETT-TCCE---EECCCSS----SCEEEE
T ss_pred ECCCCc---eEEeecCCC-ccceEECCCCCEEEEEECCC-----CceEEEEEECC-CCcc---eEcccCC----Cccccc
Confidence 999887 777765544 56689999999999877433 23468888776 5554 2333332 456789
Q ss_pred eeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC-------
Q 004735 307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------- 378 (732)
Q Consensus 307 ~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~------- 378 (732)
.|+|||+ +++.+.. .+..+||.++..+++.+.+.........+.|++ +++.|++.+...
T Consensus 179 ~~s~dg~~l~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~------------dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 179 DYSPDGRWIYFNSSR-TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP------------SGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp EECTTSSEEEEEECT-TSSCEEEEEETTSSCEEECCCCSEEEEEEEECT------------TSSEEEEEEEETTCCSCCS
T ss_pred eECCCCCEEEEEecC-CCCccEEEECCCCCCcEEEecCCcccCCeEECC------------CCCEEEEEEcCCCCCcccc
Confidence 9999999 7777765 677899999988888887765443334455554 888888888765
Q ss_pred -CEEEEEEEECCCCceEEecc---CCCceEEe--eEeCCEEEEEEe
Q 004735 379 -GRSYLGILDDFGHSLSLLDI---PFTDIDNI--TLGNDCLFVEGA 418 (732)
Q Consensus 379 -g~~~ly~~~~~~~~~~~lt~---~~~~v~~~--~~~~~~~~~~~~ 418 (732)
+...||++++++++.+.+.. ....+..+ +.+++.+++...
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 34789999999988766653 23344444 334444444433
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-16 Score=157.38 Aligned_cols=206 Identities=12% Similarity=0.068 Sum_probs=127.9
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.. ...|...+..|++ +|.|+++|+||.+.+....... . ....+++..+.+..+++.. +.+
T Consensus 20 ~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~~--~--~~~~~~~~a~dl~~~l~~l--~~~ 90 (271)
T 1wom_A 20 KASIMFAPGFGCD--QSVWNAVAPAFEE-DHRVILFDYVGSGHSDLRAYDL--N--RYQTLDGYAQDVLDVCEAL--DLK 90 (271)
T ss_dssp SSEEEEECCTTCC--GGGGTTTGGGGTT-TSEEEECCCSCCSSSCCTTCCT--T--GGGSHHHHHHHHHHHHHHT--TCS
T ss_pred CCcEEEEcCCCCc--hhhHHHHHHHHHh-cCeEEEECCCCCCCCCCCcccc--c--ccccHHHHHHHHHHHHHHc--CCC
Confidence 3789999997443 3445555666655 7999999999876543211000 0 0112344444443344332 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH----------------HHHHhh----cchhhhhhhhhhcC---
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----------------SMLRAE----THKFESRYIDNLVG--- 630 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~----------------~~~~~~----~~~~~~~~~~~~~~--- 630 (732)
++.++||||||.+++.++. +|++++++|++++.... ..+... ...+...+.....+
T Consensus 91 ~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (271)
T 1wom_A 91 ETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPD 170 (271)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCTT
T ss_pred CeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 8999999999999999988 99999999998764210 000000 00000000000000
Q ss_pred ---------------Chhhh-------hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC
Q 004735 631 ---------------SEKDY-------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 688 (732)
Q Consensus 631 ---------------~~~~~-------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (732)
++... ...+....+.++++|+|+++|++|.++|+..++.+.+.+. +.+++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~ 246 (271)
T 1wom_A 171 RPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLP----YSSLKQMEA 246 (271)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSCHHHHHHHHHHSS----SEEEEEEEE
T ss_pred chHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCCHHHHHHHHHHCC----CCEEEEeCC
Confidence 01000 0011223457889999999999999999988877776654 469999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 689 EQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 689 ~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+||.. ..+..+++.+.+.+|+++++
T Consensus 247 ~gH~~-~~e~p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 247 RGHCP-HMSHPDETIQLIGDYLKAHV 271 (271)
T ss_dssp ESSCH-HHHCHHHHHHHHHHHHHHHC
T ss_pred CCcCc-cccCHHHHHHHHHHHHHhcC
Confidence 99964 33567788899999998753
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=156.41 Aligned_cols=215 Identities=13% Similarity=0.092 Sum_probs=136.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+.+. ..|.||++||++... ..|......|+ +||.|+++|+||.+......
T Consensus 18 ~g~~l~~~~~g~~----------~~~~vl~lHG~~~~~--~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~-------- 76 (299)
T 3g9x_A 18 LGERMHYVDVGPR----------DGTPVLFLHGNPTSS--YLWRNIIPHVA-PSHRCIAPDLIGMGKSDKPD-------- 76 (299)
T ss_dssp TTEEEEEEEESCS----------SSCCEEEECCTTCCG--GGGTTTHHHHT-TTSCEEEECCTTSTTSCCCC--------
T ss_pred CCeEEEEEecCCC----------CCCEEEEECCCCccH--HHHHHHHHHHc-cCCEEEeeCCCCCCCCCCCC--------
Confidence 6888887766442 246799999985443 44555666664 69999999999866533211
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh---hc---------
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA---ET--------- 617 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~---~~--------- 617 (732)
.....++..+.+..+++.. +.++++|+|||+||.+++.++. +|++++++|++++......... ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T 3g9x_A 77 LDYFFDDHVRYLDAFIEAL--GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRT 154 (299)
T ss_dssp CCCCHHHHHHHHHHHHHHT--TCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCGGGHHHHHHHTS
T ss_pred CcccHHHHHHHHHHHHHHh--CCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcchHHHHHHHHHcC
Confidence 1234666666666666653 4468999999999999999998 9999999999985433220000 00
Q ss_pred -----------chhhhhhhhhhcC----------------Ch-------hhhhhc--------------CccccCCCCCC
Q 004735 618 -----------HKFESRYIDNLVG----------------SE-------KDYYEK--------------SPINFVDKFSC 649 (732)
Q Consensus 618 -----------~~~~~~~~~~~~~----------------~~-------~~~~~~--------------sp~~~~~~i~~ 649 (732)
..+...+...... .+ ..+... +....+.++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 234 (299)
T 3g9x_A 155 ADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPV 234 (299)
T ss_dssp SSHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCS
T ss_pred CCcchhhhccchhhHHHhhhhhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhhhhhhhcccCCC
Confidence 0000000000000 00 000000 00112466789
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
|+|+++|++|.+++++.+.++.+.+. ++++++++++||.+. .+..+++.+.+.+++.+.
T Consensus 235 P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~~~~~~ 293 (299)
T 3g9x_A 235 PKLLFWGTPGVLIPPAEAARLAESLP----NCKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPAL 293 (299)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHST----TEEEEEEEEESSCHH-HHCHHHHHHHHHHHSGGG
T ss_pred CeEEEecCCCCCCCHHHHHHHHhhCC----CCeEEEeCCCCCcch-hcCHHHHHHHHHHHHhhh
Confidence 99999999999999998888887764 578999999999643 345556666666655443
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=153.57 Aligned_cols=125 Identities=14% Similarity=0.021 Sum_probs=82.3
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+...+... +|.++++..+-+. ..|.||++||++....... ....+...||.|+++|+||.|.+...
T Consensus 12 ~~~~~~~~-~g~~l~y~~~G~~----------~g~pvvllHG~~~~~~~~~---~~~~~~~~~~~vi~~D~~G~G~S~~~ 77 (313)
T 1azw_A 12 QQGSLKVD-DRHTLYFEQCGNP----------HGKPVVMLHGGPGGGCNDK---MRRFHDPAKYRIVLFDQRGSGRSTPH 77 (313)
T ss_dssp EEEEEECS-SSCEEEEEEEECT----------TSEEEEEECSTTTTCCCGG---GGGGSCTTTEEEEEECCTTSTTSBST
T ss_pred ccceEEcC-CCCEEEEEecCCC----------CCCeEEEECCCCCccccHH---HHHhcCcCcceEEEECCCCCcCCCCC
Confidence 44556665 7888876555331 1256899999865432211 12334457999999999976554211
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
. .......+++.+.+..+++.. ..+++.|+||||||.+++.++. +|++++++|+.++..
T Consensus 78 ---~---~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~~ 137 (313)
T 1azw_A 78 ---A---DLVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp ---T---CCTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred ---c---ccccccHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhChhheeEEEEecccc
Confidence 0 011123555555555555553 3458999999999999999998 999999999987653
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-16 Score=154.15 Aligned_cols=198 Identities=14% Similarity=0.099 Sum_probs=123.7
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHHHHHhcCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d~ 573 (732)
.|.||++||.+.+ ...|...+..|++. |.|+++|+||.+..... . .+.. ...+|+.+.++.+ ..
T Consensus 16 ~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~---~---~~~~~~~a~dl~~~l~~l------~~ 80 (255)
T 3bf7_A 16 NSPIVLVHGLFGS--LDNLGVLARDLVND-HNIIQVDVRNHGLSPRE---P---VMNYPAMAQDLVDTLDAL------QI 80 (255)
T ss_dssp CCCEEEECCTTCC--TTTTHHHHHHHTTT-SCEEEECCTTSTTSCCC---S---CCCHHHHHHHHHHHHHHH------TC
T ss_pred CCCEEEEcCCccc--HhHHHHHHHHHHhh-CcEEEecCCCCCCCCCC---C---CcCHHHHHHHHHHHHHHc------CC
Confidence 4679999998544 35567777777665 99999999986554321 0 1110 1134444444443 23
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc--C-C---HHHHHhhcc----------hhhhhhhhhhcCCh----
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV--A-D---LSMLRAETH----------KFESRYIDNLVGSE---- 632 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~--~-d---~~~~~~~~~----------~~~~~~~~~~~~~~---- 632 (732)
+++.|+||||||.+++.++. +|++++++|+.++. . . ......... ......+.....+.
T Consensus 81 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (255)
T 3bf7_A 81 DKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ 160 (255)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHHH
T ss_pred CCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHHH
Confidence 68999999999999999988 99999999987532 1 1 111000000 00000010011000
Q ss_pred ---------------hh----hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 633 ---------------KD----YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 633 ---------------~~----~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
.. +........+.++++|+|+++|++|..+++..++.+.+.+. +.++++++++||.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~ 236 (255)
T 3bf7_A 161 FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFP----QARAHVIAGAGHWV 236 (255)
T ss_dssp HHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTCGGGHHHHHHHCT----TEEECCBTTCCSCH
T ss_pred HHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCCHHHHHHHHHHCC----CCeEEEeCCCCCcc
Confidence 00 00000012256789999999999999999888777766543 57999999999965
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 004735 694 RKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 694 ~~~~~~~~~~~~~~~fl~~ 712 (732)
..+..+.+.+.+.+|+++
T Consensus 237 -~~e~p~~~~~~i~~fl~~ 254 (255)
T 3bf7_A 237 -HAEKPDAVLRAIRRYLND 254 (255)
T ss_dssp -HHHCHHHHHHHHHHHHHT
T ss_pred -ccCCHHHHHHHHHHHHhc
Confidence 335567888888888865
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-15 Score=149.73 Aligned_cols=206 Identities=13% Similarity=0.059 Sum_probs=131.6
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.+ ...|...+..|++.||.|+++|+||.+...... . ....+++..+.+..+++... ..+
T Consensus 4 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~rVia~Dl~G~G~S~~~~----~---~~~~~~~~a~dl~~~l~~l~-~~~ 73 (273)
T 1xkl_A 4 GKHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAASGTDLRKI----E---ELRTLYDYTLPLMELMESLS-ADE 73 (273)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTTSTTCCCCG----G---GCCSHHHHHHHHHHHHHTSC-SSS
T ss_pred CCeEEEECCCCCC--cchHHHHHHHHHhCCCEEEEecCCCCCCCccCc----c---cccCHHHHHHHHHHHHHHhc-cCC
Confidence 3789999998533 345677888898999999999999876543211 0 11235566655555555522 136
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC-----H----HHHHhhcch--h--------------------hh
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD-----L----SMLRAETHK--F--------------------ES 622 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d-----~----~~~~~~~~~--~--------------------~~ 622 (732)
++.|+||||||.+++.++. +|++++++|++++... . ..+...... + ..
T Consensus 74 ~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (273)
T 1xkl_A 74 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGP 153 (273)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCH
T ss_pred CEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccCH
Confidence 8999999999999999988 9999999999886421 0 011100000 0 00
Q ss_pred hhhhhhc-C--Chh--hhh----hc-----------CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEE
Q 004735 623 RYIDNLV-G--SEK--DYY----EK-----------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 682 (732)
Q Consensus 623 ~~~~~~~-~--~~~--~~~----~~-----------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (732)
.+....+ . ..+ .+. .. ..+......++|+|+++|++|.++|+..++.+.+.+. +.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~p----~~~ 229 (273)
T 1xkl_A 154 KFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIG----VTE 229 (273)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHC----CSE
T ss_pred HHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCCHHHHHHHHHhCC----CCe
Confidence 0000000 0 000 000 00 0000001136899999999999999998888888774 348
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 683 LVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 683 ~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+++++++||.. ..+..+++.+.+.+|+++...
T Consensus 230 ~~~i~~aGH~~-~~e~P~~~~~~i~~fl~~~~~ 261 (273)
T 1xkl_A 230 AIEIKGADHMA-MLCEPQKLCASLLEIAHKYNM 261 (273)
T ss_dssp EEEETTCCSCH-HHHSHHHHHHHHHHHHHHCC-
T ss_pred EEEeCCCCCCc-hhcCHHHHHHHHHHHHHHhcc
Confidence 99999999964 346677888999999987665
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-15 Score=150.38 Aligned_cols=204 Identities=13% Similarity=0.078 Sum_probs=126.6
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
+..|.||++||.+. ....|...+..|+++||.|+++|+||.|...... . ....+++..+.+..++++.. .
T Consensus 8 ~~g~~vvllHG~~~--~~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~----~---~~~~~~~~a~dl~~~l~~l~-~ 77 (264)
T 2wfl_A 8 KQQKHFVLVHGGCL--GAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRL----D---EIHTFRDYSEPLMEVMASIP-P 77 (264)
T ss_dssp -CCCEEEEECCTTC--CGGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG----G---GCCSHHHHHHHHHHHHHHSC-T
T ss_pred CCCCeEEEECCCcc--ccchHHHHHHHHHhCCCEEEEeecCCCCCCCCCc----c---cccCHHHHHHHHHHHHHHhC-C
Confidence 34578999999853 3345777888898999999999999876543211 0 01234555444444444321 1
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC-----H----HHHHhhcc--hh--------------------
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD-----L----SMLRAETH--KF-------------------- 620 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d-----~----~~~~~~~~--~~-------------------- 620 (732)
.+++.|+||||||.+++.++. +|++++++|++++... . ..+..... .+
T Consensus 78 ~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (264)
T 2wfl_A 78 DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGMSMIL 157 (264)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEESCTTSCEEEEEC
T ss_pred CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhccCCCCCcchhhh
Confidence 368999999999999999988 9999999999886421 0 01100000 00
Q ss_pred hhhhhhhhc-C--Chh--hhh-h-cCcc----------ccC---CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCC
Q 004735 621 ESRYIDNLV-G--SEK--DYY-E-KSPI----------NFV---DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 680 (732)
Q Consensus 621 ~~~~~~~~~-~--~~~--~~~-~-~sp~----------~~~---~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (732)
...++.... . ..+ .+. . ..+. ... ...++|+|+++|++|.++|++.++.+.+.+. +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p----~ 233 (264)
T 2wfl_A 158 GPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVG----A 233 (264)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHHC----C
T ss_pred hHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCCHHHHHHHHHhCC----C
Confidence 000000000 0 000 000 0 0000 001 1135899999999999999998888888775 3
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 681 VALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 681 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
.++++++++||.. ..+..+++.+.+.+|+.
T Consensus 234 ~~~~~i~~~gH~~-~~e~P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 234 DKVKEIKEADHMG-MLSQPREVCKCLLDISD 263 (264)
T ss_dssp SEEEEETTCCSCH-HHHSHHHHHHHHHHHHC
T ss_pred ceEEEeCCCCCch-hhcCHHHHHHHHHHHhh
Confidence 4899999999964 33666777778887764
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-16 Score=171.13 Aligned_cols=228 Identities=12% Similarity=0.070 Sum_probs=138.9
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHH---HHHHCCCEEEEEcCCCCCCCChhhHHhhc
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQ---YWTSRGWAFVDVNYGGSTGYGREFRERLL 547 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~---~l~~~G~~v~~~d~rG~~g~g~~~~~~~~ 547 (732)
|.++++..+.+.+ ....|.||++||.+.+..... |...+. .|...||.|+++|+||+ ++|.+......
T Consensus 93 g~~l~y~~~G~~~-------~~~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~-~~G~S~~~~~~ 164 (444)
T 2vat_A 93 DVPVAYKSWGRMN-------VSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGS-PFGSAGPCSPD 164 (444)
T ss_dssp EEEEEEEEESCCC-------TTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTC-SSSSSSTTSBC
T ss_pred ceeEEEEEecCCC-------CCCCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCC-CCCCCCCCCCC
Confidence 4455555554432 233589999999865543311 333332 45578999999999984 12222110000
Q ss_pred ----------cCCCcccHHHHHHHHHHHHhcCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH-
Q 004735 548 ----------GRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR- 614 (732)
Q Consensus 548 ----------~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~- 614 (732)
..+....++|..+.+..+++.. ..++ ++++||||||.+++.++. +|++++++|++++........
T Consensus 165 ~~~~~~~~~~~~f~~~t~~~~a~dl~~ll~~l--~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~~~~~~~ 242 (444)
T 2vat_A 165 PDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRL--GVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCRQSGWCA 242 (444)
T ss_dssp TTTC--CBCGGGCCCCCHHHHHHHHHHHHHHH--TCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSBCCHHHH
T ss_pred cccccccccccccccccHHHHHHHHHHHHHhc--CCccceEEEEECHHHHHHHHHHHhChHhhheEEEEeccccCCccch
Confidence 0111235666666666665542 3457 999999999999999988 999999999998865421100
Q ss_pred ----------hhc--------------------------------chhhhhhhhhhc-----------------------
Q 004735 615 ----------AET--------------------------------HKFESRYIDNLV----------------------- 629 (732)
Q Consensus 615 ----------~~~--------------------------------~~~~~~~~~~~~----------------------- 629 (732)
... ..+...+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (444)
T 2vat_A 243 AWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSGN 322 (444)
T ss_dssp HHHHHHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC---------------------
T ss_pred hHHHHHHHHHhcCCccccccccccCCcccchhHHHhhhhccccChHHHHHHhccCccccccccccccccccccccccccc
Confidence 000 000000000000
Q ss_pred -------------------------CChhhh-------hhc--------CccccCCCCCCCEEEEEeCCCCccChHHHHH
Q 004735 630 -------------------------GSEKDY-------YEK--------SPINFVDKFSCPIILFQGLEDKVVPPDQARK 669 (732)
Q Consensus 630 -------------------------~~~~~~-------~~~--------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~ 669 (732)
-+...+ ... +....+.++++|+|+++|++|.+++++.+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~i~~PvLvi~G~~D~~~p~~~~~~ 402 (444)
T 2vat_A 323 SHRAGQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHVE 402 (444)
T ss_dssp ------CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEEEEECTTCSSSCHHHHHH
T ss_pred cccccCchhhHHHHHHHHHHHHhhccCccHHHHHHHHhhhhhccccccccHHHHhhcCCCCEEEEEeCCCCCCCHHHHHH
Confidence 000000 000 1233467889999999999999999998888
Q ss_pred HHHHHHhCCCCEEEEEeC-CCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 670 IYKALKENGLPVALVEYE-GEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~-~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+.+.+. ++++++++ ++||.... +..+++.+.+.+||++++
T Consensus 403 l~~~~p----~~~~~~i~~~~GH~~~~-e~p~~~~~~i~~fL~~~l 443 (444)
T 2vat_A 403 MGRSIP----NSRLCVVDTNEGHDFFV-MEADKVNDAVRGFLDQSL 443 (444)
T ss_dssp HHHHST----TEEEEECCCSCGGGHHH-HTHHHHHHHHHHHHTC--
T ss_pred HHHHCC----CcEEEEeCCCCCcchHH-hCHHHHHHHHHHHHHHhc
Confidence 888764 56999999 89997533 456778888888887655
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-15 Score=153.88 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=81.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+. ..|.||++||.+.. ...|...+..|++.||.|+++|+||.|....... .....+
T Consensus 19 ~g~~l~y~~~G------------~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~-~~~~~~ 83 (328)
T 2cjp_A 19 NGLNMHLAELG------------EGPTILFIHGFPEL--WYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPL-NDPSKF 83 (328)
T ss_dssp TTEEEEEEEEC------------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTSTTCBCCCT-TCGGGG
T ss_pred CCcEEEEEEcC------------CCCEEEEECCCCCc--hHHHHHHHHHHHHCCcEEEEECCCCCCCCCCcCc-CCcccc
Confidence 68888865542 13789999998543 3556777888888999999999998765432100 000011
Q ss_pred Cc-ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 551 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 551 ~~-~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
.. ...+|+.+.++.+.. +.+++.|+||||||.+++.++. +|++++++|++++.
T Consensus 84 ~~~~~a~dl~~~l~~l~~----~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 84 SILHLVGDVVALLEAIAP----NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp SHHHHHHHHHHHHHHHCT----TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred cHHHHHHHHHHHHHHhcC----CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 10 114455555555421 2468999999999999999988 99999999998753
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-14 Score=152.44 Aligned_cols=247 Identities=13% Similarity=0.146 Sum_probs=157.8
Q ss_pred CcEEEEeecc-CCCeE--EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC--ccCCc----------------cc-HHH
Q 004735 460 LPELIEFPTE-VPGQK--AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS--EARGI----------------LN-LSI 517 (732)
Q Consensus 460 ~~~~i~~~~~-~~g~~--i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~--~~~~~----------------~~-~~~ 517 (732)
+..++.|.+. .+|.. +.+.++.|.+. ..+.|+|.+-||..+. .+... +. ...
T Consensus 74 ~a~ri~Y~std~~G~p~~~~gtv~~P~~~------~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~ 147 (462)
T 3guu_A 74 ASFQLQYRTTNTQNEAVADVATVWIPAKP------ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPII 147 (462)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECSSC------CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHH
T ss_pred eEEEEEEEEECCCCCEEEEEEEEEecCCC------CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHH
Confidence 4567777765 24554 78899999872 3347999999995432 22111 11 245
Q ss_pred HHH-HHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC-CCCcEEEEEcChHHHHHHHHHh-C
Q 004735 518 QYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA-DEKRLCITGGSAGGYTTLAALA-F 594 (732)
Q Consensus 518 ~~l-~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~-d~~ri~i~G~S~GG~~a~~~~~-~ 594 (732)
..+ +++||+|+++||+|.+. .|...... ...+.|...++..+. .+ ...+++++|||+||..+++++. +
T Consensus 148 ~~~~l~~G~~Vv~~Dy~G~G~---~y~~~~~~---~~~vlD~vrAa~~~~---~~~~~~~v~l~G~S~GG~aal~aa~~~ 218 (462)
T 3guu_A 148 IGWALQQGYYVVSSDHEGFKA---AFIAGYEE---GMAILDGIRALKNYQ---NLPSDSKVALEGYSGGAHATVWATSLA 218 (462)
T ss_dssp HHHHHHTTCEEEEECTTTTTT---CTTCHHHH---HHHHHHHHHHHHHHT---TCCTTCEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEecCCCCCC---cccCCcch---hHHHHHHHHHHHHhc---cCCCCCCEEEEeeCccHHHHHHHHHhC
Confidence 667 89999999999998764 22211100 011334444444333 23 2479999999999999998876 3
Q ss_pred ----CC-cceEEEeecCcCCHHHHHhhcch-------------hh------hhhhhhhcC--------------------
Q 004735 595 ----RD-TFKAGASLYGVADLSMLRAETHK-------------FE------SRYIDNLVG-------------------- 630 (732)
Q Consensus 595 ----p~-~~~a~v~~~~~~d~~~~~~~~~~-------------~~------~~~~~~~~~-------------------- 630 (732)
|+ .+.+++..++..|+......... +. ..++...+.
T Consensus 219 ~~yapel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~ 298 (462)
T 3guu_A 219 ESYAPELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQV 298 (462)
T ss_dssp HHHCTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHH
T ss_pred hhhcCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHH
Confidence 33 58899999988887654321100 00 000010000
Q ss_pred -------Chhhhhh-cCcc-----------cc---------CCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEE
Q 004735 631 -------SEKDYYE-KSPI-----------NF---------VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 682 (732)
Q Consensus 631 -------~~~~~~~-~sp~-----------~~---------~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (732)
+...|.. .+++ .. -.++++|+||+||.+|.+||+.+++++++.+++.|.+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~G~~V~ 378 (462)
T 3guu_A 299 VLTYPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGANIN 378 (462)
T ss_dssp HHHCTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHhhccCCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCeE
Confidence 0000100 0110 01 234678999999999999999999999999999999999
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCCCCCCC-CCcc
Q 004735 683 LVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVADE-IIPI 726 (732)
Q Consensus 683 ~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~-~~~~ 726 (732)
+++|++++|.... ...+..+++||++.+.+. .+.. |...
T Consensus 379 ~~~y~~~~H~~~~----~~~~~d~l~WL~~r~~G~-~~~~~C~~~ 418 (462)
T 3guu_A 379 FSPYPIAEHLTAE----IFGLVPSLWFIKQAFDGT-TPKVICGTP 418 (462)
T ss_dssp EEEESSCCHHHHH----HHTHHHHHHHHHHHHHTC-CCCCCTTCC
T ss_pred EEEECcCCccCch----hhhHHHHHHHHHHHhCCC-CCCCCCCCC
Confidence 9999999997532 234788899999999866 4444 5433
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=153.90 Aligned_cols=223 Identities=12% Similarity=0.063 Sum_probs=132.3
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
.+...+... +|.++++..+.+.+ +.|.||++||.+.. ...|...+..|++ ||.|+++|+||.+.+..
T Consensus 5 ~~~~~~~~~-~g~~l~~~~~g~~~---------~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~Dl~G~G~S~~ 71 (285)
T 3bwx_A 5 YEDRYWTSS-DGLRLHFRAYEGDI---------SRPPVLCLPGLTRN--ARDFEDLATRLAG-DWRVLCPEMRGRGDSDY 71 (285)
T ss_dssp SEEEEEECT-TSCEEEEEEECBCT---------TSCCEEEECCTTCC--GGGGHHHHHHHBB-TBCEEEECCTTBTTSCC
T ss_pred cccCeeecC-CCceEEEEEcCCCC---------CCCcEEEECCCCcc--hhhHHHHHHHhhc-CCEEEeecCCCCCCCCC
Confidence 355667766 89999987775432 13679999998543 3556777777765 99999999998665432
Q ss_pred hhHHhhccCCCc-ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecC--cCCHHHHHh-
Q 004735 541 EFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYG--VADLSMLRA- 615 (732)
Q Consensus 541 ~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~--~~d~~~~~~- 615 (732)
.- ....+.. ...+|+.+.++.+ ..+++.|+||||||.+++.++. +|++++++|+..+ .........
T Consensus 72 ~~---~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 142 (285)
T 3bwx_A 72 AK---DPMTYQPMQYLQDLEALLAQE------GIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPEVSPEGLERI 142 (285)
T ss_dssp CS---SGGGCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHH
T ss_pred CC---CccccCHHHHHHHHHHHHHhc------CCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCcccCcchhHHH
Confidence 10 0001110 1134555555444 2358999999999999999988 9999999998643 222111000
Q ss_pred -----hc---chh------hhhhhhhhcC--Chhh--------hh---------hcCc-----cc-------------cC
Q 004735 616 -----ET---HKF------ESRYIDNLVG--SEKD--------YY---------EKSP-----IN-------------FV 644 (732)
Q Consensus 616 -----~~---~~~------~~~~~~~~~~--~~~~--------~~---------~~sp-----~~-------------~~ 644 (732)
.. ..+ ........+. .... +. ..++ +. .+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (285)
T 3bwx_A 143 RGYVGQGRNFETWMHAARALQESSGDVYPDWDITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGATPQVDMWPLF 222 (285)
T ss_dssp HHHTTCCCEESSHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTCCCSSCCHHHH
T ss_pred HHHhcCCcccccHHHHHHHHHHhhhhcccccChHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhccccchhhHHH
Confidence 00 000 0000000000 0000 00 0000 00 01
Q ss_pred CCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 645 DKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 645 ~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
.++ ++|+|+++|++|.++++....++.+ . .+.++++++++||.... +..+. +..+.+||++
T Consensus 223 ~~~~~~P~lii~G~~D~~~~~~~~~~~~~----~-~~~~~~~i~~~gH~~~~-e~p~~-~~~i~~fl~~ 284 (285)
T 3bwx_A 223 DALATRPLLVLRGETSDILSAQTAAKMAS----R-PGVELVTLPRIGHAPTL-DEPES-IAAIGRLLER 284 (285)
T ss_dssp HHHTTSCEEEEEETTCSSSCHHHHHHHHT----S-TTEEEEEETTCCSCCCS-CSHHH-HHHHHHHHTT
T ss_pred HHccCCCeEEEEeCCCCccCHHHHHHHHh----C-CCcEEEEeCCCCccchh-hCchH-HHHHHHHHHh
Confidence 223 7999999999999999877666544 3 47899999999997543 34444 4677888753
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=159.94 Aligned_cols=209 Identities=14% Similarity=0.123 Sum_probs=130.3
Q ss_pred CCEEEEEcCCCCCccCC---ccc-----------HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhh--ccCCC-cccHHH
Q 004735 495 PPLLVKSHGGPTSEARG---ILN-----------LSIQYWTSRGWAFVDVNYGGSTGYGREFRERL--LGRWG-IVDVND 557 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~---~~~-----------~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~--~~~~~-~~~~~D 557 (732)
.|.||++||++...... .|. ..++.|+++||.|+++|+||.+.......... ...+. ...++|
T Consensus 50 ~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~d 129 (354)
T 2rau_A 50 NDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWISD 129 (354)
T ss_dssp EEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHHHH
T ss_pred CCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHHHH
Confidence 58899999986554311 222 56788999999999999998654332111000 00111 122678
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCCH---------------HHHHhhc---
Q 004735 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADL---------------SMLRAET--- 617 (732)
Q Consensus 558 ~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d~---------------~~~~~~~--- 617 (732)
+.++++++.++ .+.++++++|||+||.+++.++. + |++++++|+.++.... ..+....
T Consensus 130 ~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (354)
T 2rau_A 130 IKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGIYV 207 (354)
T ss_dssp HHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHHTCCE
T ss_pred HHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhhcccc
Confidence 88888888765 24578999999999999999988 7 9999999999653210 0000000
Q ss_pred ------------------c---------hhhhhhhhh-----hcCCh------------------------hhhhhcCcc
Q 004735 618 ------------------H---------KFESRYIDN-----LVGSE------------------------KDYYEKSPI 641 (732)
Q Consensus 618 ------------------~---------~~~~~~~~~-----~~~~~------------------------~~~~~~sp~ 641 (732)
. .....++.. ...++ ..+...+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2rau_A 208 IPSRGGPNNPIWSYALANPDMPSPDPKYKSISDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERDLK 287 (354)
T ss_dssp EECSSSTTCTHHHHHHHSTTSCCSSTTSSSHHHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHTTTCC
T ss_pred cCCCchhhhHHHHHhccccccCccccchhhHHHHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccCcccc
Confidence 0 000000000 00000 000112233
Q ss_pred ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC--CCcccHHHHHHHHHHHHHHH
Q 004735 642 NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF--RKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 642 ~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~--~~~~~~~~~~~~~~~fl~~~ 713 (732)
..+.++++|+|+++|++|.++|. .+. ....+.++++++++||.. ..++..+++.+.+.+||++.
T Consensus 288 ~~l~~i~~P~Lii~G~~D~~~p~-~~~-------~l~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 288 FDYEGILVPTIAFVSERFGIQIF-DSK-------ILPSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp CCCTTCCCCEEEEEETTTHHHHB-CGG-------GSCTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred cccccCCCCEEEEecCCCCCCcc-chh-------hhccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 45668999999999999987652 222 222356999999999975 24466788999999999864
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=151.17 Aligned_cols=205 Identities=14% Similarity=0.078 Sum_probs=127.0
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
....|.||++||++. ....|...+..|++. |.|+++|+||.+. +.... .....++..+.+..+++..
T Consensus 17 ~~~~~~vv~~HG~~~--~~~~~~~~~~~l~~~-~~v~~~d~~G~G~---s~~~~-----~~~~~~~~~~~~~~~l~~~-- 83 (267)
T 3fla_A 17 PDARARLVCLPHAGG--SASFFFPLAKALAPA-VEVLAVQYPGRQD---RRHEP-----PVDSIGGLTNRLLEVLRPF-- 83 (267)
T ss_dssp TTCSEEEEEECCTTC--CGGGGHHHHHHHTTT-EEEEEECCTTSGG---GTTSC-----CCCSHHHHHHHHHHHTGGG--
T ss_pred CCCCceEEEeCCCCC--CchhHHHHHHHhccC-cEEEEecCCCCCC---CCCCC-----CCcCHHHHHHHHHHHHHhc--
Confidence 455799999999844 345666777777654 9999999996543 32111 1234566666665555542
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCc----ceEEEeecCcCCHH------------HHHhhcch---hhh---------
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDT----FKAGASLYGVADLS------------MLRAETHK---FES--------- 622 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~----~~a~v~~~~~~d~~------------~~~~~~~~---~~~--------- 622 (732)
+.+++.|+|||+||.+++.++. +|++ ++++++.++..... .+...... ...
T Consensus 84 ~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (267)
T 3fla_A 84 GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLADPELL 163 (267)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHSHHHH
T ss_pred CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccCHHHH
Confidence 4578999999999999999998 8876 88888887653210 00000000 000
Q ss_pred -hhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHH
Q 004735 623 -RYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKF 701 (732)
Q Consensus 623 -~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~ 701 (732)
.+...+..+......+.... ..++++|+|+++|++|.+++++....+.+.+.. +++++++++ ||.+. .++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~g-gH~~~-~~~~~~ 237 (267)
T 3fla_A 164 AMVLPAIRSDYRAVETYRHEP-GRRVDCPVTVFTGDHDPRVSVGEARAWEEHTTG---PADLRVLPG-GHFFL-VDQAAP 237 (267)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT-TCCBSSCEEEEEETTCTTCCHHHHHGGGGGBSS---CEEEEEESS-STTHH-HHTHHH
T ss_pred HHHHHHHHHHHHhhhcccccc-cCcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC---CceEEEecC-Cceee-ccCHHH
Confidence 00000000001111122111 157889999999999999999887777665532 589999998 99753 345667
Q ss_pred HHHHHHHHHHHHhC
Q 004735 702 TLEQQMVFFARVVG 715 (732)
Q Consensus 702 ~~~~~~~fl~~~l~ 715 (732)
+.+.+.+||++...
T Consensus 238 ~~~~i~~fl~~~~~ 251 (267)
T 3fla_A 238 MIATMTEKLAGPAL 251 (267)
T ss_dssp HHHHHHHHTC----
T ss_pred HHHHHHHHhccccc
Confidence 77777777776654
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=153.81 Aligned_cols=214 Identities=11% Similarity=0.073 Sum_probs=131.7
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCc
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 552 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~ 552 (732)
.++++...-|. ...|.||++||.+.. ...|...+..|++.||.|+++|+||.+.+...-. . ..
T Consensus 33 ~~l~y~~~G~~---------~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~~---~---~~ 95 (297)
T 2xt0_A 33 LRMHYVDEGPR---------DAEHTFLCLHGEPSW--SFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTD---D---AV 95 (297)
T ss_dssp CCEEEEEESCT---------TCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTTSCEESC---G---GG
T ss_pred eEEEEEEccCC---------CCCCeEEEECCCCCc--ceeHHHHHHHHHhCCcEEEEeCCCCCCCCCCCCC---c---cc
Confidence 78886665431 113679999998543 3456667888999999999999997765432100 0 01
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH--------HHHH---hhcch-
Q 004735 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL--------SMLR---AETHK- 619 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~--------~~~~---~~~~~- 619 (732)
..+++..+.+..+++.. +.+++.|+||||||.+++.++. +|++++++|+.++.... ..+. .....
T Consensus 96 ~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (297)
T 2xt0_A 96 YTFGFHRRSLLAFLDAL--QLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFESWRDFVANSPDL 173 (297)
T ss_dssp CCHHHHHHHHHHHHHHH--TCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHHHHHHHHHTCTTC
T ss_pred CCHHHHHHHHHHHHHHh--CCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHHHHHHHhhccccc
Confidence 23444444444444432 2368999999999999999998 99999999998874310 0000 00000
Q ss_pred ------------hh----hhhhhhhcCCh------hhhhhcC--------------ccccCC-CCCCCEEEEEeCCCCcc
Q 004735 620 ------------FE----SRYIDNLVGSE------KDYYEKS--------------PINFVD-KFSCPIILFQGLEDKVV 662 (732)
Q Consensus 620 ------------~~----~~~~~~~~~~~------~~~~~~s--------------p~~~~~-~i~~P~Lii~G~~D~~v 662 (732)
+. ..+.. .+... ..+.... ....+. ++++|+|+++|++|.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~~D~~~ 252 (297)
T 2xt0_A 174 DVGKLMQRAIPGITDAEVAAYDA-PFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPTFMAVGAQDPVL 252 (297)
T ss_dssp CHHHHHHHHSTTCCHHHHHHHHT-TCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCEEEEEETTCSSS
T ss_pred chhHHHhccCccCCHHHHHHHhc-cccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCeEEEEeCCCccc
Confidence 00 00000 00000 0010000 012345 88999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 663 PPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 663 ~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+ ....++.+.+... ....+.++++||... . ..+++.+.+.+|+.
T Consensus 253 ~-~~~~~~~~~~p~~--~~~~~~~~~~GH~~~-~-~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 253 G-PEVMGMLRQAIRG--CPEPMIVEAGGHFVQ-E-HGEPIARAALAAFG 296 (297)
T ss_dssp S-HHHHHHHHHHSTT--CCCCEEETTCCSSGG-G-GCHHHHHHHHHHTT
T ss_pred C-hHHHHHHHhCCCC--eeEEeccCCCCcCcc-c-CHHHHHHHHHHHHh
Confidence 8 7788887777543 233444789999754 3 66778888888864
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-16 Score=160.40 Aligned_cols=199 Identities=16% Similarity=0.086 Sum_probs=125.2
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+... ..|...... .||.|+++|+||.+..... .......++..+.+..+++.. +.+
T Consensus 81 ~~~vv~~hG~~~~~--~~~~~~~~~---lg~~Vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l--~~~ 146 (330)
T 3p2m_A 81 APRVIFLHGGGQNA--HTWDTVIVG---LGEPALAVDLPGHGHSAWR-------EDGNYSPQLNSETLAPVLREL--APG 146 (330)
T ss_dssp CCSEEEECCTTCCG--GGGHHHHHH---SCCCEEEECCTTSTTSCCC-------SSCBCCHHHHHHHHHHHHHHS--STT
T ss_pred CCeEEEECCCCCcc--chHHHHHHH---cCCeEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHh--CCC
Confidence 37799999985443 345444443 4999999999986543211 012234556665555555542 356
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcch----------------hhhhhhhhhc----C-Ch
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHK----------------FESRYIDNLV----G-SE 632 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~----------------~~~~~~~~~~----~-~~ 632 (732)
++.|+|||+||.+++.++. +|++++++|++++............. .......... . ..
T Consensus 147 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (330)
T 3p2m_A 147 AEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDV 226 (330)
T ss_dssp CCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBSCHHHHHHHHHHHCTTSCH
T ss_pred CcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccccCHHHHHHHHHhcCCCCCH
Confidence 8999999999999999988 99999999999875432111000000 0000000000 0 00
Q ss_pred hhhh-----------------hcC----------ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEE-EE
Q 004735 633 KDYY-----------------EKS----------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA-LV 684 (732)
Q Consensus 633 ~~~~-----------------~~s----------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~-~~ 684 (732)
..+. ... ....+.++++|+|+++|++|.+++++.++++.+.+. +.+ ++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~~~~l~~~~~----~~~~~~ 302 (330)
T 3p2m_A 227 KSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSGFVTDQDTAELHRRAT----HFRGVH 302 (330)
T ss_dssp HHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCEEEEEETTCCSSCHHHHHHHHHHCS----SEEEEE
T ss_pred HHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeeEE
Confidence 0000 000 012345788999999999999999998888877664 457 99
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 685 EYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 685 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+++++||.+ ..+..+++.+.+.+||++
T Consensus 303 ~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 303 IVEKSGHSV-QSDQPRALIEIVRGVLDT 329 (330)
T ss_dssp EETTCCSCH-HHHCHHHHHHHHHHHTTC
T ss_pred EeCCCCCCc-chhCHHHHHHHHHHHHhc
Confidence 999999965 335666777777777653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-14 Score=167.21 Aligned_cols=264 Identities=11% Similarity=0.013 Sum_probs=172.1
Q ss_pred eEEECCEEEEEeCCC----CeEEEEeCC---CCCCCceecCCCCC---CCCeEeeceeecCCCCEEEEEEeccCCCCCCc
Q 004735 150 FRIFGDTVIFSNYKD----QRLYKHSID---SKDSSPLPITPDYG---EPLVSYADGIFDPRFNRYVTVREDRRQDALNS 219 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~----~~l~~~d~~---~~~~~~~~lt~~~~---~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 219 (732)
..+++++++|..... ..||+++.. + +..++|..... ........++|||||++|+|...+.+.+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e---- 187 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVG--TKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD---- 187 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTT--CCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS----
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCC--CCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc----
Confidence 457888998887543 378999986 5 66777543210 0124567889999999999988765432
Q ss_pred eeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCC------CCCccEEEEEEecCCCceeeeEEec
Q 004735 220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM------PWDKAELWVGYISENGDVYKRVCVA 293 (732)
Q Consensus 220 ~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~------~~~~~~l~v~d~~~~g~~~~~~~~~ 293 (732)
..+|+++|+++|+ ....+........+.|||| ++|+|.+.+.... .....+||++++. ++......+..
T Consensus 188 ~~~i~v~dl~tg~---~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg-t~~~~~~lv~~ 262 (741)
T 1yr2_A 188 WRTVKFVGVADGK---PLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLG-TPQSADQPVFA 262 (741)
T ss_dssp EEEEEEEETTTCC---EEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETT-SCGGGCEEEEC
T ss_pred eEEEEEEECCCCC---CCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECC-CCchhCEEEec
Confidence 3689999999998 5444322222357999999 9999998554310 0014569999987 55432233444
Q ss_pred CCCCCccccCcCceeCCCCc-EEEEEeccC-CeeeEEEEeccCC--e-EEEecccccccCCCceeecccceeeeeecCCC
Q 004735 294 GFDPTIVESPTEPKWSSKGE-LFFVTDRKN-GFWNLHKWIESNN--E-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEK 368 (732)
Q Consensus 294 ~~~~~~~~~~~~~~wspDg~-l~~~~~~~~-g~~~l~~~d~~~g--~-~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 368 (732)
..+.. .....+.|||||+ |++.+.+.. +...||++|++++ + .+.|+........+ +.+ ++
T Consensus 263 ~~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~------------dg 327 (741)
T 1yr2_A 263 TPELP--KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDG------------VG 327 (741)
T ss_dssp CTTCT--TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEE------------ET
T ss_pred cCCCC--eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-Eec------------cC
Confidence 33200 2356789999999 888776521 4668999999887 6 67776442211111 112 78
Q ss_pred CEEEEEEEECC-EEEEEEEECCCC--ceEEeccCCC-ceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 369 NLIACSYRQNG-RSYLGILDDFGH--SLSLLDIPFT-DIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 369 ~~l~~~s~~~g-~~~ly~~~~~~~--~~~~lt~~~~-~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
+.|++.+++++ ..+||+++++++ +++.|..... .+..+...++.+++... .+....||+++++++..+.|+
T Consensus 328 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l~ 402 (741)
T 1yr2_A 328 DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYI-HDAKSQVLAFDLDGKPAGAVS 402 (741)
T ss_dssp TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEE-ETTEEEEEEEETTSCEEEECB
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEE-ECCEEEEEEEeCCCCceeecc
Confidence 89999887654 578999999884 5677765433 35455444666655554 455677999998776665554
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-15 Score=151.76 Aligned_cols=212 Identities=11% Similarity=-0.015 Sum_probs=131.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|..+++..+. ..|.||++||++... ..|...+..|+++ |.|+++|+||.+..... .
T Consensus 18 ~g~~l~~~~~g------------~~~~vv~lHG~~~~~--~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~-----~--- 74 (301)
T 3kda_A 18 DGVKLHYVKGG------------QGPLVMLVHGFGQTW--YEWHQLMPELAKR-FTVIAPDLPGLGQSEPP-----K--- 74 (301)
T ss_dssp TTEEEEEEEEE------------SSSEEEEECCTTCCG--GGGTTTHHHHTTT-SEEEEECCTTSTTCCCC-----S---
T ss_pred CCeEEEEEEcC------------CCCEEEEECCCCcch--hHHHHHHHHHHhc-CeEEEEcCCCCCCCCCC-----C---
Confidence 78888866553 237899999985443 4566677888887 99999999987654322 1
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH----------------
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---------------- 612 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~---------------- 612 (732)
.....++..+.+..+++.. +.++ +.|+|||+||.+++.++. +|++++++|++++......
T Consensus 75 ~~~~~~~~~~~l~~~l~~l--~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (301)
T 3kda_A 75 TGYSGEQVAVYLHKLARQF--SPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVW 152 (301)
T ss_dssp SCSSHHHHHHHHHHHHHHH--CSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGSBSEETTEECSST
T ss_pred CCccHHHHHHHHHHHHHHc--CCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccchhhhcchhhhhhh
Confidence 1233555555555554442 3456 999999999999999988 9999999999998531100
Q ss_pred -------------HHhhc--chhhhhhhhhhcCC-----h---hh-----------------hh--------hcCccccC
Q 004735 613 -------------LRAET--HKFESRYIDNLVGS-----E---KD-----------------YY--------EKSPINFV 644 (732)
Q Consensus 613 -------------~~~~~--~~~~~~~~~~~~~~-----~---~~-----------------~~--------~~sp~~~~ 644 (732)
..... ..+...++.....+ + +. +. .......+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (301)
T 3kda_A 153 HFSFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNESVRQNAELAKTR 232 (301)
T ss_dssp HHHHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHHHHHHHHHHTTSC
T ss_pred hHHHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhccchhhcccchhhc
Confidence 00000 00001111111100 0 00 00 00011123
Q ss_pred CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 645 DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 645 ~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.++++|+|+++|++| +++.....+. +...++++++++++||.+ ..+..+++.+.+.+|+++.-
T Consensus 233 ~~i~~P~l~i~G~~D--~~~~~~~~~~----~~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~~l~~~~ 295 (301)
T 3kda_A 233 LQMPTMTLAGGGAGG--MGTFQLEQMK----AYAEDVEGHVLPGCGHWL-PEECAAPMNRLVIDFLSRGR 295 (301)
T ss_dssp BCSCEEEEEECSTTS--CTTHHHHHHH----TTBSSEEEEEETTCCSCH-HHHTHHHHHHHHHHHHTTSC
T ss_pred cccCcceEEEecCCC--CChhHHHHHH----hhcccCeEEEcCCCCcCc-hhhCHHHHHHHHHHHHhhCc
Confidence 388999999999999 5665555543 333468999999999964 33566677777777766543
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=150.54 Aligned_cols=200 Identities=11% Similarity=0.063 Sum_probs=127.3
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+... ..|...+..|++. |.|+++|+||.+...... . ....+++..+.+..+++.. +.++
T Consensus 17 ~~vvllHG~~~~~--~~~~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~-----~--~~~~~~~~~~dl~~~l~~l--~~~~ 84 (269)
T 2xmz_A 17 QVLVFLHGFLSDS--RTYHNHIEKFTDN-YHVITIDLPGHGEDQSSM-----D--ETWNFDYITTLLDRILDKY--KDKS 84 (269)
T ss_dssp EEEEEECCTTCCG--GGGTTTHHHHHTT-SEEEEECCTTSTTCCCCT-----T--SCCCHHHHHHHHHHHHGGG--TTSE
T ss_pred CeEEEEcCCCCcH--HHHHHHHHHHhhc-CeEEEecCCCCCCCCCCC-----C--CccCHHHHHHHHHHHHHHc--CCCc
Confidence 4599999985443 4455667777664 999999999776543210 1 0134566666666665552 3468
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH---HH----H------h-----hcchhhhhhh-----h-----
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---ML----R------A-----ETHKFESRYI-----D----- 626 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~---~~----~------~-----~~~~~~~~~~-----~----- 626 (732)
+.++||||||.+++.++. +|++++++|+.++...+. .. . . ....+...+. .
T Consensus 85 ~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (269)
T 2xmz_A 85 ITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLFQSQLEL 164 (269)
T ss_dssp EEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTSGGGGGGGGS
T ss_pred EEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHHHHhCccccccccC
Confidence 999999999999999998 999999999998654221 00 0 0 0000000000 0
Q ss_pred ------hhc-----CChhh----hhh------cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 627 ------NLV-----GSEKD----YYE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 627 ------~~~-----~~~~~----~~~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
.+. ..+.. +.. .+....+.++++|+|+++|++|..++..... +.+.+ .+.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~-~~~~~----~~~~~~~ 239 (269)
T 2xmz_A 165 PVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFVQIAKK-MANLI----PNSKCKL 239 (269)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHHHHHHH-HHHHS----TTEEEEE
T ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccCHHHHH-HHhhC----CCcEEEE
Confidence 000 01100 000 0112346678899999999999988876543 54433 3679999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
++++||.... +..+++.+.+.+|+++.
T Consensus 240 i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 240 ISATGHTIHV-EDSDEFDTMILGFLKEE 266 (269)
T ss_dssp ETTCCSCHHH-HSHHHHHHHHHHHHHHH
T ss_pred eCCCCCChhh-cCHHHHHHHHHHHHHHh
Confidence 9999997533 56778888999999764
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-15 Score=153.63 Aligned_cols=213 Identities=13% Similarity=0.098 Sum_probs=133.6
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCc
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 552 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~ 552 (732)
.++++...-|. ...|.||++||++... ..|...+..|++.||.|+++|+||.|.+...- .. ..
T Consensus 34 ~~l~y~~~G~~---------~~g~~vvllHG~~~~~--~~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~---~~---~~ 96 (310)
T 1b6g_A 34 LRAHYLDEGNS---------DAEDVFLCLHGEPTWS--YLYRKMIPVFAESGARVIAPDFFGFGKSDKPV---DE---ED 96 (310)
T ss_dssp CEEEEEEEECT---------TCSCEEEECCCTTCCG--GGGTTTHHHHHHTTCEEEEECCTTSTTSCEES---CG---GG
T ss_pred eEEEEEEeCCC---------CCCCEEEEECCCCCch--hhHHHHHHHHHhCCCeEEEeCCCCCCCCCCCC---Cc---CC
Confidence 78887665431 1137899999985443 45666788899999999999999765543210 00 11
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC--H-----------------HH
Q 004735 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD--L-----------------SM 612 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d--~-----------------~~ 612 (732)
..+++..+.+..+++... .+++.|+||||||.+++.++. +|++++++|+.++... . ..
T Consensus 97 y~~~~~a~dl~~ll~~l~--~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (310)
T 1b6g_A 97 YTFEFHRNFLLALIERLD--LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFTA 174 (310)
T ss_dssp CCHHHHHHHHHHHHHHHT--CCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHHH
T ss_pred cCHHHHHHHHHHHHHHcC--CCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchhhhhhccchHHHH
Confidence 234444444444444322 368999999999999999998 9999999999886431 0 00
Q ss_pred HHhh---cch-------------hh----hhhhhhhcCCh------hhhhh--cC-----------ccccCC-CCCCCEE
Q 004735 613 LRAE---THK-------------FE----SRYIDNLVGSE------KDYYE--KS-----------PINFVD-KFSCPII 652 (732)
Q Consensus 613 ~~~~---~~~-------------~~----~~~~~~~~~~~------~~~~~--~s-----------p~~~~~-~i~~P~L 652 (732)
+... ... +. ..+.. .+... ..+.. .. ....+. ++++|+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~L 253 (310)
T 1b6g_A 175 WKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAA-PFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQTF 253 (310)
T ss_dssp HHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHT-TCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred HHHHhccCchhhhhhHHhhcCCCCCHHHHHHHhc-ccCCccchHHHHHHHHHhcccccchhhhhhhHhhhhhccccCceE
Confidence 0000 000 00 00000 00000 00000 00 012245 8999999
Q ss_pred EEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe--CCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEY--EGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~--~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+++|++|.+++ ..+..+.+.+... +++++ +++||... . ..+++.+.+.+||.+
T Consensus 254 vi~G~~D~~~~-~~~~~~~~~ip~~----~~~~i~~~~~GH~~~-~-~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 254 MAIGMKDKLLG-PDVMYPMKALING----CPEPLEIADAGHFVQ-E-FGEQVAREALKHFAE 308 (310)
T ss_dssp EEEETTCSSSS-HHHHHHHHHHSTT----CCCCEEETTCCSCGG-G-GHHHHHHHHHHHHHH
T ss_pred EEeccCcchhh-hHHHHHHHhcccc----cceeeecCCcccchh-h-ChHHHHHHHHHHHhc
Confidence 99999999999 8888887777532 44445 99999754 3 778888999999875
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-15 Score=148.68 Aligned_cols=202 Identities=14% Similarity=0.055 Sum_probs=128.6
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+ .....|...+..|+++||.|+++|+||.+...... . ....+++..+.+..+++... ..++
T Consensus 4 ~~vvllHG~~--~~~~~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~----~---~~~~~~~~a~dl~~~l~~l~-~~~~ 73 (257)
T 3c6x_A 4 AHFVLIHTIC--HGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQI----E---EIGSFDEYSEPLLTFLEALP-PGEK 73 (257)
T ss_dssp CEEEEECCTT--CCGGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCG----G---GCCSHHHHTHHHHHHHHTSC-TTCC
T ss_pred CcEEEEcCCc--cCcCCHHHHHHHHHhCCCEEEEeCCCCCCCCCCCc----c---cccCHHHHHHHHHHHHHhcc-ccCC
Confidence 6799999984 33455777888999999999999999876543210 0 11235555555555555421 1368
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC-----HH----HHHhhcchh--------------------hhhhh
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD-----LS----MLRAETHKF--------------------ESRYI 625 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d-----~~----~~~~~~~~~--------------------~~~~~ 625 (732)
+.|+||||||.+++.++. +|++++++|+.++... .. .+......+ ...+.
T Consensus 74 ~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
T 3c6x_A 74 VILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLL 153 (257)
T ss_dssp EEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccccHHHH
Confidence 999999999999999998 9999999998876421 10 111000000 00000
Q ss_pred hhhc-C-Ch-h---hhhh-cCcc----------ccC--CC-CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 626 DNLV-G-SE-K---DYYE-KSPI----------NFV--DK-FSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 626 ~~~~-~-~~-~---~~~~-~sp~----------~~~--~~-i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
...+ . .+ + .... ..+. ... .. .++|+|+++|++|.++|+..++++.+.+. +.++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~~----~~~~~~ 229 (257)
T 3c6x_A 154 RENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYK----PDKVYK 229 (257)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSC----CSEEEE
T ss_pred HHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccCHHHHHHHHHHCC----CCeEEE
Confidence 0000 0 00 0 0000 0000 001 11 25899999999999999998888877764 458999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
++++||.. ..+..+++.+.+.+|+++
T Consensus 230 i~~~gH~~-~~e~P~~~~~~l~~f~~~ 255 (257)
T 3c6x_A 230 VEGGDHKL-QLTKTKEIAEILQEVADT 255 (257)
T ss_dssp CCSCCSCH-HHHSHHHHHHHHHHHHHH
T ss_pred eCCCCCCc-ccCCHHHHHHHHHHHHHh
Confidence 99999964 446777888888888875
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-15 Score=140.46 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=117.6
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
+.|.||++||++.... ..|......+... ++.++.+|.. ....++..+.+..+.+.. +
T Consensus 16 ~~~~vv~~HG~~~~~~-~~~~~~~~~~~~~---~~~v~~~~~~---------------~~~~~~~~~~~~~~~~~~--~- 73 (191)
T 3bdv_A 16 QQLTMVLVPGLRDSDD-EHWQSHWERRFPH---WQRIRQREWY---------------QADLDRWVLAIRRELSVC--T- 73 (191)
T ss_dssp TTCEEEEECCTTCCCT-TSHHHHHHHHCTT---SEECCCSCCS---------------SCCHHHHHHHHHHHHHTC--S-
T ss_pred CCceEEEECCCCCCch-hhHHHHHHHhcCC---eEEEeccCCC---------------CcCHHHHHHHHHHHHHhc--C-
Confidence 3588999999854331 2333333322223 3556666421 123556666666665552 3
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEE
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPII 652 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~L 652 (732)
++++++|||+||.+++.++. +|++++++++.+|........ .+...+.++++|+|
T Consensus 74 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~------------------------~~~~~~~~~~~P~l 129 (191)
T 3bdv_A 74 QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEI------------------------DDRIQASPLSVPTL 129 (191)
T ss_dssp SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGTC------------------------TTTSCSSCCSSCEE
T ss_pred CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccccC------------------------ccccccccCCCCEE
Confidence 79999999999999999998 899999999999976533100 00134567889999
Q ss_pred EEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc--ccHHHHHHHHHHHHHHHh
Q 004735 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA--ENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~~~l 714 (732)
+++|++|.++|++.++++.+.+ +.++++++++||.+... ....+..+.+.+|+++..
T Consensus 130 ii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~~ 188 (191)
T 3bdv_A 130 TFASHNDPLMSFTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEILI 188 (191)
T ss_dssp EEECSSBTTBCHHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTTC
T ss_pred EEecCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHHHHhc
Confidence 9999999999999999988876 34899999999986432 133455578888887653
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-15 Score=166.24 Aligned_cols=235 Identities=14% Similarity=0.075 Sum_probs=157.2
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
.+++++..|+|....++.+-++++++ ++.++|+... ......+.|||| +++|+.....+.. ...||.+++
T Consensus 28 ~~~~DG~~la~~s~~~g~~~lw~~~~--g~~~~lt~~~---~~~~~~~~~spd--~~l~~~~~~~g~~---~~~l~~~~~ 97 (582)
T 3o4h_A 28 QGVVDGDKLLVVGFSEGSVNAYLYDG--GETVKLNREP---INSVLDPHYGVG--RVILVRDVSKGAE---QHALFKVNT 97 (582)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEET--TEEEECCSSC---CSEECEECTTCS--EEEEEEECSTTSC---CEEEEEEET
T ss_pred ecCCCCCeEEEEEccCCceeEEEEcC--CCcEeeeccc---ccccccccCCCC--eEEEEeccCCCCc---ceEEEEEec
Confidence 45667789999876566443444566 7889999762 235577899999 5778776422111 368999999
Q ss_pred --CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 229 --NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 229 --~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
+++. .+++...... .+.|||||+.++|++.... . +.++|++ +|+.+.+. ... . ..+
T Consensus 98 ~~~g~~----~~l~~~~~~~-~~~~s~dg~~~~~~s~~~~-----~--~~l~d~~-~g~~~~l~--~~~-----~--~~~ 155 (582)
T 3o4h_A 98 SRPGEE----QRLEAVKPMR-ILSGVDTGEAVVFTGATED-----R--VALYALD-GGGLRELA--RLP-----G--FGF 155 (582)
T ss_dssp TSTTCC----EECTTSCSBE-EEEEEECSSCEEEEEECSS-----C--EEEEEEE-TTEEEEEE--EES-----S--CEE
T ss_pred cCCCcc----ccccCCCCce-eeeeCCCCCeEEEEecCCC-----C--ceEEEcc-CCcEEEee--cCC-----C--ceE
Confidence 6554 4666554433 5699999999999874442 2 3466888 77653332 222 2 578
Q ss_pred eeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEE
Q 004735 307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (732)
Q Consensus 307 ~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~ 385 (732)
.|||||+ |++.+.+..+...||++|+++++.+.|+........+.|++ ||+.|+ .+++++..+||+
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp------------DG~~l~-~~~~~~~~~i~~ 222 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP------------GMKVTA-GLETAREARLVT 222 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT------------TSCEEE-EEECSSCEEEEE
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC------------CCCEEE-EccCCCeeEEEE
Confidence 9999999 88777663455779999999999998886655556677776 888777 777788889999
Q ss_pred EECCCCceEEeccCCCceEEe---------eEeCCEEEEEEeCCCCCcEEEEE
Q 004735 386 LDDFGHSLSLLDIPFTDIDNI---------TLGNDCLFVEGASGVEPSSVAKV 429 (732)
Q Consensus 386 ~~~~~~~~~~lt~~~~~v~~~---------~~~~~~~~~~~~~~~~~~~ly~~ 429 (732)
+++++++.+.++.....+..+ .++++.+++..+ .++...||.+
T Consensus 223 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~-~~g~~~l~~~ 274 (582)
T 3o4h_A 223 VDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR-REGRSAVFID 274 (582)
T ss_dssp ECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE-ETTEEEEEET
T ss_pred EcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEE-cCCcEEEEEE
Confidence 999999888444433333221 244555555444 3333445543
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-15 Score=151.72 Aligned_cols=220 Identities=10% Similarity=0.001 Sum_probs=140.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+.+ .|.||++||.+... ..|...+..|++. |.|+++|+||.+...... ....
T Consensus 17 ~g~~l~~~~~g~------------~~~vv~lHG~~~~~--~~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~----~~~~ 77 (302)
T 1mj5_A 17 KGRRMAYIDEGT------------GDPILFQHGNPTSS--YLWRNIMPHCAGL-GRLIACDLIGMGDSDKLD----PSGP 77 (302)
T ss_dssp TTEEEEEEEESC------------SSEEEEECCTTCCG--GGGTTTGGGGTTS-SEEEEECCTTSTTSCCCS----SCST
T ss_pred CCEEEEEEEcCC------------CCEEEEECCCCCch--hhhHHHHHHhccC-CeEEEEcCCCCCCCCCCC----CCCc
Confidence 788888655421 37899999985443 3455555666555 899999999865433210 0011
Q ss_pred CcccHHHHHHHHHHHHhcCCCCC-CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC---HHHH-------Hhh--
Q 004735 551 GIVDVNDCCSCATFLVGSGKADE-KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSML-------RAE-- 616 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~-~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d---~~~~-------~~~-- 616 (732)
.....++..+.+..+++.. +. ++++++|||+||.+++.++. +|++++++|+++|... +... ...
T Consensus 78 ~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (302)
T 1mj5_A 78 ERYAYAEHRDYLDALWEAL--DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFR 155 (302)
T ss_dssp TSSCHHHHHHHHHHHHHHT--TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHh--CCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHHHHHHHh
Confidence 1234566666666655553 34 78999999999999999998 9999999999998653 1100 000
Q ss_pred ----------cchhhhhhhhhhcC---Ch-----------------h----hhhhc--------------CccccCCCCC
Q 004735 617 ----------THKFESRYIDNLVG---SE-----------------K----DYYEK--------------SPINFVDKFS 648 (732)
Q Consensus 617 ----------~~~~~~~~~~~~~~---~~-----------------~----~~~~~--------------sp~~~~~~i~ 648 (732)
...+...+...... .. . .+... +....+.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 235 (302)
T 1mj5_A 156 SQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESP 235 (302)
T ss_dssp STTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTTCC
T ss_pred ccchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHhhhhccC
Confidence 00000000000000 00 0 00000 1123456789
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCCC
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFD 718 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~ 718 (732)
+|+|+++|++|.++|++..+++.+.+. + +++++ ++||.+. .+..+++.+.+.+|+.+...+..
T Consensus 236 ~P~l~i~g~~D~~~~~~~~~~~~~~~~----~-~~~~~-~~gH~~~-~e~p~~~~~~i~~fl~~~~~~~~ 298 (302)
T 1mj5_A 236 IPKLFINAEPGALTTGRMRDFCRTWPN----Q-TEITV-AGAHFIQ-EDSPDEIGAAIAAFVRRLRPAHH 298 (302)
T ss_dssp SCEEEEEEEECSSSSHHHHHHHTTCSS----E-EEEEE-EESSCGG-GTCHHHHHHHHHHHHHHHSCCCC
T ss_pred CCeEEEEeCCCCCCChHHHHHHHHhcC----C-ceEEe-cCcCccc-ccCHHHHHHHHHHHHHhhccccc
Confidence 999999999999999977776655442 4 88889 9999753 46678899999999998776543
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=150.28 Aligned_cols=208 Identities=13% Similarity=0.072 Sum_probs=128.0
Q ss_pred CCCEEEEEcCCCCCccCC--cccHHHHHHHHCCCEEEEEcCCCCCCC-------Chh-hH---H-hhccCC----CcccH
Q 004735 494 KPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGY-------GRE-FR---E-RLLGRW----GIVDV 555 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~--~~~~~~~~l~~~G~~v~~~d~rG~~g~-------g~~-~~---~-~~~~~~----~~~~~ 555 (732)
+.|.||++||...+...+ ....+.+.|.+.||.|+.+|+++.... +.. +. . .....| .....
T Consensus 4 ~~~~vl~lHG~g~~~~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~~~~~~~~ 83 (243)
T 1ycd_A 4 QIPKLLFLHGFLQNGKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYHSEISHE 83 (243)
T ss_dssp CCCEEEEECCTTCCHHHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSCCCSSGGG
T ss_pred cCceEEEeCCCCccHHHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcccccCCCCcch
Confidence 458999999985443221 122456677778999999999832110 000 00 0 000011 11124
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CC------CcceEEEeecCcCCHHHHHhhcchhhhhhhhhh
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR------DTFKAGASLYGVADLSMLRAETHKFESRYIDNL 628 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p------~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (732)
.|+.++++++.+....+..+++|+|||+||.+++.++. ++ ..+++++..++........ ..... + .
T Consensus 84 ~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~----~~~~~-~--~ 156 (243)
T 1ycd_A 84 LDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP----EHPGE-L--R 156 (243)
T ss_dssp CCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT----TSTTC-E--E
T ss_pred hhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc----ccccc-c--c
Confidence 56666666665542223468999999999999999887 42 3577888888765421100 00000 0 0
Q ss_pred cCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCC---CCEEEEEeCCCCccCCCcccHHHHHHH
Q 004735 629 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG---LPVALVEYEGEQHGFRKAENIKFTLEQ 705 (732)
Q Consensus 629 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g---~~~~~~~~~~~gH~~~~~~~~~~~~~~ 705 (732)
+. ..+. .....+.++++|+|++||++|.++|+++++++++.++..+ .....++++++||.+... ....+.
T Consensus 157 ~~--~~~~--~~~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~gH~~~~~---~~~~~~ 229 (243)
T 1ycd_A 157 IT--EKFR--DSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNK---KDIIRP 229 (243)
T ss_dssp EC--GGGT--TTTCCCTTCCCEEEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEEESSSSSCCCC---HHHHHH
T ss_pred cc--hhHH--HhccCcccCCCCEEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEecCCCCcCCch---HHHHHH
Confidence 00 0011 1122356688999999999999999999999999998641 112445666789976542 358899
Q ss_pred HHHHHHHHhC
Q 004735 706 QMVFFARVVG 715 (732)
Q Consensus 706 ~~~fl~~~l~ 715 (732)
+.+||++.++
T Consensus 230 i~~fl~~~~~ 239 (243)
T 1ycd_A 230 IVEQITSSLQ 239 (243)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhh
Confidence 9999999886
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=150.71 Aligned_cols=210 Identities=14% Similarity=0.136 Sum_probs=132.1
Q ss_pred CCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHH-CCCEEEEEcCCCC
Q 004735 457 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGS 535 (732)
Q Consensus 457 ~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~ 535 (732)
.+.+.+.+++.+...+..+.+++|.|++.. +.+++|+|+++||+.... .......+.++. .+..|+.+++++.
T Consensus 9 ~~~~~~~~~~~S~~~~~~~~~~vylP~~y~----~~~~yPvly~l~G~~~~~--~~~~~~~~~l~~~~~~ivV~v~~~~~ 82 (278)
T 2gzs_A 9 VFYHFSATSFDSVDGTRHYRVWTAVPNTTA----PASGYPILYMLDGNAVMD--RLDDELLKQLSEKTPPVIVAVGYQTN 82 (278)
T ss_dssp SSEEEEEEEEECTTSSCEEEEEEEEESSCC----CTTCEEEEEESSHHHHHH--HCCHHHHHHHTTSCCCEEEEEEESSS
T ss_pred CCCceEEEEEEcCCCCceEEEEEECCCCCC----CCCCCCEEEEeeChhHHH--HHHHHHHHHhccCCCeEEEEEcCCCC
Confidence 345667888888634788999999998742 256789887777753211 111223344554 6788888988753
Q ss_pred CCC-----ChhhHHhh-c-----------cCCCcccHHHHH-----HHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 536 TGY-----GREFRERL-L-----------GRWGIVDVNDCC-----SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 536 ~g~-----g~~~~~~~-~-----------~~~~~~~~~D~~-----~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
..+ +..+.... . ...+ ...++. +.+.++.++..+|++|++|+||||||++++.++.
T Consensus 83 ~~~~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~ 160 (278)
T 2gzs_A 83 LPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSG--GSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWL 160 (278)
T ss_dssp SSCCHHHHHHHTCCGGGGTTCSCC-----CCCC--CHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHH
T ss_pred CcCcccccccccCCCCccccccccccCcCCCcC--CHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHh
Confidence 211 11111110 0 0011 122222 2334455667788889999999999999998876
Q ss_pred CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCcc--------ChH
Q 004735 594 FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVV--------PPD 665 (732)
Q Consensus 594 ~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v--------~~~ 665 (732)
.|++|+++++.+|...+..... ...... ..+ . ..-..|+++.+|+.|... +..
T Consensus 161 ~p~~f~~~~~~s~~~~~~~~~~------~~~~~~----------~~~--~-~~~~~~i~l~~G~~d~~~~~~~~~~~~~~ 221 (278)
T 2gzs_A 161 SSSYFRSYYSASPSLGRGYDAL------LSRVTA----------VEP--L-QFCTKHLAIMEGSATQGDNRETHAVGVLS 221 (278)
T ss_dssp HCSSCSEEEEESGGGSTTHHHH------HHHHHT----------SCT--T-TTTTCEEEEEECCC-----------CHHH
T ss_pred CccccCeEEEeCcchhcCcchH------HHHHHH----------hhc--c-CCCCCcEEEEecCccccccccchhhhhHH
Confidence 6999999999999754331100 000000 000 0 112458999999999864 478
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 666 QARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
+++++++.|++.|+++++.++++++|++
T Consensus 222 ~~~~~~~~L~~~g~~~~~~~~~g~~H~~ 249 (278)
T 2gzs_A 222 KIHTTLTILKDKGVNAVFWDFPNLGHGP 249 (278)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred HHHHHHHHHHcCCCeeEEEEcCCCCccc
Confidence 9999999999999999999999999974
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-15 Score=152.00 Aligned_cols=216 Identities=10% Similarity=0.002 Sum_probs=136.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+.+ .|.||++||++... ..|...+..|++ +|.|+++|+||.+...... ....
T Consensus 16 ~g~~l~~~~~g~------------~~~vv~lHG~~~~~--~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~----~~~~ 76 (297)
T 2qvb_A 16 AGKRMAYIDEGK------------GDAIVFQHGNPTSS--YLWRNIMPHLEG-LGRLVACDLIGMGASDKLS----PSGP 76 (297)
T ss_dssp TTEEEEEEEESS------------SSEEEEECCTTCCG--GGGTTTGGGGTT-SSEEEEECCTTSTTSCCCS----SCST
T ss_pred CCEEEEEEecCC------------CCeEEEECCCCchH--HHHHHHHHHHhh-cCeEEEEcCCCCCCCCCCC----Cccc
Confidence 688888655521 37899999985443 345555566655 5999999999865533210 0011
Q ss_pred CcccHHHHHHHHHHHHhcCCCCC-CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH---HH-------HHhh--
Q 004735 551 GIVDVNDCCSCATFLVGSGKADE-KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---SM-------LRAE-- 616 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~-~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~---~~-------~~~~-- 616 (732)
.....++..+.+..+++.. +. +++.++|||+||.+++.++. +|++++++|+++|.... .. ....
T Consensus 77 ~~~~~~~~~~~~~~~l~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (297)
T 2qvb_A 77 DRYSYGEQRDFLFALWDAL--DLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFR 154 (297)
T ss_dssp TSSCHHHHHHHHHHHHHHT--TCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHHHHc--CCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCccCCCCChHHHHHHHHHh
Confidence 1134555555555555542 34 78999999999999999988 99999999999986531 00 0000
Q ss_pred ----------cchhhhhhhhhhc-C--Ch---------------------hhhhhc--------------CccccCCCCC
Q 004735 617 ----------THKFESRYIDNLV-G--SE---------------------KDYYEK--------------SPINFVDKFS 648 (732)
Q Consensus 617 ----------~~~~~~~~~~~~~-~--~~---------------------~~~~~~--------------sp~~~~~~i~ 648 (732)
...+...+..... . .. ..+... +....+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 234 (297)
T 2qvb_A 155 SPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWLEETD 234 (297)
T ss_dssp STTHHHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCC
T ss_pred cccchhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchhhHHHHHHHHhhccccc
Confidence 0000000000000 0 00 000000 1123345688
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+|+|+++|++|.+++++..+++.+.+. + +++++ ++||.+ ..+..+++.+.+.+||++..
T Consensus 235 ~P~lii~G~~D~~~~~~~~~~~~~~~~----~-~~~~~-~~gH~~-~~~~p~~~~~~i~~fl~~~~ 293 (297)
T 2qvb_A 235 MPKLFINAEPGAIITGRIRDYVRSWPN----Q-TEITV-PGVHFV-QEDSPEEIGAAIAQFVRRLR 293 (297)
T ss_dssp SCEEEEEEEECSSSCHHHHHHHHTSSS----E-EEEEE-EESSCG-GGTCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEecCCCCcCCHHHHHHHHHHcC----C-eEEEe-cCccch-hhhCHHHHHHHHHHHHHHHh
Confidence 999999999999999987777665443 4 88889 999975 34667888999999998764
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-14 Score=145.50 Aligned_cols=214 Identities=13% Similarity=0.100 Sum_probs=130.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++...- ..|.||++||.+.+ ...|...+..|++. |.|+++|.||.|.+... . . ...
T Consensus 17 ~g~~l~y~~~G------------~g~~lvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-~--~-~~~ 77 (294)
T 1ehy_A 17 PDVKIHYVREG------------AGPTLLLLHGWPGF--WWEWSKVIGPLAEH-YDVIVPDLRGFGDSEKP-D--L-NDL 77 (294)
T ss_dssp SSCEEEEEEEE------------CSSEEEEECCSSCC--GGGGHHHHHHHHTT-SEEEEECCTTSTTSCCC-C--T-TCG
T ss_pred CCEEEEEEEcC------------CCCEEEEECCCCcc--hhhHHHHHHHHhhc-CEEEecCCCCCCCCCCC-c--c-ccc
Confidence 68888765432 13679999998544 35667778888766 99999999987654321 0 0 000
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC-HH-H----------H---H
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD-LS-M----------L---R 614 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d-~~-~----------~---~ 614 (732)
....+++..+.+..++++.. .+++.|+|||+||.+++.++. +|++++++|++++... .. . + .
T Consensus 78 ~~~~~~~~a~dl~~ll~~l~--~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (294)
T 1ehy_A 78 SKYSLDKAADDQAALLDALG--IEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWYSQF 155 (294)
T ss_dssp GGGCHHHHHHHHHHHHHHTT--CCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHcC--CCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchhhccchhccCceEEEe
Confidence 01235555555555555533 468999999999999999988 9999999999986321 10 0 0 0
Q ss_pred h---------hc-----chhhhhhhhhhcC-----Ch---hhh-----------------hhc--Cccc-----cCCCCC
Q 004735 615 A---------ET-----HKFESRYIDNLVG-----SE---KDY-----------------YEK--SPIN-----FVDKFS 648 (732)
Q Consensus 615 ~---------~~-----~~~~~~~~~~~~~-----~~---~~~-----------------~~~--sp~~-----~~~~i~ 648 (732)
. .. ..+...++..... .+ +.| ... .... .+.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 235 (294)
T 1ehy_A 156 HQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSD 235 (294)
T ss_dssp TTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGSCBC
T ss_pred cCcchhHHHhccchhHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHhhhhhhcCCcccCcCC
Confidence 0 00 0000011110000 00 001 000 0001 123789
Q ss_pred CCEEEEEeCCCCccCh-HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 649 CPIILFQGLEDKVVPP-DQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~-~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
+|+|+++|++|..+|. .....+.+.+ .+.++++++++||.. ..+..+++.+.+.+||
T Consensus 236 ~P~Lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl 293 (294)
T 1ehy_A 236 LPVTMIWGLGDTCVPYAPLIEFVPKYY----SNYTMETIEDCGHFL-MVEKPEIAIDRIKTAF 293 (294)
T ss_dssp SCEEEEEECCSSCCTTHHHHHHHHHHB----SSEEEEEETTCCSCH-HHHCHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCCCcchHHHHHHHHHHc----CCCceEEeCCCCCCh-hhhCHHHHHHHHHHHh
Confidence 9999999999998884 4445544433 367999999999964 3456677777777775
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=137.29 Aligned_cols=168 Identities=16% Similarity=0.036 Sum_probs=118.1
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCC---EEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGW---AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~---~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
.|.||++||.+.. ...|..+.+.|.++|| .|+++|++|.+.... ...+++.+.+..++++.
T Consensus 3 ~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~~~~v~~~d~~g~g~s~~------------~~~~~~~~~~~~~~~~~-- 66 (181)
T 1isp_A 3 HNPVVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY------------NNGPVLSRFVQKVLDET-- 66 (181)
T ss_dssp CCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH------------HHHHHHHHHHHHHHHHH--
T ss_pred CCeEEEECCcCCC--HhHHHHHHHHHHHcCCCCccEEEEecCCCCCchh------------hhHHHHHHHHHHHHHHc--
Confidence 4789999998533 4556778889999998 699999997654322 12345555555555542
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-C--CCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCC
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-F--RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 648 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~ 648 (732)
+.+++.++|||+||.+++.++. + |++++++|+++|....... ..+ ... ....+
T Consensus 67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~------------~~~-------~~~-----~~~~~ 122 (181)
T 1isp_A 67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG------------KAL-------PGT-----DPNQK 122 (181)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS------------BCC-------CCS-----CTTCC
T ss_pred CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccc------------ccC-------CCC-----CCccC
Confidence 3568999999999999999987 6 8999999999987542110 000 000 11235
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
+|+|+++|++|.++|++.+. -...+++++++++|.+.... .++.+.+.+||.+.
T Consensus 123 ~p~l~i~G~~D~~v~~~~~~---------~~~~~~~~~~~~gH~~~~~~--~~~~~~i~~fl~~~ 176 (181)
T 1isp_A 123 ILYTSIYSSADMIVMNYLSR---------LDGARNVQIHGVGHIGLLYS--SQVNSLIKEGLNGG 176 (181)
T ss_dssp CEEEEEEETTCSSSCHHHHC---------CBTSEEEEESSCCTGGGGGC--HHHHHHHHHHHTTT
T ss_pred CcEEEEecCCCccccccccc---------CCCCcceeeccCchHhhccC--HHHHHHHHHHHhcc
Confidence 79999999999999987431 23468999999999764433 36777778777653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=166.22 Aligned_cols=240 Identities=11% Similarity=0.067 Sum_probs=162.8
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE-EEEcCCCC
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV-AIALNGQN 232 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~-~~d~~~~~ 232 (732)
+..+++.. ++.|+++++.+ +..++++... ......+.|| ||+.|++..+ ...|| ++++++++
T Consensus 308 G~~la~~~--~~~i~~~~~~~--~~~~~~~~~~---~~~~~~~~~s-dg~~l~~~s~---------~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 308 GDLIAFVS--RGQAFIQDVSG--TYVLKVPEPL---RIRYVRRGGD-TKVAFIHGTR---------EGDFLGIYDYRTGK 370 (1045)
T ss_dssp GGCEEEEE--TTEEEEECTTS--SBEEECSCCS---CEEEEEECSS-SEEEEEEEET---------TEEEEEEEETTTCC
T ss_pred CCEEEEEE--cCEEEEEcCCC--CceEEccCCC---cceEEeeeEc-CCCeEEEEEC---------CCceEEEEECCCCC
Confidence 34677775 56799999987 7777776551 2366788999 9999888765 16899 99999888
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.+.++........+.|||||++|++.+. ...|+++|++ +|+. ..+..+.. ..+..+.|||||
T Consensus 371 ---~~~l~~~~~~~~~~~~SpDG~~la~~~~--------~~~v~~~d~~-tg~~--~~~~~~~~----~~v~~~~~SpDG 432 (1045)
T 1k32_A 371 ---AEKFEENLGNVFAMGVDRNGKFAVVAND--------RFEIMTVDLE-TGKP--TVIERSRE----AMITDFTISDNS 432 (1045)
T ss_dssp ---EEECCCCCCSEEEEEECTTSSEEEEEET--------TSEEEEEETT-TCCE--EEEEECSS----SCCCCEEECTTS
T ss_pred ---ceEecCCccceeeeEECCCCCEEEEECC--------CCeEEEEECC-CCce--EEeccCCC----CCccceEECCCC
Confidence 7888744456678999999999998872 3469999998 7876 33343443 556789999999
Q ss_pred c-EEEEEecc------CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE-----
Q 004735 313 E-LFFVTDRK------NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR----- 380 (732)
Q Consensus 313 ~-l~~~~~~~------~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~----- 380 (732)
+ |++.+... .+...|+++|+++++.+.++........+.|++ +++.|++.+.+.+.
T Consensus 433 ~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~sp------------dG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 433 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA------------DSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECT------------TSCEEEEEESCCCCCEECS
T ss_pred CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcC------------CCCEEEEEecccCCcCcch
Confidence 9 87776642 245689999999998877775443334455665 78888887764321
Q ss_pred ----------EEEEEEECC------------------------CC--ceEEeccCCCceEEe-eEeCCEEEEE-------
Q 004735 381 ----------SYLGILDDF------------------------GH--SLSLLDIPFTDIDNI-TLGNDCLFVE------- 416 (732)
Q Consensus 381 ----------~~ly~~~~~------------------------~~--~~~~lt~~~~~v~~~-~~~~~~~~~~------- 416 (732)
..+|.+.+. +. ....++.+...+..+ ..+++.+++.
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~ 580 (1045)
T 1k32_A 501 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF 580 (1045)
T ss_dssp SSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSH
T ss_pred hccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcc
Confidence 133443332 11 122333333445555 3445555553
Q ss_pred ---EeCCCCCcEEEEEEcCCCcceeee
Q 004735 417 ---GASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 417 ---~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
.++...+..||++|+.+++.+.|.
T Consensus 581 ~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 581 AAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp HHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cccccccCCCceEEEEECCCCcEEEee
Confidence 134456778999999999876554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-14 Score=162.13 Aligned_cols=258 Identities=7% Similarity=-0.021 Sum_probs=169.2
Q ss_pred EEECCEEEEEeCCCC----eEEEEeC---CCCCC--CceecCCCC---CCCC-eEeeceeec-CCCCEEEEEEeccCCCC
Q 004735 151 RIFGDTVIFSNYKDQ----RLYKHSI---DSKDS--SPLPITPDY---GEPL-VSYADGIFD-PRFNRYVTVREDRRQDA 216 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~----~l~~~d~---~~~~~--~~~~lt~~~---~~~~-~~~~~~~~s-pdG~~l~~~~~~~~~~~ 216 (732)
...++.++|.....+ .+|+.+. .+ + ..+.|.... .... .....++|| |||++|+|+.+..+.+
T Consensus 123 ~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~--~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~- 199 (751)
T 2xe4_A 123 YVYGKYRYYTREVKGKPYKIYCRVFTDKEPG--DVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNE- 199 (751)
T ss_dssp EEETTEEEEEEECTTCCSCEEEEEETTSCTT--CTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSS-
T ss_pred eEECCEEEEEEECCCCceeEEEEEcCCCCCC--CCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCc-
Confidence 357888888875443 4778876 43 4 444443321 0112 256778999 9999999998755433
Q ss_pred CCceeEEEEEEcCCC-CccccEEcccC-CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecC
Q 004735 217 LNSTTEIVAIALNGQ-NIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG 294 (732)
Q Consensus 217 ~~~~~~l~~~d~~~~-~~~~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~ 294 (732)
..+||++|+++| + . +... ......+.|||||++|+|++.+..+ ...+||++++. ++......++.+
T Consensus 200 ---~~~l~v~dl~~g~~---~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~---~~~~v~~~~lg-t~~~~~~lv~~~ 267 (751)
T 2xe4_A 200 ---VYTIEFKRISDPSQ---T--IADKVSGTNGEIVWGPDHTSLFYVTKDETL---RENKVWRHVMG-KLQSEDVCLYEE 267 (751)
T ss_dssp ---CEEEEEEETTCTTC---C--CCCCEEEECSCCEECSSTTEEEEEEECTTC---CEEEEEEEETT-SCGGGCEEEEEC
T ss_pred ---eEEEEEEECCCCCE---e--CCccccCceeeEEEecCCCEEEEEEECCCC---CCCEEEEEECC-CCchhcEEEEec
Confidence 368999999998 5 2 1111 1124579999999999999865533 23579999987 554322334433
Q ss_pred CCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC--eE--EEecccccccCCCceeecccceeeeeecCCCC
Q 004735 295 FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EV--LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKN 369 (732)
Q Consensus 295 ~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g--~~--~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 369 (732)
.+. .....+.|||||+ |++.+.. .+...||++|++++ +. +.|+... ..+.|++. |. +++
T Consensus 268 ~~~---~~~~~~~~SpDg~~l~~~~~~-~~~~~l~~~d~~~~~~~~~~~~l~~~~---~~~~~s~~-----~~----~g~ 331 (751)
T 2xe4_A 268 HNP---LFSAFMYKAADTNTLCIGSQS-PETAEVHLLDLRKGNAHNTLEIVRPRE---KGVRYDVQ-----MH----GTS 331 (751)
T ss_dssp CCT---TCEEEEEECTTSSEEEEEEEC-SSCEEEEEEESSSCTTCCCEEESSCCC---TTCCEEEE-----EE----TTT
T ss_pred CCC---ceEEEEEECCCCCEEEEEecC-CCCceEEEEECCCCCCCceeEEeecCC---CCceEEEe-----ee----eCC
Confidence 321 2345789999999 8888776 56788999999875 45 6666432 34556541 11 588
Q ss_pred EEEEEEEEC--CEEEEEEEECCC-CceEE-eccCCC--ceEEeeEeCCEEEEEEeCCCCCcEEEEEEc-------CCCc-
Q 004735 370 LIACSYRQN--GRSYLGILDDFG-HSLSL-LDIPFT--DIDNITLGNDCLFVEGASGVEPSSVAKVTL-------DDHK- 435 (732)
Q Consensus 370 ~l~~~s~~~--g~~~ly~~~~~~-~~~~~-lt~~~~--~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl-------~~~~- 435 (732)
.|+|.++++ +..+||++++++ ++++. |....+ .+..+...++.+++. ...+....|+++++ ++++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~-~~~~g~~~l~~~dl~~~~~~~~~g~~ 410 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVA-GRRAGLTRIWTMMADSQDGVFKAGTG 410 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEE-EEETTEEEEEEEECCTTTSCCCTTTC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEE-EEeCCEEEEEEEecccccccccCCcc
Confidence 999999876 678999999986 45555 544433 344554455655544 45566778999996 5666
Q ss_pred ceeee
Q 004735 436 LKAVD 440 (732)
Q Consensus 436 ~~~lt 440 (732)
.++|+
T Consensus 411 ~~~l~ 415 (751)
T 2xe4_A 411 LREVV 415 (751)
T ss_dssp CEECC
T ss_pred ceEEC
Confidence 66654
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.7e-15 Score=147.23 Aligned_cols=198 Identities=13% Similarity=0.094 Sum_probs=120.4
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.. ...|...+..|++.||.|+++|+||.+..... . ..++++..+.+..+++....+..
T Consensus 16 ~~~vvllHG~~~~--~~~w~~~~~~L~~~~~~vi~~Dl~GhG~S~~~---~------~~~~~~~a~~l~~~l~~l~~~~~ 84 (264)
T 1r3d_A 16 TPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPGHGTNPER---H------CDNFAEAVEMIEQTVQAHVTSEV 84 (264)
T ss_dssp BCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCTTS
T ss_pred CCcEEEEcCCCCC--HHHHHHHHHHhcccCceEEEecCCCCCCCCCC---C------ccCHHHHHHHHHHHHHHhCcCCC
Confidence 4889999998433 45677788888768999999999987654321 1 02245555555555555333322
Q ss_pred cEEEEEcChHHHHHHH---HHh-CCCcceEEEeecCcCCHH---H----------HHhh-----cchhhhhhhh-hhcC-
Q 004735 575 RLCITGGSAGGYTTLA---ALA-FRDTFKAGASLYGVADLS---M----------LRAE-----THKFESRYID-NLVG- 630 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~---~~~-~p~~~~a~v~~~~~~d~~---~----------~~~~-----~~~~~~~~~~-~~~~- 630 (732)
++.|+||||||.+++. ++. +|++++++|+.++..... . +... .......+.. ..+.
T Consensus 85 p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (264)
T 1r3d_A 85 PVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQQAVFSS 164 (264)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTTSGGGTT
T ss_pred ceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHHHHHhhhhhhhc
Confidence 3999999999999999 776 899999999987643210 0 0000 0000000000 0000
Q ss_pred ----------------Chh----hhhh------cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEE
Q 004735 631 ----------------SEK----DYYE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684 (732)
Q Consensus 631 ----------------~~~----~~~~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (732)
... .+.. .+....+.++++|+|+++|++|..++ .+.+.+. .+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~~-----~~~~ 234 (264)
T 1r3d_A 165 LNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-----QLAESSG-----LSYS 234 (264)
T ss_dssp CCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-----HHHHHHC-----SEEE
T ss_pred cCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchHH-----HHHHHhC-----CcEE
Confidence 000 0000 01112345788999999999997542 2333331 4799
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 685 EYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 685 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+++++||.. ..+..+++.+.+.+|+.++.
T Consensus 235 ~i~~~gH~~-~~e~p~~~~~~i~~fl~~~~ 263 (264)
T 1r3d_A 235 QVAQAGHNV-HHEQPQAFAKIVQAMIHSII 263 (264)
T ss_dssp EETTCCSCH-HHHCHHHHHHHHHHHHHHHC
T ss_pred EcCCCCCch-hhcCHHHHHHHHHHHHHHhc
Confidence 999999965 33567788899999998753
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=149.86 Aligned_cols=217 Identities=16% Similarity=0.127 Sum_probs=138.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++...-+ ++.|.||++||++.+. ..|...+..|++ +|.|+++|+||.|.+... .
T Consensus 15 ~g~~l~y~~~G~----------g~~~pvvllHG~~~~~--~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~-----~--- 73 (316)
T 3afi_E 15 LGSSMAYRETGA----------QDAPVVLFLHGNPTSS--HIWRNILPLVSP-VAHCIAPDLIGFGQSGKP-----D--- 73 (316)
T ss_dssp TTEEEEEEEESC----------TTSCEEEEECCTTCCG--GGGTTTHHHHTT-TSEEEEECCTTSTTSCCC-----S---
T ss_pred CCEEEEEEEeCC----------CCCCeEEEECCCCCch--HHHHHHHHHHhh-CCEEEEECCCCCCCCCCC-----C---
Confidence 687887655422 1125899999986543 455666777765 499999999976654321 1
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC---HHHHH------------
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSMLR------------ 614 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d---~~~~~------------ 614 (732)
....+++..+.+..+++... .+++.|+|||+||.+++.++. +|++++++|++++... +....
T Consensus 74 ~~~~~~~~a~dl~~ll~~l~--~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
T 3afi_E 74 IAYRFFDHVRYLDAFIEQRG--VTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEVAEEQDHAE 151 (316)
T ss_dssp SCCCHHHHHHHHHHHHHHTT--CCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTCCCCGGGHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC--CCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccchhhccccccch
Confidence 11345666666666665533 468999999999999999998 9999999999876321 11000
Q ss_pred ------hh--cch-----------hhhhhhhh-hcC--Ch---hhhh-----------------hcCc------------
Q 004735 615 ------AE--THK-----------FESRYIDN-LVG--SE---KDYY-----------------EKSP------------ 640 (732)
Q Consensus 615 ------~~--~~~-----------~~~~~~~~-~~~--~~---~~~~-----------------~~sp------------ 640 (732)
.. ... +...++.. ... .. +.|. ....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (316)
T 3afi_E 152 AARAVFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAGEPADVYEALQ 231 (316)
T ss_dssp HHHHHHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBTTBSHHHHHHHH
T ss_pred hHHHHHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhccccccchhhhhHHH
Confidence 00 000 00000000 000 00 0000 0000
Q ss_pred --cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 641 --INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 641 --~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
...+.++++|+|+++|++|.+++++.++.+.+.+. +.++++++++||.. ..+..+++.+.+.+||.+...
T Consensus 232 ~~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~GH~~-~~e~p~~~~~~i~~fl~~~~~ 303 (316)
T 3afi_E 232 SAHAALAASSYPKLLFTGEPGALVSPEFAERFAASLT----RCALIRLGAGLHYL-QEDHADAIGRSVAGWIAGIEA 303 (316)
T ss_dssp HHHHHHHHCCSCEEEEEEEECSSSCHHHHHHHHHHSS----SEEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCeEEEecCCCCccCHHHHHHHHHhCC----CCeEEEcCCCCCCc-hhhCHHHHHHHHHHHHhhcCC
Confidence 01123578999999999999999988887777654 56999999999964 346678888999999987654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-13 Score=140.59 Aligned_cols=282 Identities=12% Similarity=0.025 Sum_probs=161.6
Q ss_pred CccCceEEcC-CCcEEEEeecCCC-CCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTE-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~ 166 (732)
..+.++.++| ++.+|........ ...-.++.++..++ +....++... ......++.+++.+++....++.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~-------~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHNDL-------KPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEESS-------CCCSEEEETTTTEEEEEETTTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEecCC-------CcceEEECCCCCEEEEEecCCCE
Confidence 3567889999 8888777643110 01235667776644 3322222110 01122344445578888877789
Q ss_pred EEEEeCCCCCCCc-eecCCCCCC-----CCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc
Q 004735 167 LYKHSIDSKDSSP-LPITPDYGE-----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (732)
Q Consensus 167 l~~~d~~~~~~~~-~~lt~~~~~-----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt 240 (732)
|+++|+++ ++. ..+...... .......+.|+|||+++++..... ...|+++|+++++ .....
T Consensus 113 v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------~~~i~~~d~~~~~---~~~~~ 180 (353)
T 3vgz_A 113 VTAIDAKT--GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-------ESVIWVVDGGNIK---LKTAI 180 (353)
T ss_dssp EEEEETTT--CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-------SCEEEEEETTTTE---EEEEE
T ss_pred EEEEeCCC--CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-------CceEEEEcCCCCc---eEEEe
Confidence 99999987 554 333322100 011245678999999866654322 2589999999887 44433
Q ss_pred c-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEe
Q 004735 241 S-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 319 (732)
Q Consensus 241 ~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~ 319 (732)
. .........|||||++|+.... ...|+++|+. +++...........+. ..+..+.|+|||+.+|.++
T Consensus 181 ~~~~~~~~~~~~s~dg~~l~~~~~--------~~~i~~~d~~-~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 181 QNTGKMSTGLALDSEGKRLYTTNA--------DGELITIDTA-DNKILSRKKLLDDGKE--HFFINISLDTARQRAFITD 249 (353)
T ss_dssp CCCCTTCCCCEEETTTTEEEEECT--------TSEEEEEETT-TTEEEEEEECCCSSSC--CCEEEEEEETTTTEEEEEE
T ss_pred cCCCCccceEEECCCCCEEEEEcC--------CCeEEEEECC-CCeEEEEEEcCCCCCC--cccceEEECCCCCEEEEEe
Confidence 3 3333566899999998876641 3469999998 7765332222111101 3344579999999444554
Q ss_pred ccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccC
Q 004735 320 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 399 (732)
Q Consensus 320 ~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~ 399 (732)
. +...|+++|+.+++.......... . .+.|.+ +++.+|++...++ .|+++|..+++.......
T Consensus 250 ~--~~~~v~~~d~~~~~~~~~~~~~~~-~---------~~~~s~---dg~~l~v~~~~~~--~v~~~d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 250 S--KAAEVLVVDTRNGNILAKVAAPES-L---------AVLFNP---ARNEAYVTHRQAG--KVSVIDAKSYKVVKTFDT 312 (353)
T ss_dssp S--SSSEEEEEETTTCCEEEEEECSSC-C---------CEEEET---TTTEEEEEETTTT--EEEEEETTTTEEEEEEEC
T ss_pred C--CCCEEEEEECCCCcEEEEEEcCCC-c---------eEEECC---CCCEEEEEECCCC--eEEEEECCCCeEEEEEec
Confidence 4 345688899988876544332111 1 233433 7777777654444 577779888776543332
Q ss_pred CCceEEe-eEeCCEEEEEEe
Q 004735 400 FTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 400 ~~~v~~~-~~~~~~~~~~~~ 418 (732)
......+ ..++++.+|++.
T Consensus 313 ~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 313 PTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp CSEEEEEEECTTSCEEEEEE
T ss_pred CCCCCeEEEcCCCCEEEEEE
Confidence 3344444 344444444443
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=146.23 Aligned_cols=213 Identities=9% Similarity=0.022 Sum_probs=128.9
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+.++ ..|.||++||.+... ..|...+..|++ +|.|+++|+||.+..... .
T Consensus 7 ~g~~l~~~~~g~~----------~~~~vv~lHG~~~~~--~~~~~~~~~L~~-~~~v~~~D~~G~G~S~~~-----~--- 65 (264)
T 3ibt_A 7 NGTLMTYSESGDP----------HAPTLFLLSGWCQDH--RLFKNLAPLLAR-DFHVICPDWRGHDAKQTD-----S--- 65 (264)
T ss_dssp TTEECCEEEESCS----------SSCEEEEECCTTCCG--GGGTTHHHHHTT-TSEEEEECCTTCSTTCCC-----C---
T ss_pred CCeEEEEEEeCCC----------CCCeEEEEcCCCCcH--hHHHHHHHHHHh-cCcEEEEccccCCCCCCC-----c---
Confidence 6777776555432 247999999985443 456667777754 599999999976554322 1
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCCHHH-HHh---h--------
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADLSM-LRA---E-------- 616 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d~~~-~~~---~-------- 616 (732)
.....++..+.+..+++.. +.+++.++|||+||.+++.++. + |++++++|++++...... +.. .
T Consensus 66 ~~~~~~~~~~~~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (264)
T 3ibt_A 66 GDFDSQTLAQDLLAFIDAK--GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGFWQQLAEGQHPTEYV 143 (264)
T ss_dssp SCCCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSSCCHHHHHHHHHTTCTTTHH
T ss_pred cccCHHHHHHHHHHHHHhc--CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCCcChhhcchhhcccChhhHH
Confidence 1233555555555555543 3458999999999999999998 8 999999999987541100 000 0
Q ss_pred --cchhhhhhh-------------hhhcC-Chhhhh------------hcCccccCCCCCCCEEEEEeCCCC--ccChHH
Q 004735 617 --THKFESRYI-------------DNLVG-SEKDYY------------EKSPINFVDKFSCPIILFQGLEDK--VVPPDQ 666 (732)
Q Consensus 617 --~~~~~~~~~-------------~~~~~-~~~~~~------------~~sp~~~~~~i~~P~Lii~G~~D~--~v~~~~ 666 (732)
.......+. ..+.. ....+. ..++...+.++++|+|+++|..|. .+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~~~~~~~~~~~ 223 (264)
T 3ibt_A 144 AGRQSFFDEWAETTDNADVLNHLRNEMPWFHGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIYSQPLSQDYRQL 223 (264)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEECCSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHhhhhccchhHHHHHHHhccchhhccchhhcccccCCCeEEEEecCCccchhhHHH
Confidence 000000000 00000 001010 011224567889999999764443 333444
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 667 ARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 667 ~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
...+.+.+ .+.++++++++||.. ..+..+++.+.+.+||+
T Consensus 224 ~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 224 QLEFAAGH----SWFHPRHIPGRTHFP-SLENPVAVAQAIREFLQ 263 (264)
T ss_dssp HHHHHHHC----TTEEEEECCCSSSCH-HHHCHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCceEEEcCCCCCcc-hhhCHHHHHHHHHHHHh
Confidence 44444433 367999999999964 33566677777777764
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=152.65 Aligned_cols=201 Identities=15% Similarity=0.048 Sum_probs=127.8
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHC--CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
...|.||++||.+.. ...|...++.|+++ ||.|+++|+||.+...... ...++|+.+.+..+.+..
T Consensus 34 ~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~s~~~~---------~~~~~~~~~~l~~~~~~~- 101 (302)
T 1pja_A 34 ASYKPVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFDGRESLRPL---------WEQVQGFREAVVPIMAKA- 101 (302)
T ss_dssp -CCCCEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSCSGGGGSCH---------HHHHHHHHHHHHHHHHHC-
T ss_pred CCCCeEEEECCCCCC--hhHHHHHHHHHHhcCCCcEEEEeccCCCccchhhH---------HHHHHHHHHHHHHHhhcC-
Confidence 345789999997444 34577888999998 9999999999764322111 023667777777776654
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCC-cceEEEeecCcCCHH----HHHh-hcchhhhh--------------hhhhhc
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRD-TFKAGASLYGVADLS----MLRA-ETHKFESR--------------YIDNLV 629 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~-~~~a~v~~~~~~d~~----~~~~-~~~~~~~~--------------~~~~~~ 629 (732)
.+++.++|||+||.+++.++. +|+ +++++|++++..... .... ........ .....+
T Consensus 102 --~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (302)
T 1pja_A 102 --PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYW 179 (302)
T ss_dssp --TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGGGSTGGGGB
T ss_pred --CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHHHhhhhhcc
Confidence 478999999999999999998 998 799999998754211 0000 00000000 000000
Q ss_pred CCh---hhhhhcC-----------------ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHH----------------
Q 004735 630 GSE---KDYYEKS-----------------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA---------------- 673 (732)
Q Consensus 630 ~~~---~~~~~~s-----------------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~---------------- 673 (732)
.++ ..+.... -...+.+++ |+|+++|++|.++++..+..+.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (302)
T 1pja_A 180 HDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQLVYL 258 (302)
T ss_dssp CCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSSSGGGGGTCEECTTCCEECGGGSHHHH
T ss_pred cChhhhhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccchhHhhHhhhcCCcccccchhhhhhhh
Confidence 000 1110000 022356788 999999999999998877665322
Q ss_pred --------HHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 674 --------LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 674 --------l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
+...+ ++++++++++||... .+..+.+.+.+.+|+
T Consensus 259 ~~~~~~~~l~~~~-~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl 301 (302)
T 1pja_A 259 RDSFGLKTLLARG-AIVRCPMAGISHTAW-HSNRTLYETCIEPWL 301 (302)
T ss_dssp TTTTSHHHHHHTT-CEEEEECSSCCTTTT-TSCHHHHHHHTGGGC
T ss_pred hhhhchhhHhhcC-CeEEEEecCcccccc-ccCHHHHHHHHHHhc
Confidence 22221 489999999999753 356667777766664
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-14 Score=170.38 Aligned_cols=299 Identities=14% Similarity=0.074 Sum_probs=191.7
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC---
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--- 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--- 164 (732)
.....++||| |+.++|...++.+.+...|+.++..+| +.+.++.....++.+.+.+...+|++++. ++|+...+
T Consensus 53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~ 130 (1045)
T 1k32_A 53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG-EIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPF 130 (1045)
T ss_dssp SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT-EEEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSSS
T ss_pred CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC-CeEEcccCCCcccccccccccccCCCCCE-EEEEECCcCCC
Confidence 4567899999 999999987643346667888877644 56666654423323333333333444444 88877643
Q ss_pred ---CeEEEEeCCCCCCCceecCCCCCCC----------------------------------------------CeEeec
Q 004735 165 ---QRLYKHSIDSKDSSPLPITPDYGEP----------------------------------------------LVSYAD 195 (732)
Q Consensus 165 ---~~l~~~d~~~~~~~~~~lt~~~~~~----------------------------------------------~~~~~~ 195 (732)
.+||++++++ +..++|+...... ......
T Consensus 131 ~~~~~l~~~~~~~--g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~ 208 (1045)
T 1k32_A 131 SSMTCLYRVENDG--INFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSS 208 (1045)
T ss_dssp TTCCEEEEEEGGG--TEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEE
T ss_pred cccceEEEEECCC--CCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccc
Confidence 4799999987 7777776542100 001123
Q ss_pred eeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEE
Q 004735 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 275 (732)
Q Consensus 196 ~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l 275 (732)
+.|++| +++|+....+ ..+||.++++++. .++++.... ...+.|||||++|+|.. ...|
T Consensus 209 ~~~s~d--~l~~~~~~dg------~~~l~~~~~~g~~---~~~l~~~~~-~~~~~~SpDG~~la~~~---------~~~i 267 (1045)
T 1k32_A 209 PVIVGH--RIYFITDIDG------FGQIYSTDLDGKD---LRKHTSFTD-YYPRHLNTDGRRILFSK---------GGSI 267 (1045)
T ss_dssp EEEETT--EEEEEECTTS------SCEEEEEETTSCS---CEECCCCCS-SCEEEEEESSSCEEEEE---------TTEE
T ss_pred eEEeCC--EEEEEEeccC------ceEEEEEeCCCCc---ceEecCCCC-cceeeEcCCCCEEEEEe---------CCEE
Confidence 445555 5566554321 3689999998887 788876554 34579999999999975 2459
Q ss_pred EEEEecCCCceeeeEEecCCCC----C---ccccCcCceeC-CCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccccc-
Q 004735 276 WVGYISENGDVYKRVCVAGFDP----T---IVESPTEPKWS-SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA- 345 (732)
Q Consensus 276 ~v~d~~~~g~~~~~~~~~~~~~----~---~~~~~~~~~ws-pDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~- 345 (732)
++++++ .+.+. .+..... . ....+..+.|| |||+ |++.+ . ..|+.++..+++.+.++....
T Consensus 268 ~~~d~~-~~~l~---~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~----~~i~~~~~~~~~~~~~~~~~~~ 338 (1045)
T 1k32_A 268 YIFNPD-TEKIE---KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-R----GQAFIQDVSGTYVLKVPEPLRI 338 (1045)
T ss_dssp EEECTT-TCCEE---ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-T----TEEEEECTTSSBEEECSCCSCE
T ss_pred EEecCC-ceEee---eeccCcccccccccccccccceeeecCCCCCEEEEEE-c----CEEEEEcCCCCceEEccCCCcc
Confidence 999885 44442 2222100 0 00246788999 9999 88776 2 358889998888777764332
Q ss_pred ccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE-EEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCC
Q 004735 346 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG-ILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEP 423 (732)
Q Consensus 346 ~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly-~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~ 423 (732)
....+.|+ +++.|++.++ ..+|| +++.++++.+.++.....+..+ .+++++.+++.+..
T Consensus 339 ~~~~~~~s-------------dg~~l~~~s~---~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~--- 399 (1045)
T 1k32_A 339 RYVRRGGD-------------TKVAFIHGTR---EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR--- 399 (1045)
T ss_dssp EEEEECSS-------------SEEEEEEEET---TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETT---
T ss_pred eEEeeeEc-------------CCCeEEEEEC---CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCC---
Confidence 33344444 4566776664 46899 8999999988888544566666 44555555555443
Q ss_pred cEEEEEEcCCCcceeee
Q 004735 424 SSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 424 ~~ly~~dl~~~~~~~lt 440 (732)
..|+++|+++++.+.+.
T Consensus 400 ~~v~~~d~~tg~~~~~~ 416 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIE 416 (1045)
T ss_dssp SEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCceEEec
Confidence 48999999998876665
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=149.95 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=121.7
Q ss_pred CCCEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEcC----CCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc
Q 004735 494 KPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNY----GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 568 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~----rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 568 (732)
..|+||++||.+.+...+. +...+..| +.||.|+++|+ ||.+ .+... ...+|+.+.++++.++
T Consensus 37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G---~S~~~--------~~~~d~~~~~~~l~~~ 104 (335)
T 2q0x_A 37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIGSG---PQDHA--------HDAEDVDDLIGILLRD 104 (335)
T ss_dssp SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTTSC---SCCHH--------HHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCCCC---Ccccc--------CcHHHHHHHHHHHHHH
Confidence 3588999999754433332 34566666 78999999964 6544 33211 1267888888888775
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcCCHH----------HHHhhcchhh-----hhhhh--hh
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVADLS----------MLRAETHKFE-----SRYID--NL 628 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~d~~----------~~~~~~~~~~-----~~~~~--~~ 628 (732)
.+.+++.|+||||||.+++.++. +|++++++|+.+|..+.. .......... ...+. ..
T Consensus 105 --l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (335)
T 2q0x_A 105 --HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPENPLFTPEGCAARKEHVEKLMAEGRGEDSLAMLKH 182 (335)
T ss_dssp --SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTSTTTSHHHHHHHHHHHHHHHHHTCTTCGGGGTTT
T ss_pred --cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchhcccCHHHHHHHHHHHHHHhhccCccccccchhh
Confidence 34579999999999999998876 699999999998865321 0000000000 00000 00
Q ss_pred cC---Chhh-------------hh------hcCccccCCCCCCCEEEEEeCCCCccChHH-HHHHHHHHHhCCCCEE---
Q 004735 629 VG---SEKD-------------YY------EKSPINFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGLPVA--- 682 (732)
Q Consensus 629 ~~---~~~~-------------~~------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g~~~~--- 682 (732)
.. .... +. ..+....+.++++|+|+++|++|.++|+.. ...+.+.+.+.-...+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~vp~~~~~~~~~~~l~~~~~~~~~~~ 262 (335)
T 2q0x_A 183 YDIPITPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQYKPSDEEVGTVLEGVRDHTGCNRVTV 262 (335)
T ss_dssp CSSCCCHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTCCCCHHHHHHHHHHHHHHSSSSCEEE
T ss_pred ccCccCHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCCCChhhhHHHHHHHHHHhcCcccccc
Confidence 00 0000 00 001123467889999999999999999864 2233334433212223
Q ss_pred -----E-----EEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 683 -----L-----VEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 683 -----~-----~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+ ++++++|| +..+.+.+||++..
T Consensus 263 ~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~~ 295 (335)
T 2q0x_A 263 SYFNDTCDELRRVLKAAES---------EHVAAILQFLADED 295 (335)
T ss_dssp EECCCEECTTSCEEECCHH---------HHHHHHHHHHHHHH
T ss_pred ccccchhhhhhcccCCCCC---------HHHHHHHHHHHhhh
Confidence 5 78999999 23778888987654
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=146.24 Aligned_cols=219 Identities=11% Similarity=0.057 Sum_probs=128.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-----HHHHHHHCCCEEEEEcCCCCCCCChhhHHh
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-----SIQYWTSRGWAFVDVNYGGSTGYGREFRER 545 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-----~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~ 545 (732)
+|.++++..+-+. ....|.||++||.+..... .|.. .+..|++ +|.|+++|+||.+.......
T Consensus 19 ~~~~l~y~~~G~~--------~~~~p~vvllHG~~~~~~~-~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~s~~~~~-- 86 (286)
T 2qmq_A 19 PYGSVTFTVYGTP--------KPKRPAIFTYHDVGLNYKS-CFQPLFRFGDMQEIIQ-NFVRVHVDAPGMEEGAPVFP-- 86 (286)
T ss_dssp TTEEEEEEEESCC--------CTTCCEEEEECCTTCCHHH-HHHHHHTSHHHHHHHT-TSCEEEEECTTTSTTCCCCC--
T ss_pred CCeEEEEEeccCC--------CCCCCeEEEeCCCCCCchh-hhhhhhhhchhHHHhc-CCCEEEecCCCCCCCCCCCC--
Confidence 6888887766442 1235899999998544321 1221 5566655 69999999998643211100
Q ss_pred hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh--------
Q 004735 546 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-------- 616 (732)
Q Consensus 546 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~-------- 616 (732)
........++..+.+..+++.. +.+++.|+|||+||.+++.++. +|++++++|++++......+...
T Consensus 87 --~~~~~~~~~~~~~~l~~~l~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 162 (286)
T 2qmq_A 87 --LGYQYPSLDQLADMIPCILQYL--NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGL 162 (286)
T ss_dssp --TTCCCCCHHHHHHTHHHHHHHH--TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCHHHHHHHHHHHT
T ss_pred --CCCCccCHHHHHHHHHHHHHHh--CCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccchhhhhhhhhccc
Confidence 0111013444444444444432 3358999999999999999988 99999999999986522111000
Q ss_pred cchhhhhhhhhhc--------------------C--Ch---hhhh----hcCc----cccCCCCCCCEEEEEeCCCCccC
Q 004735 617 THKFESRYIDNLV--------------------G--SE---KDYY----EKSP----INFVDKFSCPIILFQGLEDKVVP 663 (732)
Q Consensus 617 ~~~~~~~~~~~~~--------------------~--~~---~~~~----~~sp----~~~~~~i~~P~Lii~G~~D~~v~ 663 (732)
........+...+ . .. ..+. .... ...+.++++|+|+++|++|.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~ 242 (286)
T 2qmq_A 163 TSSIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHED 242 (286)
T ss_dssp TSCHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEEEEEETTSTTHH
T ss_pred cccchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEEEEecCCCcccc
Confidence 0000000000000 0 00 0010 0011 12356788999999999999886
Q ss_pred hHHHHHHHHHHHhCCC-CEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 664 PDQARKIYKALKENGL-PVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 664 ~~~~~~~~~~l~~~g~-~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
.. .+.+++... ++++++++++||.+. .+..+++.+.+.+||+
T Consensus 243 -~~----~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 243 -AV----VECNSKLDPTQTSFLKMADSGGQPQ-LTQPGKLTEAFKYFLQ 285 (286)
T ss_dssp -HH----HHHHHHSCGGGEEEEEETTCTTCHH-HHCHHHHHHHHHHHHC
T ss_pred -HH----HHHHHHhcCCCceEEEeCCCCCccc-ccChHHHHHHHHHHhc
Confidence 22 333444433 689999999999653 2456777777887774
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.6e-15 Score=147.80 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=120.5
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcE
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 576 (732)
.||++||.+.. ...|...+..|+ .+|.|+++|+||.+..... ...++++ .++.+.+. ++ +++
T Consensus 15 ~vvllHG~~~~--~~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~---------~~~~~~~---~~~~l~~~--l~-~~~ 76 (258)
T 1m33_A 15 HLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPGFGRSRGF---------GALSLAD---MAEAVLQQ--AP-DKA 76 (258)
T ss_dssp EEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHH---HHHHHHTT--SC-SSE
T ss_pred eEEEECCCCCC--hHHHHHHHHHhh-cCcEEEEeeCCCCCCCCCC---------CCcCHHH---HHHHHHHH--hC-CCe
Confidence 89999997443 345666677775 5899999999976543322 1123344 34445444 33 789
Q ss_pred EEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH--------------HHHHh----hcchhhhhhhhh-hcC------
Q 004735 577 CITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL--------------SMLRA----ETHKFESRYIDN-LVG------ 630 (732)
Q Consensus 577 ~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~--------------~~~~~----~~~~~~~~~~~~-~~~------ 630 (732)
.|+|||+||.+++.++. +|++++++|++++.... ..+.. ........+... ..+
T Consensus 77 ~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 1m33_A 77 IWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETARQ 156 (258)
T ss_dssp EEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTHHH
T ss_pred EEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCCccchh
Confidence 99999999999999988 99999999998754211 00000 000000000000 000
Q ss_pred ---------------Chh-------hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC
Q 004735 631 ---------------SEK-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 688 (732)
Q Consensus 631 ---------------~~~-------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (732)
... .+...+....+.++++|+|+++|++|.++++..++.+.+.+ .+.+++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~ 232 (258)
T 1m33_A 157 DARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW----PHSESYIFAK 232 (258)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTC----TTCEEEEETT
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCCHHHHHHHHHhC----ccceEEEeCC
Confidence 000 01111222345678999999999999999987666554433 3468999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHH
Q 004735 689 EQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 689 ~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+||... .+..+++.+.+.+|+.+
T Consensus 233 ~gH~~~-~e~p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 233 AAHAPF-ISHPAEFCHLLVALKQR 255 (258)
T ss_dssp CCSCHH-HHSHHHHHHHHHHHHTT
T ss_pred CCCCcc-ccCHHHHHHHHHHHHHh
Confidence 999643 24567777888888753
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=152.55 Aligned_cols=200 Identities=11% Similarity=0.060 Sum_probs=124.4
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|+||++||++.......|...+..|+ .||.|+++|+||.+..... ......++++.+.+..++++.. .+
T Consensus 41 ~p~vv~lHG~G~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~l~~~~--~~ 110 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTADNFANIIDKLP-DSIGILTIDAPNSGYSPVS-------NQANVGLRDWVNAILMIFEHFK--FQ 110 (292)
T ss_dssp SSEEEEECCSSSCCHHHHTHHHHTTSC-TTSEEEEECCTTSTTSCCC-------CCTTCCHHHHHHHHHHHHHHSC--CS
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHHh-hcCeEEEEcCCCCCCCCCC-------CcccccHHHHHHHHHHHHHHhC--CC
Confidence 389999997533444445666666665 6999999999976543311 0112346777777776666533 45
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH--------------Hhhcch------hhhhhhhhhcCC--
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML--------------RAETHK------FESRYIDNLVGS-- 631 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~--------------~~~~~~------~~~~~~~~~~~~-- 631 (732)
++.|+|||+||.+++.++. +|++++++|+++|......+ ...... +....+...+..
T Consensus 111 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (292)
T 3l80_A 111 SYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQ 190 (292)
T ss_dssp EEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCCCHHHHHHCTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHH
T ss_pred CeEEEEEchhHHHHHHHHHhCchheeeEEEECCCCcchhhhccccccchhHHHHHHHHhccCchhhhHhhccccccCHHH
Confidence 8999999999999999988 99999999999843211100 000000 000000000000
Q ss_pred -----------hhhhhhcCc---------------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 632 -----------EKDYYEKSP---------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 632 -----------~~~~~~~sp---------------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
...+....+ ...+.+ ++|+|+++|++|..++++ + ++.+.+ ...+ ++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~P~lii~g~~D~~~~~~-~-~~~~~~----~~~~-~~ 262 (292)
T 3l80_A 191 FKQLWRGYDYCQRQLNDVQSLPDFKIRLALGEEDFKTGISE-KIPSIVFSESFREKEYLE-S-EYLNKH----TQTK-LI 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTCCSSCCCCGGGGCCCCCT-TSCEEEEECGGGHHHHHT-S-TTCCCC----TTCE-EE
T ss_pred HHHhHHHHHHHHHHHHhhhhccccchhhhhcchhhhhccCC-CCCEEEEEccCccccchH-H-HHhccC----CCce-ee
Confidence 000111111 123445 899999999999988876 4 443322 2446 89
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
++++||.+. .+..+++.+.+.+|++++
T Consensus 263 ~~~~gH~~~-~e~p~~~~~~i~~fl~~~ 289 (292)
T 3l80_A 263 LCGQHHYLH-WSETNSILEKVEQLLSNH 289 (292)
T ss_dssp ECCSSSCHH-HHCHHHHHHHHHHHHHTC
T ss_pred eCCCCCcch-hhCHHHHHHHHHHHHHhc
Confidence 999999643 356678888888888864
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-13 Score=154.33 Aligned_cols=262 Identities=10% Similarity=0.003 Sum_probs=166.4
Q ss_pred EEECCEEEEEeCCCC----eEEEEeCCCCCCCceecCCCC---CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 151 RIFGDTVIFSNYKDQ----RLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~----~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
...++..+|.....+ .+|+.+.+ +..+.|...+ .........++|||||++|+|+.+..+.+ ...|
T Consensus 85 ~~~g~~~y~~~~~~~~~~~~~~r~~~~---~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~----~~~i 157 (693)
T 3iuj_A 85 FREGRYHYFFKNDGLQNQNVLWRQQEG---KPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSD----WREI 157 (693)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEECTT---SCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCC----EEEE
T ss_pred EEECCEEEEEEEcCCCceeEEEEeCCC---CCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCc----eEEE
Confidence 445677777654331 56665544 3334332210 11134567789999999999988755433 3799
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCC-----CCCCccEEEEEEecCCCceeeeEEecCCC-C
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPN-----MPWDKAELWVGYISENGDVYKRVCVAGFD-P 297 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~-----~~~~~~~l~v~d~~~~g~~~~~~~~~~~~-~ 297 (732)
+++|+++|+ ....+........++|| ||+.|+|.+.+... ..+...+||++++. ++......+....+ .
T Consensus 158 ~v~dl~tg~---~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg-t~~~~~~~v~~~~~~~ 232 (693)
T 3iuj_A 158 HLMDVESKQ---PLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG-TAQEDDRLVFGAIPAQ 232 (693)
T ss_dssp EEEETTTCS---EEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT-SCGGGCEEEESCSGGG
T ss_pred EEEECCCCC---CCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC-CCcccceEEEecCCCC
Confidence 999999998 55543222224679999 99999999866430 00134679999987 44332234443321 0
Q ss_pred CccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC--eEEEecccccccCCCceeecccceeeeeecCCCCEEEEE
Q 004735 298 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g--~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 374 (732)
. .....+.|||||+ |++.+........||++|++++ +.+.|+........+ |++ +++.|++.
T Consensus 233 ~--~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~------------~g~~l~~~ 297 (693)
T 3iuj_A 233 H--HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDN------------KGSTLYLL 297 (693)
T ss_dssp C--CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEE------------ETTEEEEE
T ss_pred C--eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eec------------cCCEEEEE
Confidence 0 2345688999999 8777765233358999998776 567776442211111 332 78889998
Q ss_pred EEECC-EEEEEEEECCCCce---EEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 375 YRQNG-RSYLGILDDFGHSL---SLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 375 s~~~g-~~~ly~~~~~~~~~---~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
+++++ ..+|+.++++++.. +.|+.....+..++..++.+++... .+....|+++|++++..+.|+
T Consensus 298 t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~-~~g~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 298 TNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYM-VDATARVEQFDYEGKRVREVA 366 (693)
T ss_dssp ECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEE-ETTEEEEEEECTTSCEEEEEC
T ss_pred ECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEE-ECCeeEEEEEECCCCeeEEee
Confidence 87665 47899999988764 6676654433366667777665554 445567999999887765554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-12 Score=135.88 Aligned_cols=274 Identities=10% Similarity=0.040 Sum_probs=157.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeE
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l 167 (732)
..+..++|+| |+.+|.........++..+|..+..+| +.+.+.... ........++++++.+++.+..++.+
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-~~~~~~~~~------~~~~~p~~~~~dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-TLHLLNTQK------TMGADPCYLTTNGKNIVTANYSGGSI 122 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-EEEEEEEEE------CSSSCEEEEEECSSEEEEEETTTTEE
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-cEEEeeEec------cCCCCcEEEEECCCEEEEEECCCCEE
Confidence 4677899999 888888876433457777788766533 322222100 00111223445555677777677889
Q ss_pred EEEeCCCCCCCceecCC-----CCCC-----CCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC-----
Q 004735 168 YKHSIDSKDSSPLPITP-----DYGE-----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN----- 232 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~-----~~~~-----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~----- 232 (732)
.+++++.. +....+.. +.+. ...+...+.|||||++|++..... ..|++++++...
T Consensus 123 ~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--------~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 123 TVFPIGQD-GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT--------DQIHKFNINPNANADNK 193 (361)
T ss_dssp EEEEBCTT-SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTCCTTTC
T ss_pred EEEEeCCC-CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC--------CEEEEEEEcCCCCcccc
Confidence 99998642 33322211 0000 011224578999999876654321 355555554322
Q ss_pred --ccc---cEEc-ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 233 --IQE---PKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 233 --~~~---~~~l-t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
... ...+ .........++|||||++|++.. .. ...|.+++++ +|++.....+.... ........+
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~------~~~v~v~~~~-~g~~~~~~~~~~~~-~~~~~~~~i 264 (361)
T 3scy_A 194 EKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN-EI------GGTVIAFRYA-DGMLDEIQTVAADT-VNAQGSGDI 264 (361)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-TT------TCEEEEEEEE-TTEEEEEEEEESCS-SCCCCEEEE
T ss_pred cceeecccccceecCCCCCCeEEEEcCCCCEEEEEc-CC------CCeEEEEEec-CCceEEeEEEecCC-CCCCCcccE
Confidence 000 0111 12222345689999999887665 22 3458999998 78765444333221 000234578
Q ss_pred eeCCCCcEEEEEecc-CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEE
Q 004735 307 KWSSKGELFFVTDRK-NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (732)
Q Consensus 307 ~wspDg~l~~~~~~~-~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~ 385 (732)
.|+|||+.+|++++. .+...+|.++..+++.+.+..... -.. ...+.|.+ +++.|++....++...+|.
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~------~~~~~~sp---dg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH------PRNFIITP---NGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC------CCEEEECT---TSCEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC------CceEEECC---CCCEEEEEECCCCCEEEEE
Confidence 899999955566663 355667767666777665542211 011 12344543 7777777766778888999
Q ss_pred EECCCCceEEec
Q 004735 386 LDDFGHSLSLLD 397 (732)
Q Consensus 386 ~~~~~~~~~~lt 397 (732)
++.++++++.+.
T Consensus 335 ~d~~~g~~~~~~ 346 (361)
T 3scy_A 335 RDQATGLLTDIK 346 (361)
T ss_dssp ECTTTCCEEECS
T ss_pred EECCCCcEeecc
Confidence 999999887765
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=141.48 Aligned_cols=216 Identities=13% Similarity=0.048 Sum_probs=131.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++.... .++.|.||++||.+... ..|...+..|++. |.|+++|+||.|..... . .
T Consensus 29 ~g~~l~y~~~G----------~g~~~~vvllHG~~~~~--~~w~~~~~~L~~~-~~via~Dl~GhG~S~~~----~---~ 88 (318)
T 2psd_A 29 LDSFINYYDSE----------KHAENAVIFLHGNATSS--YLWRHVVPHIEPV-ARCIIPDLIGMGKSGKS----G---N 88 (318)
T ss_dssp TTEEEEEEECC----------SCTTSEEEEECCTTCCG--GGGTTTGGGTTTT-SEEEEECCTTSTTCCCC----T---T
T ss_pred CCeEEEEEEcC----------CCCCCeEEEECCCCCcH--HHHHHHHHHhhhc-CeEEEEeCCCCCCCCCC----C---C
Confidence 68777754431 12236899999985443 4455556666554 79999999977654321 0 1
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC----HH------HHHhhc--
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD----LS------MLRAET-- 617 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d----~~------~~~~~~-- 617 (732)
+...+++..+.+..+++...+ .+++.|+||||||.+++.++. +|++++++|++++... +. ......
T Consensus 89 ~~~~~~~~a~dl~~ll~~l~~-~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (318)
T 2psd_A 89 GSYRLLDHYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDEWPDIEEDIALIKS 167 (318)
T ss_dssp SCCSHHHHHHHHHHHHTTSCC-CSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTTSCSCHHHHHHHHS
T ss_pred CccCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhhhhhHHHHHHHHhc
Confidence 123467777777777766332 178999999999999999998 9999999998754211 00 000000
Q ss_pred ----------chhhhhhhhhhc-C--Ch---hh-----------------hhhcCc----------------cccCCCC-
Q 004735 618 ----------HKFESRYIDNLV-G--SE---KD-----------------YYEKSP----------------INFVDKF- 647 (732)
Q Consensus 618 ----------~~~~~~~~~~~~-~--~~---~~-----------------~~~~sp----------------~~~~~~i- 647 (732)
..+...++.... . .. +. +....+ ...+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 247 (318)
T 2psd_A 168 EEGEKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASD 247 (318)
T ss_dssp THHHHHHTTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHHHHHHHHHHHHTCT
T ss_pred ccchhhhhcchHHHHhhccccccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHHHHHHHHHHhcccc
Confidence 000000000000 0 00 00 000000 0123467
Q ss_pred CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 648 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++|+|+++|++| ++++ .+.++.+.+ .+.+++++ ++||.. ..+..+++.+.+.+||.+...
T Consensus 248 ~~P~Lvi~G~~D-~~~~-~~~~~~~~~----~~~~~~~i-~~gH~~-~~e~p~~~~~~i~~fl~~~~~ 307 (318)
T 2psd_A 248 DLPKLFIESDPG-FFSN-AIVEGAKKF----PNTEFVKV-KGLHFL-QEDAPDEMGKYIKSFVERVLK 307 (318)
T ss_dssp TSCEEEEEEEEC-SSHH-HHHHHHTTS----SSEEEEEE-EESSSG-GGTCHHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeccc-cCcH-HHHHHHHhC----CCcEEEEe-cCCCCC-HhhCHHHHHHHHHHHHHHhhc
Confidence 899999999999 8776 555554443 35678888 679964 457788999999999988765
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=139.68 Aligned_cols=248 Identities=13% Similarity=0.145 Sum_probs=148.2
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCC-CCCCCCCEEEEEcCCCCCccCCccc-HHHHHHHHCCCEEEEEcC--CCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQA-SPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNY--GGS 535 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~-~~~~~~P~vl~~HGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~--rG~ 535 (732)
+...+++.+..-|.++...+|.|++..-.. ++++++|+|.++||.+.....+... ...+.+.+.|.+++.++- ++.
T Consensus 13 ~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~~ 92 (299)
T 4fol_A 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGD 92 (299)
T ss_dssp EEEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEEECSSCCST
T ss_pred EEEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCChHHHHHhchHhHHHHHcCchhhccCCCccee
Confidence 345677777667889999999998632110 1356799999999985443322211 134556677999999983 211
Q ss_pred --CC-------CC--hh-hHHhh------ccCCCcccHHHHHHHHHHHHh----cCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 536 --TG-------YG--RE-FRERL------LGRWGIVDVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 536 --~g-------~g--~~-~~~~~------~~~~~~~~~~D~~~~i~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
.+ .| .. +.+.. ...+...-.+|+...|+.... +...+.++.+|.||||||+-|+.++.
T Consensus 93 ~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~al 172 (299)
T 4fol_A 93 EVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYL 172 (299)
T ss_dssp TSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHHH
T ss_pred ecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHHH
Confidence 00 00 00 00000 000101113333333332211 11234578999999999999999886
Q ss_pred ---CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcC-ChhhhhhcCccccCC---CC-CCCEEEEEeCCCCccChH
Q 004735 594 ---FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVD---KF-SCPIILFQGLEDKVVPPD 665 (732)
Q Consensus 594 ---~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~---~i-~~P~Lii~G~~D~~v~~~ 665 (732)
+|.++.++.+.+|..+....... .......++ +...+...++...+. +. ..++++-+|++|......
T Consensus 173 ~~~~~~~~~~~~s~s~~~~p~~~~~~-----~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~i~id~G~~D~f~~~~ 247 (299)
T 4fol_A 173 KGYSGKRYKSCSAFAPIVNPSNVPWG-----QKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEH 247 (299)
T ss_dssp HTGGGTCCSEEEEESCCCCGGGSHHH-----HHHHHHHTC-----CGGGCHHHHGGGSCCCTTCCEEEEEETTCTTHHHH
T ss_pred hCCCCCceEEEEecccccCccccccc-----ccccccccccchhhhhhcCHHHHHHhcccCCCCceEEEecCCCcchhhh
Confidence 47889999999998875432211 111222222 345555666544433 22 257999999999874321
Q ss_pred -HHHHHHHHHHhCCCC--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 666 -QARKIYKALKENGLP--VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 666 -~~~~~~~~l~~~g~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
..+.+.++++++|.+ +++...+|.+|.+. .+...++..+.|..++|+
T Consensus 248 l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~---f~~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 248 LKPELLLEAVKATSWQDYVEIKKVHGFDHSYY---FVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp TCTHHHHHHHTTSTTTTCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH---HHHHHHHHHHHHHHHhcC
Confidence 236788889888865 78999999899763 456778888999999987
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-15 Score=156.73 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=121.9
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.+ ...|...+..|+ +||.|+++|+||.+....... .........++..+.+..+++.. +.+
T Consensus 25 ~p~vv~lHG~~~~--~~~~~~~~~~l~-~g~~v~~~D~~G~G~s~~~~~---~~~~~~~~~~~~~~~l~~~l~~l--~~~ 96 (304)
T 3b12_A 25 GPALLLLHGFPQN--LHMWARVAPLLA-NEYTVVCADLRGYGGSSKPVG---APDHANYSFRAMASDQRELMRTL--GFE 96 (304)
Confidence 4789999998543 345666777777 799999999997654332210 00001122333333333333331 345
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh----------------------------cchhhhh-h
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE----------------------------THKFESR-Y 624 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~----------------------------~~~~~~~-~ 624 (732)
+++++|||+||.+++.++. +|++++++|++++.......... ...+... +
T Consensus 97 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (304)
T 3b12_A 97 RFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFYEGCL 176 (304)
Confidence 8999999999999999988 99999999999886542211000 0000001 1
Q ss_pred hhhhcC-----Ch---hh-----------------hhhc---C----ccccCCCCCCCEEEEEeCCCCcc-ChHHHHHHH
Q 004735 625 IDNLVG-----SE---KD-----------------YYEK---S----PINFVDKFSCPIILFQGLEDKVV-PPDQARKIY 671 (732)
Q Consensus 625 ~~~~~~-----~~---~~-----------------~~~~---s----p~~~~~~i~~P~Lii~G~~D~~v-~~~~~~~~~ 671 (732)
+..... .+ +. +... + ....+.++++|+|+++|++|..+ +......+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~ 256 (304)
T 3b12_A 177 FGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQVQCPALVFSGSAGLMHSLFEMQVVWA 256 (304)
Confidence 100000 00 00 0000 0 00115678899999999999655 444444443
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 672 KALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 672 ~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+.+. +++++++ ++||.+. .++.+++.+.+.+||++...
T Consensus 257 ~~~~----~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 294 (304)
T 3b12_A 257 PRLA----NMRFASL-PGGHFFV-DRFPDDTARILREFLSDARS 294 (304)
Confidence 3332 4577788 9999753 35667888888999987654
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=146.97 Aligned_cols=224 Identities=14% Similarity=0.063 Sum_probs=140.1
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHH------CCCEEEEEcC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS------RGWAFVDVNY 532 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~------~G~~v~~~d~ 532 (732)
.+.+.+++.+..-|....+++|.|++. +. +.+++|+|+++||.... .......+.+.. .+++|+.+++
T Consensus 10 ~~v~~~~~~S~~l~~~r~~~VylP~~y--~~-~~~~yPVlylldG~~~f---~~~~~~~~~l~~~~~~~~~~~IvV~i~~ 83 (331)
T 3gff_A 10 VEYQSKRLESRLLKETREYVIALPEGY--AQ-SLEAYPVVYLLDGEDQF---DHMASLLQFLSQGTMPQIPKVIIVGIHN 83 (331)
T ss_dssp -CEEEEEEEETTTTEEEEEEEECCTTG--GG-SCCCEEEEEESSHHHHH---HHHHHHHHHHTCSSSCSSCCCEEEEECC
T ss_pred ceEEEEEEEecCCCCeEEEEEEeCCCC--CC-CCCCccEEEEecChhhh---HHHHHHHHHHHhhhhcCCCCEEEEEECC
Confidence 345777888765688999999999873 32 15678999999995110 011123344433 2588898875
Q ss_pred CCCCCCChhhHHh--------------hccCCCcccHHHH--HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CC
Q 004735 533 GGSTGYGREFRER--------------LLGRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR 595 (732)
Q Consensus 533 rG~~g~g~~~~~~--------------~~~~~~~~~~~D~--~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p 595 (732)
. .+..++... .....+.....+. .+.+.++.++..++..+ +|+||||||++++.++. +|
T Consensus 84 ~---~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p 159 (331)
T 3gff_A 84 T---NRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDR 159 (331)
T ss_dssp S---SHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTC
T ss_pred C---CcccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCc
Confidence 2 111111000 0000111122222 24566777777777655 89999999999999988 99
Q ss_pred CcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCC-------ccChHHHH
Q 004735 596 DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK-------VVPPDQAR 668 (732)
Q Consensus 596 ~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-------~v~~~~~~ 668 (732)
++|+++++.+|...+... . .+... ..+ +........|+++.+|+.|. .++...++
T Consensus 160 ~~F~~~~~~S~~~w~~~~-----~----~~~~~----~~~-----~~~~~~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~ 221 (331)
T 3gff_A 160 PLFSAYLALDTSLWFDSP-----H----YLTLL----EER-----VVKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNL 221 (331)
T ss_dssp SSCSEEEEESCCTTTTTT-----H----HHHHH----HHH-----HHHCCCSSEEEEEEECCCSEETTTEECCHHHHHHH
T ss_pred hhhheeeEeCchhcCChH-----H----HHHHH----HHH-----hhcccCCCCeEEEEeCCCCCCCccchHHHHHHHHH
Confidence 999999999997643210 0 00000 000 01111235799999999998 56778889
Q ss_pred HHHHHHHhC---CCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 669 KIYKALKEN---GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 669 ~~~~~l~~~---g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
++++.|++. |+++++.++++++|+... ...+...++||-...
T Consensus 222 ~l~~~Lk~~~~~g~~~~~~~~pg~~H~sv~----~~~~~~~l~~lf~~~ 266 (331)
T 3gff_A 222 AFADKLTKLAPKGLGFMAKYYPEETHQSVS----HIGLYDGIRHLFKDF 266 (331)
T ss_dssp HHHHHHHHHCCTTEEEEEEECTTCCTTTHH----HHHHHHHHHHHHGGG
T ss_pred HHHHHHHhccCCCceEEEEECCCCCccccH----HHHHHHHHHHHHhhc
Confidence 999999986 678999999999997422 344445555554444
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-12 Score=136.01 Aligned_cols=234 Identities=11% Similarity=0.025 Sum_probs=151.1
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+..+++....++.|+++|+.+ ++....... ......++|+|||++|++..... ..|+++|+.+++
T Consensus 43 g~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~~--------~~v~v~d~~~~~- 107 (391)
T 1l0q_A 43 GTKVYVANAHSNDVSIIDTAT--NNVIATVPA----GSSPQGVAVSPDGKQVYVTNMAS--------STLSVIDTTSNT- 107 (391)
T ss_dssp SSEEEEEEGGGTEEEEEETTT--TEEEEEEEC----SSSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTE-
T ss_pred CCEEEEECCCCCeEEEEECCC--CeEEEEEEC----CCCccceEECCCCCEEEEEECCC--------CEEEEEECCCCe-
Confidence 446777776788999999987 554433322 12456778999999977765432 589999999887
Q ss_pred cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
...............|||||++|++.... ...|+++|+. +++. ...+... ..+..+.|+|||+
T Consensus 108 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------~~~v~~~d~~-~~~~--~~~~~~~-----~~~~~~~~~~dg~ 170 (391)
T 1l0q_A 108 --VAGTVKTGKSPLGLALSPDGKKLYVTNNG-------DKTVSVINTV-TKAV--INTVSVG-----RSPKGIAVTPDGT 170 (391)
T ss_dssp --EEEEEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETT-TTEE--EEEEECC-----SSEEEEEECTTSS
T ss_pred --EEEEEeCCCCcceEEECCCCCEEEEEeCC-------CCEEEEEECC-CCcE--EEEEecC-----CCcceEEECCCCC
Confidence 55544444455678999999999776522 3469999998 6765 3334433 3456789999999
Q ss_pred -EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 314 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 314 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
+++.... . ..|+++|+.+++............ .+.|.+ +++.++..........|+++++.+++
T Consensus 171 ~l~~~~~~-~--~~v~~~d~~~~~~~~~~~~~~~~~---------~~~~~~---~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 171 KVYVANFD-S--MSISVIDTVTNSVIDTVKVEAAPS---------GIAVNP---EGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp EEEEEETT-T--TEEEEEETTTTEEEEEEECSSEEE---------EEEECT---TSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred EEEEEeCC-C--CEEEEEECCCCeEEEEEecCCCcc---------ceEECC---CCCEEEEEecCcCCCcEEEEECCCCe
Confidence 5444333 3 458888998887665543322111 233433 77777777753344568888988876
Q ss_pred eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 393 LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 393 ~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..........+..+ ..++++.++++.+.+ ..++++|+.+++.
T Consensus 236 ~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d--~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 236 ITARIPVGPDPAGIAVTPDGKKVYVALSFX--NTVSVIDTATNTI 278 (391)
T ss_dssp EEEEEECCSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEE
T ss_pred EEEEEecCCCccEEEEccCCCEEEEEcCCC--CEEEEEECCCCcE
Confidence 54433333345555 344555555554333 5789999988764
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=140.60 Aligned_cols=216 Identities=11% Similarity=0.045 Sum_probs=126.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++....+ +...|.||++||.+.+ ...|...+..|+ .+|.|+++|+||.|.+... ..
T Consensus 12 ~g~~l~y~~~~~---------G~~~p~vvllHG~~~~--~~~w~~~~~~L~-~~~rvia~DlrGhG~S~~~-----~~-- 72 (276)
T 2wj6_A 12 FDNKLSYIDNQR---------DTDGPAILLLPGWCHD--HRVYKYLIQELD-ADFRVIVPNWRGHGLSPSE-----VP-- 72 (276)
T ss_dssp TTEEEEEEECCC---------CCSSCEEEEECCTTCC--GGGGHHHHHHHT-TTSCEEEECCTTCSSSCCC-----CC--
T ss_pred CCeEEEEEEecC---------CCCCCeEEEECCCCCc--HHHHHHHHHHHh-cCCEEEEeCCCCCCCCCCC-----CC--
Confidence 688887544311 1224789999998543 455677777776 5799999999976554321 11
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCC--HHHHHh------h----
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVAD--LSMLRA------E---- 616 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d--~~~~~~------~---- 616 (732)
...+++..+.+..+++.. +.+++.++||||||.+++.++. + |++++++|++++... ...... .
T Consensus 73 -~~~~~~~a~dl~~ll~~l--~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (276)
T 2wj6_A 73 -DFGYQEQVKDALEILDQL--GVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERW 149 (276)
T ss_dssp -CCCHHHHHHHHHHHHHHH--TCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHHHHHHHHCTTTH
T ss_pred -CCCHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHHHhhhccCcchH
Confidence 123444444444444432 3468999999999999999998 8 999999999875321 000000 0
Q ss_pred ---cchhhhhhhhh---------hcC-----Chhhh-----------hh-cCccccCCCCCCCEEEEEeCCCCccC-h-H
Q 004735 617 ---THKFESRYIDN---------LVG-----SEKDY-----------YE-KSPINFVDKFSCPIILFQGLEDKVVP-P-D 665 (732)
Q Consensus 617 ---~~~~~~~~~~~---------~~~-----~~~~~-----------~~-~sp~~~~~~i~~P~Lii~G~~D~~v~-~-~ 665 (732)
...+...+... +.. ..+.+ .. .++...+.++++|+|+++|..|...+ + .
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~~~~~~~~~~~~ 229 (276)
T 2wj6_A 150 REGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEK 229 (276)
T ss_dssp HHHHHHHHHHHHTTBCCHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEEECCSCSHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhhhcchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEEecCccchhHHH
Confidence 00000000000 000 00000 00 11223456788999998874433222 1 2
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 666 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
...++.+. -.+.++++++++||.. ..+..+.+.+.+.+||.+.
T Consensus 230 ~~~~~~~~----~p~a~~~~i~~~gH~~-~~e~P~~~~~~i~~Fl~~~ 272 (276)
T 2wj6_A 230 INSDFAEQ----HPWFSYAKLGGPTHFP-AIDVPDRAAVHIREFATAI 272 (276)
T ss_dssp HHHHHHHH----CTTEEEEECCCSSSCH-HHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh----CCCeEEEEeCCCCCcc-cccCHHHHHHHHHHHHhhc
Confidence 22333333 2367999999999964 3466788889999999764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-12 Score=130.73 Aligned_cols=240 Identities=10% Similarity=0.031 Sum_probs=140.7
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCc--eecCCCCCCCCeEeec-eeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSP--LPITPDYGEPLVSYAD-GIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~--~~lt~~~~~~~~~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+++++..+++....++.|+++|+++ ++. +.++... .... ++|+|||++|+ +...... ...|+++
T Consensus 47 ~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~-~~~~~~~-----~~~i~v~ 113 (331)
T 3u4y_A 47 ITSDCSNVVVTSDFCQTLVQIETQL--EPPKVVAIQEGQ-----SSMADVDITPDDQFAV-TVTGLNH-----PFNMQSY 113 (331)
T ss_dssp ECSSSCEEEEEESTTCEEEEEECSS--SSCEEEEEEECS-----SCCCCEEECTTSSEEE-ECCCSSS-----SCEEEEE
T ss_pred EcCCCCEEEEEeCCCCeEEEEECCC--CceeEEecccCC-----CCccceEECCCCCEEE-EecCCCC-----cccEEEE
Confidence 3334556777777778999999987 553 3333331 1234 78999999977 4332211 1389999
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee--EEecCCCCCccccCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--VCVAGFDPTIVESPT 304 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~--~~~~~~~~~~~~~~~ 304 (732)
|+++++ .............+.|||||++|++..... ...|++++++.+|..... ..+... ..+.
T Consensus 114 d~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~-----~~~~ 179 (331)
T 3u4y_A 114 SFLKNK---FISTIPIPYDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQEFISGG-----TRPF 179 (331)
T ss_dssp ETTTTE---EEEEEECCTTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEEEEECSS-----SSEE
T ss_pred ECCCCC---eEEEEECCCCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCCccccCC-----CCcc
Confidence 999887 544443333446789999999987765322 233777887745554222 222222 3456
Q ss_pred CceeCCCCc-EEEEEeccCCeeeEEEEeccCCeE---EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 305 ~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~---~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
.+.|+|||+ +++.... . ..|.++|+.+++. ....+...... .+.|.+ +++.+|++.. +.
T Consensus 180 ~~~~spdg~~l~v~~~~-~--~~v~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~sp---dg~~l~v~~~--~~ 242 (331)
T 3u4y_A 180 NITFTPDGNFAFVANLI-G--NSIGILETQNPENITLLNAVGTNNLPG---------TIVVSR---DGSTVYVLTE--ST 242 (331)
T ss_dssp EEEECTTSSEEEEEETT-T--TEEEEEECSSTTSCEEEEEEECSSCCC---------CEEECT---TSSEEEEECS--SE
T ss_pred ceEECCCCCEEEEEeCC-C--CeEEEEECCCCcccceeeeccCCCCCc---------eEEECC---CCCEEEEEEc--CC
Confidence 789999999 5554432 3 4577788887764 22222221222 233443 7777776543 45
Q ss_pred EEEEEEECCCCceEEeccC-------CCc---eEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 381 SYLGILDDFGHSLSLLDIP-------FTD---IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 381 ~~ly~~~~~~~~~~~lt~~-------~~~---v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
..|+++++++++.+.+..- ... ...+ ..++++.+|+++... ..+.++|+++..
T Consensus 243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~ 306 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS--RELKVFTISGKV 306 (331)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT--TEEEEEETTSCE
T ss_pred CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC--CcEEEEEecCCc
Confidence 5688999998877443321 111 1112 334444555554332 467888877654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-12 Score=135.46 Aligned_cols=258 Identities=11% Similarity=0.114 Sum_probs=144.7
Q ss_pred eEEECC-EEEEEeCC--CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 150 FRIFGD-TVIFSNYK--DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 150 ~~~~~~-~i~f~~~~--~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
.+++++ ++++.... ++.|+++++++ +..+++..... .......++|||||++|++..... ..|.++
T Consensus 45 ~a~spdg~l~~~~~~~~~~~v~~~~~~~--g~~~~~~~~~~-~~~~p~~~a~spdg~~l~~~~~~~--------~~v~v~ 113 (347)
T 3hfq_A 45 LALSAKDCLYSVDKEDDEGGIAAWQIDG--QTAHKLNTVVA-PGTPPAYVAVDEARQLVYSANYHK--------GTAEVM 113 (347)
T ss_dssp EEECTTCEEEEEEEETTEEEEEEEEEET--TEEEEEEEEEE-ESCCCSEEEEETTTTEEEEEETTT--------TEEEEE
T ss_pred EEEccCCeEEEEEecCCCceEEEEEecC--CcEEEeeeeec-CCCCCEEEEECCCCCEEEEEeCCC--------CEEEEE
Confidence 344433 46655542 46899999976 66555543100 012235678999999876665322 456666
Q ss_pred EcC-CCCccccEEcc----cCC--------CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEec
Q 004735 227 ALN-GQNIQEPKVLV----SGS--------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA 293 (732)
Q Consensus 227 d~~-~~~~~~~~~lt----~~~--------~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~ 293 (732)
+++ ++. .+.+. .+. .......|||||+ |+... . ....|++++++.+|++.....+.
T Consensus 114 ~~~~~g~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~-~------~~~~v~~~~~~~~g~~~~~~~~~ 182 (347)
T 3hfq_A 114 KIAADGA---LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVID-L------GSDKVYVYNVSDAGQLSEQSVLT 182 (347)
T ss_dssp EECTTSC---EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEE-T------TTTEEEEEEECTTSCEEEEEEEE
T ss_pred EeCCCCC---eeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEe-C------CCCEEEEEEECCCCcEEEeeeEE
Confidence 764 343 33322 111 1234578999999 65543 2 23468999987456654433322
Q ss_pred CCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccc---ccccCCCceeecccceeeeeecCCCC
Q 004735 294 GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGINSYEIIQSHGEKN 369 (732)
Q Consensus 294 ~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~ 369 (732)
... . ..+..++|+|||+ +++.... .+...+|.++..+++.+.+... ........ ....+.|.+ +++
T Consensus 183 ~~~-g--~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~~sp---dG~ 252 (347)
T 3hfq_A 183 MEA-G--FGPRHLVFSPDGQYAFLAGEL-SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN---GAAAIRLSH---DGH 252 (347)
T ss_dssp CCT-T--CCEEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC---EEEEEEECT---TSC
T ss_pred cCC-C--CCCceEEECCCCCEEEEEeCC-CCEEEEEEecCCCCceEEeeeeeecCCCCCCCC---cceeEEECC---CCC
Confidence 221 1 2345689999999 5554444 5666677776656775544311 11100001 122345554 777
Q ss_pred EEEEEEEECCEEEEEEEECCCCceEEe---ccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 370 LIACSYRQNGRSYLGILDDFGHSLSLL---DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 370 ~l~~~s~~~g~~~ly~~~~~~~~~~~l---t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
.||++...++.-.+|.++.+ +..+.+ ......+..+ ..++++.++++......-.+|.+|.++|+++.+.
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTAD-GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp EEEEEEETTTEEEEEEECGG-GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEEEEeCCCCEEEEEEECCC-CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence 78877766777777766533 343333 2222234445 4556666677766655566888888888876654
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-13 Score=135.36 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=135.1
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcC--------CCCCCCChhhHH
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY--------GGSTGYGREFRE 544 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~--------rG~~g~g~~~~~ 544 (732)
..+.+.+|.|.. ..++.|+||.+||+... ..+||+++.+++ +|+.|+|.-+..
T Consensus 90 ~~~~~~i~lP~~------~~~p~Pvii~i~~~~~~-------------~~~G~a~~~~~~~~v~~~~~~gs~g~g~f~~l 150 (375)
T 3pic_A 90 ISFTVTITYPSS------GTAPYPAIIGYGGGSLP-------------APAGVAMINFNNDNIAAQVNTGSRGQGKFYDL 150 (375)
T ss_dssp EEEEEEEECCSS------SCSSEEEEEEETTCSSC-------------CCTTCEEEEECHHHHSCCSSGGGTTCSHHHHH
T ss_pred eEEEEEEECCCC------CCCCccEEEEECCCccc-------------cCCCeEEEEecccccccccCCCCccceecccc
Confidence 347889999976 24567999999985211 357999999986 566677763311
Q ss_pred h-hccCCCcccH--HHHHHHHHHHHhcC--CCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCC----HHHHH-
Q 004735 545 R-LLGRWGIVDV--NDCCSCATFLVGSG--KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVAD----LSMLR- 614 (732)
Q Consensus 545 ~-~~~~~~~~~~--~D~~~~i~~l~~~~--~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d----~~~~~- 614 (732)
. ....||.... -++..+++||.+.+ .+|++||+++|||+||..++++++..++|+++|+.++..+ ++...
T Consensus 151 y~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D~Ri~~~v~~~~g~~G~~~~R~~~~ 230 (375)
T 3pic_A 151 YGSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFEKRIVLTLPQESGAGGSACWRISDY 230 (375)
T ss_dssp HCTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHCTTEEEEEEESCCTTTTSCHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcCCceEEEEeccCCCCchhhhhhhhh
Confidence 1 1234555443 48999999999988 8999999999999999999999997779999999886432 22100
Q ss_pred ----hhc-chhhhhhhh-hhc-CChhhhh---hcCccc---cCCCCC-CCEEEEEeCCCCccChHHHHHHHHHH----Hh
Q 004735 615 ----AET-HKFESRYID-NLV-GSEKDYY---EKSPIN---FVDKFS-CPIILFQGLEDKVVPPDQARKIYKAL----KE 676 (732)
Q Consensus 615 ----~~~-~~~~~~~~~-~~~-~~~~~~~---~~sp~~---~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l----~~ 676 (732)
.+. ......... ..+ .+-..|. ..-|.. .+.-+. .|+|++.| +|..+++......+..+ +.
T Consensus 231 ~~~~Ge~v~~~~~~~~e~~Wf~~~~~~y~~~~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~~~g~~~~~~~a~~VY~~ 309 (375)
T 3pic_A 231 LKSQGANIQTASEIIGEDPWFSTTFNSYVNQVPVLPFDHHSLAALIAPRGLFVIDN-NIDWLGPQSCFGCMTAAHMAWQA 309 (375)
T ss_dssp HHHTTCCCCCHHHHTTTCSCSCGGGGGTTTCGGGSSCCHHHHHHTSTTSEEEEECC-CCGGGCHHHHHHHHHHHHHHHHH
T ss_pred hcccCccccccccccCcccccccchhhhcccccccCcCHHHHHHHhCCceEEEecC-CCcccCcHHHHHHHHHHHHHHHH
Confidence 000 000000000 000 0001111 011111 122232 57999999 99888887654433333 44
Q ss_pred CCC--CEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCC
Q 004735 677 NGL--PVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 677 ~g~--~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
.|. ++.+....+.+|.... .+..+.+.+||+++|++.
T Consensus 310 lG~~d~~~~~~~ggH~Hc~fp----~~~~~~~~~F~~k~L~~~ 348 (375)
T 3pic_A 310 LGVSDHMGYSQIGAHAHCAFP----SNQQSQLTAFVQKFLLGQ 348 (375)
T ss_dssp TTCGGGEEEECCSCCSTTCCC----GGGHHHHHHHHHHHTSCC
T ss_pred cCCccceEEEeeCCCccccCC----HHHHHHHHHHHHHHhCCC
Confidence 554 4666543333453222 133467889999999863
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-14 Score=146.36 Aligned_cols=198 Identities=13% Similarity=0.012 Sum_probs=113.7
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.. ...|..++..|.+ ||.|+++|+||.+. +... .....+++..+.+..+++... ..+
T Consensus 51 ~~~lvllHG~~~~--~~~~~~l~~~L~~-~~~v~~~D~~G~G~---S~~~-----~~~~~~~~~a~~~~~~l~~~~-~~~ 118 (280)
T 3qmv_A 51 PLRLVCFPYAGGT--VSAFRGWQERLGD-EVAVVPVQLPGRGL---RLRE-----RPYDTMEPLAEAVADALEEHR-LTH 118 (280)
T ss_dssp SEEEEEECCTTCC--GGGGTTHHHHHCT-TEEEEECCCTTSGG---GTTS-----CCCCSHHHHHHHHHHHHHHTT-CSS
T ss_pred CceEEEECCCCCC--hHHHHHHHHhcCC-CceEEEEeCCCCCC---CCCC-----CCCCCHHHHHHHHHHHHHHhC-CCC
Confidence 4889999997533 3456667777776 99999999997543 3111 111234444444444443321 347
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcce----EEEeecCcCCHHHH----HhhcchhhhhhhhhhcC-------C-------
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFK----AGASLYGVADLSML----RAETHKFESRYIDNLVG-------S------- 631 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~----a~v~~~~~~d~~~~----~~~~~~~~~~~~~~~~~-------~------- 631 (732)
++.|+|||+||.+++.++. +|+++. .+++.......... ...........+....+ +
T Consensus 119 ~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (280)
T 3qmv_A 119 DYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRR 198 (280)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC---------CCTT
T ss_pred CEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHHH
Confidence 8999999999999999988 777766 55554432210000 00000000000000000 0
Q ss_pred -------hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC-cccHHHHH
Q 004735 632 -------EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK-AENIKFTL 703 (732)
Q Consensus 632 -------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~-~~~~~~~~ 703 (732)
......+.+ ..+.++++|+|+++|++|.+++++....+.+.+. ...+++++++ ||.+.. ++...++.
T Consensus 199 ~~~~~~~~~~~~~~~~-~~~~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~g-gH~~~~~~~~~~~~~ 273 (280)
T 3qmv_A 199 LPVLRADLRACERYDW-HPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTT---GSFLRRHLPG-NHFFLNGGPSRDRLL 273 (280)
T ss_dssp HHHHHHHHHHHHTCCC-CCCCCBCSCEEEEEEEECSSSCHHHHHTTGGGBS---SCEEEEEEEE-ETTGGGSSHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-cCCCceecCeEEEEecCCCCcChHHHHHHHHhcC---CceEEEEecC-CCeEEcCchhHHHHH
Confidence 000111111 1246788999999999999999987776655442 2467888875 896533 34555555
Q ss_pred HHHHHH
Q 004735 704 EQQMVF 709 (732)
Q Consensus 704 ~~~~~f 709 (732)
+.+.+|
T Consensus 274 ~~i~~~ 279 (280)
T 3qmv_A 274 AHLGTE 279 (280)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 555544
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-14 Score=158.74 Aligned_cols=214 Identities=18% Similarity=0.226 Sum_probs=136.9
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHCC-CEEEEEcCC-CCCCCChhhHHhhccC
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRG-WAFVDVNYG-GSTGYGREFRERLLGR 549 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G-~~v~~~d~r-G~~g~g~~~~~~~~~~ 549 (732)
..+...+|.|... ..+.|+||++|||++...... .....+.|+++| ++|+.+||| |..|++..-... ...
T Consensus 81 dcL~l~v~~P~~~------~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~ 153 (489)
T 1qe3_A 81 DCLYVNVFAPDTP------SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAY 153 (489)
T ss_dssp CCCEEEEEEECSS------CCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTS
T ss_pred CCCEEEEEeCCCC------CCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc-ccC
Confidence 3456667778651 234899999999875432221 122345666664 999999999 333332211000 011
Q ss_pred CCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCcCCHHHHHhhcchhhhh
Q 004735 550 WGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVADLSMLRAETHKFESR 623 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 623 (732)
.+.....|+.++++|+.++ ...|++||+|+|+|+||++++.++.. +++|+++|+.+|..++...... ......
T Consensus 154 ~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~-~~~~~~ 232 (489)
T 1qe3_A 154 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQA-ASTAAA 232 (489)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHH-HHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHH-HHHHHH
Confidence 2223478999999999775 34689999999999999999988873 5789999999998743221111 111111
Q ss_pred hhhhhcC----Ch---------hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004735 624 YIDNLVG----SE---------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690 (732)
Q Consensus 624 ~~~~~~~----~~---------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~g 690 (732)
+.. .++ .. +.+...+++........|.+++++..|..+.+.+..++++..+..++++.+-..++++
T Consensus 233 ~~~-~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp~~~g~~~~Eg 311 (489)
T 1qe3_A 233 FLQ-VLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRDEG 311 (489)
T ss_dssp HHH-HHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCCEEEEEETTGG
T ss_pred HHH-HcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccCCccceEeECCeecCcCHHHHHhcCCCCCCCEEEeeecchh
Confidence 111 111 01 1122222222122334557788999999998888888888888888999999999999
Q ss_pred ccCCC
Q 004735 691 HGFRK 695 (732)
Q Consensus 691 H~~~~ 695 (732)
|.+..
T Consensus 312 ~~~~~ 316 (489)
T 1qe3_A 312 YLFFT 316 (489)
T ss_dssp GGTCC
T ss_pred Hhhcc
Confidence 98754
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.9e-13 Score=134.51 Aligned_cols=224 Identities=13% Similarity=0.116 Sum_probs=126.6
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+...+.. +|.++++... + ..|.||++||.+... ..|......| ..+|.|+++|+||.+.+...
T Consensus 6 ~~~~~~~--~~~~~~~~~~-----------g-~g~~~vllHG~~~~~--~~w~~~~~~l-~~~~~vi~~Dl~G~G~s~~~ 68 (291)
T 3qyj_A 6 EQTIVDT--TEARINLVKA-----------G-HGAPLLLLHGYPQTH--VMWHKIAPLL-ANNFTVVATDLRGYGDSSRP 68 (291)
T ss_dssp EEEEEEC--SSCEEEEEEE-----------C-CSSEEEEECCTTCCG--GGGTTTHHHH-TTTSEEEEECCTTSTTSCCC
T ss_pred ceeEEec--CCeEEEEEEc-----------C-CCCeEEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEcCCCCCCCCCC
Confidence 3444554 6888885543 1 236799999986543 4455556666 46899999999976543221
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh-----
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA----- 615 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~----- 615 (732)
. ....+.....+++.+.+..+++.. ..+++.++|||+||.+++.++. +|+++++++++++.........
T Consensus 69 ~---~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~ 143 (291)
T 3qyj_A 69 A---SVPHHINYSKRVMAQDQVEVMSKL--GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPTHKMYRTTDQEF 143 (291)
T ss_dssp C---CCGGGGGGSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCHHHHHHTCCHHH
T ss_pred C---CCccccccCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCCCcchhhhcchhhh
Confidence 1 000001122334333333333332 2358999999999999999998 9999999999865321100000
Q ss_pred ----------------------h-cchhhhhhhhhh------cC------------Ch-------hhhhhcC-------c
Q 004735 616 ----------------------E-THKFESRYIDNL------VG------------SE-------KDYYEKS-------P 640 (732)
Q Consensus 616 ----------------------~-~~~~~~~~~~~~------~~------------~~-------~~~~~~s-------p 640 (732)
. ...+....+... +. .+ +.|.... .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (291)
T 3qyj_A 144 ATAYYHWFFLIQPDNLPETLIGANPEYYLRKCLEKWGKDFSAFHPQALAEYIRCFSQPAVIHATCEDYRAAATIDLEHDE 223 (291)
T ss_dssp HHHTTHHHHTTCSTTHHHHHHHTCHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHhccCCCchHHHHcCCHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhcCCCcchhHHHHHHcccccchhhcc
Confidence 0 000000000000 00 00 0111100 0
Q ss_pred cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 641 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 641 ~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
.....++++|+|+++|++|.+.+... ....+++.-..++..+++ +||. ...++.+++.+.+.+||..
T Consensus 224 ~~~~~~i~~P~Lvi~G~~D~~~~~~~---~~~~~~~~~~~~~~~~~~-~GH~-~~~E~P~~v~~~i~~fL~~ 290 (291)
T 3qyj_A 224 LDMKQKISCPVLVLWGEKGIIGRKYD---VLATWRERAIDVSGQSLP-CGHF-LPEEAPEETYQAIYNFLTH 290 (291)
T ss_dssp TTTTCCBCSCEEEEEETTSSHHHHSC---HHHHHHTTBSSEEEEEES-SSSC-HHHHSHHHHHHHHHHHHHC
T ss_pred hhcCCccccceEEEecccccccchhh---HHHHHHhhcCCcceeecc-CCCC-chhhCHHHHHHHHHHHHhc
Confidence 11356789999999999997543211 122233333467777886 8994 4567888888999998863
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-12 Score=131.76 Aligned_cols=221 Identities=15% Similarity=0.090 Sum_probs=135.0
Q ss_pred CCeE--EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcC--------CCCCCCCh
Q 004735 471 PGQK--AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY--------GGSTGYGR 540 (732)
Q Consensus 471 ~g~~--i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~--------rG~~g~g~ 540 (732)
.|.. +.+.+|.|.+ .++.|+||.+||+.. ...+||+++.+|+ +|+.|+|.
T Consensus 119 ~g~s~sf~~~i~lP~g-------~~P~Pvii~~~~~~~-------------~~~~G~A~i~f~~~~va~d~~~gsrG~g~ 178 (433)
T 4g4g_A 119 GSKSISFSASIRKPSG-------AGPFPAIIGIGGASI-------------PIPSNVATITFNNDEFGAQMGSGSRGQGK 178 (433)
T ss_dssp TTEEEEEEEEEECCSS-------SCCEEEEEEESCCCS-------------CCCTTSEEEEECHHHHSCCSSGGGTTCSH
T ss_pred CCeeEEEEEEEECCCC-------CCCccEEEEECCCcc-------------ccCCCeEEEEeCCcccccccCCCcCCccc
Confidence 3544 5889999976 567899999997521 1357999999987 45566776
Q ss_pred hhHHhh--ccCCCccc--HHHHHHHHHHHHh----cCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCC---
Q 004735 541 EFRERL--LGRWGIVD--VNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVAD--- 609 (732)
Q Consensus 541 ~~~~~~--~~~~~~~~--~~D~~~~i~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d--- 609 (732)
+.... ...|+... .-++..+++||.+ ...+|++||+++|||+||..++++++..++|+++|+.++..+
T Consensus 179 -f~~ly~~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D~Ri~~vi~~~sg~~G~~ 257 (433)
T 4g4g_A 179 -FYDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALVDRIALTIPQESGAGGAA 257 (433)
T ss_dssp -HHHHHCTTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHCTTCSEEEEESCCTTTTS
T ss_pred -cccccCCccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcCCceEEEEEecCCCCchh
Confidence 33322 23455433 3488999999999 789999999999999999999999997779999999986543
Q ss_pred -HHHHH-----hhc-chhhhhhhh-hhc-CChhhhh---hcCcccc---CCCC-CCCEEEEEeCCCCccChHHHHHHHHH
Q 004735 610 -LSMLR-----AET-HKFESRYID-NLV-GSEKDYY---EKSPINF---VDKF-SCPIILFQGLEDKVVPPDQARKIYKA 673 (732)
Q Consensus 610 -~~~~~-----~~~-~~~~~~~~~-~~~-~~~~~~~---~~sp~~~---~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (732)
++... ... ......... ..+ .+-..|. ..-|..+ +.-+ ..|+|++.| +|..+++......+..
T Consensus 258 ~~R~~~~~~~~Ge~v~~~~~~~ge~~Wf~~~f~~y~~~~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~p~g~~~a~~a 336 (433)
T 4g4g_A 258 CWRISDQQKAAGANIQTAAQIITENPWFSRNFDPHVNSITSVPQDHHLLAALIVPRGLAVFEN-NIDWLGPVSTTGCMAA 336 (433)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHTTTCCCSCTTTGGGTTCGGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTCHHHHHHHHHH
T ss_pred hhhhchhhcccCcchhhhhcccCCccccchhhHhhccccccCCcCHHHHHHhhCCceEEEecC-CCCcCCcHHHHHHHHH
Confidence 22100 000 000000000 000 0111111 0111111 1111 268999999 8888887655433333
Q ss_pred H----HhCCC--CEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCC
Q 004735 674 L----KENGL--PVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 674 l----~~~g~--~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
+ +..|. ++.+....+.+|..... +..+.+.+||+++|++.
T Consensus 337 a~~VY~~lGa~d~l~~~~~ggH~Hc~fp~----~~r~~~~~F~~k~Lkg~ 382 (433)
T 4g4g_A 337 GRLIYKAYGVPNNMGFSLVGGHNHCQFPS----SQNQDLNSYINYFLLGQ 382 (433)
T ss_dssp HHHHHHHHTCGGGEEEEECCSSCTTCCCG----GGHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCccceEEEeeCCCCcccCCH----HHHHHHHHHHHHHhCCC
Confidence 2 23343 56776654545642222 23466789999999864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-12 Score=132.84 Aligned_cols=232 Identities=11% Similarity=0.050 Sum_probs=151.2
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++++...++.|+++|+++ ++....... ......++|+|||++|+++.... ..|+++|+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~--~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~d--------~~i~v~d~~~~~--- 65 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS--NKVTATIPV----GSNPMGAVISPDGTKVYVANAHS--------NDVSIIDTATNN--- 65 (391)
T ss_dssp EEEEEETTTTEEEEEETTT--TEEEEEEEC----SSSEEEEEECTTSSEEEEEEGGG--------TEEEEEETTTTE---
T ss_pred EEEEEcCCCCEEEEEECCC--CeEEEEeec----CCCcceEEECCCCCEEEEECCCC--------CeEEEEECCCCe---
Confidence 4566677788999999987 554433322 12246678999999876665432 589999998887
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-E
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 314 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l 314 (732)
..............+|||||++|++...+ ...|+++|+. +++. ...+... ..+..+.|+|||+ +
T Consensus 66 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~-------~~~v~v~d~~-~~~~--~~~~~~~-----~~~~~~~~s~dg~~l 130 (391)
T 1l0q_A 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMA-------SSTLSVIDTT-SNTV--AGTVKTG-----KSPLGLALSPDGKKL 130 (391)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETT-TTEE--EEEEECS-----SSEEEEEECTTSSEE
T ss_pred EEEEEECCCCccceEECCCCCEEEEEECC-------CCEEEEEECC-CCeE--EEEEeCC-----CCcceEEECCCCCEE
Confidence 54444444466778999999999877522 3459999998 6765 3333333 3457889999999 6
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
++.... . ..|+++|+.+++............ .+.|.+ +++.++++...++ .|+++|+.+++..
T Consensus 131 ~~~~~~-~--~~v~~~d~~~~~~~~~~~~~~~~~---------~~~~~~---dg~~l~~~~~~~~--~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 131 YVTNNG-D--KTVSVINTVTKAVINTVSVGRSPK---------GIAVTP---DGTKVYVANFDSM--SISVIDTVTNSVI 193 (391)
T ss_dssp EEEETT-T--TEEEEEETTTTEEEEEEECCSSEE---------EEEECT---TSSEEEEEETTTT--EEEEEETTTTEEE
T ss_pred EEEeCC-C--CEEEEEECCCCcEEEEEecCCCcc---------eEEECC---CCCEEEEEeCCCC--EEEEEECCCCeEE
Confidence 555433 3 368888998887665543322222 233433 6777777665454 4677788888765
Q ss_pred EeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 395 LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 395 ~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
........+..+ ..++++.++.++.......|+++|+.+++.
T Consensus 194 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 544444455555 444555556555433456799999988764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-11 Score=133.29 Aligned_cols=293 Identities=7% Similarity=-0.037 Sum_probs=173.0
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE-CCEEEEEeCCCCeE
Q 004735 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GDTVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~-~~~i~f~~~~~~~l 167 (732)
..+.+++|+|++.+++.... ++...+|. ..+| +.....+.. .. ..+.....+..++ ++.++++...++.|
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~---~~~i~~~d--~~~g-~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~s~~~d~~v 193 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLE---DEGMDVLD--INSG-QTVRLSPPE-KY--KKKLGFVETISIPEHNELWVSQMQANAV 193 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTT---SSSEEEEE--TTTC-CEEEECCCH-HH--HTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred CCceEEEEeCCCeEEEEeCC---CCeEEEEE--CCCC-eEeeecCcc-cc--cccCCceeEEEEcCCCEEEEEECCCCEE
Confidence 34568899986667666542 35544444 4433 333322211 00 0011112234443 44777787778899
Q ss_pred EEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCce
Q 004735 168 YKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246 (732)
Q Consensus 168 ~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~ 246 (732)
+++|+++ ++. ..+... .......+|+|||+.+++..... ..|+++|+.+++ ...........
T Consensus 194 ~~~d~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~--------~~i~~~d~~~~~---~~~~~~~~~~~ 256 (433)
T 3bws_A 194 HVFDLKT--LAYKATVDLT----GKWSKILLYDPIRDLVYCSNWIS--------EDISVIDRKTKL---EIRKTDKIGLP 256 (433)
T ss_dssp EEEETTT--CCEEEEEECS----SSSEEEEEEETTTTEEEEEETTT--------TEEEEEETTTTE---EEEECCCCSEE
T ss_pred EEEECCC--ceEEEEEcCC----CCCeeEEEEcCCCCEEEEEecCC--------CcEEEEECCCCc---EEEEecCCCCc
Confidence 9999987 443 333322 23346678999999876665322 589999998887 54444444456
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 325 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~ 325 (732)
....|+|||+.|+...............|+++|+. +++.. ..+... ..+..+.|+|||+ +++.... .+
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~--~~~~~~-----~~~~~~~~~~~g~~l~~~~~~-~~-- 325 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLI--DTIGPP-----GNKRHIVSGNTENKIYVSDMC-CS-- 325 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEE--EEEEEE-----ECEEEEEECSSTTEEEEEETT-TT--
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEE--eeccCC-----CCcceEEECCCCCEEEEEecC-CC--
Confidence 77899999999987764432211124679999998 67653 222211 3345789999998 6655443 33
Q ss_pred eEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE------------EEEEEEECCCCce
Q 004735 326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR------------SYLGILDDFGHSL 393 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~------------~~ly~~~~~~~~~ 393 (732)
.|.++|+++++.....+...... .+.|.+ +++.+++.....+. ..|+++++.+++.
T Consensus 326 ~v~v~d~~~~~~~~~~~~~~~~~---------~~~~s~---dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 326 KIEVYDLKEKKVQKSIPVFDKPN---------TIALSP---DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEEEETTTTEEEEEEECSSSEE---------EEEECT---TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEEEECCCCcEEEEecCCCCCC---------eEEEcC---CCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 57778888887655443322222 233432 67777776654332 2788899988876
Q ss_pred EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcC
Q 004735 394 SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 432 (732)
Q Consensus 394 ~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~ 432 (732)
.........+..+ ..++++.++.++..+ ..|++++++
T Consensus 394 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~d--~~i~v~~~~ 431 (433)
T 3bws_A 394 KEFWEAGNQPTGLDVSPDNRYLVISDFLD--HQIRVYRRD 431 (433)
T ss_dssp EEEEECSSSEEEEEECTTSCEEEEEETTT--TEEEEEEET
T ss_pred EEEecCCCCCceEEEcCCCCEEEEEECCC--CeEEEEEec
Confidence 5544444456666 445566666665433 355555544
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=138.46 Aligned_cols=118 Identities=16% Similarity=0.039 Sum_probs=87.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHC---------CCEEEEEcCCCCCCCChh
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR---------GWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~---------G~~v~~~d~rG~~g~g~~ 541 (732)
+|..+++....+.+ ...|.||++||.+++. ..|...+..|++. ||.|+++|++|.+.....
T Consensus 76 ~g~~i~~~~~~~~~--------~~~~plll~HG~~~s~--~~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G~G~S~~~ 145 (388)
T 4i19_A 76 DGATIHFLHVRSPE--------PDATPMVITHGWPGTP--VEFLDIIGPLTDPRAHGGDPADAFHLVIPSLPGFGLSGPL 145 (388)
T ss_dssp TTEEEEEEEECCSS--------TTCEEEEEECCTTCCG--GGGHHHHHHHHCGGGGTSCGGGCEEEEEECCTTSGGGCCC
T ss_pred CCeEEEEEEccCCC--------CCCCeEEEECCCCCCH--HHHHHHHHHHhCcccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 79999977776543 3357899999986543 4566777888776 999999999975432211
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
.. .....+++.+.+..+.++. ..++++++|||+||.+++.++. +|++++++++.+|.
T Consensus 146 -----~~--~~~~~~~~a~~~~~l~~~l--g~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 203 (388)
T 4i19_A 146 -----KS--AGWELGRIAMAWSKLMASL--GYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQ 203 (388)
T ss_dssp -----SS--CCCCHHHHHHHHHHHHHHT--TCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCC
T ss_pred -----CC--CCCCHHHHHHHHHHHHHHc--CCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCC
Confidence 11 1234677777777776653 3468999999999999999998 99999999999864
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-12 Score=131.98 Aligned_cols=202 Identities=13% Similarity=0.084 Sum_probs=117.0
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHH-CCCEEEEEcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHHHHHhcCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d 572 (732)
.|.||++||++. ....|...+..|++ .+|.|+++|+||.+.+...- ...+.. ...+|+.+.++.+... .
T Consensus 38 ~p~lvllHG~~~--~~~~w~~~~~~L~~~~~~~via~Dl~GhG~S~~~~----~~~~~~~~~a~dl~~~l~~l~~~--~- 108 (316)
T 3c5v_A 38 GPVLLLLHGGGH--SALSWAVFTAAIISRVQCRIVALDLRSHGETKVKN----PEDLSAETMAKDVGNVVEAMYGD--L- 108 (316)
T ss_dssp SCEEEEECCTTC--CGGGGHHHHHHHHTTBCCEEEEECCTTSTTCBCSC----TTCCCHHHHHHHHHHHHHHHHTT--C-
T ss_pred CcEEEEECCCCc--ccccHHHHHHHHhhcCCeEEEEecCCCCCCCCCCC----ccccCHHHHHHHHHHHHHHHhcc--C-
Confidence 378999999843 33556677777776 38999999999876543210 001111 1255666666666322 1
Q ss_pred CCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcCCHH--------HHHhh-cchh---h---hhh----------
Q 004735 573 EKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVADLS--------MLRAE-THKF---E---SRY---------- 624 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~d~~--------~~~~~-~~~~---~---~~~---------- 624 (732)
.+++.|+||||||.+++.++. +|+ ++++|++++..... ..... ...+ . ...
T Consensus 109 ~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (316)
T 3c5v_A 109 PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLE 187 (316)
T ss_dssp CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCCHHHHHHHHHHHHHHHHHSCSCBSSHHHHHHHHHHTTSCCCHH
T ss_pred CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcccccchhhhHHHHHHHHhhCccccccHHHHHHHhhhcccccchh
Confidence 268999999999999999987 366 99999887642110 00000 0000 0 000
Q ss_pred -----hhhhcC-Ch-----------hhhh-hcCc--------------cccCCCCCCCEEEEEeCCCCccChHHHHHHHH
Q 004735 625 -----IDNLVG-SE-----------KDYY-EKSP--------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYK 672 (732)
Q Consensus 625 -----~~~~~~-~~-----------~~~~-~~sp--------------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (732)
+...+. .. ..+. .... ...+.++++|+|+++|++|.+.+... ..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lli~g~~D~~~~~~~----~~ 263 (316)
T 3c5v_A 188 SARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLT----IG 263 (316)
T ss_dssp HHHHHHHHHEEECC------------CEEESCCGGGGHHHHHHHHTTHHHHHHHSSSCEEEEESSCCCCCHHHH----HH
T ss_pred hhhhhhhHHhhhccccccccccccccceeeeecccchhhhhhhhhhhhHHHhhcCCCCEEEEEecccccccHHH----HH
Confidence 000000 00 0000 0000 00112578999999999997643211 12
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 673 ALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 673 ~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.+. ...++++++++||.. ..+..+.+.+.+.+||.+.-
T Consensus 264 ~~~---~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~~ 301 (316)
T 3c5v_A 264 QMQ---GKFQMQVLPQCGHAV-HEDAPDKVAEAVATFLIRHR 301 (316)
T ss_dssp HHT---TCSEEEECCCCSSCH-HHHSHHHHHHHHHHHHHHTT
T ss_pred hhC---CceeEEEcCCCCCcc-cccCHHHHHHHHHHHHHhcc
Confidence 222 245899999999964 33567788899999997643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-11 Score=124.34 Aligned_cols=239 Identities=11% Similarity=-0.005 Sum_probs=141.9
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
+.+.++++...++.|.++|+++ ++........ .... .++|+|||+++++..... ..|+++|+++++
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~---~~~~-~~~~s~dg~~l~~~~~~~--------~~i~~~d~~~~~ 73 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDT--LEILNQITLG---YDFV-DTAITSDCSNVVVTSDFC--------QTLVQIETQLEP 73 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTT--CCEEEEEECC---CCEE-EEEECSSSCEEEEEESTT--------CEEEEEECSSSS
T ss_pred CCCEEEEEecCCCeEEEEeCcc--cceeeeEEcc---CCcc-eEEEcCCCCEEEEEeCCC--------CeEEEEECCCCc
Confidence 3456777777778999999987 6554433221 2223 778999999866665422 589999999887
Q ss_pred cccc-EEcccCCCceec-cccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 233 IQEP-KVLVSGSDFYAF-PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 233 ~~~~-~~lt~~~~~~~~-p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
. ............ ..|||||++|+ +. ...+ ....|+++|++ +++. +..+... ..+..+.|+|
T Consensus 74 ---~~~~~~~~~~~~~~~~~~s~dg~~l~-~~-~~~~---~~~~i~v~d~~-~~~~--~~~~~~~-----~~~~~~~~sp 137 (331)
T 3u4y_A 74 ---PKVVAIQEGQSSMADVDITPDDQFAV-TV-TGLN---HPFNMQSYSFL-KNKF--ISTIPIP-----YDAVGIAISP 137 (331)
T ss_dssp ---CEEEEEEECSSCCCCEEECTTSSEEE-EC-CCSS---SSCEEEEEETT-TTEE--EEEEECC-----TTEEEEEECT
T ss_pred ---eeEEecccCCCCccceEECCCCCEEE-Ee-cCCC---CcccEEEEECC-CCCe--EEEEECC-----CCccceEECC
Confidence 5 333322223334 88999999987 44 2211 12379999998 6765 3333333 3356889999
Q ss_pred CCc-EEEEEeccCCe-eeEEEEeccCCeEEE----ecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 311 KGE-LFFVTDRKNGF-WNLHKWIESNNEVLA----IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 311 Dg~-l~~~~~~~~g~-~~l~~~d~~~g~~~~----l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
||+ +++.... .+. ..+|.++.. +.... +..... . ...+.|.+ +++.+|++...++ .|+
T Consensus 138 dg~~l~~~~~~-~~~~i~~~~~~~~-g~~~~~~~~~~~~~~---~------~~~~~~sp---dg~~l~v~~~~~~--~v~ 201 (331)
T 3u4y_A 138 NGNGLILIDRS-SANTVRRFKIDAD-GVLFDTGQEFISGGT---R------PFNITFTP---DGNFAFVANLIGN--SIG 201 (331)
T ss_dssp TSSCEEEEEET-TTTEEEEEEECTT-CCEEEEEEEEECSSS---S------EEEEEECT---TSSEEEEEETTTT--EEE
T ss_pred CCCEEEEEecC-CCceEEEEEECCC-CcEeecCCccccCCC---C------ccceEECC---CCCEEEEEeCCCC--eEE
Confidence 999 6655443 344 556655532 22211 111111 1 12334443 7777777765444 466
Q ss_pred EEECCCCce----EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 385 ILDDFGHSL----SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 385 ~~~~~~~~~----~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
++++++++. ..+..+ ..+..+ ..++++.+|+... ....|+++|+++++.+.+.
T Consensus 202 v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 202 ILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp EEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEEE
T ss_pred EEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeeec
Confidence 667877764 344433 333444 4445555555543 2345999999998875544
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=127.95 Aligned_cols=206 Identities=11% Similarity=-0.004 Sum_probs=123.2
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|.||++||.........|..++..| ..||.|+++|++|.+..... ...+ ....+|+.+.++.+. +.
T Consensus 80 ~~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G~G~~~~~-----~~~~-~~~~~~~~~~l~~~~-----~~ 147 (319)
T 3lcr_A 80 LGPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPGFHGGQAL-----PATL-TVLVRSLADVVQAEV-----AD 147 (319)
T ss_dssp SSCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTTSSTTCCE-----ESSH-HHHHHHHHHHHHHHH-----TT
T ss_pred CCCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCCCCCCCCC-----CCCH-HHHHHHHHHHHHHhc-----CC
Confidence 458899999953234455677777777 78999999999976532111 1000 011233333333332 23
Q ss_pred CcEEEEEcChHHHHHHHHHh-C---CCcceEEEeecCcCCHHH--HHh-hcchhhhhhhh-----hhcCC-h------hh
Q 004735 574 KRLCITGGSAGGYTTLAALA-F---RDTFKAGASLYGVADLSM--LRA-ETHKFESRYID-----NLVGS-E------KD 634 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~---p~~~~a~v~~~~~~d~~~--~~~-~~~~~~~~~~~-----~~~~~-~------~~ 634 (732)
+++.|+|||+||.+++.++. + +++++++|++++...... ... ....+...... ..+.. . ..
T Consensus 148 ~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (319)
T 3lcr_A 148 GEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRITAQVW 227 (319)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Confidence 68999999999999999887 5 888999999876542111 000 00000000000 00000 0 01
Q ss_pred hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 635 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 635 ~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+...........+++|+|+++|++| .+++.....+.+.+.. ..+++++++..|.+..+++..++.+.+.+||.+..
T Consensus 228 ~~~~~~~~~~~~i~~PvLli~g~~~-~~~~~~~~~~~~~~~~---~~~~~~~~g~H~~~~~~~~~~~va~~i~~fL~~~~ 303 (319)
T 3lcr_A 228 CLELLRGWRPEGLTAPTLYVRPAQP-LVEQEKPEWRGDVLAA---MGQVVEAPGDHFTIIEGEHVASTAHIVGDWLREAH 303 (319)
T ss_dssp HHHHTTTCCCCCCSSCEEEEEESSC-SSSCCCTHHHHHHHHT---CSEEEEESSCTTGGGSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCCCEEEEEeCCC-CCCcccchhhhhcCCC---CceEEEeCCCcHHhhCcccHHHHHHHHHHHHHhcc
Confidence 1111111223678999999999984 5666666677776653 45888888743334444688899999999999876
Q ss_pred C
Q 004735 715 G 715 (732)
Q Consensus 715 ~ 715 (732)
.
T Consensus 304 ~ 304 (319)
T 3lcr_A 304 A 304 (319)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.5e-11 Score=122.13 Aligned_cols=242 Identities=10% Similarity=-0.037 Sum_probs=141.3
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCC-CCeEeeceeecCCCCEEEEEEeccCCCCCC---ceeEEEEEE
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQDALN---STTEIVAIA 227 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~---~~~~l~~~d 227 (732)
+++.+++....++.|+++|+.+ ++.. .+...... .......+.|+|||++|++........+.+ ....|+++|
T Consensus 44 dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d 121 (337)
T 1pby_B 44 GGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121 (337)
T ss_dssp TSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCC--CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEE
Confidence 3446777777778999999987 5543 34332100 001235678999999877664211000000 126899999
Q ss_pred cCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
+++++ ...............|||||++|++.+ ..|+++|++ +++. ...+... .......
T Consensus 122 ~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~----------~~i~~~d~~-~~~~--~~~~~~~-----~~~~~~~ 180 (337)
T 1pby_B 122 AETLS---RRKAFEAPRQITMLAWARDGSKLYGLG----------RDLHVMDPE-AGTL--VEDKPIQ-----SWEAETY 180 (337)
T ss_dssp TTTTE---EEEEEECCSSCCCEEECTTSSCEEEES----------SSEEEEETT-TTEE--EEEECST-----TTTTTTB
T ss_pred CCCCc---EEEEEeCCCCcceeEECCCCCEEEEeC----------CeEEEEECC-CCcE--eeeeecc-----ccCCCce
Confidence 99876 443333233445678999999987762 239999998 7765 3333322 1123558
Q ss_pred eCCCCc-EEEEEeccCCe---------------------eeEEEEeccCCeEEEecccccccCCCceeecccceeeeeec
Q 004735 308 WSSKGE-LFFVTDRKNGF---------------------WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSH 365 (732)
Q Consensus 308 wspDg~-l~~~~~~~~g~---------------------~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~ 365 (732)
|+|||+ +++.... .+. ..|+++|+.+++.+.+...... .. ...+.|.+
T Consensus 181 ~s~dg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~------~~~~~~s~-- 250 (337)
T 1pby_B 181 AQPDVLAVWNQHES-SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD-VF------YFSTAVNP-- 250 (337)
T ss_dssp CCCBCCCCCCCCTT-TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS-SC------EEEEEECT--
T ss_pred eCCCccEEeeeccC-CCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCC-Cc------eeeEEECC--
Confidence 999998 6544322 222 1688999998877633311100 01 11234443
Q ss_pred CCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 366 GEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 366 ~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+++.+++. ...|+++++++++..........+..+ ..++++.+++++. ...|+++|+++++.
T Consensus 251 -dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 251 -AKTRAFGA-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA---LGDLAAYDAETLEK 313 (337)
T ss_dssp -TSSEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB---SSEEEEEETTTCCE
T ss_pred -CCCEEEEe-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcC---CCcEEEEECcCCcE
Confidence 77777766 257888899888754333222334444 3444555555432 46799999988864
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-11 Score=125.37 Aligned_cols=259 Identities=10% Similarity=0.047 Sum_probs=142.2
Q ss_pred ECCEEEEEeCCCCeEEEEeCC--CCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSID--SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~--~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
++..+++....++.|.+++++ + +..+.+..... ......++|+|||++|++..... ..|++++++.
T Consensus 48 dg~~l~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~--------~~i~~~d~~~ 115 (343)
T 1ri6_A 48 DKRYLYVGVRPEFRVLAYRIAPDD--GALTFAAESAL--PGSLTHISTDHQGQFVFVGSYNA--------GNVSVTRLED 115 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTT--CCEEEEEEEEC--SSCCSEEEECTTSSEEEEEETTT--------TEEEEEEEET
T ss_pred CCCEEEEeecCCCeEEEEEecCCC--Cceeecccccc--CCCCcEEEEcCCCCEEEEEecCC--------CeEEEEECCC
Confidence 344677776655778887776 5 55544432110 11336678999999876665422 4677777742
Q ss_pred CCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeE--EecCCCCCccccCcCcee
Q 004735 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV--CVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 231 ~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~--~~~~~~~~~~~~~~~~~w 308 (732)
+...................|||||++|+..... ...|+++|+..+|+..... ...... . ..+..+.|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~ 185 (343)
T 1ri6_A 116 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-------QDRICLFTVSDDGHLVAQDPAEVTTVE-G--AGPRHMVF 185 (343)
T ss_dssp TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEEEECST-T--CCEEEEEE
T ss_pred CccccccccccCCCCceEEEECCCCCEEEEecCC-------CCEEEEEEecCCCceeeecccccccCC-C--CCcceEEE
Confidence 2200023333333445668899999988665422 3459999998337664332 222221 1 34456889
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecc---cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
+|||+ +++.... .+...+|.++..+++.+.+.. .........+ ...+.|.+ +++.|+++...++.-.+|
T Consensus 186 ~pdg~~l~~~~~~-~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~i~~s~---dg~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 186 HPNEQYAYCVNEL-NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW---AADIHITP---DGRHLYACDRTASLITVF 258 (343)
T ss_dssp CTTSSEEEEEETT-TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC---EEEEEECT---TSSEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEeCC-CCEEEEEEecCCCCcEEEEeeccccCccccccCC---ccceEECC---CCCEEEEEecCCCEEEEE
Confidence 99999 5555433 454445444435565433221 1111111111 11234443 677777666556666666
Q ss_pred EEECCCCceEEecc--CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 385 ILDDFGHSLSLLDI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 385 ~~~~~~~~~~~lt~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
.++.+++..+.+.. ....+..+ ..++++.++++...+..-.+|.+|.++++.+++.
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp EECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred EEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 66544665544422 12224444 4455666666665555566888888888765544
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-10 Score=126.37 Aligned_cols=241 Identities=10% Similarity=0.016 Sum_probs=151.7
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCC--CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
++.+++....++.|+++|+.+ ++..+..... ..+........|+|+|+. +++.... ..|+++|++++
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~s~~~d--------~~v~~~d~~~~ 201 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINS--GQTVRLSPPEKYKKKLGFVETISIPEHNEL-WVSQMQA--------NAVHVFDLKTL 201 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTT--CCEEEECCCHHHHTTCCEEEEEEEGGGTEE-EEEEGGG--------TEEEEEETTTC
T ss_pred CCeEEEEeCCCCeEEEEECCC--CeEeeecCcccccccCCceeEEEEcCCCEE-EEEECCC--------CEEEEEECCCc
Confidence 557888877777899999987 6555433210 011234566789999875 4443322 58999999887
Q ss_pred CccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 232 NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 232 ~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
+. ...+...........|+|||++|++.... ...|+++|+. +++. ...+... ..+..+.|+||
T Consensus 202 ~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~i~~~d~~-~~~~--~~~~~~~-----~~~~~~~~~~~ 264 (433)
T 3bws_A 202 AY--KATVDLTGKWSKILLYDPIRDLVYCSNWI-------SEDISVIDRK-TKLE--IRKTDKI-----GLPRGLLLSKD 264 (433)
T ss_dssp CE--EEEEECSSSSEEEEEEETTTTEEEEEETT-------TTEEEEEETT-TTEE--EEECCCC-----SEEEEEEECTT
T ss_pred eE--EEEEcCCCCCeeEEEEcCCCCEEEEEecC-------CCcEEEEECC-CCcE--EEEecCC-----CCceEEEEcCC
Confidence 61 23333334456678999999988766522 3459999998 6755 3444433 44678899999
Q ss_pred Cc-EEEEEeccC----CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 312 GE-LFFVTDRKN----GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 312 g~-l~~~~~~~~----g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
|+ +++...... +...|+++|+.+++...............|++ +++.++++...++ .|+++
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~------------~g~~l~~~~~~~~--~v~v~ 330 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGN------------TENKIYVSDMCCS--KIEVY 330 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECS------------STTEEEEEETTTT--EEEEE
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECC------------CCCEEEEEecCCC--EEEEE
Confidence 98 555543311 24578999998887655542222222233332 6777887766555 46666
Q ss_pred ECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCC------------cEEEEEEcCCCcc
Q 004735 387 DDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEP------------SSVAKVTLDDHKL 436 (732)
Q Consensus 387 ~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~------------~~ly~~dl~~~~~ 436 (732)
++++++..........+..+ ..++++.+++....... ..|+++|+++++.
T Consensus 331 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 331 DLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp ETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred ECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 88777655443444456666 44555556666554432 3899999988764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.6e-11 Score=122.50 Aligned_cols=234 Identities=10% Similarity=-0.007 Sum_probs=139.3
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
++++...++.|+++|+.+ ++.. .+..... ......++|||||+++++..... ..|+++|+.+++
T Consensus 3 ~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d~~~~~--- 67 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEK--MAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGE--- 67 (337)
T ss_dssp EEEEEETTTEEEEEETTT--TEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCC---
T ss_pred EEEEcCCCCeEEEEECCC--CcEEEEEEcCCC--CCCccceEEcCCCCEEEEEeCCC--------CeEEEEECCCCC---
Confidence 456666778999999987 5443 3332210 00236678999999876655422 589999999887
Q ss_pred cEE-cccCC-C----ceeccccCCCCCeEEEEeccCC-CCCC---CccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 236 PKV-LVSGS-D----FYAFPRMDPRGERMAWIEWHHP-NMPW---DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 236 ~~~-lt~~~-~----~~~~p~~SPDG~~la~~~~~~~-~~~~---~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
... +..+. . ......|||||++|++...... ...+ ....|+++|++ +++. ...+... ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~--~~~~~~~-----~~~~~ 139 (337)
T 1pby_B 68 TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSR--RKAFEAP-----RQITM 139 (337)
T ss_dssp EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEE--EEEEECC-----SSCCC
T ss_pred eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC-CCcE--EEEEeCC-----CCcce
Confidence 433 33221 1 3346789999999987742100 0001 13679999998 6765 2333332 34567
Q ss_pred ceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE----
Q 004735 306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---- 380 (732)
Q Consensus 306 ~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~---- 380 (732)
+.|+|||+ +++. + ..|+++|+.+++...............|++ +++.+++.....+.
T Consensus 140 ~~~s~dg~~l~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~------------dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 140 LAWARDGSKLYGL-G-----RDLHVMDPEAGTLVEDKPIQSWEAETYAQP------------DVLAVWNQHESSGVMATP 201 (337)
T ss_dssp EEECTTSSCEEEE-S-----SSEEEEETTTTEEEEEECSTTTTTTTBCCC------------BCCCCCCCCTTTTEEEEE
T ss_pred eEECCCCCEEEEe-C-----CeEEEEECCCCcEeeeeeccccCCCceeCC------------CccEEeeeccCCCceeee
Confidence 89999999 6665 2 248899999887665443222112334554 33333332221111
Q ss_pred -----------------EEEEEEECCCCceEEeccC--CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 381 -----------------SYLGILDDFGHSLSLLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 381 -----------------~~ly~~~~~~~~~~~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..|+++++++++...++.. ...+..+ ..++++.+++.. ..|+++|+++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~v~~~d~~~~~~ 272 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNAS 272 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEE
T ss_pred eeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeC-----CeEEEEECCCCcC
Confidence 2689999999887644332 2234444 344555555552 5799999988764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-10 Score=119.98 Aligned_cols=237 Identities=9% Similarity=-0.002 Sum_probs=140.5
Q ss_pred CCEEEEEeCC------CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 154 GDTVIFSNYK------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 154 ~~~i~f~~~~------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
++.+++.... ++.|+++|+++ ++....... ......+.|+|||+++++..... ..|+++|
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d 117 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVT--LEVTQAIHN----DLKPFGATINNTTQTLWFGNTVN--------SAVTAID 117 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTT--CCEEEEEEE----SSCCCSEEEETTTTEEEEEETTT--------TEEEEEE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCC--CeEEEEEec----CCCcceEEECCCCCEEEEEecCC--------CEEEEEe
Confidence 3456555533 45899999987 554332222 11235678999999866654422 5899999
Q ss_pred cCCCCcccc-EEcccCCC---------ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 228 LNGQNIQEP-KVLVSGSD---------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 228 ~~~~~~~~~-~~lt~~~~---------~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
+++++ . ..+..+.. ......|||||++|++..... ...|+++|++ +++. ...+....
T Consensus 118 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~~i~~~d~~-~~~~--~~~~~~~~- 184 (353)
T 3vgz_A 118 AKTGE---VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK------ESVIWVVDGG-NIKL--KTAIQNTG- 184 (353)
T ss_dssp TTTCC---EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS------SCEEEEEETT-TTEE--EEEECCCC-
T ss_pred CCCCe---eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC------CceEEEEcCC-CCce--EEEecCCC-
Confidence 99887 4 33332211 134578999999887665322 3569999998 6765 34444222
Q ss_pred CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEE
Q 004735 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~ 377 (732)
..+..+.|+|||+.+|.++. . ..|+++|+.+++.......... .+.. ....+.|.+ +++.+|+...
T Consensus 185 ---~~~~~~~~s~dg~~l~~~~~-~--~~i~~~d~~~~~~~~~~~~~~~--~~~~--~~~~~~~s~---dg~~l~~~~~- 250 (353)
T 3vgz_A 185 ---KMSTGLALDSEGKRLYTTNA-D--GELITIDTADNKILSRKKLLDD--GKEH--FFINISLDT---ARQRAFITDS- 250 (353)
T ss_dssp ---TTCCCCEEETTTTEEEEECT-T--SEEEEEETTTTEEEEEEECCCS--SSCC--CEEEEEEET---TTTEEEEEES-
T ss_pred ---CccceEEECCCCCEEEEEcC-C--CeEEEEECCCCeEEEEEEcCCC--CCCc--ccceEEECC---CCCEEEEEeC-
Confidence 34678899999994444444 2 3688899998876544322100 0000 011233443 7777776653
Q ss_pred CCEEEEEEEECCCCceE-EeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 378 NGRSYLGILDDFGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 378 ~g~~~ly~~~~~~~~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+...|+++|+.+++.. .+..+.. ..+ ..++++.+|+....+ ..|+++|+.+++.
T Consensus 251 -~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~--~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 251 -KAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQA--GKVSVIDAKSYKV 306 (353)
T ss_dssp -SSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTT--TEEEEEETTTTEE
T ss_pred -CCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCC--CeEEEEECCCCeE
Confidence 3346888899887754 3443332 123 334444444444322 4799999888764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=121.27 Aligned_cols=268 Identities=9% Similarity=-0.005 Sum_probs=142.1
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE--CCEEEEEeCCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQ 165 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~--~~~i~f~~~~~~ 165 (732)
..+..++|+| |+ +|.+.... +++...+|.. .+| +.+.+.... ........++++ +..+++....++
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~-~~~~v~~~~~--~~g-~~~~~~~~~------~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKED-DEGGIAAWQI--DGQ-TAHKLNTVV------APGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEET-TEEEEEEEEE--ETT-EEEEEEEEE------EESCCCSEEEEETTTTEEEEEETTTT
T ss_pred CCcceEEEccCCe-EEEEEecC-CCceEEEEEe--cCC-cEEEeeeee------cCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 4677899999 66 88776532 2344444444 322 322221100 011112234444 446777776677
Q ss_pred eEEEEeCCCCCCCceecCCC---CCC-----CCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC-CCCcccc
Q 004735 166 RLYKHSIDSKDSSPLPITPD---YGE-----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNIQEP 236 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~---~~~-----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~~ 236 (732)
.+.+++++.. +..+.+... ... .......++|+|||+ +++... . ...|++++++ +++ .
T Consensus 109 ~v~v~~~~~~-g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~-~-------~~~v~~~~~~~~g~---~ 175 (347)
T 3hfq_A 109 TAEVMKIAAD-GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL-G-------SDKVYVYNVSDAGQ---L 175 (347)
T ss_dssp EEEEEEECTT-SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET-T-------TTEEEEEEECTTSC---E
T ss_pred EEEEEEeCCC-CCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC-C-------CCEEEEEEECCCCc---E
Confidence 7888887531 444433211 000 011234578999999 544432 2 1478888887 555 3
Q ss_pred EEcc---c-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC-CCceeeeEEecCCCCCc--cccCcCceeC
Q 004735 237 KVLV---S-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTI--VESPTEPKWS 309 (732)
Q Consensus 237 ~~lt---~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~-~g~~~~~~~~~~~~~~~--~~~~~~~~ws 309 (732)
..+. . ........+|||||++|++.... ...+.+++++. +|+......+......+ ...+..++|+
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL-------SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS 248 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETT-------TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCC-------CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence 3321 1 11123456899999988776522 23477777762 36554333333221000 0124568899
Q ss_pred CCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 310 pDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|||+ ||+.... .+...+|.++. +|+.+.+......... ...+.|.+ +++.|++....++...||.++.
T Consensus 249 pdG~~l~v~~~~-~~~v~v~~~~~-~g~~~~~~~~~~~~~~------~~~~~~sp---dg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 249 HDGHFLYVSNRG-YNTLAVFAVTA-DGHLTLIQQISTEGDF------PRDFDLDP---TEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp TTSCEEEEEEET-TTEEEEEEECG-GGCEEEEEEEECSSSC------CCEEEECT---TSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCEEEEEeCC-CCEEEEEEECC-CCcEEEeEEEecCCCC------cCeEEECC---CCCEEEEEEcCCCcEEEEEEeC
Confidence 9999 5544433 45545555443 3444443321110011 12334443 7777877776668888999999
Q ss_pred CCCceEEecc
Q 004735 389 FGHSLSLLDI 398 (732)
Q Consensus 389 ~~~~~~~lt~ 398 (732)
++|+++.+..
T Consensus 318 ~tg~l~~~~~ 327 (347)
T 3hfq_A 318 TSGKLSLLQK 327 (347)
T ss_dssp TTCCEEEEEE
T ss_pred CCCeEEeccc
Confidence 9998876653
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-12 Score=125.88 Aligned_cols=210 Identities=10% Similarity=-0.044 Sum_probs=123.8
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCE---EE----------EEcCCCCCCCChhhHHhhc--cCCC-cccHHHHH
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWA---FV----------DVNYGGSTGYGREFRERLL--GRWG-IVDVNDCC 559 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~---v~----------~~d~rG~~g~g~~~~~~~~--~~~~-~~~~~D~~ 559 (732)
+.||++||.+. ....|..++..|+++++. ++ .+|-++....+........ .... ....+|+.
T Consensus 4 ~pvvllHG~~~--~~~~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 81 (254)
T 3ds8_A 4 IPIILIHGSGG--NASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLK 81 (254)
T ss_dssp CCEEEECCTTC--CTTTTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHHHHHHH
T ss_pred CCEEEECCCCC--CcchHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHHHHHHH
Confidence 44789999843 445678888999988753 33 3332111111111000000 0000 01255666
Q ss_pred HHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC-----cceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChh
Q 004735 560 SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD-----TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEK 633 (732)
Q Consensus 560 ~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~-----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 633 (732)
++++.+.++..+ +++.++||||||.+++.++. +|+ +++++|++++..+..........+.... ......
T Consensus 82 ~~i~~l~~~~~~--~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~---~p~~~~ 156 (254)
T 3ds8_A 82 IAMEDLKSRYGF--TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFKK---LPNSTP 156 (254)
T ss_dssp HHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCSCTTCSS---CSSCCH
T ss_pred HHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCccccccccccccccc---CCcchH
Confidence 677888776433 68999999999999999988 887 8999999998765432221111110000 000011
Q ss_pred hhhhcC-ccccCCCCCCCEEEEEeC------CCCccChHHHHHHHHHHHhCCCCEEEEEeCC--CCccCCCcccHHHHHH
Q 004735 634 DYYEKS-PINFVDKFSCPIILFQGL------EDKVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKAENIKFTLE 704 (732)
Q Consensus 634 ~~~~~s-p~~~~~~i~~P~Lii~G~------~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~~~~~~~~~ 704 (732)
.|.... ....+.+ ++|+|.|+|. .|.+||+..++.+...++......+.+++.+ ++|.... ++ .++.+
T Consensus 157 ~~~~~~~~~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~~~~~~~~g~~a~Hs~l~-~~-~~v~~ 233 (254)
T 3ds8_A 157 QMDYFIKNQTEVSP-DLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVGEDAVHQTLH-ET-PKSIE 233 (254)
T ss_dssp HHHHHHHTGGGSCT-TCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSEEEEEEEESGGGCGGGGG-GS-HHHHH
T ss_pred HHHHHHHHHhhCCC-CcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcceEEEEEeCCCCchhccc-CC-HHHHH
Confidence 111110 0112222 6899999999 9999999999888777765444456666666 6686533 33 35788
Q ss_pred HHHHHHHHHhC
Q 004735 705 QQMVFFARVVG 715 (732)
Q Consensus 705 ~~~~fl~~~l~ 715 (732)
.+..||+++..
T Consensus 234 ~i~~fL~~~~~ 244 (254)
T 3ds8_A 234 KTYWFLEKFKT 244 (254)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHHhcC
Confidence 88888887754
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-12 Score=131.97 Aligned_cols=201 Identities=9% Similarity=-0.016 Sum_probs=120.2
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHH-HHHhcCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGK 570 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~ 570 (732)
....|.||++||.+.......|......|. .+|.|+.+|++|.+..... ...++++.+.+. .+.+.
T Consensus 64 ~~~~~~lvllhG~~~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~----------~~~~~~~a~~~~~~l~~~-- 130 (300)
T 1kez_A 64 GPGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPGYEEGEPL----------PSSMAAVAAVQADAVIRT-- 130 (300)
T ss_dssp CSCSSEEEECCCSSTTCSTTTTHHHHHHTS-SSCCBCCCCCTTSSTTCCB----------CSSHHHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEECCCcccCcHHHHHHHHHhcC-CCceEEEecCCCCCCCCCC----------CCCHHHHHHHHHHHHHHh--
Confidence 345689999999854332255666666554 4699999999976542110 123444444433 44443
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEeecCcCCHHH-HHhhcchhhhhhhhhhcCC------------hh
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVADLSM-LRAETHKFESRYIDNLVGS------------EK 633 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p---~~~~a~v~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~------------~~ 633 (732)
.+.+++.|+|||+||.+++.++. +| ++++++|++++...... ... .+.......++.. ..
T Consensus 131 ~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (300)
T 1kez_A 131 QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMN---AWLEELTATLFDRETVRMDDTRLTALG 207 (300)
T ss_dssp CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHH---HHHHHHHGGGCCCCSSCCCHHHHHHHH
T ss_pred cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHH---HHHHHHHHHHHhCcCCccchHHHHHHH
Confidence 23468999999999999999988 77 58999999987653221 100 0000111111110 01
Q ss_pred hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC-CCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 634 DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN-GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 634 ~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~-g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
.|...-......++++|+|+++|+ |..+++.. .. +.+. ..+.+++++++ ||.....+....+.+.+.+||.+
T Consensus 208 ~~~~~~~~~~~~~i~~P~lii~G~-d~~~~~~~-~~----~~~~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i~~fl~~ 280 (300)
T 1kez_A 208 AYDRLTGQWRPRETGLPTLLVSAG-EPMGPWPD-DS----WKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLGG 280 (300)
T ss_dssp HHHHHTTTCCCCCCSCCBEEEEES-SCSSCCCS-SC----CSCCCSSCCEEEEESS-CTTTSSSSCSHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCCCCCEEEEEeC-CCCCCCcc-cc----hhhhcCCCCeEEEecC-CChhhccccHHHHHHHHHHHHHh
Confidence 111111112346789999999995 55665543 12 2222 22468999999 99765336677888888888876
Q ss_pred HhC
Q 004735 713 VVG 715 (732)
Q Consensus 713 ~l~ 715 (732)
...
T Consensus 281 ~~~ 283 (300)
T 1kez_A 281 GNS 283 (300)
T ss_dssp C--
T ss_pred ccC
Confidence 554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-10 Score=118.60 Aligned_cols=264 Identities=7% Similarity=-0.012 Sum_probs=146.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE--CCEEEEEeCCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQ 165 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~--~~~i~f~~~~~~ 165 (732)
..+..++|+| |+.+++.... .+...+|..+..+| +.+.+.... . ......+.++ +..+++....++
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~---~~~v~~~~~~~~~~-~~~~~~~~~------~-~~~~~~~~~s~dg~~l~~~~~~~~ 106 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRP---EFRVLAYRIAPDDG-ALTFAAESA------L-PGSLTHISTDHQGQFVFVGSYNAG 106 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETT---TTEEEEEEECTTTC-CEEEEEEEE------C-SSCCSEEEECTTSSEEEEEETTTT
T ss_pred CCCceEEECCCCCEEEEeecC---CCeEEEEEecCCCC-ceeeccccc------c-CCCCcEEEEcCCCCEEEEEecCCC
Confidence 3567899999 7778877642 36667777664432 322221100 0 0022334444 446777776677
Q ss_pred eEEEEeCCCCC-CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC-CCccccEE-----
Q 004735 166 RLYKHSIDSKD-SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQEPKV----- 238 (732)
Q Consensus 166 ~l~~~d~~~~~-~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~----- 238 (732)
.|++++++.+. ......... ......+.|+|||++|+...... ..|+++++.+ ++ ...
T Consensus 107 ~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~--------~~v~~~d~~~~~~---~~~~~~~~ 171 (343)
T 1ri6_A 107 NVSVTRLEDGLPVGVVDVVEG----LDGCHSANISPDNRTLWVPALKQ--------DRICLFTVSDDGH---LVAQDPAE 171 (343)
T ss_dssp EEEEEEEETTEEEEEEEEECC----CTTBCCCEECTTSSEEEEEEGGG--------TEEEEEEECTTSC---EEEEEEEE
T ss_pred eEEEEECCCCccccccccccC----CCCceEEEECCCCCEEEEecCCC--------CEEEEEEecCCCc---eeeecccc
Confidence 88888884200 122222222 11246678999999875554222 5788989887 65 332
Q ss_pred ccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC-CCceeeeEEecCCCCC--ccccCcCceeCCCCcE
Q 004735 239 LVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPT--IVESPTEPKWSSKGEL 314 (732)
Q Consensus 239 lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~-~g~~~~~~~~~~~~~~--~~~~~~~~~wspDg~l 314 (732)
+.. .........|+|||++|++.... ...|.+++++. +|+............. -...+..+.|+|||+.
T Consensus 172 ~~~~~~~~~~~~~~~pdg~~l~~~~~~-------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 172 VTTVEGAGPRHMVFHPNEQYAYCVNEL-------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EECSTTCCEEEEEECTTSSEEEEEETT-------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred cccCCCCCcceEEECCCCCEEEEEeCC-------CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 221 12234457899999988776522 34588888852 4554333333211100 0012335899999994
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEEecc--cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLAIYS--LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~--~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
+|.+....+...+|.++..+++.+.+.. ....... +.|.+ +++.|++....++...+|.++.++++
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---------~~~s~---dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRG---------FNVDH---SGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCC---------EEECT---TSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccce---------EEECC---CCCEEEEecCCCCeEEEEEEcCCCce
Confidence 4444432454444444333555554431 1111222 33432 77777777666788889999998887
Q ss_pred eEEec
Q 004735 393 LSLLD 397 (732)
Q Consensus 393 ~~~lt 397 (732)
++.+.
T Consensus 313 ~~~~~ 317 (343)
T 1ri6_A 313 LHEKG 317 (343)
T ss_dssp EEEEE
T ss_pred eeEcc
Confidence 66554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-10 Score=120.15 Aligned_cols=255 Identities=11% Similarity=0.070 Sum_probs=135.3
Q ss_pred EEECCEEEEEeCC---CCeE--EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 151 RIFGDTVIFSNYK---DQRL--YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 151 ~~~~~~i~f~~~~---~~~l--~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
++++..|++.... .+.| |.++.++ +..+++...... .......++ ||++|++..... ..|.+
T Consensus 58 spdg~~l~~~~~~~~~~~~v~~~~~~~~~--g~~~~~~~~~~~-~~~p~~~~~--dg~~l~~~~~~~--------~~v~~ 124 (361)
T 3scy_A 58 SADGKFVYSVNEFSKDQAAVSAFAFDKEK--GTLHLLNTQKTM-GADPCYLTT--NGKNIVTANYSG--------GSITV 124 (361)
T ss_dssp CTTSSEEEEEECCSSTTCEEEEEEEETTT--TEEEEEEEEECS-SSCEEEEEE--CSSEEEEEETTT--------TEEEE
T ss_pred CCCCCEEEEEEccCCCCCcEEEEEEeCCC--CcEEEeeEeccC-CCCcEEEEE--CCCEEEEEECCC--------CEEEE
Confidence 3334467766653 3555 5555544 555555422100 111223334 899866554322 46777
Q ss_pred EEcCCCCccccEEcc-----cCCC---------ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCC-----c-
Q 004735 226 IALNGQNIQEPKVLV-----SGSD---------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-----D- 285 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt-----~~~~---------~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g-----~- 285 (732)
++++.... ...+. .+.. ......|||||++|++.... ...+++++++..+ +
T Consensus 125 ~~~~~~g~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-------~~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 125 FPIGQDGA--LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-------TDQIHKFNINPNANADNKEK 195 (361)
T ss_dssp EEBCTTSC--BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-------TTEEEEEEECTTCCTTTCCC
T ss_pred EEeCCCCc--CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-------CCEEEEEEEcCCCCcccccc
Confidence 78764220 21111 1111 12347899999998876522 3457888776322 2
Q ss_pred eeee----EEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceee
Q 004735 286 VYKR----VCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI 361 (732)
Q Consensus 286 ~~~~----~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~ 361 (732)
+... ....... ..+..+.|+|||+.+|+.+...+ .|.++++++++.+.+......... ......+.|
T Consensus 196 l~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~--~v~v~~~~~g~~~~~~~~~~~~~~---~~~~~~i~~ 266 (361)
T 3scy_A 196 FLTKGTPEAFKVAPG----SGPRHLIFNSDGKFAYLINEIGG--TVIAFRYADGMLDEIQTVAADTVN---AQGSGDIHL 266 (361)
T ss_dssp CEEEEEEEEEECCTT----CCEEEEEECTTSSEEEEEETTTC--EEEEEEEETTEEEEEEEEESCSSC---CCCEEEEEE
T ss_pred eeecccccceecCCC----CCCeEEEEcCCCCEEEEEcCCCC--eEEEEEecCCceEEeEEEecCCCC---CCCcccEEE
Confidence 2111 1111222 34567899999994444443134 466666667776554321110000 001123455
Q ss_pred eeecCCCCEEEEEEEE-CCEEEEEEEECCCCceEEeccC--CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 362 IQSHGEKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 362 ~~~~~~~~~l~~~s~~-~g~~~ly~~~~~~~~~~~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
.+ +++.||++... ++.-.||.++.++++.+.+... ...+..+ ..+++++++++......-.+|.+|+++++++
T Consensus 267 sp---dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 267 SP---DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp CT---TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CC---CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 54 77777766655 5777888887677776554321 2234445 4556667777766666666888998888864
Q ss_pred ee
Q 004735 438 AV 439 (732)
Q Consensus 438 ~l 439 (732)
.+
T Consensus 344 ~~ 345 (361)
T 3scy_A 344 DI 345 (361)
T ss_dssp EC
T ss_pred ec
Confidence 43
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=132.90 Aligned_cols=144 Identities=16% Similarity=0.166 Sum_probs=98.1
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcce-EEEeecCcCCHHHHHhhcchhhhhhhhhhcC---C----hhhhhh
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFK-AGASLYGVADLSMLRAETHKFESRYIDNLVG---S----EKDYYE 637 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~-a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~ 637 (732)
++..+|++||+|+|+|+||++++.++. +|++|+ +++++++......... . ...++...+. . .+.+..
T Consensus 4 ~~~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~ 79 (318)
T 2d81_A 4 PAFNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQ-Y---YTSCMYNGYPSITTPTANMKSWSG 79 (318)
T ss_dssp CCCCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSS-C---GGGGSTTCCCCCHHHHHHHHHHBT
T ss_pred HhcCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchH-H---HHHHhhccCCCCCCHHHHHHHhhc
Confidence 346789999999999999999998887 999999 8777765321110000 0 0000000000 0 011111
Q ss_pred cCccccCCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCC--CEEEEEeCCCCccCCCccc----------------
Q 004735 638 KSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL--PVALVEYEGEQHGFRKAEN---------------- 698 (732)
Q Consensus 638 ~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~--~~~~~~~~~~gH~~~~~~~---------------- 698 (732)
+++..+.+++ .|+||+||++|.+||+++++++++.|++.+. +++++++++++|++.....
T Consensus 80 -~~i~~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi~ 158 (318)
T 2d81_A 80 -NQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYIS 158 (318)
T ss_dssp -TTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEE
T ss_pred -ccCChhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCCCccc
Confidence 4455455544 6899999999999999999999999998883 7899999999998643221
Q ss_pred --HHHHHHHHHHHHHHHhC
Q 004735 699 --IKFTLEQQMVFFARVVG 715 (732)
Q Consensus 699 --~~~~~~~~~~fl~~~l~ 715 (732)
..+....+++||...++
T Consensus 159 ~~~~d~~~~i~~ff~g~~~ 177 (318)
T 2d81_A 159 NCNYDGAGAALKWIYGSLN 177 (318)
T ss_dssp ECSSCHHHHHHHHHHSSCC
T ss_pred CCCChHHHHHHHHHhccCC
Confidence 24566788999977664
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.7e-11 Score=125.66 Aligned_cols=228 Identities=16% Similarity=0.052 Sum_probs=136.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHH------CCCEEEEEcCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS------RGWAFVDVNYGGS 535 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~------~G~~v~~~d~rG~ 535 (732)
.++.+.. +|..+++....+.. ...|.||++||++++. ..|...+..|++ .||.|+++|++|.
T Consensus 86 ~~~~~~i--~g~~i~~~~~~~~~--------~~~~pllllHG~~~s~--~~~~~~~~~L~~~~~~~~~gf~vv~~DlpG~ 153 (408)
T 3g02_A 86 PQFTTEI--EGLTIHFAALFSER--------EDAVPIALLHGWPGSF--VEFYPILQLFREEYTPETLPFHLVVPSLPGY 153 (408)
T ss_dssp CEEEEEE--TTEEEEEEEECCSC--------TTCEEEEEECCSSCCG--GGGHHHHHHHHHHCCTTTCCEEEEEECCTTS
T ss_pred CCEEEEE--CCEEEEEEEecCCC--------CCCCeEEEECCCCCcH--HHHHHHHHHHhcccccccCceEEEEECCCCC
Confidence 3444444 79999987776543 2346799999986543 456677788877 5899999999976
Q ss_pred CCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH---
Q 004735 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--- 611 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~--- 611 (732)
+.+.... .. .....+++.+.+..+.++..++ ++++++|||+||.+++.++. +|+.+...+..++.....
T Consensus 154 G~S~~~~---~~---~~~~~~~~a~~~~~l~~~lg~~-~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~~~~~~~ 226 (408)
T 3g02_A 154 TFSSGPP---LD---KDFGLMDNARVVDQLMKDLGFG-SGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMSAPPEGP 226 (408)
T ss_dssp TTSCCSC---SS---SCCCHHHHHHHHHHHHHHTTCT-TCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCCCTTCC
T ss_pred CCCCCCC---CC---CCCCHHHHHHHHHHHHHHhCCC-CCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCCCCcccc
Confidence 6433221 01 1234666777666666653322 38999999999999999988 877665555544433210
Q ss_pred ---HH-------Hhhcchhh----------------------------hhhh-hhh--cCC-------------------
Q 004735 612 ---ML-------RAETHKFE----------------------------SRYI-DNL--VGS------------------- 631 (732)
Q Consensus 612 ---~~-------~~~~~~~~----------------------------~~~~-~~~--~~~------------------- 631 (732)
.+ ......+. ..|+ ..+ +.+
T Consensus 227 ~~~~l~~~e~~~~~~~~~~~~~~~~y~~~~~t~p~tl~~~l~dsP~gl~awi~ek~~~w~d~~~~~d~ll~~v~~y~~t~ 306 (408)
T 3g02_A 227 SIESLSAAEKEGIARMEKFMTDGYAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTE 306 (408)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHHSCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHHHHHhCcchhhhhcCcHHHHHHHHhcChHHHHhhhhhhhhhccCCCCCHHHHHHHHHHHHhhc
Confidence 00 00000000 0000 000 000
Q ss_pred -----hhhhhhcCcc----------ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc
Q 004735 632 -----EKDYYEKSPI----------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 696 (732)
Q Consensus 632 -----~~~~~~~sp~----------~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 696 (732)
...|.+.... ..+.++++|+++++|.+|...++.. +.+.. ...+.+.+++++|| |..-
T Consensus 307 ~~~~s~~~y~e~~~~~~~~~~~~~~~~l~~i~vPt~v~~~~~D~~~~p~~---~~~~~---~~~~~~~~~~~gGH-f~~l 379 (408)
T 3g02_A 307 SFPRAIHTYREWVPTASAPNGATPYQKELYIHKPFGFSFFPKDLVPVPRS---WIATT---GNLVFFRDHAEGGH-FAAL 379 (408)
T ss_dssp HHHHHGGGHHHHTTC-------CTTTTTTCEEEEEEEEECTBSSSCCCHH---HHGGG---EEEEEEEECSSCBS-CHHH
T ss_pred cchhHHHHHHhhcccccccccccccccCCCcCCCEEEEeCCcccccCcHH---HHHhc---CCeeEEEECCCCcC-chhh
Confidence 0011111000 0245678999999999997666542 22222 12367889999999 4455
Q ss_pred ccHHHHHHHHHHHHHHHhC
Q 004735 697 ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 697 ~~~~~~~~~~~~fl~~~l~ 715 (732)
|..+.+.+.+.+||.+.-.
T Consensus 380 E~Pe~~~~~l~~fl~~~~~ 398 (408)
T 3g02_A 380 ERPRELKTDLTAFVEQVWQ 398 (408)
T ss_dssp HCHHHHHHHHHHHHHHHC-
T ss_pred hCHHHHHHHHHHHHHHHHH
Confidence 7888999999999987654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-10 Score=117.01 Aligned_cols=255 Identities=9% Similarity=-0.019 Sum_probs=152.4
Q ss_pred HhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-CEEEEEe
Q 004735 84 VSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSN 161 (732)
Q Consensus 84 i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-~~i~f~~ 161 (732)
+......++++.|+| |+.+||++... + .|++++..++ .+.+.... .....++++. +.+++..
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~---~--~i~~~~~~~~--~~~~~~~~---------~~~~~l~~~~dg~l~v~~ 86 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQ---N--RTWAWSDDGQ--LSPEMHPS---------HHQNGHCLNKQGHLIACS 86 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGG---T--EEEEEETTSC--EEEEESSC---------SSEEEEEECTTCCEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCC---C--EEEEEECCCC--eEEEECCC---------CCcceeeECCCCcEEEEe
Confidence 333445678999999 88899998743 3 4677766632 22221111 0122344443 3566666
Q ss_pred CCCCeEEEEeCCCCCCCceecCCCCCC-CCeEeeceeecCCCCEEEEEEec-cC--------CCCCCceeEEEEEEcCCC
Q 004735 162 YKDQRLYKHSIDSKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVRED-RR--------QDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~~~-~~~~~~~~~~spdG~~l~~~~~~-~~--------~~~~~~~~~l~~~d~~~~ 231 (732)
...+.|+++|.++ ++.+.+...... ......++.++|||+. +++... .. .........||+++.+ +
T Consensus 87 ~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (296)
T 3e5z_A 87 HGLRRLERQREPG--GEWESIADSFEGKKLNSPNDVCLAPDGSL-WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G 162 (296)
T ss_dssp TTTTEEEEECSTT--CCEEEEECEETTEECCCCCCEEECTTSCE-EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred cCCCeEEEEcCCC--CcEEEEeeccCCCCCCCCCCEEECCCCCE-EEECCccccccccccccccccCCCcEEEEECCC-C
Confidence 5667899999976 666655432110 0123467889999984 343210 00 0000012589999987 6
Q ss_pred CccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce-eeeEEecCCCCCccccCcCceeCC
Q 004735 232 NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 232 ~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~-~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
+ .+.+........+.+|||||+.| +.... ...|++++++.+|++ .....+.... ..+..+.+++
T Consensus 163 ~---~~~~~~~~~~~~gi~~s~dg~~l-v~~~~-------~~~i~~~~~~~~g~~~~~~~~~~~~~----~~p~~i~~d~ 227 (296)
T 3e5z_A 163 T---LSAPIRDRVKPNGLAFLPSGNLL-VSDTG-------DNATHRYCLNARGETEYQGVHFTVEP----GKTDGLRVDA 227 (296)
T ss_dssp C---EEEEECCCSSEEEEEECTTSCEE-EEETT-------TTEEEEEEECSSSCEEEEEEEECCSS----SCCCSEEEBT
T ss_pred C---EEEeecCCCCCccEEECCCCCEE-EEeCC-------CCeEEEEEECCCCcCcCCCeEeeCCC----CCCCeEEECC
Confidence 6 66666555566778999999988 66522 346999998745766 4444442222 4567889999
Q ss_pred CCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC
Q 004735 311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 390 (732)
Q Consensus 311 Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~ 390 (732)
||+|++.. . ..|+++++++...+.+..... .. .+.|.. ++++.|++++. ..||++++++
T Consensus 228 ~G~l~v~~-~----~~v~~~~~~g~~~~~~~~~~~-~~---------~~~f~~--~d~~~L~v~t~----~~l~~~~~~~ 286 (296)
T 3e5z_A 228 GGLIWASA-G----DGVHVLTPDGDELGRVLTPQT-TS---------NLCFGG--PEGRTLYMTVS----TEFWSIETNV 286 (296)
T ss_dssp TSCEEEEE-T----TEEEEECTTSCEEEEEECSSC-CC---------EEEEES--TTSCEEEEEET----TEEEEEECSC
T ss_pred CCCEEEEc-C----CeEEEECCCCCEEEEEECCCC-ce---------eEEEEC--CCCCEEEEEcC----CeEEEEEccc
Confidence 99866655 3 358899998655555542221 11 223311 05566776653 2699999988
Q ss_pred CceE
Q 004735 391 HSLS 394 (732)
Q Consensus 391 ~~~~ 394 (732)
+.++
T Consensus 287 ~~~~ 290 (296)
T 3e5z_A 287 RGLE 290 (296)
T ss_dssp CBCC
T ss_pred cccc
Confidence 7664
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.27 E-value=4.1e-10 Score=115.32 Aligned_cols=243 Identities=8% Similarity=0.037 Sum_probs=142.9
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l 167 (732)
..++|.|+| ++.+||++... + .|+++++.++ ..+.+ ..+ .....++++.+ .+++.. ...|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~---~--~i~~~d~~~~-~~~~~-~~~---------~~~~~i~~~~dG~l~v~~--~~~l 75 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPA---K--KVCRWDSFTK-QVQRV-TMD---------APVSSVALRQSGGYVATI--GTKF 75 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTT---T--EEEEEETTTC-CEEEE-ECS---------SCEEEEEEBTTSSEEEEE--TTEE
T ss_pred cccCCeEECCCCEEEEEECCC---C--EEEEEECCCC-cEEEE-eCC---------CceEEEEECCCCCEEEEE--CCeE
Confidence 458999999 89999999743 3 4777777643 22211 111 11233444433 455543 4579
Q ss_pred EEEeCCCCCCCceecCCCC-CCCCeEeeceeecCCCCEEEEEEeccCC--CCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 168 YKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQ--DALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~--~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
+++|+++ ++.+.+.... ..+..+.++..++|||+.++........ ........||+++.+ ++ ...+..+..
T Consensus 76 ~~~d~~~--g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~---~~~~~~~~~ 149 (297)
T 3g4e_A 76 CALNWKE--QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HH---VKKYFDQVD 149 (297)
T ss_dssp EEEETTT--TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC---EEEEEEEES
T ss_pred EEEECCC--CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CC---EEEEeeccc
Confidence 9999987 6666554321 1224567889999999954433332111 000113689999986 44 445544444
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec-CCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCC
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 323 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g 323 (732)
..++.+|||||+.|++.... ...|++++++ .+|++...+.+.... .....+..+.+++||+|++.... .
T Consensus 150 ~pngi~~spdg~~lyv~~~~-------~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~-~- 219 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSL-------SYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYN-G- 219 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGG-------GTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEET-T-
T ss_pred cccceEEcCCCCEEEEecCC-------CCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcC-C-
Confidence 55678999999999877632 3459999984 367765444433221 00034567889999986655433 2
Q ss_pred eeeEEEEeccCCeEEEecccc-cccCCCceeecccceeee-eecCCCCEEEEEEEECC
Q 004735 324 FWNLHKWIESNNEVLAIYSLD-AEFSRPLWVFGINSYEII-QSHGEKNLIACSYRQNG 379 (732)
Q Consensus 324 ~~~l~~~d~~~g~~~~l~~~~-~~~~~~~w~~~~~~~~~~-~~~~~~~~l~~~s~~~g 379 (732)
..|+++|+++|+........ ... ..+.|. + +++.||+++.+.+
T Consensus 220 -~~v~~~d~~tG~~~~~i~~p~~~~---------t~~~f~g~---d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 220 -GRVIRLDPVTGKRLQTVKLPVDKT---------TSCCFGGK---NYSEMYVTCARDG 264 (297)
T ss_dssp -TEEEEECTTTCCEEEEEECSSSBE---------EEEEEESG---GGCEEEEEEBCTT
T ss_pred -CEEEEEcCCCceEEEEEECCCCCc---------eEEEEeCC---CCCEEEEEcCCcC
Confidence 35999999877654333221 111 123342 2 5677887776543
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.6e-11 Score=116.81 Aligned_cols=209 Identities=11% Similarity=0.041 Sum_probs=128.0
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCC--EEEEEcCCCCCCC---Chh--h-HHh----hccC--CCc--ccHHHH
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTGY---GRE--F-RER----LLGR--WGI--VDVNDC 558 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~--~v~~~d~rG~~g~---g~~--~-~~~----~~~~--~~~--~~~~D~ 558 (732)
.+.||++||. ......|..+++.|.+.|+ .|+.+|.++.+.. |.- . ... ...+ -+. ...+++
T Consensus 6 ~~pvvliHG~--~~~~~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l 83 (249)
T 3fle_A 6 TTATLFLHGY--GGSERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWI 83 (249)
T ss_dssp CEEEEEECCT--TCCGGGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHH
T ss_pred CCcEEEECCC--CCChhHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHH
Confidence 4678899997 4445677789999999986 5888887643310 100 0 000 0000 000 125677
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CC-----CcceEEEeecCcCCHHHHHhhcchhhhhhhhh--hcC
Q 004735 559 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR-----DTFKAGASLYGVADLSMLRAETHKFESRYIDN--LVG 630 (732)
Q Consensus 559 ~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p-----~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~--~~~ 630 (732)
.++++.+.++.. .+++.++||||||.+++.++. +| .+++..|.+++..+........... ..+... ...
T Consensus 84 ~~~i~~l~~~~~--~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~-~~~~~~g~p~~ 160 (249)
T 3fle_A 84 KEVLSQLKSQFG--IQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNE-IIVDKQGKPSR 160 (249)
T ss_dssp HHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTT-SCBCTTCCBSS
T ss_pred HHHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcch-hhhcccCCCcc
Confidence 888888887754 458999999999999999987 65 3799999988765432111100000 000000 000
Q ss_pred ChhhhhhcCc-cccCCCCCCCEEEEEeC------CCCccChHHHHHHHHHHHhCCCCEEEEEeCC--CCccCCCcccHHH
Q 004735 631 SEKDYYEKSP-INFVDKFSCPIILFQGL------EDKVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKAENIKF 701 (732)
Q Consensus 631 ~~~~~~~~sp-~~~~~~i~~P~Lii~G~------~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~~~~~~ 701 (732)
....|...-. ...+.+..+|+|.|+|. .|.+||...++.+...++......+.+++.| +.|.... ++ .+
T Consensus 161 ~~~~~~~l~~~~~~~p~~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~y~e~~v~g~~a~Hs~l~-~n-~~ 238 (249)
T 3fle_A 161 MNAAYRQLLSLYKIYCGKEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKGAKAQHSQLH-EN-KD 238 (249)
T ss_dssp CCHHHHHTGGGHHHHTTTTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSEEEEEEEESGGGSTGGGG-GC-HH
T ss_pred cCHHHHHHHHHHhhCCccCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCceEEEEEeCCCCchhccc-cC-HH
Confidence 0112222111 12233456899999998 6999999999888888877666666677765 8897543 23 47
Q ss_pred HHHHHHHHH
Q 004735 702 TLEQQMVFF 710 (732)
Q Consensus 702 ~~~~~~~fl 710 (732)
+.+.+.+||
T Consensus 239 V~~~I~~FL 247 (249)
T 3fle_A 239 VANEIIQFL 247 (249)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777776
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=115.27 Aligned_cols=196 Identities=12% Similarity=0.077 Sum_probs=117.7
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCC---CEEEEEcCCCCCC--C-Ch---hhHHh----hccCC--C----cccHH
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRG---WAFVDVNYGGSTG--Y-GR---EFRER----LLGRW--G----IVDVN 556 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G---~~v~~~d~rG~~g--~-g~---~~~~~----~~~~~--~----~~~~~ 556 (732)
+.||++||. ......|..++..|++.| +.|+.+|.++.+. + |. ..... ...+. + ....+
T Consensus 5 ~pvv~iHG~--~~~~~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a~ 82 (250)
T 3lp5_A 5 APVIMVPGS--SASQNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAV 82 (250)
T ss_dssp CCEEEECCC--GGGHHHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHHH
T ss_pred CCEEEECCC--CCCHHHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHHH
Confidence 457789997 344566778889998876 6777776553321 0 10 00000 00000 0 01257
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-----CCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcC
Q 004735 557 DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-----RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 630 (732)
Q Consensus 557 D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-----p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 630 (732)
++.++++.+.++.. .+++.++||||||.+++.++. + +++++.+|.+++..+...... .........+
T Consensus 83 ~l~~~~~~l~~~~~--~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~~---~~~~~~~~~l-- 155 (250)
T 3lp5_A 83 WLNTAFKALVKTYH--FNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTST---TAKTSMFKEL-- 155 (250)
T ss_dssp HHHHHHHHHHTTSC--CSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCCS---SCCCHHHHHH--
T ss_pred HHHHHHHHHHHHcC--CCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCcccccc---cccCHHHHHH--
Confidence 78888888888754 468999999999999998877 5 678999999887654322100 0000000011
Q ss_pred ChhhhhhcCccccCCCCCCCEEEEEeC----CCCccChHHHHHHHHHHHhCCCCEEEEEeC--CCCccCCCcccHHHHHH
Q 004735 631 SEKDYYEKSPINFVDKFSCPIILFQGL----EDKVVPPDQARKIYKALKENGLPVALVEYE--GEQHGFRKAENIKFTLE 704 (732)
Q Consensus 631 ~~~~~~~~sp~~~~~~i~~P~Lii~G~----~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~--~~gH~~~~~~~~~~~~~ 704 (732)
... ...+.+ .+|+|+|+|+ .|.+||...++.+...++......+.+.+. +++|.... ++. ++.+
T Consensus 156 -----~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H~~l~-e~~-~v~~ 225 (250)
T 3lp5_A 156 -----YRY--RTGLPE-SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVKHFTEITVTGANTAHSDLP-QNK-QIVS 225 (250)
T ss_dssp -----HHT--GGGSCT-TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSSEEEEEECTTTTBSSCCHH-HHH-HHHH
T ss_pred -----Hhc--cccCCC-CceEEEEEecCCCCCCceeeHHHHHHHHHHhcccccceEEEEEeCCCCchhcch-hCH-HHHH
Confidence 000 111222 6899999999 999999999988877776543444444554 46686532 332 5555
Q ss_pred HHHHHH
Q 004735 705 QQMVFF 710 (732)
Q Consensus 705 ~~~~fl 710 (732)
.+.+||
T Consensus 226 ~I~~FL 231 (250)
T 3lp5_A 226 LIRQYL 231 (250)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555555
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-10 Score=117.25 Aligned_cols=159 Identities=11% Similarity=0.009 Sum_probs=98.1
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+.++++...++.|+++|+++ ++.. .+.... ......++|+|||+++++.... ...|+++|+++++
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~---~~~~~~~~~s~dg~~~~v~~~~--------~~~i~~~d~~t~~- 76 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNH--------YGDIYGIDLDTCK- 76 (349)
T ss_dssp CEEEEEEETTTEEEEEETTT--TEEEEEEECSS---CCSSCEEEECTTSSEEEEEETT--------TTEEEEEETTTTE-
T ss_pred CEEEEEeCCCCeEEEEECCC--CcEEEEEecCC---CCCCceeEECCCCCEEEEEeCC--------CCcEEEEeCCCCc-
Confidence 45666776788999999987 5443 333221 0123567899999986655432 2589999999877
Q ss_pred cccEE-cccCC------CceeccccCCCCCeEEEEeccC--CCCCC--CccEEEEEEecCCCceee-eEEecCCCCCccc
Q 004735 234 QEPKV-LVSGS------DFYAFPRMDPRGERMAWIEWHH--PNMPW--DKAELWVGYISENGDVYK-RVCVAGFDPTIVE 301 (732)
Q Consensus 234 ~~~~~-lt~~~------~~~~~p~~SPDG~~la~~~~~~--~~~~~--~~~~l~v~d~~~~g~~~~-~~~~~~~~~~~~~ 301 (732)
... +..+. .......|||||++|++...+. ....+ ....|+++|++ +|+... +..+... .
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~-----~ 148 (349)
T 1jmx_B 77 --NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGLEAKPVRTFPMP-----R 148 (349)
T ss_dssp --EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGGGBCCSEEEECC-----S
T ss_pred --EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC-CccccceeeeccCC-----C
Confidence 433 32221 1134678999999998776320 00000 13579999998 654322 2333332 3
Q ss_pred cCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
.+..+.|+|||+++ .... .|+++|+.+++.....
T Consensus 149 ~~~~~~~s~dg~l~-~~~~-----~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 149 QVYLMRAADDGSLY-VAGP-----DIYKMDVKTGKYTVAL 182 (349)
T ss_dssp SCCCEEECTTSCEE-EESS-----SEEEECTTTCCEEEEE
T ss_pred cccceeECCCCcEE-EccC-----cEEEEeCCCCceeccc
Confidence 45677799999944 4322 2899999888765443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-09 Score=107.57 Aligned_cols=269 Identities=8% Similarity=0.007 Sum_probs=155.6
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCC
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~ 165 (732)
...+..+.|+| ++.++... ++...+|..... +....+.. .....+.....+..++++ ..++....++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-----dg~i~iw~~~~~--~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 119 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-----KGCVKVWDISHP--GNKSPVSQ----LDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-----BSEEEEEETTST--TCCSCSEE----EECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred CCceEEEEEecCCcEEEEcC-----CCeEEEEECCCC--Cceeeeec----ccccCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 34567899999 66665542 367677766433 11111110 000001122334455533 3444555678
Q ss_pred eEEEEeCCCCCCCce---ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC
Q 004735 166 RLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~ 242 (732)
.|.++++.+ ++.. .+... ........|+|+|+.++....+ ..|+++|+.+++. ...+...
T Consensus 120 ~i~~~d~~~--~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d---------g~v~~~d~~~~~~--~~~~~~~ 182 (337)
T 1gxr_A 120 TLSIWDLAA--PTPRIKAELTSS----APACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQTL--VRQFQGH 182 (337)
T ss_dssp EEEEEECCC--C--EEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTEE--EEEECCC
T ss_pred cEEEEECCC--CCcceeeecccC----CCceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCce--eeeeecc
Confidence 899999987 5422 22222 2345667899999987665442 4788999988761 2334334
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~ 322 (732)
........|+|||+.|+... ....|+++|+. +++. ...+... ..+..+.|+|||++++.... .
T Consensus 183 ~~~i~~~~~~~~~~~l~~~~--------~dg~i~~~d~~-~~~~--~~~~~~~-----~~v~~~~~s~~~~~l~~~~~-~ 245 (337)
T 1gxr_A 183 TDGASCIDISNDGTKLWTGG--------LDNTVRSWDLR-EGRQ--LQQHDFT-----SQIFSLGYCPTGEWLAVGME-S 245 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEE--------TTSEEEEEETT-TTEE--EEEEECS-----SCEEEEEECTTSSEEEEEET-T
T ss_pred cCceEEEEECCCCCEEEEEe--------cCCcEEEEECC-CCce--EeeecCC-----CceEEEEECCCCCEEEEEcC-C
Confidence 45567789999999888765 23459999998 6654 3333322 45678899999994444443 3
Q ss_pred CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCc
Q 004735 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD 402 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~ 402 (732)
+ .|..++..+++...+......+....|++ +++.| ++...++.- .++++.+++..........
T Consensus 246 ~--~i~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~l-~~~~~dg~i--~~~~~~~~~~~~~~~~~~~ 308 (337)
T 1gxr_A 246 S--NVEVLHVNKPDKYQLHLHESCVLSLKFAY------------CGKWF-VSTGKDNLL--NAWRTPYGASIFQSKESSS 308 (337)
T ss_dssp S--CEEEEETTSSCEEEECCCSSCEEEEEECT------------TSSEE-EEEETTSEE--EEEETTTCCEEEEEECSSC
T ss_pred C--cEEEEECCCCCeEEEcCCccceeEEEECC------------CCCEE-EEecCCCcE--EEEECCCCeEEEEecCCCc
Confidence 4 47777888877665543333333333432 55544 455556654 4457777766544444555
Q ss_pred eEEe-eEeCCEEEEEEe
Q 004735 403 IDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 403 v~~~-~~~~~~~~~~~~ 418 (732)
+..+ ..+++.+++.++
T Consensus 309 v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 309 VLSCDISVDDKYIVTGS 325 (337)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEec
Confidence 6666 444555555554
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-09 Score=112.32 Aligned_cols=244 Identities=11% Similarity=-0.029 Sum_probs=141.7
Q ss_pred cCCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 145 YGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 145 ~g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
.++.+..++++..+++...++.|.++|+++ ++.. .+......+.......+|+|||++|+....+ ..|
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~--~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---------~~i 151 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDE--NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---------ICI 151 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECT--TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccC--CCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC---------CeE
Confidence 445667777775555666788899999987 4332 2211000012345678899999987655442 468
Q ss_pred EEEEcCCCCccccE-EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcccc
Q 004735 224 VAIALNGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (732)
Q Consensus 224 ~~~d~~~~~~~~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~ 302 (732)
.++|+.+++ .. .+......+....|+|||+.++.....+ ..|.++|+. +++. ...+...... ..
T Consensus 152 ~iwd~~~~~---~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D-------~~v~iwd~~-~~~~--~~~~~~~~~~--~~ 216 (344)
T 4gqb_B 152 KVWDLAQQV---VLSSYRAHAAQVTCVAASPHKDSVFLSCSED-------NRILLWDTR-CPKP--ASQIGCSAPG--YL 216 (344)
T ss_dssp EEEETTTTE---EEEEECCCSSCEEEEEECSSCTTEEEEEETT-------SCEEEEETT-SSSC--EEECC----C--CC
T ss_pred EEEECCCCc---EEEEEcCcCCceEEEEecCCCCCceeeeccc-------ccccccccc-ccce--eeeeecceee--cc
Confidence 888999887 43 3333445667789999998765443222 238889998 6654 2222211101 34
Q ss_pred CcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 303 ~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
+..+.|+|++. ++..... .+ .|.++|+.+++.. .+......+. .+.|.+ ++..++++...++.
T Consensus 217 ~~~~~~~p~~~~~l~sg~~-dg--~v~~wd~~~~~~~~~~~~h~~~v~---------~v~fsp---~g~~~lasgs~D~~ 281 (344)
T 4gqb_B 217 PTSLAWHPQQSEVFVFGDE-NG--TVSLVDTKSTSCVLSSAVHSQCVT---------GLVFSP---HSVPFLASLSEDCS 281 (344)
T ss_dssp EEEEEECSSCTTEEEEEET-TS--EEEEEESCC--CCEEEECCSSCEE---------EEEECS---SSSCCEEEEETTSC
T ss_pred ceeeeecCCCCcceEEecc-CC--cEEEEECCCCcEEEEEcCCCCCEE---------EEEEcc---CCCeEEEEEeCCCe
Confidence 56788999766 6665554 44 4666688776543 3322222222 234443 66666667667776
Q ss_pred EEEEEEECCCCceEEeccCCCceEEe-eE-eCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 381 SYLGILDDFGHSLSLLDIPFTDIDNI-TL-GNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 381 ~~ly~~~~~~~~~~~lt~~~~~v~~~-~~-~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
-+|| |..+++...+......|..+ .. +++.+++.++ .++ .|..+++.+.
T Consensus 282 i~vw--d~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s-~D~--~v~~w~v~~~ 332 (344)
T 4gqb_B 282 LAVL--DSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVG-WDH--QVVHHVVPTE 332 (344)
T ss_dssp EEEE--CTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEE-TTS--CEEEEECCC-
T ss_pred EEEE--ECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEc-CCC--eEEEEECCCC
Confidence 5555 88888877766666678777 33 4445554444 332 3555555443
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-11 Score=132.96 Aligned_cols=214 Identities=19% Similarity=0.170 Sum_probs=125.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-cccHHHHHH-HHCCCEEEEEcCCCC-CCCChhhHHhhccCCC
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYW-TSRGWAFVDVNYGGS-TGYGREFRERLLGRWG 551 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~~~~~~~~l-~~~G~~v~~~d~rG~-~g~g~~~~~~~~~~~~ 551 (732)
+...+|.|.... ...+.|+||++|||++..... .+....... ...|++|+.+|||.. -|++......... .+
T Consensus 86 l~l~v~~P~~~~----~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~~~-~~ 160 (522)
T 1ukc_A 86 LFINVFKPSTAT----SQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNG-DL 160 (522)
T ss_dssp CEEEEEEETTCC----TTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSS-CT
T ss_pred CEEEEEECCCCC----CCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhccccC-CC
Confidence 555677786521 245689999999997654332 222221111 246999999999942 2333221111111 12
Q ss_pred cccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEEEeecCcCCHHHHHhhcchhhhh
Q 004735 552 IVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F----RDTFKAGASLYGVADLSMLRAETHKFESR 623 (732)
Q Consensus 552 ~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~----p~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 623 (732)
...+.|+.++++|+.++ ...|++||.|+|+|+||+++..++. . ..+|+++|+.+|.................
T Consensus 161 n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~~ 240 (522)
T 1ukc_A 161 NAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFER 240 (522)
T ss_dssp THHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCHHHHHHHHHH
Confidence 23489999999999875 3568999999999999998877765 3 67899999999975421111111111112
Q ss_pred hhhhhcCC------hhhhhhcCc---------cccCCCCCCC--EEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe
Q 004735 624 YIDNLVGS------EKDYYEKSP---------INFVDKFSCP--IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 686 (732)
Q Consensus 624 ~~~~~~~~------~~~~~~~sp---------~~~~~~i~~P--~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (732)
+... ++. .+.+...++ .........| .+.++...|..+.+++..++.+.-+..++++-+-..
T Consensus 241 ~~~~-~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~~vp~l~G~~ 319 (522)
T 1ukc_A 241 FVND-TGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVPVLVGDD 319 (522)
T ss_dssp HHHH-TTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSCCCCEEEEEE
T ss_pred HHHH-cCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcCCCCCCCEEEEee
Confidence 2211 110 011111111 1111112233 455666777766677777777666556677777788
Q ss_pred CCCCccCC
Q 004735 687 EGEQHGFR 694 (732)
Q Consensus 687 ~~~gH~~~ 694 (732)
.++||.|.
T Consensus 320 ~~Eg~~f~ 327 (522)
T 1ukc_A 320 TDEGSNFA 327 (522)
T ss_dssp TBGGGGTS
T ss_pred cchhHHhh
Confidence 89999875
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.6e-11 Score=119.58 Aligned_cols=200 Identities=10% Similarity=-0.008 Sum_probs=109.5
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
...|.||++||++++. ..|..+.. | ..+|.|+++|++|.+. +. .. ...++++.+.+..+++... .
T Consensus 19 ~~~~~lv~lhg~~~~~--~~~~~~~~-l-~~~~~v~~~d~~G~~~-~~----~~-----~~~~~~~~~~~~~~i~~~~-~ 83 (265)
T 3ils_A 19 VARKTLFMLPDGGGSA--FSYASLPR-L-KSDTAVVGLNCPYARD-PE----NM-----NCTHGAMIESFCNEIRRRQ-P 83 (265)
T ss_dssp TSSEEEEEECCTTCCG--GGGTTSCC-C-SSSEEEEEEECTTTTC-GG----GC-----CCCHHHHHHHHHHHHHHHC-S
T ss_pred CCCCEEEEECCCCCCH--HHHHHHHh-c-CCCCEEEEEECCCCCC-CC----CC-----CCCHHHHHHHHHHHHHHhC-C
Confidence 3457899999985443 33444455 4 6789999999998421 11 11 1223443333322222211 2
Q ss_pred CCcEEEEEcChHHHHHHHHHh----CCCcceEEEeecCcCCHH---------HHHhhcchhhh--------------hhh
Q 004735 573 EKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLS---------MLRAETHKFES--------------RYI 625 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~~d~~---------~~~~~~~~~~~--------------~~~ 625 (732)
.+++.++|||+||.+++.++. ++++++++++.++..... .+......+.. .+.
T Consensus 84 ~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (265)
T 3ils_A 84 RGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAMEQLPRAFYEHCNSIGLFATQPGASPDGSTEPPSYLI 163 (265)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCCCCCCHHHHHHHHHTTTTTTSSSSCSSSCSCCCTTHH
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcccccCHHHHHHHHHHHHhCCCccccccCCHHHHHHHH
Confidence 358999999999999998874 678899999887643210 00000000000 000
Q ss_pred hhhcCChhhhhhcCccccCCCCCCCEE-EEEeCC---CCccC--------------hHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 626 DNLVGSEKDYYEKSPINFVDKFSCPII-LFQGLE---DKVVP--------------PDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 626 ~~~~~~~~~~~~~sp~~~~~~i~~P~L-ii~G~~---D~~v~--------------~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
..+..+......+.+ ....++++|++ +++|++ |..++ ......+.+.+. +.++++++++
T Consensus 164 ~~~~~~~~~~~~~~~-~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~i~ 240 (265)
T 3ils_A 164 PHFTAVVDVMLDYKL-APLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIMP--GASFDIVRAD 240 (265)
T ss_dssp HHHHHHHHHTTTCCC-CCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHST--TCCEEEEEEE
T ss_pred HHHHHHHHHHHhcCC-CCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhCC--ccceeEEEcC
Confidence 000000000111111 12346889977 999999 98773 222233322221 1378999999
Q ss_pred CCCccCC-CcccHHHHHHHHHHHH
Q 004735 688 GEQHGFR-KAENIKFTLEQQMVFF 710 (732)
Q Consensus 688 ~~gH~~~-~~~~~~~~~~~~~~fl 710 (732)
|+||.+. ..++.+++.+.+.+||
T Consensus 241 gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 241 GANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp EEETTGGGSTTTTHHHHHHHHHHT
T ss_pred CCCcceeeChhhHHHHHHHHHHHh
Confidence 9999653 1466666666666664
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-09 Score=107.84 Aligned_cols=268 Identities=10% Similarity=0.028 Sum_probs=154.8
Q ss_pred CCccCceEEcC-C---CcEEEEeecCCCCCceEEEEcCCCCCCCCccc-CCCCCcccccccccCCceeEEECC-EEEEEe
Q 004735 88 SKRLGGTAVDG-H---GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGGGAFRIFGD-TVIFSN 161 (732)
Q Consensus 88 ~~~~~~~~~~p-g---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l-~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~ 161 (732)
...+.+++|+| + +.+..+-. .++...+|..... +.... ... -+..+..+..++.+ .++++.
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs---~D~~v~vW~~~~~---~~~~~~~l~-------gh~~~v~~~~~~~~~~~l~s~ 98 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGS---LDDLVKVWKWRDE---RLDLQWSLE-------GHQLGVVSVDISHTLPIAASS 98 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEE---TTSCEEEEEEETT---EEEEEEEEC-------CCSSCEEEEEECSSSSEEEEE
T ss_pred CCcEEEEEEecCCCCCCCEEEEEc---CCCCEEEEECCCC---Ceeeeeeec-------cCCCCEEEEEECCCCCEEEEE
Confidence 34567888886 3 23444433 3477777776432 11110 000 12222334444433 566677
Q ss_pred CCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc
Q 004735 162 YKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt 240 (732)
..++.|.++|+.+ ++ .+.+... .......+|+|||++|+.... ...|.++++.+++. ...+.
T Consensus 99 s~D~~i~lWd~~~--~~~~~~~~~~----~~~~~~~~~spdg~~l~~g~~---------dg~v~i~~~~~~~~--~~~~~ 161 (321)
T 3ow8_A 99 SLDAHIRLWDLEN--GKQIKSIDAG----PVDAWTLAFSPDSQYLATGTH---------VGKVNIFGVESGKK--EYSLD 161 (321)
T ss_dssp ETTSEEEEEETTT--TEEEEEEECC----TTCCCCEEECTTSSEEEEECT---------TSEEEEEETTTCSE--EEEEE
T ss_pred eCCCcEEEEECCC--CCEEEEEeCC----CccEEEEEECCCCCEEEEEcC---------CCcEEEEEcCCCce--eEEec
Confidence 7788999999987 43 3334333 233456789999998665433 25788889988761 23333
Q ss_pred cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEec
Q 004735 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 241 ~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~ 320 (732)
.........+|||||+.|+..+. ...|.++|+. +++. +..+.+.. ..+..+.|+|||+++++...
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~--------dg~i~iwd~~-~~~~--~~~~~~h~----~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAI--------DGIINIFDIA-TGKL--LHTLEGHA----MPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEET--------TSCEEEEETT-TTEE--EEEECCCS----SCCCEEEECTTSCEEEEECT
T ss_pred CCCceEEEEEECCCCCEEEEEcC--------CCeEEEEECC-CCcE--EEEEcccC----CceeEEEEcCCCCEEEEEcC
Confidence 44455677899999999987662 2348999998 6755 45555554 56788999999995555544
Q ss_pred cCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEecc
Q 004735 321 KNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDI 398 (732)
Q Consensus 321 ~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~ 398 (732)
.+. |.++|..+++..... .....+.. +.|.+ ++.. +++...++.-.|| ++.+++. ..+..
T Consensus 227 -dg~--i~iwd~~~~~~~~~~~~h~~~v~~---------~~~sp---~~~~-l~s~s~D~~v~iw--d~~~~~~~~~~~~ 288 (321)
T 3ow8_A 227 -DGY--IKIYDVQHANLAGTLSGHASWVLN---------VAFCP---DDTH-FVSSSSDKSVKVW--DVGTRTCVHTFFD 288 (321)
T ss_dssp -TSC--EEEEETTTCCEEEEECCCSSCEEE---------EEECT---TSSE-EEEEETTSCEEEE--ETTTTEEEEEECC
T ss_pred -CCe--EEEEECCCcceeEEEcCCCCceEE---------EEECC---CCCE-EEEEeCCCcEEEE--eCCCCEEEEEEcC
Confidence 344 566677776544332 22222222 33432 5554 4555567766666 6666653 34444
Q ss_pred CCCceEEe-eEeCCEEEEEEe
Q 004735 399 PFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 399 ~~~~v~~~-~~~~~~~~~~~~ 418 (732)
....|..+ ..+++..++.++
T Consensus 289 h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 289 HQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEe
Confidence 55567776 344455555444
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-08 Score=106.90 Aligned_cols=292 Identities=10% Similarity=0.045 Sum_probs=167.1
Q ss_pred ccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCC
Q 004735 86 GASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYK 163 (732)
Q Consensus 86 ~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~ 163 (732)
.....+.+++|+| ++.++... .++...+|..... +....+.. +...+.+..++++ ..+++...
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~---~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~ 94 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCS----KDSSASVWYSLNG---ERLGTLDG--------HTGTIWSIDVDCFTKYCVTGSA 94 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEE----SSSCEEEEETTTC---CEEEEECC--------CSSCEEEEEECTTSSEEEEEET
T ss_pred EeeceEEEEEEcCCCCEEEEEe----CCCEEEEEeCCCc---hhhhhhhh--------cCCcEEEEEEcCCCCEEEEEeC
Confidence 3445678899999 66555432 2466666655332 22222211 1222334455533 44555557
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc---------
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ--------- 234 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--------- 234 (732)
++.|.++|+.+ ++....... ........|+|+|+.++....+.... ...|.++++..+...
T Consensus 95 dg~i~iwd~~~--~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 95 DYSIKLWDVSN--GQCVATWKS----PVPVKRVEFSPCGNYFLAILDNVMKN----PGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp TTEEEEEETTT--CCEEEEEEC----SSCEEEEEECTTSSEEEEEECCBTTB----CCEEEEEEEEECTTTCCEEEECSS
T ss_pred CCeEEEEECCC--CcEEEEeec----CCCeEEEEEccCCCEEEEecCCccCC----CCEEEEEEecCCccceeecccccc
Confidence 88999999987 544333222 23456788999999987776542111 146777777654310
Q ss_pred ccEEcccCCC--ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC-CceeeeEEecCCCCCccccCcCceeCCC
Q 004735 235 EPKVLVSGSD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 235 ~~~~lt~~~~--~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~-g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
....+..... ......|+|||+.|+... ....|+++|+. + ++. ...+.... ..+..+.|+||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~-~~~~~--~~~~~~~~----~~v~~~~~~~~ 229 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGH--------KDGKISKYDVS-NNYEY--VDSIDLHE----KSISDMQFSPD 229 (369)
T ss_dssp CSEEEECCTTCCCEEEEEECGGGCEEEEEE--------TTSEEEEEETT-TTTEE--EEEEECCS----SCEEEEEECTT
T ss_pred eeeeccCCcCccceeEEEEcCCCCEEEEEc--------CCCEEEEEECC-CCcEe--EEEEecCC----CceeEEEECCC
Confidence 0111211111 556778999999887765 23459999998 4 443 44445444 56778999999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC-----------CE
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-----------GR 380 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~-----------g~ 380 (732)
|+++++... .+ .|..+|..+++...............|++ +++.++...... +.
T Consensus 230 ~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 230 LTYFITSSR-DT--NSFLVDVSTLQVLKKYETDCPLNTAVITP------------LKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp SSEEEEEET-TS--EEEEEETTTCCEEEEEECSSCEEEEEECS------------SSSEEEEEECCC-------------
T ss_pred CCEEEEecC-Cc--eEEEEECCCCceeeeecCCCCceeEEecC------------CCceEEEeecCCCceEEEEecCCCc
Confidence 994444443 34 47777888876655443333333334443 555555444322 22
Q ss_pred EEEEEEECCCCceE-EeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 381 SYLGILDDFGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 381 ~~ly~~~~~~~~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
..+.+++..+++.. .+......+..+ ..+++.+++.++.. ..|.+++++.+.
T Consensus 295 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~v~iw~~~~~~ 348 (369)
T 3zwl_B 295 FEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED---GFIRLHHFEKSY 348 (369)
T ss_dssp CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT---SEEEEEEECHHH
T ss_pred ceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC---CeEEEEECcccc
Confidence 36777788777644 444456667777 44555666655543 357777766543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-09 Score=110.57 Aligned_cols=218 Identities=12% Similarity=0.114 Sum_probs=129.0
Q ss_pred HHHHhccC-CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE-CCEE
Q 004735 81 ADVVSGAS-KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GDTV 157 (732)
Q Consensus 81 ~~~i~~~~-~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~-~~~i 157 (732)
++.+.... ...++|.|+| ++.+||++... + .|++++..++ +.+.+.. + ....++.++ ++.+
T Consensus 40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~---~--~i~~~d~~~~-~~~~~~~-~---------~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 40 GRVLDETPMLLGEGPTFDPASGTAWWFNILE---R--ELHELHLASG-RKTVHAL-P---------FMGSALAKISDSKQ 103 (326)
T ss_dssp CEEEECSCCSBEEEEEEETTTTEEEEEEGGG---T--EEEEEETTTT-EEEEEEC-S---------SCEEEEEEEETTEE
T ss_pred eEEeeccCCCCCcCCeEeCCCCEEEEEECCC---C--EEEEEECCCC-cEEEEEC-C---------CcceEEEEeCCCeE
Confidence 34444432 3458999999 89999998743 3 4777776633 2222211 1 012233343 3455
Q ss_pred EEEeCCCCeEEEEeCCCCCCCceecCCCC-CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
++.. ...|+++|+++ ++.+.+.... .....+..++.++|||+.++........ .....||+++ +++ .
T Consensus 104 ~v~~--~~gl~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~---~~~~~l~~~~--~g~---~ 171 (326)
T 2ghs_A 104 LIAS--DDGLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAE---TGAGSIYHVA--KGK---V 171 (326)
T ss_dssp EEEE--TTEEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCC---TTCEEEEEEE--TTE---E
T ss_pred EEEE--CCCEEEEECCC--CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCC---CCceEEEEEe--CCc---E
Confidence 5554 34599999987 7766664321 1123567888999999954333221111 1147899999 466 5
Q ss_pred EEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec-CCC-ceeeeEEe---cCCCCCccccCcCceeCCC
Q 004735 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENG-DVYKRVCV---AGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 237 ~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~-~~g-~~~~~~~~---~~~~~~~~~~~~~~~wspD 311 (732)
+.+..+......++|||||++|++.... ...|++++++ .+| ++...+.+ .... ..+..+.+++|
T Consensus 172 ~~~~~~~~~~~~i~~s~dg~~lyv~~~~-------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~----~~p~gi~~d~~ 240 (326)
T 2ghs_A 172 TKLFADISIPNSICFSPDGTTGYFVDTK-------VNRLMRVPLDARTGLPTGKAEVFIDSTGIK----GGMDGSVCDAE 240 (326)
T ss_dssp EEEEEEESSEEEEEECTTSCEEEEEETT-------TCEEEEEEBCTTTCCBSSCCEEEEECTTSS----SEEEEEEECTT
T ss_pred EEeeCCCcccCCeEEcCCCCEEEEEECC-------CCEEEEEEcccccCCcccCceEEEECCCCC----CCCCeeEECCC
Confidence 5555433445678999999999887522 3469999985 246 44322222 2122 34567889999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEe
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l 340 (732)
|++++.... ...|+++++++...+.+
T Consensus 241 G~lwva~~~---~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 241 GHIWNARWG---EGAVDRYDTDGNHIARY 266 (326)
T ss_dssp SCEEEEEET---TTEEEEECTTCCEEEEE
T ss_pred CCEEEEEeC---CCEEEEECCCCCEEEEE
Confidence 986654432 23689999855444444
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-11 Score=116.94 Aligned_cols=197 Identities=13% Similarity=0.146 Sum_probs=107.8
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
...|.||++||.++ ....|..++..|. .+|.|+++|+||.+..... ..+|+.+.++.+.+...+.
T Consensus 11 ~~~~~lv~lhg~g~--~~~~~~~~~~~L~-~~~~vi~~Dl~GhG~S~~~------------~~~~~~~~~~~~~~~l~~~ 75 (242)
T 2k2q_B 11 SEKTQLICFPFAGG--YSASFRPLHAFLQ-GECEMLAAEPPGHGTNQTS------------AIEDLEELTDLYKQELNLR 75 (242)
T ss_dssp TCCCEEESSCCCCH--HHHHHHHHHHHHC-CSCCCEEEECCSSCCSCCC------------TTTHHHHHHHHTTTTCCCC
T ss_pred CCCceEEEECCCCC--CHHHHHHHHHhCC-CCeEEEEEeCCCCCCCCCC------------CcCCHHHHHHHHHHHHHhh
Confidence 34567899999743 3345666777664 4799999999976543211 1356777777666543222
Q ss_pred -CCcEEEEEcChHHHHHHHHHh-------CCCcceEEEeecCcCCH--------HHHHhhcchh---hhhh-----hhhh
Q 004735 573 -EKRLCITGGSAGGYTTLAALA-------FRDTFKAGASLYGVADL--------SMLRAETHKF---ESRY-----IDNL 628 (732)
Q Consensus 573 -~~ri~i~G~S~GG~~a~~~~~-------~p~~~~a~v~~~~~~d~--------~~~~~~~~~~---~~~~-----~~~~ 628 (732)
.+++.++||||||.+++.++. +|+++-......+.... ..+....... .... ....
T Consensus 76 ~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (242)
T 2k2q_B 76 PDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKEVMSF 155 (242)
T ss_dssp CCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSEEEEEEECSCCCSCCCSSCTTHHHHHTTCCTTCCCCTTTHHHHTTTT
T ss_pred cCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEEEEECCCCCCCCcccccCCCHHHHHHHHHHhCCCChHHhcCHHHHHH
Confidence 268999999999999998875 46654211111111100 0000000000 0000 0000
Q ss_pred c-CC-hhhhh---hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHH
Q 004735 629 V-GS-EKDYY---EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTL 703 (732)
Q Consensus 629 ~-~~-~~~~~---~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~ 703 (732)
. .. ...+. .... ..+.++++|+|+++|++|..++ .... .+.+.-...+++++++ ||.+ ..+..+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~G~~D~~~~-~~~~----~~~~~~~~~~~~~~~~-gH~~-~~e~p~~~~ 227 (242)
T 2k2q_B 156 FLPSFRSDYRALEQFEL-YDLAQIQSPVHVFNGLDDKKCI-RDAE----GWKKWAKDITFHQFDG-GHMF-LLSQTEEVA 227 (242)
T ss_dssp CCSCHHHHHHHHTCCCC-SCCTTCCCSEEEEEECSSCCHH-HHHH----HHHTTCCCSEEEEEEC-CCSH-HHHHCHHHH
T ss_pred HHHHHHHHHHHHHhccc-CCCCccCCCEEEEeeCCCCcCH-HHHH----HHHHHhcCCeEEEEeC-Ccee-EcCCHHHHH
Confidence 0 00 00111 1111 1256789999999999998753 2222 2333322345788875 8954 334556777
Q ss_pred HHHHHHHHH
Q 004735 704 EQQMVFFAR 712 (732)
Q Consensus 704 ~~~~~fl~~ 712 (732)
+.+.+|+++
T Consensus 228 ~~i~~fl~~ 236 (242)
T 2k2q_B 228 ERIFAILNQ 236 (242)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 778888764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-08 Score=105.32 Aligned_cols=243 Identities=9% Similarity=-0.004 Sum_probs=146.9
Q ss_pred CceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCC-CCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 147 ~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~-~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+.+..++++ .+++... ++.|.++++.++ .....+... ............|+|||+.|+....+ ..|.
T Consensus 54 v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~ 122 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHP-GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA---------STLS 122 (337)
T ss_dssp CCEEEECSSSSEEEEEC-BSEEEEEETTST-TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---------SEEE
T ss_pred eEEEEEecCCcEEEEcC-CCeEEEEECCCC-CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC---------CcEE
Confidence 444555543 3444444 788999999762 222222110 00013455678899999987766542 5788
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
++|+.+++......+...........|+|||+.|+.... ...|+++|+. +++. ...+.... ..+.
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------dg~v~~~d~~-~~~~--~~~~~~~~----~~i~ 187 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS--------DGNIAVWDLH-NQTL--VRQFQGHT----DGAS 187 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET--------TSCEEEEETT-TTEE--EEEECCCS----SCEE
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC--------CCcEEEEeCC-CCce--eeeeeccc----CceE
Confidence 999987651112233334445667899999998877652 2348999998 6654 44455443 5677
Q ss_pred CceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 305 ~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
.+.|+|||++++.... .+ .|..+|+.+++.............. .|.+ +++.++.. ..++. |+
T Consensus 188 ~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~v~~~---------~~s~---~~~~l~~~-~~~~~--i~ 249 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGL-DN--TVRSWDLREGRQLQQHDFTSQIFSL---------GYCP---TGEWLAVG-MESSN--VE 249 (337)
T ss_dssp EEEECTTSSEEEEEET-TS--EEEEEETTTTEEEEEEECSSCEEEE---------EECT---TSSEEEEE-ETTSC--EE
T ss_pred EEEECCCCCEEEEEec-CC--cEEEEECCCCceEeeecCCCceEEE---------EECC---CCCEEEEE-cCCCc--EE
Confidence 8899999994444444 34 4777788887655444332222223 3332 56655544 44554 55
Q ss_pred EEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 385 ILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 385 ~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
++++.+++...+......+..+ ..+++.+++.++.. ..+.++|+.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~~~~~~~~ 299 (337)
T 1gxr_A 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD---NLLNAWRTPYGAS 299 (337)
T ss_dssp EEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCE
T ss_pred EEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC---CcEEEEECCCCeE
Confidence 6688888877777666677777 44555565555542 4688888887764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-09 Score=110.02 Aligned_cols=256 Identities=11% Similarity=0.012 Sum_probs=147.9
Q ss_pred CHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-CEE
Q 004735 80 TADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTV 157 (732)
Q Consensus 80 ~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-~~i 157 (732)
.++++.......++|.|+| |+.++|++... ++ +++++.. | +.+.+.... .......++. +++
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~---~~--i~~~~~~-g-~~~~~~~~~---------~~~~gl~~d~dG~l 99 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVG---RR--VLGWRED-G-TVDVLLDAT---------AFTNGNAVDAQQRL 99 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTT---TE--EEEEETT-S-CEEEEEESC---------SCEEEEEECTTSCE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCC---CE--EEEEeCC-C-CEEEEeCCC---------CccceeeECCCCCE
Confidence 3445555556678999999 88899998643 43 5666553 2 332221111 0112234443 356
Q ss_pred EEEeCCCCeEEEEeCCCCCCCceecCCCCCC-CCeEeeceeecCCCCEEEEEEecc----------CCCCCCceeEEEEE
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVREDR----------RQDALNSTTEIVAI 226 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~-~~~~~~~~~~spdG~~l~~~~~~~----------~~~~~~~~~~l~~~ 226 (732)
++.....+.|++++.+ +..+.+...... ......++.++|||+. +++ +.. ..........||++
T Consensus 100 ~v~~~~~~~v~~~~~~---g~~~~~~~~~~~~~~~~~~~i~~d~dG~l-~~t-d~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 100 VHCEHGRRAITRSDAD---GQAHLLVGRYAGKRLNSPNDLIVARDGAI-WFT-DPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp EEEETTTTEEEEECTT---SCEEEEECEETTEECSCCCCEEECTTSCE-EEE-CCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred EEEECCCCEEEEECCC---CCEEEEEeccCCCccCCCCCEEECCCCCE-EEe-CcCCCccccccccccccccCCCeEEEE
Confidence 6666566789999986 455555432110 0122467889999984 443 110 00011113689999
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
+.++++ .+.+. +.....+.+|||||+.|++...... +.....|++++++ ++.+.....+.... . ..+..+
T Consensus 175 d~~~g~---~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~--~~~~~~i~~~~~~-~~~l~~~~~~~~~~-~--~~pdgi 244 (305)
T 3dr2_A 175 PPDGSP---LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQ--GHGSVEITAFAWR-DGALHDRRHFASVP-D--GLPDGF 244 (305)
T ss_dssp CSSSCC---CEEEE-EESSEEEEEECTTSSEEEEEECCC-----CCCEEEEEEEE-TTEEEEEEEEECCS-S--SCCCSE
T ss_pred cCCCCc---EEEEe-cCCCCcceEEcCCCCEEEEEecCCc--CCCCCEEEEEEec-CCCccCCeEEEECC-C--CCCCeE
Confidence 998888 66666 4445567899999999987763321 0113579999998 44354444443221 1 456788
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
.+++||+|++.. . . .|+++++++.....+.... .. ..+.|.+ +++.|++++. ..||++
T Consensus 245 ~~d~~G~lwv~~-~-~---gv~~~~~~g~~~~~~~~~~-~~---------~~~~f~~---d~~~L~it~~----~~l~~~ 302 (305)
T 3dr2_A 245 CVDRGGWLWSSS-G-T---GVCVFDSDGQLLGHIPTPG-TA---------SNCTFDQ---AQQRLFITGG----PCLWML 302 (305)
T ss_dssp EECTTSCEEECC-S-S---EEEEECTTSCEEEEEECSS-CC---------CEEEECT---TSCEEEEEET----TEEEEE
T ss_pred EECCCCCEEEec-C-C---cEEEECCCCCEEEEEECCC-ce---------eEEEEeC---CCCEEEEEcC----CeEEEE
Confidence 999999855443 3 2 3999999766555554221 11 2233332 6677777664 257776
Q ss_pred EC
Q 004735 387 DD 388 (732)
Q Consensus 387 ~~ 388 (732)
++
T Consensus 303 ~~ 304 (305)
T 3dr2_A 303 PL 304 (305)
T ss_dssp EC
T ss_pred EC
Confidence 54
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.2e-09 Score=111.76 Aligned_cols=291 Identities=11% Similarity=-0.026 Sum_probs=154.1
Q ss_pred CccCceEEcC-CCcEEEEeecCCC---CCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTE---AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~ 164 (732)
..+.+++|+| |+.++- ...+.. ++. ++.++..+|.....+.. ...-+..++.+.+++++.-+++...+
T Consensus 43 ~~V~~v~fSpDG~~las-~s~d~~~~wd~~--v~~~~~~~~~~~~~~~~-----~~~~~~~~V~~~~~s~d~~~l~~s~d 114 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLA-ASSLSSRTWGGS--IWVFKDPEGAPNESLCT-----AGVQTEAGVTDVAWVSEKGILVASDS 114 (357)
T ss_dssp SEEEEEEECSSSCEEEE-EECSSSSSCCEE--EEEESSCC---CGGGCS-----EEEECSSCEEEEEEETTTEEEEEETT
T ss_pred CCEEEEEECCCCCEEEE-EcCCCCccccCe--EEEEECCCCCcceeEec-----ccCCCCCCEEEEEEcCCCCEEEEECC
Confidence 4578999999 665544 332210 233 34444333222222211 11113334556666665333444567
Q ss_pred CeEEEEeCCCCCCCceecCCC-CCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE-cccC
Q 004735 165 QRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVSG 242 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~-~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-lt~~ 242 (732)
+.|.++|+.+ ++...+... ...........+|+|||++|+....+ ..|.++|+.+++ ... +...
T Consensus 115 g~v~lWd~~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d---------g~v~iwd~~~~~---~~~~~~~h 180 (357)
T 4g56_B 115 GAVELWEILE--KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD---------FSVKVWDLSQKA---VLKSYNAH 180 (357)
T ss_dssp SCEEEC----------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTTE---EEEEECCC
T ss_pred CEEEEeeccc--cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC---------CeEEEEECCCCc---EEEEEcCC
Confidence 7899999876 432221110 00012345677899999987655442 468888998876 433 3334
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 321 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~ 321 (732)
...+...+|+||++.++.....+ ..|.++|+. +++........... ..+..+.|+||+. ++.....
T Consensus 181 ~~~v~~v~~s~~~~~~~~s~~~d-------g~v~~wd~~-~~~~~~~~~~~~~~----~~v~~v~~sp~~~~~la~g~~- 247 (357)
T 4g56_B 181 SSEVNCVAACPGKDTIFLSCGED-------GRILLWDTR-KPKPATRIDFCASD----TIPTSVTWHPEKDDTFACGDE- 247 (357)
T ss_dssp SSCEEEEEECTTCSSCEEEEETT-------SCEEECCTT-SSSCBCBCCCTTCC----SCEEEEEECTTSTTEEEEEES-
T ss_pred CCCEEEEEEccCCCceeeeeccC-------CceEEEECC-CCceeeeeeecccc----ccccchhhhhcccceEEEeec-
Confidence 45566788999997654443222 338888987 66542222222222 4466789999976 6666554
Q ss_pred CCeeeEEEEeccCCeEEE-ecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC
Q 004735 322 NGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~ 400 (732)
.+ .|.++|+.+++... +......+. .+.|.+ +++.++.+...++.-+|| |.++++........
T Consensus 248 d~--~i~~wd~~~~~~~~~~~~~~~~v~---------~l~~sp---~~~~~lasgs~D~~i~iw--d~~~~~~~~~~~H~ 311 (357)
T 4g56_B 248 TG--NVSLVNIKNPDSAQTSAVHSQNIT---------GLAYSY---HSSPFLASISEDCTVAVL--DADFSEVFRDLSHR 311 (357)
T ss_dssp SS--CEEEEESSCGGGCEEECCCSSCEE---------EEEECS---SSSCCEEEEETTSCEEEE--CTTSCEEEEECCCS
T ss_pred cc--ceeEEECCCCcEeEEEeccceeEE---------EEEEcC---CCCCEEEEEeCCCEEEEE--ECCCCcEeEECCCC
Confidence 34 36667777765433 322222222 234433 666666666667765555 78888766655555
Q ss_pred CceEEe-eE-eCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 401 TDIDNI-TL-GNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 401 ~~v~~~-~~-~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
..|..+ .. .++.+++.++. + ..|.++++..
T Consensus 312 ~~V~~vafsP~d~~~l~s~s~-D--g~v~iW~~~~ 343 (357)
T 4g56_B 312 DFVTGVAWSPLDHSKFTTVGW-D--HKVLHHHLPS 343 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEET-T--SCEEEEECC-
T ss_pred CCEEEEEEeCCCCCEEEEEcC-C--CeEEEEECCC
Confidence 667777 33 35555555543 3 2466666544
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.6e-10 Score=114.80 Aligned_cols=213 Identities=11% Similarity=-0.038 Sum_probs=120.5
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCC
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG 551 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~ 551 (732)
..+...++.|.... ....+.||++||....... .|. .+.+.|.++||.|+++|++|.+... ..
T Consensus 14 ~~l~~~i~~p~~~~-----~~~~~~VvllHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~~g~g~~~---~~------- 77 (317)
T 1tca_A 14 SVLDAGLTCQGASP-----SSVSKPILLVPGTGTTGPQ-SFDSNWIPLSTQLGYTPCWISPPPFMLND---TQ------- 77 (317)
T ss_dssp HHHHHTEEETTBCT-----TSCSSEEEEECCTTCCHHH-HHTTTHHHHHHTTTCEEEEECCTTTTCSC---HH-------
T ss_pred HHHhheeeCCCCCC-----CCCCCeEEEECCCCCCcch-hhHHHHHHHHHhCCCEEEEECCCCCCCCc---HH-------
Confidence 33444556665421 2334679999998544321 144 5778888899999999999753211 11
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEeecCcCCHHHHHhhcchh---hhhh
Q 004735 552 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVADLSMLRAETHKF---ESRY 624 (732)
Q Consensus 552 ~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p---~~~~a~v~~~~~~d~~~~~~~~~~~---~~~~ 624 (732)
...+++.+.++.+.++.. .+++.|+|||+||.++..++. ++ ++++++|++++.............+ ....
T Consensus 78 -~~~~~l~~~i~~~~~~~g--~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~~~~~~~~~~~~ 154 (317)
T 1tca_A 78 -VNTEYMVNAITALYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDALAVSAPSV 154 (317)
T ss_dssp -HHHHHHHHHHHHHHHHTT--SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHHTTCBCHHH
T ss_pred -HHHHHHHHHHHHHHHHhC--CCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhhhhhhhhcCchH
Confidence 124677888888877632 478999999999999998877 65 7899999999865422111000000 0000
Q ss_pred hhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHH--HHHHHHHHHhCCCCEEEEEe-------CCCCccCCC
Q 004735 625 IDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQ--ARKIYKALKENGLPVALVEY-------EGEQHGFRK 695 (732)
Q Consensus 625 ~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~--~~~~~~~l~~~g~~~~~~~~-------~~~gH~~~~ 695 (732)
.. ............. .......+|+++++|+.|.+|++.. .......+. +. +.+.+ ++.+|.. .
T Consensus 155 ~~-~~~~s~f~~~L~~-~~~~~~~vp~~~i~g~~D~iV~p~~~~g~~~~~~l~--~a--~~~~~~~~~~~~~~~gH~~-~ 227 (317)
T 1tca_A 155 WQ-QTTGSALTTALRN-AGGLTQIVPTTNLYSATDEIVQPQVSNSPLDSSYLF--NG--KNVQAQAVCGPLFVIDHAG-S 227 (317)
T ss_dssp HH-TBTTCHHHHHHHH-TTTTBCSSCEEEEECTTCSSSCCCCSSSTTSTTCCB--TS--EEEEHHHHHCTTCCCCTTH-H
T ss_pred Hh-hCcCcHHHHHHHh-cCCCCCCCCEEEEEeCCCCeECCccccccchhhhcc--CC--ccEEeeeccCCCCccCccc-c
Confidence 00 0000011111000 0001136899999999999998765 111111121 11 22222 4778953 2
Q ss_pred cccHHHHHHHHHHHHHH
Q 004735 696 AENIKFTLEQQMVFFAR 712 (732)
Q Consensus 696 ~~~~~~~~~~~~~fl~~ 712 (732)
.++ ...++.+++||+.
T Consensus 228 l~~-p~~~~~v~~~L~~ 243 (317)
T 1tca_A 228 LTS-QFSYVVGRSALRS 243 (317)
T ss_dssp HHB-HHHHHHHHHHHHC
T ss_pred cCC-HHHHHHHHHHhcC
Confidence 223 2346677888775
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-08 Score=103.60 Aligned_cols=260 Identities=13% Similarity=0.085 Sum_probs=144.2
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCC---
Q 004735 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKD--- 164 (732)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~--- 164 (732)
..+++++|+|.+.+||+.... + .|++++..++ +.+.+.... ......+.++.+ .+++....+
T Consensus 45 ~~~~~~~~~~~g~l~~~~~~~---~--~i~~~d~~~~-~~~~~~~~~--------~~~~~~i~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 45 LQLEGLNFDRQGQLFLLDVFE---G--NIFKINPETK-EIKRPFVSH--------KANPAAIKIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp CCEEEEEECTTSCEEEEETTT---C--EEEEECTTTC-CEEEEEECS--------SSSEEEEEECTTSCEEEEECTTSSS
T ss_pred ccccCcEECCCCCEEEEECCC---C--EEEEEeCCCC-cEEEEeeCC--------CCCcceEEECCCCcEEEEeCCCCCC
Confidence 456899999944588877532 3 4677776643 333332111 111233445433 566665544
Q ss_pred -CeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC
Q 004735 165 -QRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (732)
Q Consensus 165 -~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~ 242 (732)
+.|+++|+++ +..+. +.... ......++.++|||+.+ +....... ......||+++.++++ .+.+...
T Consensus 111 ~~~i~~~d~~~--~~~~~~~~~~~--~~~~~~~i~~d~~g~l~-v~~~~~~~--~~~~~~l~~~~~~~~~---~~~~~~~ 180 (333)
T 2dg1_A 111 TGGIFAATENG--DNLQDIIEDLS--TAYCIDDMVFDSKGGFY-FTDFRGYS--TNPLGGVYYVSPDFRT---VTPIIQN 180 (333)
T ss_dssp CCEEEEECTTS--CSCEEEECSSS--SCCCEEEEEECTTSCEE-EEECCCBT--TBCCEEEEEECTTSCC---EEEEEEE
T ss_pred CceEEEEeCCC--CEEEEEEccCc--cCCcccceEECCCCCEE-EEeccccc--cCCCceEEEEeCCCCE---EEEeecC
Confidence 5899999987 65553 33211 13445678899999853 33221100 0113689999998877 6666543
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeee--EEecCCCCCccccCcCceeCCCCcEEEEEe
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKR--VCVAGFDPTIVESPTEPKWSSKGELFFVTD 319 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~--~~~~~~~~~~~~~~~~~~wspDg~l~~~~~ 319 (732)
........|+|||++|++.... ...|+++|++.+|+ .... ......... ..+..+.+++||++++...
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~-------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l~v~~~ 251 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETT-------ANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMY 251 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGG-------GTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEE
T ss_pred CCcccceEECCCCCEEEEEeCC-------CCeEEEEEecCCCcCcccccceEEEecCCC--CCCCceEECCCCCEEEEEc
Confidence 3345678999999988776522 34699999863343 2211 111111100 2445688999998665543
Q ss_pred ccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC---CEEEEEEEECCC
Q 004735 320 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN---GRSYLGILDDFG 390 (732)
Q Consensus 320 ~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~---g~~~ly~~~~~~ 390 (732)
. ...|+++|+++...+.+........... ....+.|.+ +++.||++.... ....||++++..
T Consensus 252 ~---~~~v~~~d~~g~~~~~~~~~~~~~g~~~---~~~~~~~~~---dg~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 252 G---QGRVLVFNKRGYPIGQILIPGRDEGHML---RSTHPQFIP---GTNQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp T---TTEEEEECTTSCEEEEEECTTGGGTCSC---BCCEEEECT---TSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred C---CCEEEEECCCCCEEEEEEcCCCcccccc---CcceEEECC---CCCEEEEEeCccCCCCCceEEEEeccc
Confidence 3 2368888986555555432111000000 012233432 667788777652 346788888654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-08 Score=106.82 Aligned_cols=281 Identities=11% Similarity=0.074 Sum_probs=157.9
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEE
Q 004735 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170 (732)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~ 170 (732)
..++|+| ++.++.... ++...+|..... +........ ... ....+..++ ..+++...++.|.++
T Consensus 60 ~~~~~s~~g~~l~~~~~----d~~v~i~d~~~~---~~~~~~~~~-~~~------~~~~~~~~~-~~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARL----DGHDFLFNTIIR---DGSKMLKRA-DYT------AVDTAKLQM-RRFILGTTEGDIKVL 124 (420)
T ss_dssp TTCEEEEEETTEEEEEE----TTEEEEEECCSE---ETTTTSCSC-CEE------EEEEECSSS-CEEEEEETTSCEEEE
T ss_pred cceeeeecCCeEEEEEc----CCcEEEEEeccc---ceeeEEecC-Cce------EEEEEecCC-CEEEEEECCCCEEEE
Confidence 4789999 888877654 366555654322 211111111 000 001122223 344455567889999
Q ss_pred eCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccc
Q 004735 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPR 250 (732)
Q Consensus 171 d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~ 250 (732)
|+.+ +........ ........+|+|||+.|+....+ ..|.++|+.+++. ...+......+....
T Consensus 125 d~~~--~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d---------~~i~iwd~~~~~~--~~~~~~h~~~v~~~~ 188 (420)
T 3vl1_A 125 DSNF--NLQREIDQA---HVSEITKLKFFPSGEALISSSQD---------MQLKIWSVKDGSN--PRTLIGHRATVTDIA 188 (420)
T ss_dssp CTTS--CEEEEETTS---SSSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTCCC--CEEEECCSSCEEEEE
T ss_pred eCCC--cceeeeccc---ccCccEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCcC--ceEEcCCCCcEEEEE
Confidence 9987 555444322 13456778899999986655442 5889999987762 445554556677889
Q ss_pred cCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCC-C-C------------------ccccCcCceeCC
Q 004735 251 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-P-T------------------IVESPTEPKWSS 310 (732)
Q Consensus 251 ~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~-~-~------------------~~~~~~~~~wsp 310 (732)
|+|||+.|+..+.+ ..|.++|+. +++. ...+.... . . ....+..+.|+|
T Consensus 189 ~~~~~~~l~s~~~d--------~~v~iwd~~-~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 189 IIDRGRNVLSASLD--------GTIRLWECG-TGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp EETTTTEEEEEETT--------SCEEEEETT-TTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred EcCCCCEEEEEcCC--------CcEEEeECC-CCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 99999998866522 238888887 5654 23332110 0 0 003456788999
Q ss_pred CCcEEEEEeccCCeeeEEEEeccCCeEEEec-c-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIY-S-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 311 Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
||++++.... .|. |..+|+.+++..... . ....+.. +.|.+ +++.++++...+|.-.|| ++
T Consensus 258 ~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~v~~---------~~~~~---~~~~~l~~g~~dg~i~vw--d~ 320 (420)
T 3vl1_A 258 YGKYVIAGHV-SGV--ITVHNVFSKEQTIQLPSKFTCSCNS---------LTVDG---NNANYIYAGYENGMLAQW--DL 320 (420)
T ss_dssp TTEEEEEEET-TSC--EEEEETTTCCEEEEECCTTSSCEEE---------EEECS---SCTTEEEEEETTSEEEEE--ET
T ss_pred CCCEEEEEcC-CCe--EEEEECCCCceeEEcccccCCCcee---------EEEeC---CCCCEEEEEeCCCeEEEE--Ec
Confidence 9995555544 344 666777776543322 1 1112222 33432 555466666667765555 66
Q ss_pred CCCc--eEEecc-CCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 389 FGHS--LSLLDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 389 ~~~~--~~~lt~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
.+++ ...+.. ....+..+...++.+++.++ .+ ..+.++++...
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~-~d--~~v~iw~~~~~ 366 (420)
T 3vl1_A 321 RSPECPVGEFLINEGTPINNVYFAAGALFVSSG-FD--TSIKLDIISDP 366 (420)
T ss_dssp TCTTSCSEEEEESTTSCEEEEEEETTEEEEEET-TT--EEEEEEEECCT
T ss_pred CCCcCchhhhhccCCCCceEEEeCCCCEEEEec-CC--ccEEEEeccCC
Confidence 6653 445554 34456666445666555543 33 35666666553
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=110.17 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=67.1
Q ss_pred EEEEEcCCCCCccC-CcccHHHHHHHHC--CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 497 LLVKSHGGPTSEAR-GILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 497 ~vl~~HGg~~~~~~-~~~~~~~~~l~~~--G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
.||++||.+..... ..|..+.+.|.+. |+.|+++|+ |.+....... ... ....+++.+.++.+...... .
T Consensus 7 pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G~g~s~~~~~-~~~----~~~~~~~~~~~~~l~~~~~l-~ 79 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-GKTLREDVEN-SFF----LNVNSQVTTVCQILAKDPKL-Q 79 (279)
T ss_dssp CEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-SSSHHHHHHH-HHH----SCHHHHHHHHHHHHHSCGGG-T
T ss_pred cEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-CCCCcccccc-ccc----cCHHHHHHHHHHHHHhhhhc-c
Confidence 38899997544322 4677788888875 889999997 5432111101 100 11133444445555432111 2
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCc-ceEEEeecC
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDT-FKAGASLYG 606 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~-~~a~v~~~~ 606 (732)
+++.++||||||.++..++. +|+. ++..|++++
T Consensus 80 ~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 80 QGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp TCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred CCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 68999999999999999998 8884 999998775
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-10 Score=123.41 Aligned_cols=161 Identities=11% Similarity=-0.043 Sum_probs=106.4
Q ss_pred CCCCEEEEEcCCCCCccCCcccH-HHHHHHH-CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNL-SIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~-~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
...|.||++||.+... ...|.. .++.|++ .||.|+++|+||.+.... ..... .. ....+|+.+.++++.++..
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~--~~~~~-~~-~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQY--SQASQ-NI-RVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSCH--HHHHH-HH-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCccc--hhhHh-hH-HHHHHHHHHHHHHHHHhcC
Confidence 3468999999985443 233444 5666776 799999999997544321 11110 00 1125778888999876655
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccC-CCCC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFV-DKFS 648 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-~~i~ 648 (732)
++.+++.++|||+||.+++.++. +|++++.++++.|...+... .++...+ ....
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~p~~~~------------------------~~~~~~l~~~da 198 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPYFQD------------------------TPEEVRLDPSDA 198 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBCTTTTT------------------------CCTTTSCCGGGS
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEeccccccccC------------------------CChhhccCcCCC
Confidence 66789999999999999999988 89999999998876432110 0000001 1223
Q ss_pred CCEEEEEeCCCCccCh---HHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 649 CPIILFQGLEDKVVPP---DQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~---~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.++.+||+..|.+||. .... ..| .+..||++||.
T Consensus 199 ~~V~vIHt~~d~lVP~~~~g~~~-------~lg---~~dfypngg~~ 235 (432)
T 1gpl_A 199 KFVDVIHTDISPILPSLGFGMSQ-------KVG---HMDFFPNGGKD 235 (432)
T ss_dssp SEEEEECSCCSCHHHHCCCBCSS-------CCS---SEEEEEGGGSS
T ss_pred ceEEEEEcCCccccccccccccc-------ccc---ceEEccCCCCC
Confidence 5899999999998875 2111 112 45667898994
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.05 E-value=7.1e-08 Score=101.72 Aligned_cols=198 Identities=11% Similarity=-0.009 Sum_probs=116.6
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
...+|||||++++...... ...|.++|+.+++ ..........+....|||||++|+..+.+
T Consensus 137 ~~v~fSpDg~~la~as~~~-------d~~i~iwd~~~~~---~~~~~~~~~~V~~v~fspdg~~l~s~s~~--------- 197 (365)
T 4h5i_A 137 KLVYISREGTVAAIASSKV-------PAIMRIIDPSDLT---EKFEIETRGEVKDLHFSTDGKVVAYITGS--------- 197 (365)
T ss_dssp EEEEECTTSSCEEEEESCS-------SCEEEEEETTTTE---EEEEEECSSCCCEEEECTTSSEEEEECSS---------
T ss_pred EEEEEcCCCCEEEEEECCC-------CCEEEEeECCCCc---EEEEeCCCCceEEEEEccCCceEEeccce---------
Confidence 3467999999876554322 1578899999887 44433444456778999999999877521
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEe-----ccccccc
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI-----YSLDAEF 347 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l-----~~~~~~~ 347 (732)
.+.+++.. +|+........... ..+..++|+|||+ ++..+........++.++...+....+ ......+
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~----~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V 272 (365)
T 4h5i_A 198 SLEVISTV-TGSCIARKTDFDKN----WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI 272 (365)
T ss_dssp CEEEEETT-TCCEEEEECCCCTT----EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE
T ss_pred eEEEEEec-cCcceeeeecCCCC----CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe
Confidence 26677766 56542222222232 5567889999999 555544423344567777766543322 1111111
Q ss_pred CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE-Ee-ccCCCceEEe-eEeCCEEEEEEeCCCCCc
Q 004735 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LL-DIPFTDIDNI-TLGNDCLFVEGASGVEPS 424 (732)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~-~l-t~~~~~v~~~-~~~~~~~~~~~~~~~~~~ 424 (732)
..+.|.| +++.| .+...++.-.| +|+.+++.. .+ ......|..+ ..+++++++.++.. .
T Consensus 273 ---------~~~~~Sp---dg~~l-asgs~D~~V~i--wd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D---~ 334 (365)
T 4h5i_A 273 ---------TSMDVDM---KGELA-VLASNDNSIAL--VKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA---N 334 (365)
T ss_dssp ---------EEEEECT---TSCEE-EEEETTSCEEE--EETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT---S
T ss_pred ---------EeEEECC---CCCce-EEEcCCCEEEE--EECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC---C
Confidence 2334543 56554 45555665445 478777643 33 3346678888 56667776666543 2
Q ss_pred EEEEEEcCC
Q 004735 425 SVAKVTLDD 433 (732)
Q Consensus 425 ~ly~~dl~~ 433 (732)
.|.++|+..
T Consensus 335 tvrvw~ip~ 343 (365)
T 4h5i_A 335 TIHIIKLPL 343 (365)
T ss_dssp EEEEEECCT
T ss_pred eEEEEEcCC
Confidence 455556543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.2e-08 Score=108.83 Aligned_cols=229 Identities=12% Similarity=0.078 Sum_probs=140.5
Q ss_pred eEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 150 ~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
.+++++ ..+++...++.|.++++.+ ...+.+... .......+|+|||+.|+....+ ..|.+++.
T Consensus 309 ~~~~~~~~~l~t~~~d~~i~~w~~~~--~~~~~~~~~----~~~v~~~~~s~~g~~l~~~~~d---------g~v~~~~~ 373 (577)
T 2ymu_A 309 VAFSPDGQTIASASDDKTVKLWNRNG--QHLQTLTGH----SSSVWGVAFSPDGQTIASASDD---------KTVKLWNR 373 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEET
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCC--CeeEEEeCC----CCCEEEEEECCCCCEEEEEeCC---------CEEEEEcC
Confidence 344433 3444555677888899876 555555543 3344567899999987665442 46777887
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
.+.. ...+......+...+|||||++|+..+. ...|.++|.. ++. ...+.+.. ..+..+.|
T Consensus 374 ~~~~---~~~~~~~~~~v~~~~~s~dg~~l~~~~~--------d~~v~~~~~~--~~~--~~~~~~~~----~~v~~~~~ 434 (577)
T 2ymu_A 374 NGQL---LQTLTGHSSSVRGVAFSPDGQTIASASD--------DKTVKLWNRN--GQL--LQTLTGHS----SSVWGVAF 434 (577)
T ss_dssp TCCE---EEEEECCSSCEEEEEECTTSSCEEEEET--------TSEEEEECTT--CCE--EEEEECCS----SCEEEEEE
T ss_pred CCCE---EEEecCCCCCeEEEEECCCCCEEEEEeC--------CCEEEEEeCC--CCE--EEEecCCC----CCeEEEEE
Confidence 6554 5555555555667899999999987662 3458888754 443 34445544 55677899
Q ss_pred CCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 309 spDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
+||++++.+... .+. |..++..+...+.+......+.. +.|.+ +++. +++...++.-.|| +.
T Consensus 435 s~d~~~l~~~~~-d~~--v~~w~~~~~~~~~~~~~~~~v~~---------~~~sp---d~~~-las~~~d~~i~iw--~~ 496 (577)
T 2ymu_A 435 SPDDQTIASASD-DKT--VKLWNRNGQLLQTLTGHSSSVRG---------VAFSP---DGQT-IASASDDKTVKLW--NR 496 (577)
T ss_dssp CTTSSEEEEEET-TSE--EEEEETTSCEEEEEECCSSCEEE---------EEECT---TSCE-EEEEETTSEEEEE--ET
T ss_pred CCCCCEEEEEcC-CCE--EEEEECCCCEEEEEcCCCCCEEE---------EEEcC---CCCE-EEEEeCCCEEEEE--cC
Confidence 999994444444 344 55567665555555443322222 33442 5554 4555566655555 66
Q ss_pred CCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 389 FGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 389 ~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
.+...+.+......|..+ ..+++++++.++.. ..|.++|..+
T Consensus 497 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d---g~v~lwd~~~ 539 (577)
T 2ymu_A 497 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD---KTVKLWNRNG 539 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT---SEEEEECTTS
T ss_pred CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc---CEEEEEeCCC
Confidence 666677777667778777 45556666555533 3577777543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=107.86 Aligned_cols=165 Identities=7% Similarity=-0.045 Sum_probs=87.9
Q ss_pred CCEEEEEeCCCCeEEEEeCC-CCCCCceecCCCCCCCCeEeeceeecCCCCEE-EEEEeccCCCCCC-----ceeEEEEE
Q 004735 154 GDTVIFSNYKDQRLYKHSID-SKDSSPLPITPDYGEPLVSYADGIFDPRFNRY-VTVREDRRQDALN-----STTEIVAI 226 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~-~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l-~~~~~~~~~~~~~-----~~~~l~~~ 226 (732)
+..++..+.. .|.+++++ + ++..++...... + .....+|||||+++ +++.......... ....+.++
T Consensus 51 g~~l~~~~~~--~v~~~~~~~~--g~~~~~~~~~~~-g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~ 124 (365)
T 1jof_A 51 RKNIYGAAMK--KWSSFAVKSP--TEIVHEASHPIG-G-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF 124 (365)
T ss_dssp SSEEEEEEBT--EEEEEEEEET--TEEEEEEEEECC-S-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred CCEEEEEccc--eEEEEEECCC--CCEEEeeEeecC-C-CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEE
Confidence 3345555443 68888876 5 554443211000 1 12457899999974 4443200000000 01345566
Q ss_pred EcC-CCCccccEEcc----cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEec--CCCCCc
Q 004735 227 ALN-GQNIQEPKVLV----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA--GFDPTI 299 (732)
Q Consensus 227 d~~-~~~~~~~~~lt----~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~--~~~~~~ 299 (732)
+++ .|+. ...+. ........+.|||||++|+... . ....|++++++.+|+...+..+. ...
T Consensus 125 ~~~~~g~~--~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~-~------~~~~v~~~~~~~~g~~~~~~~~~~~~~g--- 192 (365)
T 1jof_A 125 SVSETGKL--EKNVQNYEYQENTGIHGMVFDPTETYLYSAD-L------TANKLWTHRKLASGEVELVGSVDAPDPG--- 192 (365)
T ss_dssp EECTTCCE--EEEEEEEECCTTCCEEEEEECTTSSEEEEEE-T------TTTEEEEEEECTTSCEEEEEEEECSSTT---
T ss_pred ccCCCCcC--cceEeeEEeCCCCcceEEEECCCCCEEEEEc-C------CCCEEEEEEECCCCCEEEeeeEecCCCC---
Confidence 665 2441 22222 1234556789999999886543 1 13469999986346654333332 112
Q ss_pred cccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeE
Q 004735 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
..+..+.|+|||+.+|+.+...+...+|.++.++|+.
T Consensus 193 -~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 193 -DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp -CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred -CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 3456779999999444444325666777777767764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-07 Score=97.10 Aligned_cols=269 Identities=12% Similarity=0.046 Sum_probs=151.5
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~ 166 (732)
..+..++|+| ++.++... .++...+|....+ +....+.. +..+..+..++++ ..+++...++.
T Consensus 24 ~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~---~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSS----ADKLIKIWGAYDG---KFEKTISG--------HKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp SCEEEEEECTTSSEEEEEE----TTSCEEEEETTTC---CEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CcEEEEEECCCCCEEEEee----CCCeEEEEeCCCc---ccchhhcc--------CCCceEEEEEcCCCCEEEEECCCCE
Confidence 4567899999 66554432 3466667765332 22222111 1223344555533 45556567888
Q ss_pred EEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 167 LYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 167 l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
|.++|+.+ ++. ..+... ........|+|+|+.|+....+ ..|.++|+.+++. ...+......
T Consensus 89 i~vwd~~~--~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~--~~~~~~~~~~ 151 (312)
T 4ery_A 89 LKIWDVSS--GKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFD---------ESVRIWDVKTGKC--LKTLPAHSDP 151 (312)
T ss_dssp EEEEETTT--CCEEEEEECC----SSCEEEEEECSSSSEEEEEETT---------SCEEEEETTTCCE--EEEECCCSSC
T ss_pred EEEEECCC--CcEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCEE--EEEecCCCCc
Confidence 99999987 443 334332 2345667899999986655442 4788899988761 3344444455
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEec-CCCCCccccCcCceeCCCCcEEEEEeccCCe
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDPTIVESPTEPKWSSKGELFFVTDRKNGF 324 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~-~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~ 324 (732)
.....|+|||+.|+..+. ...|.++|+. +++. ...+. ... ..+..+.|+|||+.++.... .+
T Consensus 152 v~~~~~~~~~~~l~~~~~--------d~~i~~wd~~-~~~~--~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~-d~- 214 (312)
T 4ery_A 152 VSAVHFNRDGSLIVSSSY--------DGLCRIWDTA-SGQC--LKTLIDDDN----PPVSFVKFSPNGKYILAATL-DN- 214 (312)
T ss_dssp EEEEEECTTSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCSSC----CCEEEEEECTTSSEEEEEET-TT-
T ss_pred EEEEEEcCCCCEEEEEeC--------CCcEEEEECC-CCce--eeEEeccCC----CceEEEEECCCCCEEEEEcC-CC-
Confidence 667899999998876652 2348999988 6654 23232 222 34566899999994444444 34
Q ss_pred eeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEeccCCCce
Q 004735 325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDI 403 (732)
Q Consensus 325 ~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~~~~v 403 (732)
.|..+|..+++...............+ ..+.. .++.++++...++.-.| +++.+++. +.+......+
T Consensus 215 -~i~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~l~sg~~dg~i~v--wd~~~~~~~~~~~~h~~~v 282 (312)
T 4ery_A 215 -TLKLWDYSKGKCLKTYTGHKNEKYCIF------ANFSV---TGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVV 282 (312)
T ss_dssp -EEEEEETTTTEEEEEECSSCCSSSCCC------EEEEC---SSSCEEEECCTTSCEEE--EETTTCCEEEEECCCSSCE
T ss_pred -eEEEEECCCCcEEEEEEecCCceEEEE------EEEEe---CCCcEEEEECCCCEEEE--EECCCchhhhhhhccCCcE
Confidence 466678877765443322111000000 01111 34445555555665444 57777664 3454445556
Q ss_pred EEe-eEeCCEEEEEEe
Q 004735 404 DNI-TLGNDCLFVEGA 418 (732)
Q Consensus 404 ~~~-~~~~~~~~~~~~ 418 (732)
..+ ..+++.+++.++
T Consensus 283 ~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 283 ISTACHPTENIIASAA 298 (312)
T ss_dssp EEEEECSSSSEEEEEE
T ss_pred EEEeecCcCCceEEEE
Confidence 665 344455555444
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.8e-08 Score=99.99 Aligned_cols=230 Identities=12% Similarity=0.022 Sum_probs=133.4
Q ss_pred ceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 148 ~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.+..++++ ..+++...++.|.++|+.+ ++. ..+... ......+.|+|||++|+....+ ..|.+
T Consensus 36 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------g~i~i 100 (369)
T 3zwl_B 36 TQVKYNKEGDLLFSCSKDSSASVWYSLN--GERLGTLDGH----TGTIWSIDVDCFTKYCVTGSAD---------YSIKL 100 (369)
T ss_dssp EEEEECTTSCEEEEEESSSCEEEEETTT--CCEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------TEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCCC--chhhhhhhhc----CCcEEEEEEcCCCCEEEEEeCC---------CeEEE
Confidence 34445433 4555555678899999987 443 344433 3456778899999987665442 57999
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce-ee--------eEEecCCC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YK--------RVCVAGFD 296 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~-~~--------~~~~~~~~ 296 (732)
+|+.+++ ...............|+|||+.|+....+... ....|.++|+. .+.. .. ...+....
T Consensus 101 wd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~---~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 101 WDVSNGQ---CVATWKSPVPVKRVEFSPCGNYFLAILDNVMK---NPGSINIYEIE-RDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EETTTCC---EEEEEECSSCEEEEEECTTSSEEEEEECCBTT---BCCEEEEEEEE-ECTTTCCEEEECSSCSEEEECCT
T ss_pred EECCCCc---EEEEeecCCCeEEEEEccCCCEEEEecCCccC---CCCEEEEEEec-CCccceeecccccceeeeccCCc
Confidence 9999887 54444455566778999999999877633111 23568888887 3321 11 11111211
Q ss_pred CCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC-CeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEE
Q 004735 297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 297 ~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~-g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 374 (732)
.. ..+..+.|+|||++++.... .| .|.++|+.+ ++.. .+......+....|++ +++.|+ +
T Consensus 174 ~~--~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~l~-~ 235 (369)
T 3zwl_B 174 GL--DAATVAGWSTKGKYIIAGHK-DG--KISKYDVSNNYEYVDSIDLHEKSISDMQFSP------------DLTYFI-T 235 (369)
T ss_dssp TC--CCEEEEEECGGGCEEEEEET-TS--EEEEEETTTTTEEEEEEECCSSCEEEEEECT------------TSSEEE-E
T ss_pred Cc--cceeEEEEcCCCCEEEEEcC-CC--EEEEEECCCCcEeEEEEecCCCceeEEEECC------------CCCEEE-E
Confidence 00 15677889999994444444 34 466778776 4433 3322222222333332 555554 4
Q ss_pred EEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeC
Q 004735 375 YRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 375 s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~ 419 (732)
...++. |+++++.+++..........+..+ ..+++..++.++.
T Consensus 236 ~~~d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 236 SSRDTN--SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGG 279 (369)
T ss_dssp EETTSE--EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEEC
T ss_pred ecCCce--EEEEECCCCceeeeecCCCCceeEEecCCCceEEEeec
Confidence 445554 555677777655444445555555 3445555555543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-08 Score=109.13 Aligned_cols=251 Identities=9% Similarity=0.066 Sum_probs=148.1
Q ss_pred ceeEEEC--CEEEEEeCCCCeEEEEeCC--CCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 148 GAFRIFG--DTVIFSNYKDQRLYKHSID--SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 148 ~~~~~~~--~~i~f~~~~~~~l~~~d~~--~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
.+..+++ ..++++...++.|.++++. ++ ...+.+.... ........+|+|||++|+.... ...+
T Consensus 106 ~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~---------~g~v 173 (450)
T 2vdu_B 106 RNLRLTSDESRLIACADSDKSLLVFDVDKTSK-NVLKLRKRFC--FSKRPNAISIAEDDTTVIIADK---------FGDV 173 (450)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-SCEEEEEEEE--CSSCEEEEEECTTSSEEEEEET---------TSEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-ceeeeeeccc--CCCCceEEEEcCCCCEEEEEeC---------CCcE
Confidence 3445543 3556777678888888887 52 3333333110 0233467789999998766543 2578
Q ss_pred EEEEcCCCCccccE-----EcccCCCceeccccCCC---CCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE-ecC
Q 004735 224 VAIALNGQNIQEPK-----VLVSGSDFYAFPRMDPR---GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAG 294 (732)
Q Consensus 224 ~~~d~~~~~~~~~~-----~lt~~~~~~~~p~~SPD---G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~-~~~ 294 (732)
+++++.+++ .. .+......+....|||| |+.|+..+.+ ..|+++|+. +++. +.. +.+
T Consensus 174 ~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d--------~~i~vwd~~-~~~~--~~~~~~~ 239 (450)
T 2vdu_B 174 YSIDINSIP---EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD--------EHIKISHYP-QCFI--VDKWLFG 239 (450)
T ss_dssp EEEETTSCC---CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT--------SCEEEEEES-CTTC--EEEECCC
T ss_pred EEEecCCcc---cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC--------CcEEEEECC-CCce--eeeeecC
Confidence 999988765 32 33333445667899999 8888766522 348999998 6654 232 334
Q ss_pred CCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccC--------C---------Cceeeccc
Q 004735 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS--------R---------PLWVFGIN 357 (732)
Q Consensus 295 ~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~--------~---------~~w~~~~~ 357 (732)
.. ..+..+.|+ ||+++++... .+ .|.++|+.+++............ . ........
T Consensus 240 h~----~~v~~~~~s-d~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 240 HK----HFVSSICCG-KDYLLLSAGG-DD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp CS----SCEEEEEEC-STTEEEEEES-SS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred CC----CceEEEEEC-CCCEEEEEeC-CC--eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 43 567788999 9985545443 34 57777888876543332110000 0 01111123
Q ss_pred ceeeeeecCCCCEEEEEEEECCEEEEEEE-ECCCCceE---EeccCCCceEEeeEeCCEEEEEEeCCCCCc------EEE
Q 004735 358 SYEIIQSHGEKNLIACSYRQNGRSYLGIL-DDFGHSLS---LLDIPFTDIDNITLGNDCLFVEGASGVEPS------SVA 427 (732)
Q Consensus 358 ~~~~~~~~~~~~~l~~~s~~~g~~~ly~~-~~~~~~~~---~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~------~ly 427 (732)
.+.|.+ +++.|+..+..++.-.||.+ +..++.++ .+..+ ..+..+....+.+++...+...+. ++|
T Consensus 312 ~i~~~~---~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 312 KIIKSK---NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEECS---SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEeC---CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 345553 66777766656777777776 33333333 33333 557777433366777776665553 799
Q ss_pred EEEcCCCcc
Q 004735 428 KVTLDDHKL 436 (732)
Q Consensus 428 ~~dl~~~~~ 436 (732)
.++.++++.
T Consensus 388 ~~~~~~~~~ 396 (450)
T 2vdu_B 388 EYNLNENSF 396 (450)
T ss_dssp EEETTTTEE
T ss_pred EEEcCCCeE
Confidence 999887765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-08 Score=106.49 Aligned_cols=119 Identities=8% Similarity=-0.014 Sum_probs=66.7
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCC--CCeEeeceeecCCCCEEEEEEeccCCCCCC---ceeEEEEEE
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGE--PLVSYADGIFDPRFNRYVTVREDRRQDALN---STTEIVAIA 227 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~~~---~~~~l~~~d 227 (732)
+..+++....++.|+++|+++ ++.. .+...... .......+.|||||++|++...+....... ....|+++|
T Consensus 54 g~~~~v~~~~~~~i~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d 131 (349)
T 1jmx_B 54 NRTAYVLNNHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFS 131 (349)
T ss_dssp SSEEEEEETTTTEEEEEETTT--TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred CCEEEEEeCCCCcEEEEeCCC--CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEE
Confidence 446777776778999999987 5443 33221100 011135678999999977766431000000 026899999
Q ss_pred cCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce
Q 004735 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV 286 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~ 286 (732)
+++++..................|||||+ |+... . +|+++|+. +|+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~--------~i~~~d~~-~~~~ 178 (349)
T 1jmx_B 132 TADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--P--------DIYKMDVK-TGKY 178 (349)
T ss_dssp GGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--S--------SEEEECTT-TCCE
T ss_pred CCCccccceeeeccCCCcccceeECCCCc-EEEcc--C--------cEEEEeCC-CCce
Confidence 98855100111222233344556999999 65431 1 17778776 5654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-07 Score=104.56 Aligned_cols=233 Identities=14% Similarity=0.118 Sum_probs=140.6
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
+..++++ ..+++...++.|.+++..+ ...+.+... .......+|+|||+.|+....+ ..|.+++
T Consensus 267 ~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h----~~~v~~~~~~~~~~~l~t~~~d---------~~i~~w~ 331 (577)
T 2ymu_A 267 GVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGH----SSSVWGVAFSPDGQTIASASDD---------KTVKLWN 331 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecC----CCCeEEEEECCCCCEEEEEeCC---------CeEEEEe
Confidence 3344433 3444555677899999874 444455443 3345667899999987665442 3577778
Q ss_pred cCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
+.+.. ...+...........|||||+.|+... ....+.++|.. ++. ...+.+.. ..+..+.
T Consensus 332 ~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~--------~dg~v~~~~~~--~~~--~~~~~~~~----~~v~~~~ 392 (577)
T 2ymu_A 332 RNGQH---LQTLTGHSSSVWGVAFSPDGQTIASAS--------DDKTVKLWNRN--GQL--LQTLTGHS----SSVRGVA 392 (577)
T ss_dssp TTSCE---EEEECCCSSCEEEEEECTTSSEEEEEE--------TTSEEEEEETT--CCE--EEEEECCS----SCEEEEE
T ss_pred CCCCe---eEEEeCCCCCEEEEEECCCCCEEEEEe--------CCCEEEEEcCC--CCE--EEEecCCC----CCeEEEE
Confidence 87766 666655555566788999999998765 23457788854 443 34444443 5567889
Q ss_pred eCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 308 wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
|+|||+++.+... .+ .|.+++..+...+.+......+. .+.|.+ +++.| ++...++.-.|| +
T Consensus 393 ~s~dg~~l~~~~~-d~--~v~~~~~~~~~~~~~~~~~~~v~---------~~~~s~---d~~~l-~~~~~d~~v~~w--~ 454 (577)
T 2ymu_A 393 FSPDGQTIASASD-DK--TVKLWNRNGQLLQTLTGHSSSVW---------GVAFSP---DDQTI-ASASDDKTVKLW--N 454 (577)
T ss_dssp ECTTSSCEEEEET-TS--EEEEECTTCCEEEEEECCSSCEE---------EEEECT---TSSEE-EEEETTSEEEEE--E
T ss_pred ECCCCCEEEEEeC-CC--EEEEEeCCCCEEEEecCCCCCeE---------EEEECC---CCCEE-EEEcCCCEEEEE--E
Confidence 9999993334433 34 35556765544454443322222 233442 55554 455556655554 6
Q ss_pred CCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 388 DFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 388 ~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..+...+.+......+..+ ..+++++++.++.. ..|.++|..+...
T Consensus 455 ~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d---~~i~iw~~~~~~~ 501 (577)
T 2ymu_A 455 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD---KTVKLWNRNGQLL 501 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSCEEEEEETT---SEEEEEETTSCEE
T ss_pred CCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEcCCCCEE
Confidence 7776677777777778777 45566666655533 3577778654433
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-07 Score=98.81 Aligned_cols=280 Identities=8% Similarity=-0.018 Sum_probs=157.7
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeEEEE
Q 004735 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLYKH 170 (732)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l~~~ 170 (732)
..+.|+ ++.+..... ++...+|.... | +...+.... +...+.+..++++ ..+++...++.|.++
T Consensus 97 ~~~~~s-~~~l~~~~~----d~~v~lw~~~~--~-~~~~~~~~~-------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 97 NLLDWS-NLNVVAVAL----ERNVYVWNADS--G-SVSALAETD-------ESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp BCEEEC-TTSEEEEEE----TTEEEEEETTT--C-CEEEEEECC-------TTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEeec-CCCEEEEEC----CCeEEEeeCCC--C-cEeEeeecC-------CCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 457777 555554432 46655565432 2 332222111 1122344555533 344555567889999
Q ss_pred eCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccc
Q 004735 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPR 250 (732)
Q Consensus 171 d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~ 250 (732)
|+.++ ...+.+... ........| +++.++.... . ..|.++|+..... ....+......+....
T Consensus 162 d~~~~-~~~~~~~~~----~~~v~~~~~--~~~~l~~~~~-d--------g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~ 224 (401)
T 4aez_A 162 DVESQ-TKLRTMAGH----QARVGCLSW--NRHVLSSGSR-S--------GAIHHHDVRIANH-QIGTLQGHSSEVCGLA 224 (401)
T ss_dssp ETTTC-CEEEEECCC----SSCEEEEEE--ETTEEEEEET-T--------SEEEEEETTSSSC-EEEEEECCSSCEEEEE
T ss_pred ECcCC-eEEEEecCC----CCceEEEEE--CCCEEEEEcC-C--------CCEEEEecccCcc-eeeEEcCCCCCeeEEE
Confidence 99872 233444433 334455667 5666544433 2 5888999884320 0334444455667789
Q ss_pred cCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEE
Q 004735 251 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK 329 (732)
Q Consensus 251 ~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~ 329 (732)
|+|||+.|+..+. ...|.++|+. +++. ...+.... ..+..+.|+|+|. ++..... .....|..
T Consensus 225 ~~~~~~~l~s~~~--------d~~v~iwd~~-~~~~--~~~~~~~~----~~v~~~~~~p~~~~ll~~~~g-s~d~~i~i 288 (401)
T 4aez_A 225 WRSDGLQLASGGN--------DNVVQIWDAR-SSIP--KFTKTNHN----AAVKAVAWCPWQSNLLATGGG-TMDKQIHF 288 (401)
T ss_dssp ECTTSSEEEEEET--------TSCEEEEETT-CSSE--EEEECCCS----SCCCEEEECTTSTTEEEEECC-TTTCEEEE
T ss_pred EcCCCCEEEEEeC--------CCeEEEccCC-CCCc--cEEecCCc----ceEEEEEECCCCCCEEEEecC-CCCCEEEE
Confidence 9999998887662 2348999998 6654 34444443 5678899999988 7766542 12345777
Q ss_pred EeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEE-ECCEEEEEEEECCCCceEE---eccCCCceEE
Q 004735 330 WIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSLSL---LDIPFTDIDN 405 (732)
Q Consensus 330 ~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~-~~g~~~ly~~~~~~~~~~~---lt~~~~~v~~ 405 (732)
+|..+++..........+....|++ +++.++.++. .+|.-.||.+. +++... +......+..
T Consensus 289 ~d~~~~~~~~~~~~~~~v~~~~~s~------------~~~~l~~~~g~~dg~i~v~~~~--~~~~~~~~~~~~h~~~v~~ 354 (401)
T 4aez_A 289 WNAATGARVNTVDAGSQVTSLIWSP------------HSKEIMSTHGFPDNNLSIWSYS--SSGLTKQVDIPAHDTRVLY 354 (401)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECS------------SSSEEEEEECTTTCEEEEEEEE--TTEEEEEEEEECCSSCCCE
T ss_pred EECCCCCEEEEEeCCCcEEEEEECC------------CCCeEEEEeecCCCcEEEEecC--CccceeEEEecCCCCCEEE
Confidence 8888876554443332333334443 6666665542 46666666554 444332 3344555666
Q ss_pred e-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 406 I-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 406 ~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+ ..+++.+++.++.. ..|.++++.+++.
T Consensus 355 ~~~s~dg~~l~s~~~d---g~i~iw~~~~~~~ 383 (401)
T 4aez_A 355 SALSPDGRILSTAASD---ENLKFWRVYDGDH 383 (401)
T ss_dssp EEECTTSSEEEEECTT---SEEEEEECCC---
T ss_pred EEECCCCCEEEEEeCC---CcEEEEECCCCcc
Confidence 6 44555666555433 4688888877753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.97 E-value=5.1e-08 Score=104.23 Aligned_cols=245 Identities=11% Similarity=0.043 Sum_probs=140.6
Q ss_pred CceeEEEC--CEEEEEeCCCCeEEEEeCCCCCCC--------ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCC
Q 004735 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSS--------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDA 216 (732)
Q Consensus 147 ~~~~~~~~--~~i~f~~~~~~~l~~~d~~~~~~~--------~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 216 (732)
+.++.+++ +.++++...++.|.++++.+ +. ...+... ........|+|+|+.++++....
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~--~~~~~~~~~~~~~~~~h----~~~v~~~~~~p~~~~~l~s~~~d---- 153 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPD--GGLVLPLREPVITLEGH----TKRVGIVAWHPTAQNVLLSAGCD---- 153 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCT--TCCSSCBCSCSEEEECC----SSCEEEEEECSSBTTEEEEEETT----
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccC--CCCccccCCceEEecCC----CCeEEEEEECcCCCCEEEEEcCC----
Confidence 44555654 45666767788999999986 32 1223322 34456788999995445554432
Q ss_pred CCceeEEEEEEcCCCCccccEEc--ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe-c
Q 004735 217 LNSTTEIVAIALNGQNIQEPKVL--VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-A 293 (732)
Q Consensus 217 ~~~~~~l~~~d~~~~~~~~~~~l--t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~-~ 293 (732)
..|.++|+.+++. ...+ ......+....|+|||+.|+..+ ....|.++|+. +++. +..+ .
T Consensus 154 ----g~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~iwd~~-~~~~--~~~~~~ 216 (402)
T 2aq5_A 154 ----NVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSC--------RDKRVRVIEPR-KGTV--VAEKDR 216 (402)
T ss_dssp ----SCEEEEETTTTEE--EEEECTTTCCSCEEEEEECTTSSCEEEEE--------TTSEEEEEETT-TTEE--EEEEEC
T ss_pred ----CEEEEEECCCCCc--cEEEecCCCCCceEEEEECCCCCEEEEEe--------cCCcEEEEeCC-CCce--eeeecc
Confidence 4788899988761 2334 33445667789999999998776 23459999998 6654 3333 3
Q ss_pred CCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeE-EEec--ccccccCCCceeecccceeeeeecCCCCE
Q 004735 294 GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNL 370 (732)
Q Consensus 294 ~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~-~~l~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 370 (732)
... . ..+..+.|+|||++++..........|.++|+.+++. ..+. ..........|++ +++.
T Consensus 217 ~~~-~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~------------~~~~ 281 (402)
T 2aq5_A 217 PHE-G--TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP------------DTNI 281 (402)
T ss_dssp SSC-S--SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET------------TTTE
T ss_pred CCC-C--CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC------------CCCE
Confidence 332 1 2367789999998554442113345677888876542 1111 1111222233333 7777
Q ss_pred EEEEEEECCEEEEEEEECCCCc--eEEeccC--CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 371 IACSYRQNGRSYLGILDDFGHS--LSLLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 371 l~~~s~~~g~~~ly~~~~~~~~--~~~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
++++...++.-.+|.+ .+++ ...+... ...+..+ ..+++.+++ + .. ..+.++++.+++.+.+.
T Consensus 282 l~~~g~~dg~i~i~d~--~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~--s-~~--~~~~~~~l~~~~~~~i~ 349 (402)
T 2aq5_A 282 VYLCGKGDSSIRYFEI--TSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV--N-KC--EIARFYKLHERKCEPIA 349 (402)
T ss_dssp EEEEETTCSCEEEEEE--CSSTTCEEEEEEECCSSCCSEEEECCGGGSCG--G-GT--EEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCeEEEEEe--cCCCcceEeecccccCCcccceEEecccccce--e-cc--eeEEEEEcCCCcEEEEE
Confidence 7766656776666655 4444 4444432 2445555 233333322 1 11 24556666666655443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-08 Score=104.88 Aligned_cols=173 Identities=13% Similarity=-0.025 Sum_probs=97.6
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC-CCCccccEEccc--CCCceeccccCCCCCeE-EEEeccCCCC-
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNIQEPKVLVS--GSDFYAFPRMDPRGERM-AWIEWHHPNM- 268 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~lt~--~~~~~~~p~~SPDG~~l-a~~~~~~~~~- 268 (732)
...+|||||++|+.+.. ..|.+++++ +++ ...+.. ..+......|||||++| +|+. +....
T Consensus 43 ~~~a~spdg~~l~~~~~----------~~v~~~~~~~~g~---~~~~~~~~~~g~~~~~~~spdg~~l~~~~~-~~~~~~ 108 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAM----------KKWSSFAVKSPTE---IVHEASHPIGGHPRANDADTNTRAIFLLAA-KQPPYA 108 (365)
T ss_dssp SEEEECTTSSEEEEEEB----------TEEEEEEEEETTE---EEEEEEEECCSSGGGGCTTSCCEEEEEEEC-SSTTCC
T ss_pred cEEEECCCCCEEEEEcc----------ceEEEEEECCCCC---EEEeeEeecCCCCccEEECCCCCEEEEEEe-cCCcce
Confidence 55779999998765543 156666665 565 444321 11223457899999974 4444 20000
Q ss_pred CC------CccEEEEEEecCCCceeee-EEec-CCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEecc-CCeEEE
Q 004735 269 PW------DKAELWVGYISENGDVYKR-VCVA-GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEVLA 339 (732)
Q Consensus 269 ~~------~~~~l~v~d~~~~g~~~~~-~~~~-~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~-~g~~~~ 339 (732)
.+ ....+.+++++.+|+.... ..+. ... ..+..+.|+|||+.+|+++. +...|++++.+ +|+.+.
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~spdG~~l~~~~~--~~~~v~~~~~~~~g~~~~ 182 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQEN----TGIHGMVFDPTETYLYSADL--TANKLWTHRKLASGEVEL 182 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTT----CCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCEEE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEEeCCC----CcceEEEECCCCCEEEEEcC--CCCEEEEEEECCCCCEEE
Confidence 00 1345778888645665322 2221 111 34668899999995556654 33467777777 777654
Q ss_pred ecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 340 IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 340 l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
+....... . . .+...+.|.+ +++.+|+..+.++...+|.++.++++.
T Consensus 183 ~~~~~~~~-~-g--~~p~~~~~sp---dg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 183 VGSVDAPD-P-G--DHPRWVAMHP---TGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp EEEEECSS-T-T--CCEEEEEECT---TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred eeeEecCC-C-C--CCCCEeEECC---CCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 42111000 0 0 0122344554 777887776667777888888766664
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-10 Score=125.85 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=87.6
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEcCC-CCCCCChhhHHhhccCCCc
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYG-GSTGYGREFRERLLGRWGI 552 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~r-G~~g~g~~~~~~~~~~~~~ 552 (732)
+...+|.|.... ++++.|+||++|||++...... +.. .......|++|+.+||| |..|+.........++
T Consensus 99 l~lnv~~P~~~~----~~~~~Pv~v~iHGG~~~~g~~~~~~~-~~la~~~g~vvv~~nYRlg~~gf~~~~~~~~~~n--- 170 (542)
T 2h7c_A 99 LYLNIYTPADLT----KKNRLPVMVWIHGGGLMVGAASTYDG-LALAAHENVVVVTIQYRLGIWGFFSTGDEHSRGN--- 170 (542)
T ss_dssp CEEEEEECSCTT----SCCCEEEEEEECCSTTTSCCSTTSCC-HHHHHHHTCEEEEECCCCHHHHHCCCSSTTCCCC---
T ss_pred cEEEEEECCCCC----CCCCCCEEEEECCCcccCCCccccCH-HHHHhcCCEEEEecCCCCccccCCCCCcccCccc---
Confidence 445577886521 2456899999999876543332 222 22333479999999999 4333222111111222
Q ss_pred ccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCcCC
Q 004735 553 VDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVAD 609 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~~d 609 (732)
....|+.++++|+.++ ...|++||.|+|+|+||++++.++.. +.+|+++|+.+|...
T Consensus 171 ~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 171 WGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 3378999999999765 45799999999999999999988873 679999999998654
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-10 Score=124.57 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=86.8
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHHCC-CEEEEEcCCCC-CCCChhhH--HhhccC
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRG-WAFVDVNYGGS-TGYGREFR--ERLLGR 549 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~~G-~~v~~~d~rG~-~g~g~~~~--~~~~~~ 549 (732)
+...+|.|.. ..++.|+||++|||++....... ......|+++| ++|+.+|||.. .|++.... ......
T Consensus 85 l~l~v~~P~~------~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~~~~~~ 158 (498)
T 2ogt_A 85 LYLNIWSPAA------DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGEAYAQ 158 (498)
T ss_dssp CEEEEEESCS------SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTCGGGTT
T ss_pred cEEEEEecCC------CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhccccccC
Confidence 4445567753 24668999999999754332221 12245677765 99999999931 12221110 000111
Q ss_pred CCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcCC
Q 004735 550 WGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVAD 609 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~d 609 (732)
.+...+.|+.++++|+.++ ...|+++|.|+|+|+||++++.++. ...+|+++|+.+|...
T Consensus 159 ~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 159 AGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp GGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred CCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 1223488999999999875 3468999999999999999988877 3568999999999765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-07 Score=98.05 Aligned_cols=241 Identities=7% Similarity=-0.000 Sum_probs=124.9
Q ss_pred eEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCC-CCCCceeEEEEEEcCCCCccccEEcccC-
Q 004735 166 RLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLVSG- 242 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~lt~~- 242 (732)
.|+++|+++ ++.. .+..+ .. ..+.+||||+++++....... ......+.|.++|+++.+. ...+.-+
T Consensus 48 ~v~v~D~~t--~~~~~~i~~g-----~~-p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--~~~i~~~~ 117 (373)
T 2mad_H 48 QQWVLDAGS--GSILGHVNGG-----FL-PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPD 117 (373)
T ss_pred EEEEEECCC--CeEEEEecCC-----CC-CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--EEEEECCC
Confidence 689999987 5433 33322 22 278899999996655421100 0000025788999987651 2222211
Q ss_pred -C-----CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee-EEecCC---CCCccccCcCceeCCCC
Q 004735 243 -S-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR-VCVAGF---DPTIVESPTEPKWSSKG 312 (732)
Q Consensus 243 -~-----~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~-~~~~~~---~~~~~~~~~~~~wspDg 312 (732)
. ..-..+.|||||++|++..... ...|.++| + +++.... ....+. .+. ........++||
T Consensus 118 ~~~~~~g~~p~~~~~spDG~~l~v~n~~~------~~~v~viD-~-t~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~dg 187 (373)
T 2mad_H 118 APRFDVGPYSWMNANTPNNADLLFFQFAA------GPAVGLVV-Q-GGSSDDQLLSSPTCYHIHPG--APSTFYLLCAQG 187 (373)
T ss_pred ccccccCCCccceEECCCCCEEEEEecCC------CCeEEEEE-C-CCCEEeEEcCCCceEEEEeC--CCceEEEEcCCC
Confidence 1 1223578999999998765221 24599999 7 7776322 111110 000 000112233444
Q ss_pred c--------------------------------------EEEEEeccCCeeeEEEEeccCCeEEEeccc---ccccCCCc
Q 004735 313 E--------------------------------------LFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPL 351 (732)
Q Consensus 313 ~--------------------------------------l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~---~~~~~~~~ 351 (732)
+ ++|.+.. ..++.+|..++..+.+... ........
T Consensus 188 ~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~v~vid~~~~~~~v~~~~~~~~~~~~~~~ 263 (373)
T 2mad_H 188 GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS----GKILQADISAAGATNKAPIDALSGGRKADT 263 (373)
T ss_pred CEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCC----ceEEEEeccCCcceEeeeeeecCCcccccc
Confidence 4 2222211 1466666655433322211 00111234
Q ss_pred eeecc-cceeeeeecCCCCEEEEEEEEC-------CEEEEEEEECCCCce-EEeccCCCceEEe--eEeCCEEEEEEeCC
Q 004735 352 WVFGI-NSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASG 420 (732)
Q Consensus 352 w~~~~-~~~~~~~~~~~~~~l~~~s~~~-------g~~~ly~~~~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~~~~~~ 420 (732)
|.+.. ..+.+.+ +++++|+..... +...|+++|++++++ +.+..+.. ...+ +.+++.++|.....
T Consensus 264 ~~p~g~~~~~~s~---d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~-p~~i~~s~Dg~~~l~v~~~~ 339 (373)
T 2mad_H 264 WRPGGWQQVAYLK---SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD-VDAISVAQDGGPDLYALSAG 339 (373)
T ss_pred eecCceEeEEECC---CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC-cCeEEECCCCCeEEEEEcCC
Confidence 44432 1234443 777888766421 235799999998876 56655432 2333 44444366655422
Q ss_pred CCCcEEEEEEcCCCcc
Q 004735 421 VEPSSVAKVTLDDHKL 436 (732)
Q Consensus 421 ~~~~~ly~~dl~~~~~ 436 (732)
...|+++|++++++
T Consensus 340 --~~~V~ViD~~t~~v 353 (373)
T 2mad_H 340 --TEVLHIYDAGAGDQ 353 (373)
T ss_pred --CCeEEEEECCCCCE
Confidence 25799999998875
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.4e-09 Score=102.93 Aligned_cols=191 Identities=9% Similarity=-0.012 Sum_probs=109.8
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.. ...|..+...|. .++.|+.+|++|.. ...+++.+.++.+. ..+
T Consensus 22 ~~~l~~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~g~~----------------~~~~~~~~~i~~~~-----~~~ 77 (244)
T 2cb9_A 22 GKNLFCFPPISGF--GIYFKDLALQLN-HKAAVYGFHFIEED----------------SRIEQYVSRITEIQ-----PEG 77 (244)
T ss_dssp SSEEEEECCTTCC--GGGGHHHHHHTT-TTSEEEEECCCCST----------------THHHHHHHHHHHHC-----SSS
T ss_pred CCCEEEECCCCCC--HHHHHHHHHHhC-CCceEEEEcCCCHH----------------HHHHHHHHHHHHhC-----CCC
Confidence 4679999997433 355666666664 58999999998631 11455555555442 135
Q ss_pred cEEEEEcChHHHHHHHHHh-C---CCcceEEEeecCcCCHHHHH-----hhcchh-hhhhhhhhcCChhhhhhcCc-ccc
Q 004735 575 RLCITGGSAGGYTTLAALA-F---RDTFKAGASLYGVADLSMLR-----AETHKF-ESRYIDNLVGSEKDYYEKSP-INF 643 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~---p~~~~a~v~~~~~~d~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~sp-~~~ 643 (732)
++.++|||+||.+++.++. . +++++.++++++......+. .....+ .......+......+..+.. ...
T Consensus 78 ~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (244)
T 2cb9_A 78 PYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQSITADTENDDSAAYLPEAVRETVMQKKRCYQEYWAQLIN 157 (244)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSCCCCC-------CCSCHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred CEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCcccccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7999999999999998886 3 67889888887653210000 000000 00000000000001111100 123
Q ss_pred CCCCCCCEEEEEeC--CCCccChHHHHHHHHHHHhC-CCCEEEEEeCCCCcc-CCCcccHHHHHHHHHHHHHHHhC
Q 004735 644 VDKFSCPIILFQGL--EDKVVPPDQARKIYKALKEN-GLPVALVEYEGEQHG-FRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 644 ~~~i~~P~Lii~G~--~D~~v~~~~~~~~~~~l~~~-g~~~~~~~~~~~gH~-~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
...+++|+++++|+ +|.+ ++... ..+.+. ..+++++.+++ +|. +...+....+.+.+.+||.+...
T Consensus 158 ~~~i~~Pvl~i~g~~~~D~~-~~~~~----~~w~~~~~~~~~~~~i~g-gH~~~~~~~~~~~~~~~i~~~L~~~~~ 227 (244)
T 2cb9_A 158 EGRIKSNIHFIEAGIQTETS-GAMVL----QKWQDAAEEGYAEYTGYG-AHKDMLEGEFAEKNANIILNILDKINS 227 (244)
T ss_dssp CSCBSSEEEEEECSBCSCCC-HHHHT----TSSGGGBSSCEEEEECSS-BGGGTTSHHHHHHHHHHHHHHHHTC--
T ss_pred CCCcCCCEEEEEccCccccc-cccch----hHHHHhcCCCCEEEEecC-ChHHHcChHHHHHHHHHHHHHHhcCcc
Confidence 56788999999999 8873 33222 222222 23679999996 883 34445667777788888875543
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-10 Score=127.16 Aligned_cols=127 Identities=19% Similarity=0.232 Sum_probs=85.7
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-cc--HH-HHHHH-HCCCEEEEEcCCCCC-CC--ChhhHHh
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LN--LS-IQYWT-SRGWAFVDVNYGGST-GY--GREFRER 545 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~--~~-~~~l~-~~G~~v~~~d~rG~~-g~--g~~~~~~ 545 (732)
.+...+|.|.... +.++.|+||++|||++...... +. .+ ...++ ..|++|+.+|||... |+ +......
T Consensus 97 cl~l~v~~P~~~~----~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~~ 172 (534)
T 1llf_A 97 CLTINVVRPPGTK----AGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKAE 172 (534)
T ss_dssp CCEEEEEECTTCC----TTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHH
T ss_pred CeEEEEEECCCCC----CCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCccccccc
Confidence 3556678886521 2456899999999876543332 22 11 22222 358999999999643 11 1111111
Q ss_pred hccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-C--------CCcceEEEeecCc
Q 004735 546 LLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F--------RDTFKAGASLYGV 607 (732)
Q Consensus 546 ~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~--------p~~~~a~v~~~~~ 607 (732)
. .+...+.|+.++++|+.++ ...|++||.|+|+|+||++++.++. . ..+|+++|+.+|.
T Consensus 173 ~---~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 173 G---SGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp T---CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred C---CCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 1 2234489999999999774 4579999999999999998877766 3 5679999999984
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-07 Score=101.92 Aligned_cols=242 Identities=11% Similarity=0.096 Sum_probs=143.7
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
..|++++..++... .++.|+++++.+ ++....... ........|+|||++|+....+ ..|.++|
T Consensus 62 ~~~s~~g~~l~~~~-~d~~v~i~d~~~--~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd 125 (420)
T 3vl1_A 62 NTFEKVGSHLYKAR-LDGHDFLFNTII--RDGSKMLKR----ADYTAVDTAKLQMRRFILGTTE---------GDIKVLD 125 (420)
T ss_dssp CEEEEEETTEEEEE-ETTEEEEEECCS--EETTTTSCS----CCEEEEEEECSSSCEEEEEETT---------SCEEEEC
T ss_pred eeeeecCCeEEEEE-cCCcEEEEEecc--cceeeEEec----CCceEEEEEecCCCEEEEEECC---------CCEEEEe
Confidence 45777776665543 467899999986 443333322 1122333589999987665442 4788889
Q ss_pred cCCCCccccEEc-ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 228 LNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 228 ~~~~~~~~~~~l-t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
+.+++ .... ......+...+|||||+.|+..+ ....|.++|+. +++. ...+.+.. ..+..+
T Consensus 126 ~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s--------~d~~i~iwd~~-~~~~--~~~~~~h~----~~v~~~ 187 (420)
T 3vl1_A 126 SNFNL---QREIDQAHVSEITKLKFFPSGEALISSS--------QDMQLKIWSVK-DGSN--PRTLIGHR----ATVTDI 187 (420)
T ss_dssp TTSCE---EEEETTSSSSCEEEEEECTTSSEEEEEE--------TTSEEEEEETT-TCCC--CEEEECCS----SCEEEE
T ss_pred CCCcc---eeeecccccCccEEEEECCCCCEEEEEe--------CCCeEEEEeCC-CCcC--ceEEcCCC----CcEEEE
Confidence 98877 5444 34455677889999999887665 23459999998 6654 44455554 667889
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccc----ccCCCcee------------ecccceeeeeecCCCCE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA----EFSRPLWV------------FGINSYEIIQSHGEKNL 370 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~----~~~~~~w~------------~~~~~~~~~~~~~~~~~ 370 (732)
.|+|||+++++... .+ .|.++|+.+++......... .+....|. .....+.|. .++.
T Consensus 188 ~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~ 260 (420)
T 3vl1_A 188 AIIDRGRNVLSASL-DG--TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG----TYGK 260 (420)
T ss_dssp EEETTTTEEEEEET-TS--CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS----CTTE
T ss_pred EEcCCCCEEEEEcC-CC--cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc----CCCC
Confidence 99999994445444 34 36666877776544332110 00001111 011223343 3344
Q ss_pred EEEEEEECCEEEEEEEECCCCce-EEecc-CCCceEEe-eEeCCE-EEEEEeCCCCCcEEEEEEcCCCc
Q 004735 371 IACSYRQNGRSYLGILDDFGHSL-SLLDI-PFTDIDNI-TLGNDC-LFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 371 l~~~s~~~g~~~ly~~~~~~~~~-~~lt~-~~~~v~~~-~~~~~~-~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
++++...+|.-+|| ++.+++. ..+.. ....+..+ ..+++. +++.++.. ..|+++|+.+++
T Consensus 261 ~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~ 324 (420)
T 3vl1_A 261 YVIAGHVSGVITVH--NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN---GMLAQWDLRSPE 324 (420)
T ss_dssp EEEEEETTSCEEEE--ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT---SEEEEEETTCTT
T ss_pred EEEEEcCCCeEEEE--ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC---CeEEEEEcCCCc
Confidence 55566666665555 6666653 33333 24457666 344444 66655543 478899998764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-07 Score=101.87 Aligned_cols=238 Identities=10% Similarity=0.005 Sum_probs=133.6
Q ss_pred CCEEEEEeCCCCeEEEEeC--CCCCCCc-eecCCCCCCCCeEeeceeecC----CCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 154 GDTVIFSNYKDQRLYKHSI--DSKDSSP-LPITPDYGEPLVSYADGIFDP----RFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~--~~~~~~~-~~lt~~~~~~~~~~~~~~~sp----dG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+..++ +...++.|.++|+ .+ ++. ..+..+ .....++||| ||++++...... ..|.++
T Consensus 190 g~~l~-v~~~d~~V~v~D~~~~t--~~~~~~i~~g-----~~p~~va~sp~~~~dg~~l~v~~~~~--------~~v~v~ 253 (543)
T 1nir_A 190 GRYLL-VIGRDARIDMIDLWAKE--PTKVAEIKIG-----IEARSVESSKFKGYEDRYTIAGAYWP--------PQFAIM 253 (543)
T ss_dssp SCEEE-EEETTSEEEEEETTSSS--CEEEEEEECC-----SEEEEEEECCSTTCTTTEEEEEEEES--------SEEEEE
T ss_pred CCEEE-EECCCCeEEEEECcCCC--CcEEEEEecC-----CCcceEEeCCCcCCCCCEEEEEEccC--------CeEEEE
Confidence 33454 4445589999999 55 332 333322 2335678999 999865554322 578899
Q ss_pred EcCCCCccccEEcccC------------CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecC
Q 004735 227 ALNGQNIQEPKVLVSG------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG 294 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~------------~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~ 294 (732)
|..+++ +...... ........+||||+.+++.. .. ..+|+++|+. +++...+..+..
T Consensus 254 D~~t~~---~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~~------~g~i~vvd~~-~~~~l~~~~i~~ 322 (543)
T 1nir_A 254 DGETLE---PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-KE------TGKVLLVNYK-DIDNLTVTSIGA 322 (543)
T ss_dssp ETTTCC---EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-TT------TTEEEEEECT-TSSSCEEEEEEC
T ss_pred eccccc---cceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-CC------CCeEEEEEec-CCCcceeEEecc
Confidence 998877 4333211 11344567899999776543 32 3569999998 554322223332
Q ss_pred CCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceee-eeecCCCCEEEE
Q 004735 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI-IQSHGEKNLIAC 373 (732)
Q Consensus 295 ~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~l~~ 373 (732)
. ..+....|+|||+.+++++. +...|.++|..+++.....+... ...+.+ ...| .+ +++.+++
T Consensus 323 ~-----~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~-~ph~g~-----g~~~~~p---~~g~~~~ 386 (543)
T 1nir_A 323 A-----PFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGK-TPHPGR-----GANFVHP---KYGPVWS 386 (543)
T ss_dssp C-----SSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSS-SBCCTT-----CEEEEET---TTEEEEE
T ss_pred C-----cCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCC-CCCCCC-----CcccCCC---CCccEEE
Confidence 2 45678899999994445543 22357779999998665443210 001110 0111 11 5566665
Q ss_pred EEE-ECCEEEEEEEECCC-------Cc-eEEeccCCCceEEe-eEeCCEEEEEEeCCCC----CcEEEEEEcCCCcc
Q 004735 374 SYR-QNGRSYLGILDDFG-------HS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVE----PSSVAKVTLDDHKL 436 (732)
Q Consensus 374 ~s~-~~g~~~ly~~~~~~-------~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~----~~~ly~~dl~~~~~ 436 (732)
+.. .++. |-+++.++ .+ ++.|......+..+ ..++++.+++.+..+. ...|.++|+++++.
T Consensus 387 s~~~~d~~--V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 387 TSHLGDGS--ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEBSSSSE--EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred eccCCCce--EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 543 2344 55556655 33 34554432222223 4456666666552221 23699999988764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-07 Score=99.36 Aligned_cols=288 Identities=6% Similarity=-0.091 Sum_probs=153.1
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC----EEEEEeCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD----TVIFSNYK 163 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~----~i~f~~~~ 163 (732)
..+..++|+| +..+......+..++...+|....+ +...+.. .-+.....+..++++ .++++...
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~---~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG---DLKLLRE-------IEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS---SEEEEEE-------EEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC---cccceee-------ecccCcEEEEEEcCCCCCCceEEEecC
Confidence 4567899999 7777666543223566666765432 2211110 011122334444433 56666667
Q ss_pred CCeEEEEeCCCCCC-CceecCCCCCCCCeEeece------eecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 164 DQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADG------IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 164 ~~~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~------~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
++.|.++|+.++ . ....+... ....... +|+|+|+.|+....+ ..|.++|+.+++. ..
T Consensus 89 dg~i~iwd~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~s~~~~~l~~~~~d---------~~i~vwd~~~~~~-~~ 153 (357)
T 3i2n_A 89 GGNLHIWNLEAP-EMPVYSVKGH----KEIINAIDGIGGLGIGEGAPEIVTGSRD---------GTVKVWDPRQKDD-PV 153 (357)
T ss_dssp TSCEEEECTTSC-SSCSEEECCC----SSCEEEEEEESGGGCC-CCCEEEEEETT---------SCEEEECTTSCSS-CS
T ss_pred CCeEEEEeCCCC-CccEEEEEec----ccceEEEeeccccccCCCccEEEEEeCC---------CeEEEEeCCCCCC-cc
Confidence 888999999872 2 34444433 1222222 679999987665442 4688889887540 03
Q ss_pred EEcccCCC----cee----ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 237 KVLVSGSD----FYA----FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 237 ~~lt~~~~----~~~----~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
..+..... ... .+.|||||+.|+... ....|+++|+. +++. .... ... ..+..+.|
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--------~d~~i~i~d~~-~~~~--~~~~-~~~----~~v~~~~~ 217 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY--------DNGDIKLFDLR-NMAL--RWET-NIK----NGVCSLEF 217 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE--------TTSEEEEEETT-TTEE--EEEE-ECS----SCEEEEEE
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEEEEc--------cCCeEEEEECc-cCce--eeec-CCC----CceEEEEc
Confidence 33322111 222 345899999887765 23469999998 6654 2222 222 45678899
Q ss_pred CC---CCcEEEEEeccCCeeeEEEEeccCCeEEE-e-----cccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 309 SS---KGELFFVTDRKNGFWNLHKWIESNNEVLA-I-----YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 309 sp---Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l-----~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
+| +++.+++... .|. |..+|+.+++... + ......+. .+.|.+ ++..++++...+|
T Consensus 218 ~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~---~~~~~l~~~~~dg 282 (357)
T 3i2n_A 218 DRKDISMNKLVATSL-EGK--FHVFDMRTQHPTKGFASVSEKAHKSTVW---------QVRHLP---QNRELFLTAGGAG 282 (357)
T ss_dssp SCSSSSCCEEEEEES-TTE--EEEEEEEEEETTTEEEEEEEECCSSCEE---------EEEEET---TEEEEEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CCe--EEEEeCcCCCcccceeeeccCCCcCCEE---------EEEECC---CCCcEEEEEeCCC
Confidence 99 8885445544 454 4445554443211 1 01111122 234442 5554777888888
Q ss_pred EEEEEEEECCCCc------------------eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 380 RSYLGILDDFGHS------------------LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 380 ~~~ly~~~~~~~~------------------~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
.-.||.+...... +..+......+..+ ..+++.+++++++.+ ..|.++|+.+.
T Consensus 283 ~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d--~~i~iw~~~~~ 354 (357)
T 3i2n_A 283 GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD--QTVRVLIVTKL 354 (357)
T ss_dssp EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT--SEEEEEEECC-
T ss_pred cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC--CcEEEEECCCc
Confidence 8888877643221 22333344556666 344444444333333 35666666543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-07 Score=97.16 Aligned_cols=235 Identities=14% Similarity=0.092 Sum_probs=137.7
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
|..+++.++|+...++.|+++++++ + .+.+... ......+.++|||+.++ ... . ...|+++|..
T Consensus 35 ~d~~g~~l~~~~~~~~~i~~~~~~~--~-~~~~~~~----~~~~~~l~~~~dg~l~v-~~~-~-------~~~i~~~d~~ 98 (296)
T 3e5z_A 35 YVPARSAVIFSDVRQNRTWAWSDDG--Q-LSPEMHP----SHHQNGHCLNKQGHLIA-CSH-G-------LRRLERQREP 98 (296)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTS--C-EEEEESS----CSSEEEEEECTTCCEEE-EET-T-------TTEEEEECST
T ss_pred EeCCCCEEEEEeCCCCEEEEEECCC--C-eEEEECC----CCCcceeeECCCCcEEE-Eec-C-------CCeEEEEcCC
Confidence 3334556889988888999999986 6 5555543 22335678999999533 322 1 1589999998
Q ss_pred CCCccccEEcccCC-----CceeccccCCCCCeEEEEeccC----------CCCCCCccEEEEEEecCCCceeeeEEecC
Q 004735 230 GQNIQEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHH----------PNMPWDKAELWVGYISENGDVYKRVCVAG 294 (732)
Q Consensus 230 ~~~~~~~~~lt~~~-----~~~~~p~~SPDG~~la~~~~~~----------~~~~~~~~~l~v~d~~~~g~~~~~~~~~~ 294 (732)
+++ .+.+.... .......++|||+ |++..... ....-....||.++.+ |+. ..+..
T Consensus 99 ~g~---~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~---~~~~~ 169 (296)
T 3e5z_A 99 GGE---WESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTL---SAPIR 169 (296)
T ss_dssp TCC---EEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCE---EEEEC
T ss_pred CCc---EEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--CCE---EEeec
Confidence 787 65554211 1234578999997 55542100 0000013468888754 554 22222
Q ss_pred CCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEecc-CCeE---EEecccccccCCCceeecccceeeeeecCCCCE
Q 004735 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL 370 (732)
Q Consensus 295 ~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~-~g~~---~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 370 (732)
.. ..+..++|+|||+++ .++. +...|++++++ +|+. +.+... .... ...+.+. .++.
T Consensus 170 ~~----~~~~gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~------p~~i~~d----~~G~ 230 (296)
T 3e5z_A 170 DR----VKPNGLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTV--EPGK------TDGLRVD----AGGL 230 (296)
T ss_dssp CC----SSEEEEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECC--SSSC------CCSEEEB----TTSC
T ss_pred CC----CCCccEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeC--CCCC------CCeEEEC----CCCC
Confidence 22 345678999999955 4443 23467778775 4554 223211 1111 1233443 3344
Q ss_pred EEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe-e-EeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 371 IACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-T-LGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 371 l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~-~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
|+++. . ..|++++.++.....+..+.. +..+ . .++++.+++++.. .||++++++++++
T Consensus 231 l~v~~--~--~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~----~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 231 IWASA--G--DGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST----EFWSIETNVRGLE 290 (296)
T ss_dssp EEEEE--T--TEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT----EEEEEECSCCBCC
T ss_pred EEEEc--C--CeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC----eEEEEEccccccc
Confidence 65555 3 358888998766677776655 5555 2 3455566666542 7999999888764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.8e-07 Score=96.54 Aligned_cols=244 Identities=9% Similarity=0.045 Sum_probs=136.4
Q ss_pred eeEEECCEEEEE--eCCCCeEEEEeCCCCCCCc----eecCCCCCCCCeEeeceeecC-CCCEEEEEEeccCCCCCCcee
Q 004735 149 AFRIFGDTVIFS--NYKDQRLYKHSIDSKDSSP----LPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTT 221 (732)
Q Consensus 149 ~~~~~~~~i~f~--~~~~~~l~~~d~~~~~~~~----~~lt~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~ 221 (732)
.+.++++.+.+. ...++.|.++++... +.. ..+... .......+|+| +++.|+....+ .
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~~h----~~~V~~~~~~p~~~~~l~s~s~d---------g 104 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKT-GRVDKNVPLVCGH----TAPVLDIAWCPHNDNVIASGSED---------C 104 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCC-EECCTTCCCBCCC----SSCEEEEEECTTCTTEEEEEETT---------S
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccC-CCCCCCCceEecC----CCCEEEEEeCCCCCCEEEEEeCC---------C
Confidence 345556644443 455778999998641 211 112222 34567788999 88876555432 4
Q ss_pred EEEEEEcCCCCc-----cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe--cC
Q 004735 222 EIVAIALNGQNI-----QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV--AG 294 (732)
Q Consensus 222 ~l~~~d~~~~~~-----~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~--~~ 294 (732)
.|.++++.++.. .....+......+....|+|||+.+++....+ ..|.++|+. +++. ...+ ..
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-------g~i~iwd~~-~~~~--~~~~~~~~ 174 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-------NVILVWDVG-TGAA--VLTLGPDV 174 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-------SCEEEEETT-TTEE--EEEECTTT
T ss_pred eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-------CEEEEEECC-CCCc--cEEEecCC
Confidence 788888887631 11344444555677889999995444444222 338999998 6654 4444 34
Q ss_pred CCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEE
Q 004735 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC 373 (732)
Q Consensus 295 ~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~ 373 (732)
.. ..+..+.|+|||+++++... .+ .|.++|+.+++..... ..... . ....+.|.+ ++..|+.
T Consensus 175 ~~----~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~--~-----~~~~~~~~~---~~~~l~~ 237 (402)
T 2aq5_A 175 HP----DTIYSVDWSRDGALICTSCR-DK--RVRVIEPRKGTVVAEKDRPHEG--T-----RPVHAVFVS---EGKILTT 237 (402)
T ss_dssp CC----SCEEEEEECTTSSCEEEEET-TS--EEEEEETTTTEEEEEEECSSCS--S-----SCCEEEECS---TTEEEEE
T ss_pred CC----CceEEEEECCCCCEEEEEec-CC--cEEEEeCCCCceeeeeccCCCC--C-----cceEEEEcC---CCcEEEE
Confidence 43 56778999999994444443 34 4777788887654433 21111 0 011223332 5443433
Q ss_pred EEEECCEEEEEEEECCCCce--EEec-cCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 374 SYRQNGRSYLGILDDFGHSL--SLLD-IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 374 ~s~~~g~~~ly~~~~~~~~~--~~lt-~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
.........|.++++.+++. .... .....+..+ ..+++..++++++.++ .|.++|+.+++
T Consensus 238 g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg--~i~i~d~~~~~ 301 (402)
T 2aq5_A 238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS--SIRYFEITSEA 301 (402)
T ss_dssp EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS--CEEEEEECSST
T ss_pred eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC--eEEEEEecCCC
Confidence 32223345677778876542 2222 223345555 4555556665554443 56677777766
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-07 Score=103.42 Aligned_cols=298 Identities=8% Similarity=-0.035 Sum_probs=153.1
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEE----ECCEEEEEeCCCC
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI----FGDTVIFSNYKDQ 165 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~----~~~~i~f~~~~~~ 165 (732)
+..++++| |+.+|.... ++...+|..+..++ +...-++....++ ...|++ ++..++..+..++
T Consensus 181 ~~~v~~spdg~~l~v~~~----d~~V~v~D~~~~t~-~~~~~i~~g~~p~-------~va~sp~~~~dg~~l~v~~~~~~ 248 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGR----DARIDMIDLWAKEP-TKVAEIKIGIEAR-------SVESSKFKGYEDRYTIAGAYWPP 248 (543)
T ss_dssp EEEEEECTTSCEEEEEET----TSEEEEEETTSSSC-EEEEEEECCSEEE-------EEEECCSTTCTTTEEEEEEEESS
T ss_pred cceEEECCCCCEEEEECC----CCeEEEEECcCCCC-cEEEEEecCCCcc-------eEEeCCCcCCCCCEEEEEEccCC
Confidence 45778899 666666542 25544454421332 2111111110111 122333 3446666666678
Q ss_pred eEEEEeCCCCCCCcee-cCCCC--CC-----CCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE
Q 004735 166 RLYKHSIDSKDSSPLP-ITPDY--GE-----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~-lt~~~--~~-----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 237 (732)
.|.++|..+ +++.+ +.... .. +..+.....+||||+++++..... ..|+++|..+++....+
T Consensus 249 ~v~v~D~~t--~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~--------g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 249 QFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET--------GKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp EEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT--------TEEEEEECTTSSSCEEE
T ss_pred eEEEEeccc--cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC--------CeEEEEEecCCCcceeE
Confidence 899999887 55433 22210 00 011445677999999865554322 68999999876510011
Q ss_pred EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee-CCCCc-EE
Q 004735 238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW-SSKGE-LF 315 (732)
Q Consensus 238 ~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w-spDg~-l~ 315 (732)
.+. ...+.....|||||++|+... .. ...|.++|++ +|++. ..+...... .......| +||+. ++
T Consensus 319 ~i~-~~~~~~~~~~spdg~~l~va~-~~------~~~v~v~D~~-tg~l~--~~i~~g~~p--h~g~g~~~~~p~~g~~~ 385 (543)
T 1nir_A 319 SIG-AAPFLHDGGWDSSHRYFMTAA-NN------SNKVAVIDSK-DRRLS--ALVDVGKTP--HPGRGANFVHPKYGPVW 385 (543)
T ss_dssp EEE-CCSSCCCEEECTTSCEEEEEE-GG------GTEEEEEETT-TTEEE--EEEECSSSB--CCTTCEEEEETTTEEEE
T ss_pred Eec-cCcCccCceECCCCCEEEEEe-cC------CCeEEEEECC-CCeEE--EeeccCCCC--CCCCCcccCCCCCccEE
Confidence 222 233455678999999885544 22 3458999998 78763 333321100 00012333 68855 65
Q ss_pred EEEeccCCeeeEEEEeccC-------CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEE--EC--CEEEEE
Q 004735 316 FVTDRKNGFWNLHKWIESN-------NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR--QN--GRSYLG 384 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~-------g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~--~~--g~~~ly 384 (732)
++... +...|.+++.++ .+..+..+.. .... ..+.+.| +++.||..+. .+ ....|.
T Consensus 386 ~s~~~--~d~~V~v~d~~~~~~~~~~~~~v~~l~~~---g~~~-----~~v~~~p---dg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 386 STSHL--GDGSISLIGTDPKNHPQYAWKKVAELQGQ---GGGS-----LFIKTHP---KSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp EEEBS--SSSEEEEEECCTTTCTTTBTSEEEEEECS---CSCC-----CCEECCT---TCCEEEECCTTCSSHHHHTCEE
T ss_pred EeccC--CCceEEEEEeCCCCCchhcCeEEEEEEcC---CCCc-----eEEEcCC---CCCcEEEecCCCCCcccCceEE
Confidence 54432 334566677665 3332222211 0111 1123333 7777765541 11 123677
Q ss_pred EEECCCCceE--Ee--------ccCCCceEEe--eEeCCEEEEEEeC-CCCCcEEEEEEcCCCcc
Q 004735 385 ILDDFGHSLS--LL--------DIPFTDIDNI--TLGNDCLFVEGAS-GVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 385 ~~~~~~~~~~--~l--------t~~~~~v~~~--~~~~~~~~~~~~~-~~~~~~ly~~dl~~~~~ 436 (732)
++|.++++.. .| +.+...+..+ +.+++.+++...+ .+....|.++|.+++++
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 8888877643 33 2222334444 3445555544433 34467899999999875
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-07 Score=96.02 Aligned_cols=227 Identities=10% Similarity=0.025 Sum_probs=138.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCce---ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
.++++...++.|.++++.+ +... .+... ........|+|+++.++.... + ..|.++|+.+++
T Consensus 49 ~~l~tgs~D~~v~vW~~~~--~~~~~~~~l~gh----~~~v~~~~~~~~~~~l~s~s~-D--------~~i~lWd~~~~~ 113 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRD--ERLDLQWSLEGH----QLGVVSVDISHTLPIAASSSL-D--------AHIRLWDLENGK 113 (321)
T ss_dssp CEEEEEETTSCEEEEEEET--TEEEEEEEECCC----SSCEEEEEECSSSSEEEEEET-T--------SEEEEEETTTTE
T ss_pred CEEEEEcCCCCEEEEECCC--CCeeeeeeeccC----CCCEEEEEECCCCCEEEEEeC-C--------CcEEEEECCCCC
Confidence 4566766788777777764 3322 12222 344566789999997554443 2 578899998876
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
. ...+..+........|||||++|+... ....+.++++. +++. ...+.... ..+..+.|+|||
T Consensus 114 ~--~~~~~~~~~~~~~~~~spdg~~l~~g~--------~dg~v~i~~~~-~~~~--~~~~~~~~----~~v~~~~~spdg 176 (321)
T 3ow8_A 114 Q--IKSIDAGPVDAWTLAFSPDSQYLATGT--------HVGKVNIFGVE-SGKK--EYSLDTRG----KFILSIAYSPDG 176 (321)
T ss_dssp E--EEEEECCTTCCCCEEECTTSSEEEEEC--------TTSEEEEEETT-TCSE--EEEEECSS----SCEEEEEECTTS
T ss_pred E--EEEEeCCCccEEEEEECCCCCEEEEEc--------CCCcEEEEEcC-CCce--eEEecCCC----ceEEEEEECCCC
Confidence 1 334444444556789999999988665 23458899988 6654 33344433 456788999999
Q ss_pred cEEEEEeccCCeeeEEEEeccCCeEEEecc-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 313 ~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
++++.... .+ .|.++|+.+++...... ....+.. +.|.+ +++ ++++...++.-.|| ++.++
T Consensus 177 ~~lasg~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~---------l~~sp---d~~-~l~s~s~dg~i~iw--d~~~~ 238 (321)
T 3ow8_A 177 KYLASGAI-DG--IINIFDIATGKLLHTLEGHAMPIRS---------LTFSP---DSQ-LLVTASDDGYIKIY--DVQHA 238 (321)
T ss_dssp SEEEEEET-TS--CEEEEETTTTEEEEEECCCSSCCCE---------EEECT---TSC-EEEEECTTSCEEEE--ETTTC
T ss_pred CEEEEEcC-CC--eEEEEECCCCcEEEEEcccCCceeE---------EEEcC---CCC-EEEEEcCCCeEEEE--ECCCc
Confidence 94444444 34 46667888876544332 2222222 33432 554 44555556665555 66666
Q ss_pred ce-EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 392 SL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 392 ~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+. ..+......+..+ ..+++..++.++.. ..+.++|+.+++
T Consensus 239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D---~~v~iwd~~~~~ 281 (321)
T 3ow8_A 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSD---KSVKVWDVGTRT 281 (321)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTE
T ss_pred ceeEEEcCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCE
Confidence 54 4455555567777 44555565555543 357778887765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-07 Score=94.83 Aligned_cols=236 Identities=12% Similarity=0.139 Sum_probs=137.2
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+..++++ ..+++...++.|.++++.+ ++.. .+... .......+|+|||+.|+....+ ..|.++
T Consensus 28 ~~~~s~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------~~i~vw 92 (312)
T 4ery_A 28 SVKFSPNGEWLASSSADKLIKIWGAYD--GKFEKTISGH----KLGISDVAWSSDSNLLVSASDD---------KTLKIW 92 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEE
T ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCC--cccchhhccC----CCceEEEEEcCCCCEEEEECCC---------CEEEEE
Confidence 3444433 3445555778899999876 4443 34333 3445778899999987665442 578889
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|+.+++. ...+...........|+|||+.|+..+. ...|.++|+. +++. ...+.... ..+..+
T Consensus 93 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~--------d~~i~iwd~~-~~~~--~~~~~~~~----~~v~~~ 155 (312)
T 4ery_A 93 DVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSF--------DESVRIWDVK-TGKC--LKTLPAHS----DPVSAV 155 (312)
T ss_dssp ETTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCCS----SCEEEE
T ss_pred ECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeC--------CCcEEEEECC-CCEE--EEEecCCC----CcEEEE
Confidence 9988761 2334444455667889999998876652 2348999998 6654 44455443 556788
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~ 385 (732)
.|+|||+++++... .+ .|..+|+.+++.. .+.... ..+ ...+.|.+ +++.| ++...++.-.|
T Consensus 156 ~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~---~~~-----~~~~~~~~---~~~~l-~~~~~d~~i~i-- 218 (312)
T 4ery_A 156 HFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDD---NPP-----VSFVKFSP---NGKYI-LAATLDNTLKL-- 218 (312)
T ss_dssp EECTTSSEEEEEET-TS--CEEEEETTTCCEEEEECCSS---CCC-----EEEEEECT---TSSEE-EEEETTTEEEE--
T ss_pred EEcCCCCEEEEEeC-CC--cEEEEECCCCceeeEEeccC---CCc-----eEEEEECC---CCCEE-EEEcCCCeEEE--
Confidence 99999995555544 44 3666777776543 232211 111 11223332 55544 45555665445
Q ss_pred EECCCCceE-EeccCCCc---eE-EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 386 LDDFGHSLS-LLDIPFTD---ID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 386 ~~~~~~~~~-~lt~~~~~---v~-~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+++.+++.. .+...... +. .+..+++.+++.++.. ..|+++|+.+++.
T Consensus 219 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~ 271 (312)
T 4ery_A 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEI 271 (312)
T ss_dssp EETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT---SCEEEEETTTCCE
T ss_pred EECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC---CEEEEEECCCchh
Confidence 477666543 33322211 11 1233445555444322 3588888877763
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-07 Score=93.80 Aligned_cols=238 Identities=8% Similarity=-0.003 Sum_probs=139.6
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+..++++ ..+++...++.|.++|+.+ +. .+.+... ........|+|||++|+....+ ..|.++
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~s~d---------~~i~vw 82 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYET--QVEVRSIQVT----ETPVRAGKFIARKNWIIVGSDD---------FRIRVF 82 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTT--TEEEEEEECC----SSCEEEEEEEGGGTEEEEEETT---------SEEEEE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCC--CceeEEeecc----CCcEEEEEEeCCCCEEEEECCC---------CEEEEE
Confidence 3444433 4555666788899999986 43 3334333 2334567799999986655442 578889
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|+.+++. ...+....+.+...+|+|||+.|+-.+. ...|.++|+. ++.. ....+.+.. ..+..+
T Consensus 83 d~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~sgs~--------D~~v~lWd~~-~~~~-~~~~~~~h~----~~v~~v 146 (304)
T 2ynn_A 83 NYNTGEK--VVDFEAHPDYIRSIAVHPTKPYVLSGSD--------DLTVKLWNWE-NNWA-LEQTFEGHE----HFVMCV 146 (304)
T ss_dssp ETTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEET--------TSCEEEEEGG-GTTE-EEEEECCCC----SCEEEE
T ss_pred ECCCCcE--EEEEeCCCCcEEEEEEcCCCCEEEEECC--------CCeEEEEECC-CCcc-hhhhhcccC----CcEEEE
Confidence 9988761 3344445566778899999998876552 2338888987 5532 133455554 567788
Q ss_pred eeCC-CCcEEEEEeccCCeeeEEEEeccCCeEE-Eeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEE
Q 004735 307 KWSS-KGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (732)
Q Consensus 307 ~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~l 383 (732)
.|+| |++++++... .+. |.++|+.+++.. .+... ........|.+ . .++.++++...++.-+|
T Consensus 147 ~~~p~~~~~l~sgs~-D~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-------~----~~~~~l~s~s~D~~i~i 212 (304)
T 2ynn_A 147 AFNPKDPSTFASGCL-DRT--VKVWSLGQSTPNFTLTTGQERGVNYVDYYP-------L----PDKPYMITASDDLTIKI 212 (304)
T ss_dssp EECTTCTTEEEEEET-TSE--EEEEETTCSSCSEEEECCCTTCEEEEEECC-------S----TTCCEEEEEETTSEEEE
T ss_pred EECCCCCCEEEEEeC-CCe--EEEEECCCCCccceeccCCcCcEEEEEEEE-------c----CCCCEEEEEcCCCeEEE
Confidence 9999 4556555554 454 555566554322 22211 11111111211 1 23445666666776666
Q ss_pred EEEECCCCce-EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 384 GILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 384 y~~~~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
| |+.+++. ..+......+..+ ..+++.+++.++.. ..|.++|+.+++.
T Consensus 213 W--d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~D---g~i~iWd~~~~~~ 262 (304)
T 2ynn_A 213 W--DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED---GTLKIWNSSTYKV 262 (304)
T ss_dssp E--ETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETT---SCEEEEETTTCCE
T ss_pred E--eCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCC---CeEEEEECCCCce
Confidence 6 6666653 4555555566666 44555555555543 3577778877764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.89 E-value=8.3e-07 Score=100.53 Aligned_cols=201 Identities=8% Similarity=-0.022 Sum_probs=118.5
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l 167 (732)
.+..+.++| |+.+.+-. ++...||..... .....+.. |...+.+.+++++ ..+.+...++.|
T Consensus 20 ~~~~~~~spdg~~l~~~~-----~~~v~l~~~~~~--~~~~~~~~---------h~~~v~~~~~spdg~~lasg~~d~~v 83 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-----GTSVYTVPVGSL--TDTEIYTE---------HSHQTTVAKTSPSGYYCASGDVHGNV 83 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-----TTEEEEEETTCS--SCCEEECC---------CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceeEEeeCCCCCEEEeCC-----CCEEEEecCCCc--ccCeEecC---------CCCceEEEEECCCCcEEEEEeCCCCE
Confidence 445788999 88887743 234455554322 22222221 1222334455543 455566678889
Q ss_pred EEEeCCCCCCCce---ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 168 YKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 168 ~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
.++|+.+ +... .+... .......+|||||++|+....+... ...|+++|.. .. ...+.....
T Consensus 84 ~lWd~~~--~~~~~~~~~~~~----~~~v~~v~fs~dg~~l~~~~~~~~~-----~~~v~~wd~~-~~---~~~l~gh~~ 148 (611)
T 1nr0_A 84 RIWDTTQ--TTHILKTTIPVF----SGPVKDISWDSESKRIAAVGEGRER-----FGHVFLFDTG-TS---NGNLTGQAR 148 (611)
T ss_dssp EEEESSS--TTCCEEEEEECS----SSCEEEEEECTTSCEEEEEECCSSC-----SEEEEETTTC-CB---CBCCCCCSS
T ss_pred EEeECCC--CcceeeEeeccc----CCceEEEEECCCCCEEEEEECCCCc-----eeEEEEeeCC-CC---cceecCCCC
Confidence 9999865 3221 22222 2345778899999998776653211 2467777742 22 344554455
Q ss_pred ceeccccCCCCCe-EEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCC
Q 004735 245 FYAFPRMDPRGER-MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 323 (732)
Q Consensus 245 ~~~~p~~SPDG~~-la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g 323 (732)
.+....|+|||+. |+-.+ .+ ..+.++|.. .++. ...+.+.. ..+..++|+|||+++.+... .+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s-~D-------~~v~lwd~~-~~~~--~~~l~~H~----~~V~~v~fspdg~~las~s~-D~ 212 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGS-DD-------NTVAIFEGP-PFKF--KSTFGEHT----KFVHSVRYNPDGSLFASTGG-DG 212 (611)
T ss_dssp CEEEEEECSSSSCEEEEEE-TT-------SCEEEEETT-TBEE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TS
T ss_pred CceEEEECCCCCeEEEEEe-CC-------CeEEEEECC-CCeE--eeeecccc----CceEEEEECCCCCEEEEEEC-CC
Confidence 6778899999985 55444 22 237788876 5544 44556554 66788999999995555544 34
Q ss_pred eeeEEEEeccCCeEEE
Q 004735 324 FWNLHKWIESNNEVLA 339 (732)
Q Consensus 324 ~~~l~~~d~~~g~~~~ 339 (732)
. |.++|..+++...
T Consensus 213 ~--i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 213 T--IVLYNGVDGTKTG 226 (611)
T ss_dssp C--EEEEETTTCCEEE
T ss_pred c--EEEEECCCCcEee
Confidence 4 5556776765543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.7e-08 Score=100.06 Aligned_cols=242 Identities=7% Similarity=-0.030 Sum_probs=140.0
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeEE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l~ 168 (732)
.+..++|+|.+.+. +.. .+|...||....+ +....... ...-|...+.+.+++++ ..+++...++.|.
T Consensus 84 ~v~~~~~s~d~~l~-~~s---~dg~v~lWd~~~~---~~~~~~~~----~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 84 GVADLTWVGERGIL-VAS---DSGAVELWELDEN---ETLIVSKF----CKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152 (344)
T ss_dssp CEEEEEEETTTEEE-EEE---TTSEEEEEEECTT---SSCEEEEE----EEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CEEEEEEeCCCeEE-EEE---CCCEEEEEeccCC---CceeEeec----cccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 35678999743333 332 3577777766433 21111100 00012222344555543 4556666788899
Q ss_pred EEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc--CCCc
Q 004735 169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDF 245 (732)
Q Consensus 169 ~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--~~~~ 245 (732)
++|+.+ ++. +.+... ........|+|+++.++++...+ ..|.++|+.+++. ...+.. ....
T Consensus 153 iwd~~~--~~~~~~~~~h----~~~V~~~~~~~~~~~~l~s~s~D--------~~v~iwd~~~~~~--~~~~~~~~~~~~ 216 (344)
T 4gqb_B 153 VWDLAQ--QVVLSSYRAH----AAQVTCVAASPHKDSVFLSCSED--------NRILLWDTRCPKP--ASQIGCSAPGYL 216 (344)
T ss_dssp EEETTT--TEEEEEECCC----SSCEEEEEECSSCTTEEEEEETT--------SCEEEEETTSSSC--EEECC----CCC
T ss_pred EEECCC--CcEEEEEcCc----CCceEEEEecCCCCCceeeeccc--------cccccccccccce--eeeeecceeecc
Confidence 999987 543 333332 34456678999997655554433 4688889988761 233321 1223
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCe
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 324 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~ 324 (732)
.....|+|++..++..... ...|.++|+. +++. +..+.+.. ..+..++|+|||. ++++... .+
T Consensus 217 ~~~~~~~p~~~~~l~sg~~-------dg~v~~wd~~-~~~~--~~~~~~h~----~~v~~v~fsp~g~~~lasgs~-D~- 280 (344)
T 4gqb_B 217 PTSLAWHPQQSEVFVFGDE-------NGTVSLVDTK-STSC--VLSSAVHS----QCVTGLVFSPHSVPFLASLSE-DC- 280 (344)
T ss_dssp EEEEEECSSCTTEEEEEET-------TSEEEEEESC-C--C--CEEEECCS----SCEEEEEECSSSSCCEEEEET-TS-
T ss_pred ceeeeecCCCCcceEEecc-------CCcEEEEECC-CCcE--EEEEcCCC----CCEEEEEEccCCCeEEEEEeC-CC-
Confidence 4567899976655444312 3458999998 6654 45556654 5677899999996 6655544 34
Q ss_pred eeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 325 ~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
.|.++|..+++...+......+... .|.+ +++.++.+...|+.-.+|.++
T Consensus 281 -~i~vwd~~~~~~~~~~~H~~~V~~v---------~~sp---~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 281 -SLAVLDSSLSELFRSQAHRDFVRDA---------TWSP---LNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp -CEEEECTTCCEEEEECCCSSCEEEE---------EECS---SSTTEEEEEETTSCEEEEECC
T ss_pred -eEEEEECCCCcEEEEcCCCCCEEEE---------EEeC---CCCeEEEEEcCCCeEEEEECC
Confidence 3666788888766554333223333 3433 677777777778877777654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-07 Score=102.92 Aligned_cols=290 Identities=10% Similarity=0.050 Sum_probs=155.5
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE--CCEEEEEeCCCCe
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQR 166 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~--~~~i~f~~~~~~~ 166 (732)
.+.+++|+| +..+..+-. .+|...||..... .....+... -|...+.+..++ ++.++++...++.
T Consensus 121 ~V~~l~~~P~~~~~lasGs---~dg~i~lWd~~~~--~~~~~~~~~-------gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGS---KGGDIMLWNFGIK--DKPTFIKGI-------GAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CEEEEEECSSCTTCEEEEE---TTSCEEEECSSCC--SCCEEECCC-------SSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred CEEEEEEeCCCCCEEEEEe---CCCEEEEEECCCC--CceeEEEcc-------CCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 456889998 665555443 3577777755433 112111111 122334555554 3467778778888
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCce
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~ 246 (732)
|.++|+.+ +..+.+..... .........|+|||+.|+.... . ..|+++|+.+.. ...+......+
T Consensus 189 v~iwd~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~-d--------g~i~~wd~~~~~---~~~~~~h~~~v 253 (435)
T 4e54_B 189 TRLQDFKG--NILRVFASSDT-INIWFCSLDVSASSRMVVTGDN-V--------GNVILLNMDGKE---LWNLRMHKKKV 253 (435)
T ss_dssp EEEEETTS--CEEEEEECCSS-CSCCCCCEEEETTTTEEEEECS-S--------SBEEEEESSSCB---CCCSBCCSSCE
T ss_pred EEEeeccC--CceeEEeccCC-CCccEEEEEECCCCCEEEEEeC-C--------CcEeeeccCcce---eEEEecccceE
Confidence 99999986 54444443211 1233456789999998655432 2 578889998766 55555555567
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCcee-eeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~ 325 (732)
....|+|+++.++.....+ ..|.++|+. .++.. ......+.. ..+..+.|+|||+.+++... .+.
T Consensus 254 ~~v~~~p~~~~~~~s~s~d-------~~v~iwd~~-~~~~~~~~~~~~~h~----~~v~~~~~spdg~~l~s~~~-D~~- 319 (435)
T 4e54_B 254 THVALNPCCDWFLATASVD-------QTVKIWDLR-QVRGKASFLYSLPHR----HPVNAACFSPDGARLLTTDQ-KSE- 319 (435)
T ss_dssp EEEEECTTCSSEEEEEETT-------SBCCEEETT-TCCSSSCCSBCCBCS----SCEEECCBCTTSSEEEEEES-SSC-
T ss_pred EeeeecCCCceEEEEecCc-------ceeeEEecc-cccccceEEEeeecc----ccccceeECCCCCeeEEEcC-CCE-
Confidence 7889999998776554222 237788887 44321 111112222 45677899999995445444 444
Q ss_pred eEEEEeccCCeE-EEecccccc------cCCCceeecccceeeeeecCCCCEEEEEEEECC---------EEEEEEEECC
Q 004735 326 NLHKWIESNNEV-LAIYSLDAE------FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---------RSYLGILDDF 389 (732)
Q Consensus 326 ~l~~~d~~~g~~-~~l~~~~~~------~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g---------~~~ly~~~~~ 389 (732)
|.++|..+++. ..+...... .....|.+ ++..++.....++ ...|.+++..
T Consensus 320 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~ 386 (435)
T 4e54_B 320 -IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP------------RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN 386 (435)
T ss_dssp -EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS------------SSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred -EEEEECCCCccceEEecccccccccceeEEEEEcC------------CCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence 55567666543 222211110 01122332 3334443332221 1236667877
Q ss_pred CCceE-EeccC-CCceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 390 GHSLS-LLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 390 ~~~~~-~lt~~-~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
+++.. .+..+ ...|..+ ..+++.+++.+ +. ..|.+++++.++.+
T Consensus 387 ~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg-~d---~~i~iW~~~~gk~r 434 (435)
T 4e54_B 387 SGKMMCQLYDPESSGISSLNEFNPMGDTLASA-MG---YHILIWSQQEARTR 434 (435)
T ss_dssp SCCEEEEECCSSCCCCCCEEEECTTSSCEEEE-CS---SEEEECCCC-----
T ss_pred CCcEEEEEeCCCCCcEEEEEEECCCCCEEEEE-cC---CcEEEEECCcCeee
Confidence 77654 34333 2334433 23455555443 22 36888888887643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-08 Score=102.33 Aligned_cols=200 Identities=11% Similarity=0.009 Sum_probs=118.9
Q ss_pred CceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 147 ~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+.+.+++++ ..+++...++.|.++|+.+ ++. ..+... .......+|+|+++.++++.... ..|.
T Consensus 142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~~~~~~~~~h----~~~v~~v~~s~~~~~~~~s~~~d--------g~v~ 207 (357)
T 4g56_B 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--KAVLKSYNAH----SSEVNCVAACPGKDTIFLSCGED--------GRIL 207 (357)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTT--TEEEEEECCC----SSCEEEEEECTTCSSCEEEEETT--------SCEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEEEEcCC----CCCEEEEEEccCCCceeeeeccC--------CceE
Confidence 344555543 4555666778899999987 443 333332 33456678999987555544422 4688
Q ss_pred EEEcCCCCccccEE-cc--cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 225 AIALNGQNIQEPKV-LV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 225 ~~d~~~~~~~~~~~-lt--~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
++|+.+++ ... +. ..........||||+..++..... ...|.++|+. +++. ...+.+.. .
T Consensus 208 ~wd~~~~~---~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~-------d~~i~~wd~~-~~~~--~~~~~~~~----~ 270 (357)
T 4g56_B 208 LWDTRKPK---PATRIDFCASDTIPTSVTWHPEKDDTFACGDE-------TGNVSLVNIK-NPDS--AQTSAVHS----Q 270 (357)
T ss_dssp ECCTTSSS---CBCBCCCTTCCSCEEEEEECTTSTTEEEEEES-------SSCEEEEESS-CGGG--CEEECCCS----S
T ss_pred EEECCCCc---eeeeeeeccccccccchhhhhcccceEEEeec-------ccceeEEECC-CCcE--eEEEeccc----e
Confidence 88988776 322 22 223345667899997665444422 2338999998 6654 45555554 5
Q ss_pred cCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 302 ~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
.+..++|+|||+ ++.+... .+ .|.++|.++++..........+....|+| .++.++++...++.
T Consensus 271 ~v~~l~~sp~~~~~lasgs~-D~--~i~iwd~~~~~~~~~~~H~~~V~~vafsP------------~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISE-DC--TVAVLDADFSEVFRDLSHRDFVTGVAWSP------------LDHSKFTTVGWDHK 335 (357)
T ss_dssp CEEEEEECSSSSCCEEEEET-TS--CEEEECTTSCEEEEECCCSSCEEEEEECS------------SSTTEEEEEETTSC
T ss_pred eEEEEEEcCCCCCEEEEEeC-CC--EEEEEECCCCcEeEECCCCCCEEEEEEeC------------CCCCEEEEEcCCCe
Confidence 677889999986 6555544 34 46667888887665543332233333432 34445566667888
Q ss_pred EEEEEEECCCCc
Q 004735 381 SYLGILDDFGHS 392 (732)
Q Consensus 381 ~~ly~~~~~~~~ 392 (732)
-.||.+...+..
T Consensus 336 v~iW~~~~~~~~ 347 (357)
T 4g56_B 336 VLHHHLPSEGRT 347 (357)
T ss_dssp EEEEECC-----
T ss_pred EEEEECCCCCcc
Confidence 888866544433
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-06 Score=92.84 Aligned_cols=202 Identities=9% Similarity=0.035 Sum_probs=124.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-C-EEEEEeCCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-D-TVIFSNYKDQ 165 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-~-~i~f~~~~~~ 165 (732)
..+.++.|+| +..+..+-.. ++...+|..... +........ -+...+.+..+++ + .++++...++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~---~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSK---GGDIILWDYDVQ---NKTSFIQGM------GPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEB---TSCEEEEETTST---TCEEEECCC------STTCBEEEEEEETTEEEEEEEEETTT
T ss_pred CCEEEEEECCCCCCEEEEEcC---CCeEEEEeCCCc---ccceeeecC------CcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 4567899999 6455555442 467677766433 222222110 1222344556665 2 6677777788
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
.|.++|+.+ ...+.+..... .........|+|||+.|+....+ ..|+++|+.+.. ...+......
T Consensus 142 ~i~iwd~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~---~~~~~~h~~~ 206 (383)
T 3ei3_B 142 ATTLRDFSG--SVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST---------GRLLLLGLDGHE---IFKEKLHKAK 206 (383)
T ss_dssp EEEEEETTS--CEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT---------SEEEEEETTSCE---EEEEECSSSC
T ss_pred EEEEEECCC--CceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC---------CCEEEEECCCCE---EEEeccCCCc
Confidence 999999986 55555544311 12345677899999986655442 588999996554 5566555566
Q ss_pred eeccccCCCCC-eEEEEeccCCCCCCCccEEEEEEecCC----CceeeeEEecCCCCCccccCcCceeCC-CCcEEEEEe
Q 004735 246 YAFPRMDPRGE-RMAWIEWHHPNMPWDKAELWVGYISEN----GDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTD 319 (732)
Q Consensus 246 ~~~p~~SPDG~-~la~~~~~~~~~~~~~~~l~v~d~~~~----g~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~l~~~~~ 319 (732)
+....|+|||+ .|+..+ . ...|.++|+. + +.. ...+. .. ..+..+.|+| ||+++++..
T Consensus 207 v~~~~~~~~~~~~l~s~~-~-------d~~i~iwd~~-~~~~~~~~--~~~~~-~~----~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 207 VTHAEFNPRCDWLMATSS-V-------DATVKLWDLR-NIKDKNSY--IAEMP-HE----KPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp EEEEEECSSCTTEEEEEE-T-------TSEEEEEEGG-GCCSTTCE--EEEEE-CS----SCEEEEEECTTTSCEEEEEE
T ss_pred EEEEEECCCCCCEEEEEe-C-------CCEEEEEeCC-CCCcccce--EEEec-CC----CceEEEEEcCCCCCEEEEEc
Confidence 77889999999 454443 2 3458999998 4 333 33332 33 5678899999 998444444
Q ss_pred ccCCeeeEEEEeccCCe
Q 004735 320 RKNGFWNLHKWIESNNE 336 (732)
Q Consensus 320 ~~~g~~~l~~~d~~~g~ 336 (732)
. .+ .|.++|+.+++
T Consensus 271 ~-d~--~i~iwd~~~~~ 284 (383)
T 3ei3_B 271 Q-RN--EIRVYSSYDWS 284 (383)
T ss_dssp S-SS--EEEEEETTBTT
T ss_pred C-CC--cEEEEECCCCc
Confidence 4 34 46666776654
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-09 Score=120.57 Aligned_cols=128 Identities=18% Similarity=0.157 Sum_probs=85.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHH-CCCEEEEEcCCC-CCCCChhhHHhhc
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYGG-STGYGREFRERLL 547 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~-~G~~v~~~d~rG-~~g~g~~~~~~~~ 547 (732)
|...+ .+|.|... ..++.|+||++|||++....... ......|++ .|++|+.+|||. ..|++... ...
T Consensus 95 dcl~l--~v~~P~~~-----~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~--~~~ 165 (543)
T 2ha2_A 95 DCLYL--NVWTPYPR-----PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALP--GSR 165 (543)
T ss_dssp CCCEE--EEEEESSC-----CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCS
T ss_pred cCCeE--EEeecCCC-----CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCC--CCC
Confidence 55444 55667541 14557999999998754433321 122345555 799999999993 22222110 000
Q ss_pred cCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCc
Q 004735 548 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGV 607 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~ 607 (732)
...+...+.|+.++++|+.++ ...|++||.|+|+|+||++++.++.. +.+|+++|+.+|.
T Consensus 166 ~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 231 (543)
T 2ha2_A 166 EAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGT 231 (543)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCC
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCC
Confidence 111223478999999999875 34799999999999999999888763 5789999999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.8e-07 Score=92.08 Aligned_cols=198 Identities=10% Similarity=-0.042 Sum_probs=117.1
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC--cccCCCCCcccccccccCCceeEEECC-EEEEEeCCCC
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~ 165 (732)
....++|+| |+.++--. .++...||....+ .. ...... -|...+.+..++++ ..+++...++
T Consensus 18 ~v~~l~~sp~g~~las~~----~D~~i~iw~~~~~---~~~~~~~~~~-------~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCG----GDRRIRIWGTEGD---SWICKSVLSE-------GHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEECTTSSCEEEEE----TTSCEEEEEEETT---EEEEEEEECS-------SCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCEEEEEc----CCCeEEEEEcCCC---cceeeeeecc-------ccCCcEEEEEECCCCCEEEEEECCC
Confidence 345789999 77665433 3577777765332 11 111111 12222344555543 4555656677
Q ss_pred eEEEEeCCCCCCCce---ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc-ccEEccc
Q 004735 166 RLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-EPKVLVS 241 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~lt~ 241 (732)
.+.++++.. +..+ .+... .......+|+|||++|+....+ ..|.++|+.++... ....+..
T Consensus 84 ~v~iw~~~~--~~~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 84 TTCIWKKNQ--DDFECVTTLEGH----ENEVKSVAWAPSGNLLATCSRD---------KSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp CEEEEEECC--C-EEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEEECTTSCEEEEEEECC
T ss_pred cEEEEEccC--CCeEEEEEccCC----CCCceEEEEeCCCCEEEEEECC---------CeEEEEECCCCCCeEEEEEecC
Confidence 788888775 4322 33332 3446778899999987665442 46777788765410 0122333
Q ss_pred CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 242 ~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
....+....|+|||+.|+..+.+ ..|.++|+. +++......+.+.. ..+..+.|+|||+++++...
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d--------~~i~~w~~~-~~~~~~~~~~~~h~----~~v~~l~~sp~g~~l~s~s~- 214 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYD--------DTVKLYREE-EDDWVCCATLEGHE----STVWSLAFDPSGQRLASCSD- 214 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETT--------SCEEEEEEE-TTEEEEEEEECCCS----SCEEEEEECTTSSEEEEEET-
T ss_pred cCCCeEEEEECCCCCEEEEEeCC--------CcEEEEEec-CCCEEEEEEecCCC----CceEEEEECCCCCEEEEEeC-
Confidence 34456678999999998876632 237888887 56543344455554 56788999999995555554
Q ss_pred CCeeeEEEE
Q 004735 322 NGFWNLHKW 330 (732)
Q Consensus 322 ~g~~~l~~~ 330 (732)
.+.-+||..
T Consensus 215 D~~v~iW~~ 223 (345)
T 3fm0_A 215 DRTVRIWRQ 223 (345)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEecc
Confidence 566667754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-06 Score=92.33 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=94.4
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+..++++ ..+++...++.|.++|+.+ ++.. .+... ........|+|||++|+....+ ..|.++
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~s~d---------~~v~iw 192 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIEN--RKIVMILQGH----EQDIYSLDYFPSGDKLVSGSGD---------RTVRIW 192 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEccC----CCCEEEEEEcCCCCEEEEecCC---------CcEEEE
Confidence 4455533 4555656778899999987 5443 33333 3445678899999987655442 578888
Q ss_pred EcCCCCccccEEcccCCCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe-------cCCCCC
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-------AGFDPT 298 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~-------~~~~~~ 298 (732)
|+.+++ ...............|+| ||+.|+..+.+ ..|.++|+. +|+. ...+ .+..
T Consensus 193 d~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d--------~~v~iwd~~-~~~~--~~~~~~~~~~~~~h~-- 256 (393)
T 1erj_A 193 DLRTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSLD--------RAVRVWDSE-TGFL--VERLDSENESGTGHK-- 256 (393)
T ss_dssp ETTTTE---EEEEEECSSCEEEEEECSTTCCEEEEEETT--------SCEEEEETT-TCCE--EEEEC------CCCS--
T ss_pred ECCCCe---eEEEEEcCCCcEEEEEECCCCCEEEEEcCC--------CcEEEEECC-CCcE--EEeecccccCCCCCC--
Confidence 998876 443333344456678999 89988766522 338888987 6654 2222 2222
Q ss_pred ccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC
Q 004735 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 299 ~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
..+..+.|+|||+++++... .+.-.| +|+.+
T Consensus 257 --~~v~~v~~~~~g~~l~s~s~-d~~v~~--wd~~~ 287 (393)
T 1erj_A 257 --DSVYSVVFTRDGQSVVSGSL-DRSVKL--WNLQN 287 (393)
T ss_dssp --SCEEEEEECTTSSEEEEEET-TSEEEE--EEC--
T ss_pred --CCEEEEEECCCCCEEEEEeC-CCEEEE--EECCC
Confidence 45677899999995555554 455444 45443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=4.9e-07 Score=94.32 Aligned_cols=258 Identities=10% Similarity=0.052 Sum_probs=134.0
Q ss_pred EECCEEEEEeCC----CCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccC-CCCCCceeEEEE
Q 004735 152 IFGDTVIFSNYK----DQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR-QDALNSTTEIVA 225 (732)
Q Consensus 152 ~~~~~i~f~~~~----~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~-~~~~~~~~~l~~ 225 (732)
+++.+++..+.. ++.|+++|.++ ++. ..+..+. ... +.+||||++++....-.. .......+.|.+
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~-----~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGF-----LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECS-----SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCC-----CCc-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 345577777664 56899999987 443 3333321 113 789999998655432100 000000257999
Q ss_pred EEcCCCCccccEEcccCC-------CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecC----
Q 004735 226 IALNGQNIQEPKVLVSGS-------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG---- 294 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~-------~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~---- 294 (732)
+|..+++. ...+.-+. ..-....+||||++|+...... ...|.++|+. ++++.....+.+
T Consensus 114 iD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~------~~~VsVID~~-t~~vv~tI~v~g~~~~ 184 (386)
T 3sjl_D 114 FDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP------APAVGVVDLE-GKAFKRMLDVPDCYHI 184 (386)
T ss_dssp ECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS------SCEEEEEETT-TTEEEEEEECCSEEEE
T ss_pred EECCCCeE--EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC------CCeEEEEECC-CCcEEEEEECCCccee
Confidence 99999872 22332111 1233468999999986554221 2335556655 443311110000
Q ss_pred -----------------------------------CCCCccccCcCceeC-CCCcEEEEEeccCCeeeEEEEeccCCeEE
Q 004735 295 -----------------------------------FDPTIVESPTEPKWS-SKGELFFVTDRKNGFWNLHKWIESNNEVL 338 (732)
Q Consensus 295 -----------------------------------~~~~~~~~~~~~~ws-pDg~l~~~~~~~~g~~~l~~~d~~~g~~~ 338 (732)
.+++.......+.|. +||+++|.+.. | ++|.+|..++..+
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~--g--~V~v~d~~~~~~~ 260 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT--G--KIHQIDLSSGDAK 260 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTT--S--EEEEEECTTSSCE
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCC--C--EEEEEECCCCcce
Confidence 000000001123442 56665555442 2 4677776655443
Q ss_pred Eecccc---cccCCCceeecc-cceeeeeecCCCCEEEEEEEEC-------CEEEEEEEECCCCce-EEeccCCCceEEe
Q 004735 339 AIYSLD---AEFSRPLWVFGI-NSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSL-SLLDIPFTDIDNI 406 (732)
Q Consensus 339 ~l~~~~---~~~~~~~w~~~~-~~~~~~~~~~~~~~l~~~s~~~-------g~~~ly~~~~~~~~~-~~lt~~~~~v~~~ 406 (732)
.+.+.. .....+.|.++. ..+.+.+ +++++|+..... ...+|+++|++++++ +.+..+. ....+
T Consensus 261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~---~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~l 336 (386)
T 3sjl_D 261 FLPAVEALTEAERADGWRPGGWQQVAYHR---ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSI 336 (386)
T ss_dssp ECCCEESSCHHHHHTTEEECSSSCEEEET---TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEE
T ss_pred eecceeccccccccccccCCCcceeeECC---CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceE
Confidence 322110 000124566533 3345543 778888876532 357899999999875 4554443 23334
Q ss_pred --eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 407 --TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 407 --~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+.+++..+|.... ....|.++|..++++
T Consensus 337 avs~D~~~~ly~tn~--~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 337 NVSQDEKPLLYALST--GDKTLYIHDAESGEE 366 (386)
T ss_dssp EECSSSSCEEEEEET--TTTEEEEEETTTCCE
T ss_pred EECCCCCeEEEEEcC--CCCeEEEEECCCCcE
Confidence 3444446665543 235799999998874
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.2e-09 Score=114.32 Aligned_cols=111 Identities=10% Similarity=-0.067 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCCCccCCcccH-HHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
...|+||++||++... ...|.. ++..|.++ ||.|+++|+||.+... +..... .. ....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~--~~~~~~-~~-~~~~~dl~~li~~L~~~~g 142 (452)
T 1bu8_A 68 LDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTE--YTQASY-NT-RVVGAEIAFLVQVLSTEMG 142 (452)
T ss_dssp TTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSC--HHHHHH-HH-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCc--hhHhHh-hH-HHHHHHHHHHHHHHHHhcC
Confidence 4468999999985443 234444 55666654 9999999999765433 111110 00 0225678888888876545
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
++.+++.|+|||+||.+|+.++. +|++++.++++.|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 66789999999999999999998 999999999998764
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-08 Score=99.42 Aligned_cols=185 Identities=12% Similarity=0.053 Sum_probs=103.0
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.|+++||.++. ...|..+...|.. +.|+.+|++|.+ . ..+|+.+.++.+.. .+
T Consensus 17 ~~~l~~~hg~~~~--~~~~~~~~~~l~~--~~v~~~d~~g~~---~-------------~~~~~~~~i~~~~~-----~~ 71 (230)
T 1jmk_C 17 EQIIFAFPPVLGY--GLMYQNLSSRLPS--YKLCAFDFIEEE---D-------------RLDRYADLIQKLQP-----EG 71 (230)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHCTT--EEEEEECCCCST---T-------------HHHHHHHHHHHHCC-----SS
T ss_pred CCCEEEECCCCCc--hHHHHHHHHhcCC--CeEEEecCCCHH---H-------------HHHHHHHHHHHhCC-----CC
Confidence 4789999997433 3556666666654 999999998632 1 13456666655521 35
Q ss_pred cEEEEEcChHHHHHHHHHh-C---CCcceEEEeecCcCCH--HHHHhh-cchhhhhhhhh------hcC--Chh------
Q 004735 575 RLCITGGSAGGYTTLAALA-F---RDTFKAGASLYGVADL--SMLRAE-THKFESRYIDN------LVG--SEK------ 633 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~---p~~~~a~v~~~~~~d~--~~~~~~-~~~~~~~~~~~------~~~--~~~------ 633 (732)
++.++|||+||.+++.++. . ++.++.+++.++.... ..+... .......++.. ... -.+
T Consensus 72 ~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (230)
T 1jmk_C 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQKT 151 (230)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGSHHHHHHHHHHH
T ss_pred CeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCCCCcccccccccHHHHHHHHHhcChhhhhhhhHHHHHHHHHHH
Confidence 7999999999999998886 3 4678888887754211 000000 00000000000 000 000
Q ss_pred -hhhhcCc-cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHh-CCCCEEEEEeCCCCcc-CCCcccHHHHHHHHHHH
Q 004735 634 -DYYEKSP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE-NGLPVALVEYEGEQHG-FRKAENIKFTLEQQMVF 709 (732)
Q Consensus 634 -~~~~~sp-~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~-~g~~~~~~~~~~~gH~-~~~~~~~~~~~~~~~~f 709 (732)
.+..+.. .....++++|+++++|++|..++. .. ..+.+ ...+++++.+++ +|. +...++.....+.+.+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~-~~----~~w~~~~~~~~~~~~i~g-~H~~~~~~~~~~~~~~~i~~~ 225 (230)
T 1jmk_C 152 HAFYSYYVNLISTGQVKADIDLLTSGADFDIPE-WL----ASWEEATTGAYRMKRGFG-THAEMLQGETLDRNAGILLEF 225 (230)
T ss_dssp HHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCT-TE----ECSGGGBSSCEEEEECSS-CGGGTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccEEEEEeCCCCCCcc-cc----chHHHhcCCCeEEEEecC-ChHHHcCcHhHHHHHHHHHHH
Confidence 0111100 123467889999999999998762 21 11222 123578999997 883 33334444444444444
Q ss_pred H
Q 004735 710 F 710 (732)
Q Consensus 710 l 710 (732)
+
T Consensus 226 l 226 (230)
T 1jmk_C 226 L 226 (230)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=8.5e-07 Score=93.19 Aligned_cols=243 Identities=12% Similarity=0.035 Sum_probs=124.2
Q ss_pred CCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCC-CCCCceeEEEEEEcCCCCccccEEccc
Q 004735 164 DQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
++.|+++|.++ ++.. .+..+ ..- .+.+||||++++...+.... ........|.++|+++++. ...+.-
T Consensus 30 d~~v~v~D~~t--~~~~~~i~~g-----~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--~~~i~~ 99 (361)
T 2oiz_A 30 ESRVHVYDYTN--GKFLGMVPTA-----FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF--EKEISL 99 (361)
T ss_dssp GCEEEEEETTT--CCEEEEEECC-----EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE--EEEEEE
T ss_pred cCeEEEEECCC--CeEEEEecCC-----CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE--EEEEEc
Confidence 45899999887 5543 23222 223 67899999996655431100 0000125799999988761 233321
Q ss_pred C------CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE-ecCCC-------CCccccCcCce
Q 004735 242 G------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFD-------PTIVESPTEPK 307 (732)
Q Consensus 242 ~------~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~-~~~~~-------~~~~~~~~~~~ 307 (732)
. ........+||||++|+...... ...|.++|++ +++. +.. +.... +. .......
T Consensus 100 ~~~~~~~g~~p~~i~~spdg~~l~v~n~~~------~~~v~v~d~~-~~~~--~~~~i~~~~~~~v~~~p~--~~~~~~~ 168 (361)
T 2oiz_A 100 PPKRVQGLNYDGLFRQTTDGKFIVLQNASP------ATSIGIVDVA-KGDY--VEDVTAAAGCWSVIPQPN--RPRSFMT 168 (361)
T ss_dssp CTTBCCBCCCGGGEEECTTSSEEEEEEESS------SEEEEEEETT-TTEE--EEEEGGGTTEEEEEECTT--SSSEEEE
T ss_pred CccccccCCCcceEEECCCCCEEEEECCCC------CCeEEEEECC-CCcE--EEEEecCCCcceeEEcCC--CCeeEEE
Confidence 1 12234568999999886554221 3458888887 5654 222 11110 00 0011234
Q ss_pred eCCCCc-EEEEEeccCCe-----------------------------------eeEEEEeccCCeEEEecc---cccccC
Q 004735 308 WSSKGE-LFFVTDRKNGF-----------------------------------WNLHKWIESNNEVLAIYS---LDAEFS 348 (732)
Q Consensus 308 wspDg~-l~~~~~~~~g~-----------------------------------~~l~~~d~~~g~~~~l~~---~~~~~~ 348 (732)
.++||+ +++.... .+. ..++.+|..+++.+.+.. ......
T Consensus 169 ~~~dg~~~~v~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 169 ICGDGGLLTINLGE-DGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp EETTSSEEEEEECT-TSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred ECCCCcEEEEEECC-CCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 455555 3222211 111 124455544333221110 000001
Q ss_pred CCceeec-ccceeeeeecCCCCEEEEEEEECC--------EEEEEEEECCCCceE-EeccCCCceEEe-eEeCCEEEEEE
Q 004735 349 RPLWVFG-INSYEIIQSHGEKNLIACSYRQNG--------RSYLGILDDFGHSLS-LLDIPFTDIDNI-TLGNDCLFVEG 417 (732)
Q Consensus 349 ~~~w~~~-~~~~~~~~~~~~~~~l~~~s~~~g--------~~~ly~~~~~~~~~~-~lt~~~~~v~~~-~~~~~~~~~~~ 417 (732)
...|.+. ...+.|.+ +++++|.....++ ...|+++|+++++.. .+..+. ...+ ..++++++|.+
T Consensus 248 ~~~~~p~g~~~~a~~~---dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~ 322 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHR---ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTL 322 (361)
T ss_dssp HTTCEECCSSCEEEET---TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEE
T ss_pred ccccccCCeeEEEEec---CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEe
Confidence 1223332 22355654 7788887665222 347999999988754 444444 5555 44455555554
Q ss_pred eCCCCCcEEEEEEcCCCcce
Q 004735 418 ASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 418 ~~~~~~~~ly~~dl~~~~~~ 437 (732)
.. ..|.++|+++++++
T Consensus 323 n~----~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 323 DG----GNVNVYDISQPEPK 338 (361)
T ss_dssp CS----SCEEEEECSSSSCE
T ss_pred CC----CeEEEEECCCCcce
Confidence 42 67999999998443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-07 Score=94.84 Aligned_cols=236 Identities=11% Similarity=-0.038 Sum_probs=138.2
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
...++++++++....++.|.++|+++ ++. +.+... ......+++||| ++ |+.... ...|+++|
T Consensus 48 ~i~~~~~~lyv~~~~~~~v~viD~~t--~~~~~~i~~~-----~~p~~i~~~~~g-~l-yv~~~~-------~~~v~~iD 111 (328)
T 3dsm_A 48 SMVIRDGIGWIVVNNSHVIFAIDINT--FKEVGRITGF-----TSPRYIHFLSDE-KA-YVTQIW-------DYRIFIIN 111 (328)
T ss_dssp EEEEETTEEEEEEGGGTEEEEEETTT--CCEEEEEECC-----SSEEEEEEEETT-EE-EEEEBS-------CSEEEEEE
T ss_pred EEEEECCEEEEEEcCCCEEEEEECcc--cEEEEEcCCC-----CCCcEEEEeCCC-eE-EEEECC-------CCeEEEEE
Confidence 34567889998888778999999987 554 455432 122556788998 54 444321 26899999
Q ss_pred cCCCCccccE-EcccCC--C---ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 228 LNGQNIQEPK-VLVSGS--D---FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 228 ~~~~~~~~~~-~lt~~~--~---~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
+++++ +. .+..+. . ......+ ++++|+...+. ....|.++|++ +++... .+... .
T Consensus 112 ~~t~~---~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~------~~~~v~viD~~-t~~~~~--~i~~g-----~ 172 (328)
T 3dsm_A 112 PKTYE---ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS------YQNRILKIDTE-TDKVVD--ELTIG-----I 172 (328)
T ss_dssp TTTTE---EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT------TCCEEEEEETT-TTEEEE--EEECS-----S
T ss_pred CCCCe---EEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC------CCCEEEEEECC-CCeEEE--EEEcC-----C
Confidence 99887 43 333222 0 2223445 67777655421 14569999998 776532 22222 3
Q ss_pred cCcCceeCCCCcEEEEEeccCC-------eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEE
Q 004735 302 SPTEPKWSSKGELFFVTDRKNG-------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g-------~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 374 (732)
.+..+.++|||++++......+ ...|+++|+++++.......... .. ...+.+.+ +++.+|++
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-~~------p~~la~~~---d~~~lyv~ 242 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-DW------PSEVQLNG---TRDTLYWI 242 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT-CC------CEEEEECT---TSCEEEEE
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC-CC------ceeEEEec---CCCEEEEE
Confidence 3567889999997666543100 25799999998876533221100 01 12334443 67777765
Q ss_pred EEECCEEEEEEEECCCCceEE---eccCCCceEEe-eEe-CCEEEEEEeC-CCCCcEEEEEEcCCCc
Q 004735 375 YRQNGRSYLGILDDFGHSLSL---LDIPFTDIDNI-TLG-NDCLFVEGAS-GVEPSSVAKVTLDDHK 435 (732)
Q Consensus 375 s~~~g~~~ly~~~~~~~~~~~---lt~~~~~v~~~-~~~-~~~~~~~~~~-~~~~~~ly~~dl~~~~ 435 (732)
.. .||++|.+++++.. ++........+ .++ ++.+++..+. ......|+++|.+ ++
T Consensus 243 ~~-----~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 243 NN-----DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp SS-----SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred cc-----EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 32 79999998887532 11112334455 333 4555444311 1234569999987 54
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.4e-09 Score=112.55 Aligned_cols=111 Identities=10% Similarity=-0.011 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCCCccCCcccH-HHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
...|+||++||++... ...|.. ++..|.++ ||.|+++|++|.+... +..... .. ....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~--~~~~~~-~~-~~~~~dl~~~i~~L~~~~g 142 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAE--YTQAVQ-NI-RIVGAETAYLIQQLLTELS 142 (452)
T ss_dssp TTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSC--HHHHHH-HH-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccc--cHHHHH-hH-HHHHHHHHHHHHHHHHhcC
Confidence 3468999999985443 234444 55667665 9999999999765432 111110 00 1125677888888876544
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
++.+++.|+|||+||.+++.++. +|++++.++++.|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 143 YNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 56789999999999999999998 999999999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-06 Score=92.34 Aligned_cols=156 Identities=12% Similarity=0.045 Sum_probs=93.2
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCC------ceecCCCCCC-CCeEeeceeec----CCCCE-EEEEEeccCCCCCCceeEE
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSS------PLPITPDYGE-PLVSYADGIFD----PRFNR-YVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~------~~~lt~~~~~-~~~~~~~~~~s----pdG~~-l~~~~~~~~~~~~~~~~~l 223 (732)
..+++...++.|+++++.+ +. .+.+...... .........|+ |+|+. |+....+ ..|
T Consensus 82 ~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d---------g~i 150 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITR--EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK---------GTT 150 (397)
T ss_dssp EEEEEEETTSCEEEEEEEE--CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT---------SCE
T ss_pred cEEEEEcCCCCEEEEEccC--CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC---------CcE
Confidence 5666666778899999886 44 3444432100 01345677899 99998 6555442 467
Q ss_pred EEEEcCC------CCccccE-----Ecc-------cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc
Q 004735 224 VAIALNG------QNIQEPK-----VLV-------SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD 285 (732)
Q Consensus 224 ~~~d~~~------~~~~~~~-----~lt-------~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~ 285 (732)
+++|+.+ ++. .. .+. ..........|+||| .|+... ....|.++|+. +++
T Consensus 151 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~--------~dg~i~i~d~~-~~~ 218 (397)
T 1sq9_A 151 YIWKFHPFADESNSLT--LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF--------NNGTVQISELS-TLR 218 (397)
T ss_dssp EEEEEESSSSHHHHTT--TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC--------TTSEEEEEETT-TTE
T ss_pred EEEeCCccccccccce--eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe--------CCCcEEEEECC-CCc
Confidence 7778776 431 22 331 123445678899999 666544 23459999998 665
Q ss_pred eeeeEEecC---C---CCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEe
Q 004735 286 VYKRVCVAG---F---DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 286 ~~~~~~~~~---~---~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l 340 (732)
. +..+.. . . ..+..+.|+|||+++++.....+...|.++|+.+++....
T Consensus 219 ~--~~~~~~~~~h~~~~----~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~ 273 (397)
T 1sq9_A 219 P--LYNFESQHSMINNS----NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 273 (397)
T ss_dssp E--EEEEECCC---CCC----CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred e--eEEEeccccccccC----CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccce
Confidence 4 444444 2 3 5677899999999444443313336788889887764433
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-07 Score=96.20 Aligned_cols=218 Identities=11% Similarity=0.014 Sum_probs=125.2
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
++.++|+....+.|+++++++ ++.+.+... .....+.|+|||+.++.. . ..|+++|+++++
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~--~~~~~~~~~-----~~v~~i~~~~dg~l~v~~-~----------~gl~~~d~~~g~- 120 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLAS--GRKTVHALP-----FMGSALAKISDSKQLIAS-D----------DGLFLRDTATGV- 120 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTT--TEEEEEECS-----SCEEEEEEEETTEEEEEE-T----------TEEEEEETTTCC-
T ss_pred CCEEEEEECCCCEEEEEECCC--CcEEEEECC-----CcceEEEEeCCCeEEEEE-C----------CCEEEEECCCCc-
Confidence 468889887778999999987 665555432 234556799999865543 2 369999998888
Q ss_pred cccEEcccCC-----CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 234 QEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 234 ~~~~~lt~~~-----~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
.+.+.... .......++|||+ |++....... ......||+++ + |+...+ .... .....+.|
T Consensus 121 --~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~-~~~~~~l~~~~-~--g~~~~~--~~~~-----~~~~~i~~ 186 (326)
T 2ghs_A 121 --LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKA-ETGAGSIYHVA-K--GKVTKL--FADI-----SIPNSICF 186 (326)
T ss_dssp --EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTC-CTTCEEEEEEE-T--TEEEEE--EEEE-----SSEEEEEE
T ss_pred --EEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcC-CCCceEEEEEe-C--CcEEEe--eCCC-----cccCCeEE
Confidence 66654321 2345678999998 5554432211 11245789888 4 554322 2221 23357899
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEecc--CC-eE---EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIES--NN-EV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~--~g-~~---~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
+|||+ +|+. +. ....|++++.+ +| +. +.+.... ...+.+ ..+.+. .++.+++..... .
T Consensus 187 s~dg~~lyv~-~~--~~~~I~~~d~~~~~Gl~~~~~~~~~~~~----~~~~~p--~gi~~d----~~G~lwva~~~~--~ 251 (326)
T 2ghs_A 187 SPDGTTGYFV-DT--KVNRLMRVPLDARTGLPTGKAEVFIDST----GIKGGM--DGSVCD----AEGHIWNARWGE--G 251 (326)
T ss_dssp CTTSCEEEEE-ET--TTCEEEEEEBCTTTCCBSSCCEEEEECT----TSSSEE--EEEEEC----TTSCEEEEEETT--T
T ss_pred cCCCCEEEEE-EC--CCCEEEEEEcccccCCcccCceEEEECC----CCCCCC--CeeEEC----CCCCEEEEEeCC--C
Confidence 99999 6654 33 23468888875 55 32 2221111 011111 123332 334455554322 3
Q ss_pred EEEEEECCCCceEEeccCCCceEEee-E-eCCEEEEEEeC
Q 004735 382 YLGILDDFGHSLSLLDIPFTDIDNIT-L-GNDCLFVEGAS 419 (732)
Q Consensus 382 ~ly~~~~~~~~~~~lt~~~~~v~~~~-~-~~~~~~~~~~~ 419 (732)
.|+++++++...+.+..+...+..+. . ++++.+|+++.
T Consensus 252 ~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 252 AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 58888986665667766655566663 2 34444444443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=6.8e-07 Score=95.77 Aligned_cols=248 Identities=11% Similarity=0.041 Sum_probs=144.6
Q ss_pred CceeEEECC-EEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 147 ~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+.+..++++ .++++...++.|.++|+.+ ++ .+.+... .......+|+|+|+.|+....+ ..|.
T Consensus 111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~~~~~~l~~h----~~~V~~v~~~~~~~~l~sgs~D---------~~i~ 175 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGH----TDSVQDISFDHSGKLLASCSAD---------MTIK 175 (410)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTT--CCCCEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEEecc----CCcEEEEEEcCCCCEEEEEeCC---------CeEE
Confidence 334445543 5666767788999999987 44 3444433 3345678899999976555442 4677
Q ss_pred EEEcCCCCccccE-EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccC
Q 004735 225 AIALNGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (732)
Q Consensus 225 ~~d~~~~~~~~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~ 303 (732)
++|+.+++ .. .+......+....|+|||+.|+-.+ ....|.++|+. +|.. +..+.+.. ..+
T Consensus 176 iwd~~~~~---~~~~~~~h~~~V~~v~~~p~~~~l~s~s--------~D~~i~~wd~~-~~~~--~~~~~~h~----~~v 237 (410)
T 1vyh_C 176 LWDFQGFE---CIRTMHGHDHNVSSVSIMPNGDHIVSAS--------RDKTIKMWEVQ-TGYC--VKTFTGHR----EWV 237 (410)
T ss_dssp EEETTSSC---EEECCCCCSSCEEEEEECSSSSEEEEEE--------TTSEEEEEETT-TCCE--EEEEECCS----SCE
T ss_pred EEeCCCCc---eeEEEcCCCCCEEEEEEeCCCCEEEEEe--------CCCeEEEEECC-CCcE--EEEEeCCC----ccE
Confidence 78888766 33 3333345567789999999887665 23458999998 6754 44555554 556
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeee-------ecCCCCEEEEEE
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQ-------SHGEKNLIACSY 375 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~-------~~~~~~~l~~~s 375 (732)
....|+|||+++++... .+. |.++|..+++..... .....+....|.+......... .....+.++++.
T Consensus 238 ~~~~~~~~g~~l~s~s~-D~~--v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSN-DQT--VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEECTTSSEEEEEET-TSC--EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEECCCCCEEEEEcC-CCe--EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 77889999995555554 444 555566666544322 2222222223333110000000 000113456666
Q ss_pred EECCEEEEEEEECCCCce-EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 376 RQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 376 ~~~g~~~ly~~~~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
..++.-.|| |+.+++. ..+......+..+ ..+++.+++.++.. ..|.++|+.+++
T Consensus 315 s~D~~i~iw--d~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D---~~i~vwd~~~~~ 371 (410)
T 1vyh_C 315 SRDKTIKMW--DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD---KTLRVWDYKNKR 371 (410)
T ss_dssp ETTSEEEEE--ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT---TEEEEECCTTSC
T ss_pred eCCCeEEEE--ECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCc
Confidence 667765555 7776653 4455455567776 44555566555533 367777776654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-07 Score=100.24 Aligned_cols=292 Identities=11% Similarity=-0.020 Sum_probs=155.9
Q ss_pred ccCceEEcC-CCcEEEEeecC-------CCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEE
Q 004735 90 RLGGTAVDG-HGRLIWLESRP-------TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFS 160 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~ 160 (732)
.+..++|+| ++.+..+.... ..++...+|..... ...+.+... .+...+.+..++++ .++++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~--~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~ 84 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA--DSEKPIASL-------QVDSKFNDLDWSHNNKIIAG 84 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG--GGCSCSCCC-------CCSSCEEEEEECSSSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCC--CCCcEEEEE-------ecCCceEEEEECCCCCeEEE
Confidence 456889999 77566665221 24567777766433 111111100 11222334455433 34445
Q ss_pred eCCCCeEEEEeCCCCC---CCceecCCCCCCCCeEeeceeecCC-CCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc--
Q 004735 161 NYKDQRLYKHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-- 234 (732)
Q Consensus 161 ~~~~~~l~~~d~~~~~---~~~~~lt~~~~~~~~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-- 234 (732)
...++.|.++++.+.. .....+... ........|+|+ ++.| ++.... ..|.++|+.+++..
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l-~s~~~d--------g~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFSNH----SSSVKTVKFNAKQDNVL-ASGGNN--------GEIFIWDMNKCTESPS 151 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECCCS----SSCCCEEEECSSSTTBE-EEECSS--------SCEEBCBTTTTSSCTT
T ss_pred EccCCeEEEeecccccccccchhhccCC----ccceEEEEEcCCCCCEE-EEEcCC--------CeEEEEECCCCccccc
Confidence 4467789999987410 122333332 334567889999 6654 444322 47888898875300
Q ss_pred --ccEEc---ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCC------CCCccccC
Q 004735 235 --EPKVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF------DPTIVESP 303 (732)
Q Consensus 235 --~~~~l---t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~------~~~~~~~~ 303 (732)
....+ ...........|+|||..+++.... ...|.++|+. +++. ...+... . ..+
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------dg~v~iwd~~-~~~~--~~~~~~~~~~~~~~----~~v 217 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-------SNFASIWDLK-AKKE--VIHLSYTSPNSGIK----QQL 217 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-------SSCEEEEETT-TTEE--EEEECCCCCSSCCC----CCE
T ss_pred cccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-------CCCEEEEECC-CCCc--ceEEeccccccccC----Cce
Confidence 01122 2233445678999995444444322 2348999998 6654 3333332 2 456
Q ss_pred cCceeCCCCc-EEEEEeccCC-eeeEEEEeccCC-eEEEecc--cccccCCCceeecccceeeeeecCCCCEEEEEEEEC
Q 004735 304 TEPKWSSKGE-LFFVTDRKNG-FWNLHKWIESNN-EVLAIYS--LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (732)
Q Consensus 304 ~~~~wspDg~-l~~~~~~~~g-~~~l~~~d~~~g-~~~~l~~--~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~ 378 (732)
..+.|+|||. +++.... .+ ...|.++|+.++ +...... ....+.. +.|.+ +++.++++...+
T Consensus 218 ~~~~~~~~~~~~l~~~~~-d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~---------~~~s~---~~~~~l~s~~~d 284 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATG-SDNDPSILIWDLRNANTPLQTLNQGHQKGILS---------LDWCH---QDEHLLLSSGRD 284 (416)
T ss_dssp EEEEECSSCTTEEEEEEC-CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE---------EEECS---SCSSCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEC-CCCCceEEEEeCCCCCCCcEEeecCccCceeE---------EEeCC---CCCCeEEEEeCC
Confidence 7889999986 6666554 33 225666777765 2222222 2222222 33331 355566666667
Q ss_pred CEEEEEEEECCCCce-EEeccCCCceEEe-eEeCC-EEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 379 GRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGND-CLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 379 g~~~ly~~~~~~~~~-~~lt~~~~~v~~~-~~~~~-~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.-.|| ++.+++. ..+......+..+ ..+++ .+++.++.. ..|.++|+.+++
T Consensus 285 g~v~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d---~~i~iw~~~~~~ 339 (416)
T 2pm9_A 285 NTVLLW--NPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD---NKIEVQTLQNLT 339 (416)
T ss_dssp SEEEEE--CSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS---SEEEEEESCCCC
T ss_pred CCEEEe--eCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC---CcEEEEEccCCC
Confidence 765555 6666654 4455545556666 33444 555554432 457777877665
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.82 E-value=5.4e-07 Score=95.69 Aligned_cols=239 Identities=8% Similarity=-0.073 Sum_probs=141.8
Q ss_pred CceeEEECCEEEEEeCCCCeEEEEeCCCCCCC-------ceecCCCCCCCCeEeeceeecCC----C---CEEEEEEecc
Q 004735 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPR----F---NRYVTVREDR 212 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~-------~~~lt~~~~~~~~~~~~~~~spd----G---~~l~~~~~~~ 212 (732)
+.+..+++ .++++...++.|.++++.+ +. ...+... ........|+|+ | +.|+....+
T Consensus 19 i~~~~~~~-~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~g~~~~~l~s~~~d- 90 (397)
T 1sq9_A 19 IFSVSACN-SFTVSCSGDGYLKVWDNKL--LDNENPKDKSYSHFVH----KSGLHHVDVLQAIERDAFELCLVATTSFS- 90 (397)
T ss_dssp EEEEEECS-SEEEEEETTSEEEEEESBC--CTTCCGGGGEEEEECC----TTCEEEEEEEEEEETTTEEEEEEEEEETT-
T ss_pred eEEEEecC-CeEEEEcCCCEEEEEECCC--cccccCCCcceEEecC----CCcEEEEEEecccccCCccccEEEEEcCC-
Confidence 34555666 4555666788999999987 44 3333332 234567789999 8 876665442
Q ss_pred CCCCCCceeEEEEEEcCCCCcccc-----EE-cccC-----CCceeccccC----CCCCe-EEEEeccCCCCCCCccEEE
Q 004735 213 RQDALNSTTEIVAIALNGQNIQEP-----KV-LVSG-----SDFYAFPRMD----PRGER-MAWIEWHHPNMPWDKAELW 276 (732)
Q Consensus 213 ~~~~~~~~~~l~~~d~~~~~~~~~-----~~-lt~~-----~~~~~~p~~S----PDG~~-la~~~~~~~~~~~~~~~l~ 276 (732)
..|+++++.+++ . .. +... ...+....|+ |||+. |+.... ...|+
T Consensus 91 --------g~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~--------dg~i~ 151 (397)
T 1sq9_A 91 --------GDLLFYRITRED---ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV--------KGTTY 151 (397)
T ss_dssp --------SCEEEEEEEECT---TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET--------TSCEE
T ss_pred --------CCEEEEEccCCc---ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC--------CCcEE
Confidence 467777877665 3 22 2222 2556778999 99998 776552 23488
Q ss_pred EEEecCC------Cceee---eEEec-------CCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEe
Q 004735 277 VGYISEN------GDVYK---RVCVA-------GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 277 v~d~~~~------g~~~~---~~~~~-------~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l 340 (732)
++|+. . ++... ...+. ... ..+..+.|+||| ++++... .+ .|..+|+.+++....
T Consensus 152 iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~-~l~~~~~-dg--~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 152 IWKFH-PFADESNSLTLNWSPTLELQGTVESPMTPS----QFATSVDISERG-LIATGFN-NG--TVQISELSTLRPLYN 222 (397)
T ss_dssp EEEEE-SSSSHHHHTTTCCCCEEEEEEEECCSSSSC----CCCCEEEECTTS-EEEEECT-TS--EEEEEETTTTEEEEE
T ss_pred EEeCC-ccccccccceeeccCcceeeeeeccccCCC----CCceEEEECCCc-eEEEEeC-CC--cEEEEECCCCceeEE
Confidence 88887 4 33211 00221 122 557788999999 6666554 44 466778877765443
Q ss_pred ccc-------ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEecc-------------C
Q 004735 341 YSL-------DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDI-------------P 399 (732)
Q Consensus 341 ~~~-------~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~-------------~ 399 (732)
... ...+.. +.|.+ +++.|+..+...+...|.++++.+++. ..+.. .
T Consensus 223 ~~~~~~h~~~~~~i~~---------i~~~~---~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (397)
T 1sq9_A 223 FESQHSMINNSNSIRS---------VKFSP---QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 290 (397)
T ss_dssp EECCC---CCCCCEEE---------EEECS---STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred EeccccccccCCccce---------EEECC---CCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence 322 222222 33432 667676666554446788888877664 44444 4
Q ss_pred CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 400 FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 400 ~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
...+..+ ..+++.+++.++.. ..|+++|+.+++.
T Consensus 291 ~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~ 325 (397)
T 1sq9_A 291 SSWVMSLSFNDSGETLCSAGWD---GKLRFWDVKTKER 325 (397)
T ss_dssp SSCEEEEEECSSSSEEEEEETT---SEEEEEETTTTEE
T ss_pred CCcEEEEEECCCCCEEEEEeCC---CeEEEEEcCCCce
Confidence 5557666 44455566655533 4788899887753
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=5.8e-07 Score=90.04 Aligned_cols=235 Identities=11% Similarity=0.013 Sum_probs=136.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCC--CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
.|+|++ .+.|+++++++ ...+.+.... ..+..+...++|+|+++.|+++.. . ...|++++++++.
T Consensus 3 ~l~~~~--~~~I~~~~~~g--~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~-~-------~~~I~~~~~~g~~- 69 (267)
T 1npe_A 3 HLLFAQ--TGKIERLPLER--NTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI-S-------EPSIGRASLHGGE- 69 (267)
T ss_dssp EEEEEE--EEEEEEEEESS--SCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET-T-------TTEEEEEESSSCC-
T ss_pred EEEEEc--CCeEEEEEecC--cccccccceeeecCCCCcEEEEEEecCCCEEEEEEC-C-------CCEEEEEecCCCC-
Confidence 466765 34799999986 4433221100 000123457789999888666543 2 2689999999876
Q ss_pred cccEEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 234 QEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 234 ~~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.+.+.. +.....+.+++|+++.|++... ....|++++++ +... ..+..... ..+..++++|++
T Consensus 70 --~~~~~~~~~~~p~~ia~d~~~~~lyv~d~-------~~~~I~~~~~~-g~~~--~~~~~~~~----~~P~~i~vd~~~ 133 (267)
T 1npe_A 70 --PTTIIRQDLGSPEGIALDHLGRTIFWTDS-------QLDRIEVAKMD-GTQR--RVLFDTGL----VNPRGIVTDPVR 133 (267)
T ss_dssp --CEEEECTTCCCEEEEEEETTTTEEEEEET-------TTTEEEEEETT-SCSC--EEEECSSC----SSEEEEEEETTT
T ss_pred --cEEEEECCCCCccEEEEEecCCeEEEEEC-------CCCEEEEEEcC-CCCE--EEEEECCC----CCccEEEEeeCC
Confidence 554432 2234456788999998987763 23469999986 3322 12222221 345677899976
Q ss_pred c-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 313 ~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
. ||+. +.......|+++++++...+.+.... ... ...+.+.+ +++.||++... ...|++++++++
T Consensus 134 g~lyv~-~~~~~~~~I~~~~~dg~~~~~~~~~~--~~~------P~gia~d~---~~~~lyv~d~~--~~~I~~~~~~g~ 199 (267)
T 1npe_A 134 GNLYWT-DWNRDNPKIETSHMDGTNRRILAQDN--LGL------PNGLTFDA---FSSQLCWVDAG--THRAECLNPAQP 199 (267)
T ss_dssp TEEEEE-ECCSSSCEEEEEETTSCCCEEEECTT--CSC------EEEEEEET---TTTEEEEEETT--TTEEEEEETTEE
T ss_pred CEEEEE-ECCCCCcEEEEEecCCCCcEEEEECC--CCC------CcEEEEcC---CCCEEEEEECC--CCEEEEEecCCC
Confidence 6 6654 43123467899988765544443211 111 12334432 57788887643 347888999876
Q ss_pred ceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 392 SLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 392 ~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..+.+.........+..+++.+++.... ...|+++|.++++.
T Consensus 200 ~~~~~~~~~~~P~gi~~d~~~lyva~~~---~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 200 GRRKVLEGLQYPFAVTSYGKNLYYTDWK---TNSVIAMDLAISKE 241 (267)
T ss_dssp EEEEEEECCCSEEEEEEETTEEEEEETT---TTEEEEEETTTTEE
T ss_pred ceEEEecCCCCceEEEEeCCEEEEEECC---CCeEEEEeCCCCCc
Confidence 6554433333334454456665553322 24789999887763
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.81 E-value=8.3e-09 Score=106.68 Aligned_cols=206 Identities=9% Similarity=0.045 Sum_probs=113.2
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcE
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 576 (732)
.|+++||.........|..++..|. .++.|+.+|++|.+.............+ ....+++.+.++.+. ..+++
T Consensus 91 ~l~~~hg~g~~~~~~~~~~l~~~L~-~~~~v~~~d~~G~g~~~~~~~~~~~~~~-~~~a~~~~~~i~~~~-----~~~p~ 163 (319)
T 2hfk_A 91 VLVGCTGTAANGGPHEFLRLSTSFQ-EERDFLAVPLPGYGTGTGTGTALLPADL-DTALDAQARAILRAA-----GDAPV 163 (319)
T ss_dssp EEEEECCCCTTCSTTTTHHHHHTTT-TTCCEEEECCTTCCBC---CBCCEESSH-HHHHHHHHHHHHHHH-----TTSCE
T ss_pred cEEEeCCCCCCCcHHHHHHHHHhcC-CCCceEEecCCCCCCCcccccCCCCCCH-HHHHHHHHHHHHHhc-----CCCCE
Confidence 7899998222333455666666664 6899999999976542000000000000 001233333333322 23579
Q ss_pred EEEEcChHHHHHHHHHh-C----CCcceEEEeecCcCCHH-H-HHhhcchhhhhhhhhhcC--Ch------hhhhhcCcc
Q 004735 577 CITGGSAGGYTTLAALA-F----RDTFKAGASLYGVADLS-M-LRAETHKFESRYIDNLVG--SE------KDYYEKSPI 641 (732)
Q Consensus 577 ~i~G~S~GG~~a~~~~~-~----p~~~~a~v~~~~~~d~~-~-~~~~~~~~~~~~~~~~~~--~~------~~~~~~sp~ 641 (732)
.++|||+||.+++.++. . ++.++.++++.+..... . +...........+...+. .. ..|......
T Consensus 164 ~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (319)
T 2hfk_A 164 VLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARFLAG 243 (319)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHS
T ss_pred EEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHHHHHHHHHHHHh
Confidence 99999999999998887 3 56799999887653211 0 000000000011110000 00 111110001
Q ss_pred ccCCCCCCCEEEEEeCCCCccChHH-HHHHHHHHHhC-CCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 642 NFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKEN-GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 642 ~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~-g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.....+++|+++++| +|..++... ... +... ..+++++.++ ++|.....+....+.+.+.+||.+...
T Consensus 244 ~~~~~i~~Pvl~i~g-~D~~~~~~~~~~~----~~~~~~~~~~~~~v~-g~H~~~~~e~~~~~~~~i~~~L~~~~~ 313 (319)
T 2hfk_A 244 PRPGRSSAPVLLVRA-SEPLGDWQEERGD----WRAHWDLPHTVADVP-GDHFTMMRDHAPAVAEAVLSWLDAIEG 313 (319)
T ss_dssp CCCCCCCSCEEEEEE-SSCSSCCCGGGCC----CSCCCSSCSEEEEES-SCTTHHHHTCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCCCEEEEEc-CCCCCCccccccc----hhhcCCCCCEEEEeC-CCcHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 124678899999999 998887654 222 2222 2246889998 589643324778888899999987664
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-07 Score=97.65 Aligned_cols=239 Identities=13% Similarity=0.042 Sum_probs=133.8
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l 167 (732)
.+..+.|+| ++.++... .++...+|. .. + +....+.. +...+.+..++++ ..+++...++.|
T Consensus 110 ~v~~~~~s~~~~~l~~~~----~dg~i~i~~--~~-~-~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGV----ENGELRLWN--KT-G-ALLNVLNF--------HRAPIVSVKWNKDGTHIISMDVENVT 173 (425)
T ss_dssp CEEEEEECTTSSEEEEEE----TTSCEEEEE--TT-S-CEEEEECC--------CCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred ceEEEEEcCCCCEEEEEe----CCCeEEEEe--CC-C-CeeeeccC--------CCccEEEEEECCCCCEEEEEecCCeE
Confidence 567899999 66555543 246666775 22 2 22221111 1112334444433 344455567889
Q ss_pred EEEeCCCCCCCce-ecCCCCCCC-----------CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 168 YKHSIDSKDSSPL-PITPDYGEP-----------LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 168 ~~~d~~~~~~~~~-~lt~~~~~~-----------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++|+.+ +... .+....... ........|+|++.. +.... ...|+++|+.+++.
T Consensus 174 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~g~i~~~d~~~~~~-- 239 (425)
T 1r5m_A 174 ILWNVIS--GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF-VIPGP---------KGAIFVYQITEKTP-- 239 (425)
T ss_dssp EEEETTT--TEEEEEECCC---------------CCCBSCCEEEETTEE-EEECG---------GGCEEEEETTCSSC--
T ss_pred EEEECCC--CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE-EEEcC---------CCeEEEEEcCCCce--
Confidence 9999976 4332 232221000 001566789998763 33322 25789999988761
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
...+...........|+|||+.|+.... ...|.++|+. +++. ...+.... ..+..+.|+||| ++
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------d~~i~i~d~~-~~~~--~~~~~~~~----~~i~~~~~~~~~-~l 303 (425)
T 1r5m_A 240 TGKLIGHHGPISVLEFNDTNKLLLSASD--------DGTLRIWHGG-NGNS--QNCFYGHS----QSIVSASWVGDD-KV 303 (425)
T ss_dssp SEEECCCSSCEEEEEEETTTTEEEEEET--------TSCEEEECSS-SBSC--SEEECCCS----SCEEEEEEETTT-EE
T ss_pred eeeeccCCCceEEEEECCCCCEEEEEcC--------CCEEEEEECC-CCcc--ceEecCCC----ccEEEEEECCCC-EE
Confidence 3344444455677899999998876652 2348999987 6654 44444443 567789999999 55
Q ss_pred EEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 316 FVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
+.... .+ .|.++|+.+++....... ...+... .|.+ +++.| ++...+|.-.|| ++.+++
T Consensus 304 ~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~~---------~~s~---~~~~l-~~~~~dg~i~i~--~~~~~~ 363 (425)
T 1r5m_A 304 ISCSM-DG--SVRLWSLKQNTLLALSIVDGVPIFAG---------RISQ---DGQKY-AVAFMDGQVNVY--DLKKLN 363 (425)
T ss_dssp EEEET-TS--EEEEEETTTTEEEEEEECTTCCEEEE---------EECT---TSSEE-EEEETTSCEEEE--ECHHHH
T ss_pred EEEeC-CC--cEEEEECCCCcEeEecccCCccEEEE---------EEcC---CCCEE-EEEECCCeEEEE--ECCCCc
Confidence 55544 34 567778877765544322 2222222 3332 55544 455556655555 554444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-07 Score=109.22 Aligned_cols=239 Identities=10% Similarity=0.009 Sum_probs=142.9
Q ss_pred ceeEEEC--CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 148 GAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 148 ~~~~~~~--~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.++++++ ..++.. ..++.|.++|+.++ ...+.+... ......+.|+|||++|+....+ ..|.+
T Consensus 17 ~~i~~sp~~~~la~~-~~~g~v~iwd~~~~-~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d---------g~i~v 81 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTT-LYSGRVEIWNYETQ-VEVRSIQVT----ETPVRAGKFIARKNWIIVGSDD---------FRIRV 81 (814)
T ss_dssp EEEEECSSSSEEEEE-ETTSEEEEEETTTT-EEEEEEECC----SSCEEEEEEEGGGTEEEEEETT---------SEEEE
T ss_pred EEEEECCCCCEEEEE-eCCCEEEEEECCCC-ceEEEEecC----CCcEEEEEEeCCCCEEEEEeCC---------CeEEE
Confidence 3444443 344444 46778999998862 233445433 3445778899999987766542 58999
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
+++.+++. ...+......+....|||||++|+..+ ....|.++|+. ++.. ....+.+.. ..+..
T Consensus 82 w~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~dg~i~vw~~~-~~~~-~~~~~~~~~----~~v~~ 145 (814)
T 3mkq_A 82 FNYNTGEK--VVDFEAHPDYIRSIAVHPTKPYVLSGS--------DDLTVKLWNWE-NNWA-LEQTFEGHE----HFVMC 145 (814)
T ss_dssp EETTTCCE--EEEEECCSSCEEEEEECSSSSEEEEEE--------TTSEEEEEEGG-GTSE-EEEEEECCS----SCEEE
T ss_pred EECCCCcE--EEEEecCCCCEEEEEEeCCCCEEEEEc--------CCCEEEEEECC-CCce-EEEEEcCCC----CcEEE
Confidence 99988761 344444556677889999999998665 23458899988 4422 134444444 56778
Q ss_pred ceeCC-CCcEEEEEeccCCeeeEEEEeccCCeEEEec-cc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEE
Q 004735 306 PKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (732)
Q Consensus 306 ~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ 382 (732)
+.|+| ||+++++... .| .|..+|+.+++..... .. ...+....|++. .++.++++...++.
T Consensus 146 ~~~~p~~~~~l~~~~~-dg--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~l~~~~~dg~-- 209 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCL-DR--TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-----------PDKPYMITASDDLT-- 209 (814)
T ss_dssp EEEETTEEEEEEEEET-TS--EEEEEETTCSSCSEEEECCCTTCCCEEEECCS-----------TTCCEEEEECTTSE--
T ss_pred EEEEcCCCCEEEEEeC-CC--eEEEEECCCCcceeEEecCCCCCEEEEEEEEC-----------CCCCEEEEEeCCCE--
Confidence 89999 7775555544 34 4666677665433222 11 122223334321 13445555555665
Q ss_pred EEEEECCCCce-EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 383 LGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 383 ly~~~~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
|.+++..+++. ..+......+..+ ..+++.+++.++.. ..|+++|+.+++.
T Consensus 210 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~v~vwd~~~~~~ 262 (814)
T 3mkq_A 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED---GTLKIWNSSTYKV 262 (814)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETT---SCEEEEETTTCSE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcE
Confidence 44557666653 4454455567666 44555555555533 3577788877653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-07 Score=92.29 Aligned_cols=220 Identities=12% Similarity=0.159 Sum_probs=124.5
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
++.++|+....+.|+++|+++ +..+.+... .....+.++|||+.++. .. ..|+++|.++++
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~--~~~~~~~~~-----~~~~~i~~~~dG~l~v~-~~----------~~l~~~d~~~g~- 84 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFT--KQVQRVTMD-----APVSSVALRQSGGYVAT-IG----------TKFCALNWKEQS- 84 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTT--CCEEEEECS-----SCEEEEEEBTTSSEEEE-ET----------TEEEEEETTTTE-
T ss_pred CCEEEEEECCCCEEEEEECCC--CcEEEEeCC-----CceEEEEECCCCCEEEE-EC----------CeEEEEECCCCc-
Confidence 568999988888999999987 655544332 23456789999994333 21 589999999887
Q ss_pred cccEEcccCC-----CceeccccCCCCCeEEEEeccCCCC----CCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 234 QEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNM----PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 234 ~~~~~lt~~~-----~~~~~p~~SPDG~~la~~~~~~~~~----~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
.+.+.... ...+...++|||+ |++..+..... ......||.++.+ |+... +.... ....
T Consensus 85 --~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~~~~--~~~~~-----~~pn 152 (297)
T 3g4e_A 85 --AVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD--HHVKK--YFDQV-----DISN 152 (297)
T ss_dssp --EEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT--SCEEE--EEEEE-----SBEE
T ss_pred --EEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC--CCEEE--Eeecc-----cccc
Confidence 55554321 1234568899998 66655332110 0124568888754 54422 22222 2345
Q ss_pred CceeCCCCc-EEEEEeccCCeeeEEEEec--cCCeEE---EecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC
Q 004735 305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIE--SNNEVL---AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (732)
Q Consensus 305 ~~~wspDg~-l~~~~~~~~g~~~l~~~d~--~~g~~~---~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~ 378 (732)
.++|+|||+ +|+.... . ..|++++. .+|+.. .+......... ...+.+- .++.|+++....
T Consensus 153 gi~~spdg~~lyv~~~~-~--~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~------p~g~~~d----~~G~lwva~~~~ 219 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSL-S--YSVDAFDYDLQTGQISNRRSVYKLEKEEQI------PDGMCID----AEGKLWVACYNG 219 (297)
T ss_dssp EEEECTTSCEEEEEEGG-G--TEEEEEEECTTTCCEEEEEEEEECCGGGCE------EEEEEEB----TTSCEEEEEETT
T ss_pred ceEEcCCCCEEEEecCC-C--CcEEEEeccCCCCcccCcEEEEECCCCCCC------CCeeEEC----CCCCEEEEEcCC
Confidence 789999999 6554333 3 35666654 566532 22211100011 1223332 334566555433
Q ss_pred CEEEEEEEECCCCc-eEEeccCCCceEEe-eE-eCCEEEEEEeC
Q 004735 379 GRSYLGILDDFGHS-LSLLDIPFTDIDNI-TL-GNDCLFVEGAS 419 (732)
Q Consensus 379 g~~~ly~~~~~~~~-~~~lt~~~~~v~~~-~~-~~~~~~~~~~~ 419 (732)
+ .|+++++++|+ ...+..+...+..+ .. ++.+.+|+++.
T Consensus 220 ~--~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 G--RVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp T--EEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred C--EEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 3 58889998665 45666665556666 22 34344444443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-06 Score=90.79 Aligned_cols=244 Identities=11% Similarity=0.019 Sum_probs=131.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++++...++.|+++|+++ ++.+.+.... ......+.++|||+.++....+ ... ...|+++|.+++.
T Consensus 57 ~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~---~~~~~~i~~~~dg~l~v~~~~~-~~~----~~~i~~~d~~~~~--- 123 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPET--KEIKRPFVSH---KANPAAIKIHKDGRLFVCYLGD-FKS----TGGIFAATENGDN--- 123 (333)
T ss_dssp CEEEEETTTCEEEEECTTT--CCEEEEEECS---SSSEEEEEECTTSCEEEEECTT-SSS----CCEEEEECTTSCS---
T ss_pred CEEEEECCCCEEEEEeCCC--CcEEEEeeCC---CCCcceEEECCCCcEEEEeCCC-CCC----CceEEEEeCCCCE---
Confidence 5777776778899999987 6666654211 2334667899999854443221 111 2589999999887
Q ss_pred cEEc-cc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 236 PKVL-VS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 236 ~~~l-t~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.+.+ .. .........++|||+ |++....... ......||+++.+ +++.... .... .....+.|+|||
T Consensus 124 ~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~-~~~~~~l~~~~~~-~~~~~~~--~~~~-----~~~~~i~~~~dg 193 (333)
T 2dg1_A 124 LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYS-TNPLGGVYYVSPD-FRTVTPI--IQNI-----SVANGIALSTDE 193 (333)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBT-TBCCEEEEEECTT-SCCEEEE--EEEE-----SSEEEEEECTTS
T ss_pred EEEEEccCccCCcccceEECCCCC-EEEEeccccc-cCCCceEEEEeCC-CCEEEEe--ecCC-----CcccceEECCCC
Confidence 5533 21 122345678999996 5555422110 0024568998876 5555322 2221 234578999999
Q ss_pred c-EEEEEeccCCeeeEEEEeccC-C-eEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 313 E-LFFVTDRKNGFWNLHKWIESN-N-EVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 313 ~-l~~~~~~~~g~~~l~~~d~~~-g-~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
+ +++.... ...|+++++++ + ....+... ...... ... ...+.+. .++.+++....++ .|++++.
T Consensus 194 ~~l~v~~~~---~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~--~~~i~~d----~~G~l~v~~~~~~--~v~~~d~ 261 (333)
T 2dg1_A 194 KVLWVTETT---ANRLHRIALEDDGVTIQPFGATIPYYFTG-HEG--PDSCCID----SDDNLYVAMYGQG--RVLVFNK 261 (333)
T ss_dssp SEEEEEEGG---GTEEEEEEECTTSSSEEEEEEEEEEECCS-SSE--EEEEEEB----TTCCEEEEEETTT--EEEEECT
T ss_pred CEEEEEeCC---CCeEEEEEecCCCcCcccccceEEEecCC-CCC--CCceEEC----CCCCEEEEEcCCC--EEEEECC
Confidence 8 6554332 23688888753 2 23222100 000000 011 1223443 3344655554333 5777888
Q ss_pred CCCceEEeccCCC------ceEEe-eEeC-CEEEEEEeCC--CCCcEEEEEEcCCC
Q 004735 389 FGHSLSLLDIPFT------DIDNI-TLGN-DCLFVEGASG--VEPSSVAKVTLDDH 434 (732)
Q Consensus 389 ~~~~~~~lt~~~~------~v~~~-~~~~-~~~~~~~~~~--~~~~~ly~~dl~~~ 434 (732)
+++..+.+..+.. .+..+ ..++ +.+++..... .....||++++...
T Consensus 262 ~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~~ 317 (333)
T 2dg1_A 262 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK 317 (333)
T ss_dssp TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecccC
Confidence 7666666654432 34444 3344 4554444332 22346888887643
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.1e-10 Score=122.00 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=78.7
Q ss_pred CCEEEEEcCCCCCccCCcc-cHHHHHHHHCCCEEEEEcCCCCC-CCChhhHHhhccCCCcccHHHHHHHHHHHHhc---C
Q 004735 495 PPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGST-GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---G 569 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rG~~-g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~ 569 (732)
.|+||++|||++....... ......|+++|++|+.+|||... |+..... ....+...+.|+.++++|+.++ .
T Consensus 115 ~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~~~---~~~~~n~gl~D~~~al~wv~~~i~~f 191 (551)
T 2fj0_A 115 LPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSLNS---TSVPGNAGLRDMVTLLKWVQRNAHFF 191 (551)
T ss_dssp EEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCCSS---SSCCSCHHHHHHHHHHHHHHHHTGGG
T ss_pred CCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccCcc---cCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 7999999998754333221 12235667899999999999531 1111100 0111234489999999999875 3
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCc
Q 004735 570 KADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGV 607 (732)
Q Consensus 570 ~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~ 607 (732)
..|+++|.|+|+|+||.+++.++. .+.+|+++|+.+|.
T Consensus 192 ggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 232 (551)
T 2fj0_A 192 GGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGT 232 (551)
T ss_dssp TEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCC
T ss_pred CCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCC
Confidence 468999999999999999998886 36789999999985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-07 Score=99.63 Aligned_cols=257 Identities=9% Similarity=-0.031 Sum_probs=139.5
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l 167 (732)
.+.+++|+| ++.++.+... ++...+|.....+| +....+.. ..+.....++.++++ ..+++...++.+
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~---dg~v~iwd~~~~~~-~~~~~~~~------~~~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADS---DKSLLVFDVDKTSK-NVLKLRKR------FCFSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGG---GTEEEEEEECSSSS-SCEEEEEE------EECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceEEEEEcCCCCEEEEEECC---CCeEEEEECcCCCC-ceeeeeec------ccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 467899999 7776666542 47777787753222 22222110 001112334555543 344454567889
Q ss_pred EEEeCCCCCCCce-----ecCCCCCCCCeEeeceeecCC---CCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE-E
Q 004735 168 YKHSIDSKDSSPL-----PITPDYGEPLVSYADGIFDPR---FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-V 238 (732)
Q Consensus 168 ~~~d~~~~~~~~~-----~lt~~~~~~~~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~ 238 (732)
+++++.+ +... .+... ........|+|| |++|+.... . ..|+++|+.+++ .. .
T Consensus 174 ~~~~~~~--~~~~~~~~~~~~~h----~~~v~~~~~sp~~~~~~~l~s~~~-d--------~~i~vwd~~~~~---~~~~ 235 (450)
T 2vdu_B 174 YSIDINS--IPEEKFTQEPILGH----VSMLTDVHLIKDSDGHQFIITSDR-D--------EHIKISHYPQCF---IVDK 235 (450)
T ss_dssp EEEETTS--CCCSSCCCCCSEEC----SSCEEEEEEEECTTSCEEEEEEET-T--------SCEEEEEESCTT---CEEE
T ss_pred EEEecCC--cccccccceeeecc----cCceEEEEEcCCCCCCcEEEEEcC-C--------CcEEEEECCCCc---eeee
Confidence 9999976 4332 22221 234566789999 877655443 2 478888988776 33 3
Q ss_pred -cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecC-------------------CCCC
Q 004735 239 -LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-------------------FDPT 298 (732)
Q Consensus 239 -lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~-------------------~~~~ 298 (732)
+......+....|| ||++|+..+ ....|.++|+. +|+......... ....
T Consensus 236 ~~~~h~~~v~~~~~s-d~~~l~s~~--------~d~~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
T 2vdu_B 236 WLFGHKHFVSSICCG-KDYLLLSAG--------GDDKIFAWDWK-TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI 305 (450)
T ss_dssp ECCCCSSCEEEEEEC-STTEEEEEE--------SSSEEEEEETT-TCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred eecCCCCceEEEEEC-CCCEEEEEe--------CCCeEEEEECC-CCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence 33344567788999 999988766 23469999998 776422211110 0000
Q ss_pred ccccCcCceeCCCCcEEEEEeccCCeeeEEEE-eccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEE
Q 004735 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKW-IESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (732)
Q Consensus 299 ~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~-d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~ 377 (732)
....+..+.|+|||++++......+.-.||.+ +..+++.+.+...... ... ..+.|. ++ .++++...
T Consensus 306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v-----~~~~~~----~~-~~~v~~~~ 373 (450)
T 2vdu_B 306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNV-----ISLSAH----ND-EFQVTLDN 373 (450)
T ss_dssp BCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCE-----EEEEEE----TT-EEEEEECC
T ss_pred ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--Cce-----EEEEec----CC-cEEEEEec
Confidence 01345678999999944444421455555554 2233333332211111 111 233444 43 34444432
Q ss_pred -C------CEEEEEEEECCCCceEEec
Q 004735 378 -N------GRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 378 -~------g~~~ly~~~~~~~~~~~lt 397 (732)
+ ..-.||.++.++++++ ++
T Consensus 374 ~~~~~~~~~~i~v~~~~~~~~~~~-~~ 399 (450)
T 2vdu_B 374 KESSGVQKNFAKFIEYNLNENSFV-VN 399 (450)
T ss_dssp TTCCSSCCCSEEEEEEETTTTEEE-EC
T ss_pred ccCCCCCCcceEEEEEEcCCCeEE-Ec
Confidence 1 2248999888877664 44
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.78 E-value=8.1e-07 Score=93.24 Aligned_cols=239 Identities=11% Similarity=0.025 Sum_probs=131.9
Q ss_pred CceeEEECC-EEEEEeCCCCeEEEEeCCCCCC---CceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeE
Q 004735 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDS---SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (732)
Q Consensus 147 ~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~---~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 222 (732)
+.+..++++ .+++....++.|+++++.+ + ....+... ........|+|||+.|+....+ ..
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~~~~d---------g~ 75 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVHELKEH----NGQVTGVDWAPDSNRIVTCGTD---------RN 75 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEET--TEEEEEEEEECC----SSCEEEEEEETTTTEEEEEETT---------SC
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCC--CcEEeeeeecCC----CCcccEEEEeCCCCEEEEEcCC---------Ce
Confidence 344455433 3445555678899999986 5 33444433 3455678899999987665542 46
Q ss_pred EEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce-eeeEEe-cCCCCCcc
Q 004735 223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCV-AGFDPTIV 300 (732)
Q Consensus 223 l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~-~~~~~~-~~~~~~~~ 300 (732)
|.++|+.+++......+...........|+|||+.|+....+ ..|.++|+. .++. .....+ ....
T Consensus 76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~v~i~d~~-~~~~~~~~~~~~~~~~---- 142 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--------RVISICYFE-QENDWWVCKHIKKPIR---- 142 (372)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT--------SSEEEEEEE-TTTTEEEEEEECTTCC----
T ss_pred EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC--------CEEEEEEec-CCCcceeeeeeecccC----
Confidence 777788776510011123334456678999999998877622 237888887 4431 112222 2323
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEe----------------ccCCeEE-EecccccccCCCceeecccceeeee
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWI----------------ESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQ 363 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d----------------~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~ 363 (732)
..+..+.|+|||+++++... .+.-.+|-+. ...++.. .+......+. .+.|.+
T Consensus 143 ~~i~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~ 212 (372)
T 1k8k_C 143 STVLSLDWHPNSVLLAAGSC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH---------GVCFSA 212 (372)
T ss_dssp SCEEEEEECTTSSEEEEEET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE---------EEEECS
T ss_pred CCeeEEEEcCCCCEEEEEcC-CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEE---------EEEECC
Confidence 56778899999995555544 4554444322 1223322 2222211222 233432
Q ss_pred ecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 364 SHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 364 ~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
+++.| ++...++.-.+| +..+++ ...+......+..+ ..+++.+++.+ .++. ++++++.+
T Consensus 213 ---~~~~l-~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~--i~i~~~~~ 274 (372)
T 1k8k_C 213 ---NGSRV-AWVSHDSTVCLA--DADKKMAVATLASETLPLLAVTFITESSLVAAG--HDCF--PVLFTYDS 274 (372)
T ss_dssp ---SSSEE-EEEETTTEEEEE--EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--TTSS--CEEEEEET
T ss_pred ---CCCEE-EEEeCCCEEEEE--ECCCCceeEEEccCCCCeEEEEEecCCCEEEEE--eCCe--EEEEEccC
Confidence 55544 455566655555 665555 44555555567777 45666665544 3333 44444444
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-08 Score=100.39 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCCCccCCccc-HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
..+.||++||..... ...|. .+...|.++||.|+.+|++|.+... .. ...+++.+.++.+.+...
T Consensus 64 ~~~pVVLvHG~~~~~-~~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~---~~--------~~~~~la~~I~~l~~~~g-- 129 (316)
T 3icv_A 64 VSKPILLVPGTGTTG-PQSFDSNWIPLSAQLGYTPCWISPPPFMLND---TQ--------VNTEYMVNAITTLYAGSG-- 129 (316)
T ss_dssp CSSEEEEECCTTCCH-HHHHTTTHHHHHHHTTCEEEEECCTTTTCSC---HH--------HHHHHHHHHHHHHHHHTT--
T ss_pred CCCeEEEECCCCCCc-HHHHHHHHHHHHHHCCCeEEEecCCCCCCCc---HH--------HHHHHHHHHHHHHHHHhC--
Confidence 456799999973322 13455 6788899999999999998753211 11 124667788888877632
Q ss_pred CCcEEEEEcChHHHHHHHHHh-C---CCcceEEEeecCcCC
Q 004735 573 EKRLCITGGSAGGYTTLAALA-F---RDTFKAGASLYGVAD 609 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~---p~~~~a~v~~~~~~d 609 (732)
.+++.|+||||||.++.+++. + +++++.+|++++...
T Consensus 130 ~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 130 NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred CCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 368999999999999987776 4 589999999988653
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=102.77 Aligned_cols=101 Identities=14% Similarity=-0.004 Sum_probs=74.4
Q ss_pred CCCCEEEEEcCCCCCcc---CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcC
Q 004735 493 EKPPLLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG 569 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~---~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 569 (732)
+..|.||++||...... ...|....+.|.++||.|+++|++|.+. +. ...+++.+.++.+++..
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g~g~---s~----------~~~~~~~~~i~~~~~~~ 71 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDT---SE----------VRGEQLLQQVEEIVALS 71 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSSC---HH----------HHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCCCCC---ch----------hhHHHHHHHHHHHHHHh
Confidence 34578999999754432 3456778889999999999999996543 21 11344445554444432
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 570 KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 570 ~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
+.+++.|+|||+||.++..++. +|++++++|++++..
T Consensus 72 --~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 72 --GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp --CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred --CCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 3468999999999999999988 999999999998854
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.78 E-value=9.1e-07 Score=91.68 Aligned_cols=274 Identities=8% Similarity=-0.018 Sum_probs=150.3
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCC---CcccCCCCCcccccccccCCceeEEE-CCE-EEEEeCC
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDE---PSDITPKEYAVRTTAQEYGGGAFRIF-GDT-VIFSNYK 163 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~~l~~~~~~~~~~~~~~g~~~~~~~-~~~-i~f~~~~ 163 (732)
.+.+++|+| ++.++... .++...+|..... .. ...+. .+.....+..++ ++. .+++...
T Consensus 13 ~v~~~~~s~~~~~l~~~~----~d~~v~iw~~~~~--~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITS----WDGSLTVYKFDIQ--AKNVDLLQSL---------RYKHPLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE----TTSEEEEEEEETT--TTEEEEEEEE---------ECSSCEEEEEEEESSSEEEEEEET
T ss_pred cEEEEEEcCCCCEEEEEc----CCCeEEEEEeCCC--Cccccceeee---------ecCCceEEEEECCCCCcEEEEEcC
Confidence 567899999 66665543 2477677766433 11 11111 111223334444 234 5556567
Q ss_pred CCeEEEEeC-CCCCCCceecCC--CCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC---------C
Q 004735 164 DQRLYKHSI-DSKDSSPLPITP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG---------Q 231 (732)
Q Consensus 164 ~~~l~~~d~-~~~~~~~~~lt~--~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~---------~ 231 (732)
++.|+++++ .+ +....+.. . ........|+| ++.++....+ ..|.++|+.+ +
T Consensus 78 dg~i~~wd~~~~--~~~~~~~~~~~----~~~v~~l~~~~-~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 78 QGEILKVDLIGS--PSFQALTNNEA----NLGICRICKYG-DDKLIAASWD---------GLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp TSCEEEECSSSS--SSEEECBSCCC----CSCEEEEEEET-TTEEEEEETT---------SEEEEECHHHHTTBCEEEEE
T ss_pred CCeEEEEEeccC--CceEeccccCC----CCceEEEEeCC-CCEEEEEcCC---------CeEEEEcccccccccccccC
Confidence 789999999 87 66666665 3 34456778999 8876655442 5788888876 4
Q ss_pred CccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC-CceeeeEEecCCCCCccccCcCceeCC
Q 004735 232 NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 232 ~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~-g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
+ ...............|+||+ |+... ....|.++|+. + +............ ..+..+.|+|
T Consensus 142 ~---~~~~~~~~~~v~~~~~~~~~--l~~~~--------~d~~i~i~d~~-~~~~~~~~~~~~~~~----~~i~~i~~~~ 203 (342)
T 1yfq_A 142 L---NSNNTKVKNKIFTMDTNSSR--LIVGM--------NNSQVQWFRLP-LCEDDNGTIEESGLK----YQIRDVALLP 203 (342)
T ss_dssp S---CSSSSSSCCCEEEEEECSSE--EEEEE--------STTEEEEEESS-CCTTCCCEEEECSCS----SCEEEEEECS
T ss_pred C---eeeEEeeCCceEEEEecCCc--EEEEe--------CCCeEEEEECC-ccccccceeeecCCC----CceeEEEECC
Confidence 4 22222344456678899998 55444 23459999998 5 4422222333333 5567889999
Q ss_pred -CCcEEEEEeccCCeeeEEEEeccC-----CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 311 -KGELFFVTDRKNGFWNLHKWIESN-----NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 311 -Dg~l~~~~~~~~g~~~l~~~d~~~-----g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
||+++++... .|...||.++..+ .....+...........-......+.|.+ +++.| ++...+|. |+
T Consensus 204 ~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l-~~~~~dg~--i~ 276 (342)
T 1yfq_A 204 KEQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP---RHKFL-YTAGSDGI--IS 276 (342)
T ss_dssp GGGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT---TTCCE-EEEETTSC--EE
T ss_pred CCCCEEEEEec-CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC---CCCEE-EEecCCce--EE
Confidence 9985555555 5766676665541 22222221111000000000112334442 55544 45555665 44
Q ss_pred EEECCCCce-EEeccC-CCceEEeeEeCCEEEEEEeCC
Q 004735 385 ILDDFGHSL-SLLDIP-FTDIDNITLGNDCLFVEGASG 420 (732)
Q Consensus 385 ~~~~~~~~~-~~lt~~-~~~v~~~~~~~~~~~~~~~~~ 420 (732)
++++.+++. ..+... ...+..+. +++.+++.++..
T Consensus 277 vwd~~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~s~D 313 (342)
T 1yfq_A 277 CWNLQTRKKIKNFAKFNEDSVVKIA-CSDNILCLATSD 313 (342)
T ss_dssp EEETTTTEEEEECCCCSSSEEEEEE-ECSSEEEEEEEC
T ss_pred EEcCccHhHhhhhhcccCCCceEec-CCCCeEEEEecC
Confidence 557777664 344444 55566666 566666555543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.8e-07 Score=90.93 Aligned_cols=206 Identities=13% Similarity=0.105 Sum_probs=121.5
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccc-ccccccCCceeEEECC-EEEEEeCCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVR-TTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~-~i~f~~~~~~ 165 (732)
..+..++|+| +..+...-. .++...+|..... ...... ..+ -.-|...+.+..++.+ ..+++...++
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s---~D~~v~~W~~~~~--~~~~~~-----~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSAS---RDKTLISWKLTGD--DQKFGV-----PVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEE---TTSEEEEEEEEEE--TTEEEE-----EEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEEEccCCCccEEEEec---CCccEEEecCCCC--Cccccc-----cceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3456788998 656666655 3477677765322 010000 000 0012222333444433 4566666788
Q ss_pred eEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 166 RLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 166 ~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
.|.++|+.+ ++. +.+... ........|+|+|+.|+....+ ..|.++|+.+.. ...+.....
T Consensus 88 ~v~~wd~~~--~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~D---------~~i~vwd~~~~~---~~~~~~h~~ 149 (319)
T 3frx_A 88 TLRLWDVAT--GETYQRFVGH----KSDVMSVDIDKKASMIISGSRD---------KTIKVWTIKGQC---LATLLGHND 149 (319)
T ss_dssp EEEEEETTT--TEEEEEEECC----SSCEEEEEECTTSCEEEEEETT---------SCEEEEETTSCE---EEEECCCSS
T ss_pred EEEEEECCC--CCeeEEEccC----CCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCe---EEEEeccCC
Confidence 999999987 543 334333 3345677899999986655442 467777887665 555555555
Q ss_pred ceeccccCCC------CCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEE
Q 004735 245 FYAFPRMDPR------GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (732)
Q Consensus 245 ~~~~p~~SPD------G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~ 318 (732)
.+...+|+|+ +..|+-.+ . ...|.++|+. +++. ...+.+.. ..+..+.|+|||+++++.
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~-~-------d~~i~~wd~~-~~~~--~~~~~~h~----~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAG-N-------DKMVKAWNLN-QFQI--EADFIGHN----SNINTLTASPDGTLIASA 214 (319)
T ss_dssp CEEEEEECCC------CCEEEEEE-T-------TSCEEEEETT-TTEE--EEEECCCC----SCEEEEEECTTSSEEEEE
T ss_pred cEEEEEEccCCCCCCCccEEEEEe-C-------CCEEEEEECC-cchh--heeecCCC----CcEEEEEEcCCCCEEEEE
Confidence 5666778774 44565444 2 2348888987 5544 34445554 567788999999955555
Q ss_pred eccCCeeeEEEEeccCCeEEEe
Q 004735 319 DRKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~g~~~~l 340 (732)
.. .+. |.++|+.+++....
T Consensus 215 ~~-dg~--i~iwd~~~~~~~~~ 233 (319)
T 3frx_A 215 GK-DGE--IMLWNLAAKKAMYT 233 (319)
T ss_dssp ET-TCE--EEEEETTTTEEEEE
T ss_pred eC-CCe--EEEEECCCCcEEEE
Confidence 44 444 66668777765433
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-06 Score=91.82 Aligned_cols=256 Identities=8% Similarity=0.007 Sum_probs=134.2
Q ss_pred CCEEEEEeCCC----CeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccC-CCCCCceeEEEEEE
Q 004735 154 GDTVIFSNYKD----QRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR-QDALNSTTEIVAIA 227 (732)
Q Consensus 154 ~~~i~f~~~~~----~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~-~~~~~~~~~l~~~d 227 (732)
+.+++..+... +.|.++|+++ .+. ..+..+ ..- .+.+||||++++....... .........|.++|
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t--~~vv~~I~vG-----~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGST--GRILGMTDGG-----FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEEC-----SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEECCCcCCCCCeEEEEECCC--CEEEEEEECC-----CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 44666666544 6899999987 433 333332 112 6789999998655432100 00000026899999
Q ss_pred cCCCCccccEEcccC--C-----CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCC-----
Q 004735 228 LNGQNIQEPKVLVSG--S-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF----- 295 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~--~-----~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~----- 295 (732)
..+++. ...+.-+ . ..-.+..+||||++|+...... ...|.++|+. ++++.....+.+.
T Consensus 156 ~~t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~------~~~VsVID~~-t~kvv~~I~v~g~~~~~p 226 (426)
T 3c75_H 156 PVTFLP--IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP------APAVGVVDLE-GKTFDRMLDVPDCYHIFP 226 (426)
T ss_dssp TTTCCE--EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS------SCEEEEEETT-TTEEEEEEECCSEEEEEE
T ss_pred CCCCcE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC------CCeEEEEECC-CCeEEEEEEcCCceeecc
Confidence 998872 2333211 1 1234578999999986654221 3458888887 6654221111100
Q ss_pred -----------C---------CCcc-------------ccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 296 -----------D---------PTIV-------------ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 296 -----------~---------~~~~-------------~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
+ .... .....+.+++||+ ++|.+. .+ .++.+|..++..+.+.
T Consensus 227 ~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--~g--~V~ViD~~~~~~~v~~ 302 (426)
T 3c75_H 227 ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY--TG--KIFQADLTAEGATFRA 302 (426)
T ss_dssp EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT--TS--EEEEEEECSSCEEECC
T ss_pred CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC--CC--cEEEEeccCCceEEee
Confidence 0 0000 0001123455555 444432 12 5777777665544332
Q ss_pred ccc---cccCCCceeecc-cceeeeeecCCCCEEEEEEEEC-------CEEEEEEEECCCCce-EEeccCCCceEEe-eE
Q 004735 342 SLD---AEFSRPLWVFGI-NSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSL-SLLDIPFTDIDNI-TL 408 (732)
Q Consensus 342 ~~~---~~~~~~~w~~~~-~~~~~~~~~~~~~~l~~~s~~~-------g~~~ly~~~~~~~~~-~~lt~~~~~v~~~-~~ 408 (732)
... .......|.+.. ..+.+.+ +++++|+..... +...|.++|+++.++ ..+..+.. ...+ ..
T Consensus 303 ~~~~~~~~~i~~g~~p~g~~~va~s~---dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~-P~gia~s 378 (426)
T 3c75_H 303 PIEALTEAERADDWRPGGWQQTAYHR---QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE-IDSINVS 378 (426)
T ss_dssp CEESSCTTTGGGTEEECSSSCEEEEG---GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-ECEEEEC
T ss_pred eeeeccccccccccccCCceeeEEcC---CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC-cCeEEEc
Confidence 110 000112244322 2345554 778888776432 356899999998875 34543321 2223 33
Q ss_pred eCCE-EEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 409 GNDC-LFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 409 ~~~~-~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+++ ++|..... ...|.++|++++++
T Consensus 379 pDg~~~lyv~n~~--s~~VsVID~~t~kv 405 (426)
T 3c75_H 379 QDAEPLLYALSAG--TQTLHIYDAATGEE 405 (426)
T ss_dssp CSSSCEEEEEETT--TTEEEEEETTTCCE
T ss_pred cCCCEEEEEEcCC--CCeEEEEECCCCCE
Confidence 4444 66655532 35799999998875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=100.88 Aligned_cols=236 Identities=10% Similarity=0.028 Sum_probs=132.0
Q ss_pred CCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC----CCcccc
Q 004735 162 YKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----QNIQEP 236 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~~ 236 (732)
..++.|.++++.+ +... .+.... .......++|+|||++|+....+ ..|.++++.+ .+ ..
T Consensus 42 ~~d~~v~iw~~~~--~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d---------g~v~vw~~~~~~~~~~--~~ 106 (416)
T 2pm9_A 42 STDSSLELWSLLA--ADSEKPIASLQ--VDSKFNDLDWSHNNKIIAGALDN---------GSLELYSTNEANNAIN--SM 106 (416)
T ss_dssp CCCCCCEEEESSS--GGGCSCSCCCC--CSSCEEEEEECSSSSCEEEEESS---------SCEEEECCSSTTSCCC--EE
T ss_pred CCCCeEEEEEccC--CCCCcEEEEEe--cCCceEEEEECCCCCeEEEEccC---------CeEEEeeccccccccc--ch
Confidence 4567899999986 4321 221110 13456778899999987665542 4677778876 21 13
Q ss_pred EEcccCCCceeccccCCC-CCeEEEEeccCCCCCCCccEEEEEEecCCCc------e-eeeEEecCCCCCccccCcCcee
Q 004735 237 KVLVSGSDFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENGD------V-YKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 237 ~~lt~~~~~~~~p~~SPD-G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~------~-~~~~~~~~~~~~~~~~~~~~~w 308 (732)
..+......+....|+|| ++.|+..+ . ...|+++|+. +++ . .......... ..+..+.|
T Consensus 107 ~~~~~h~~~v~~~~~~~~~~~~l~s~~-~-------dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~ 173 (416)
T 2pm9_A 107 ARFSNHSSSVKTVKFNAKQDNVLASGG-N-------NGEIFIWDMN-KCTESPSNYTPLTPGQSMSSV----DEVISLAW 173 (416)
T ss_dssp EECCCSSSCCCEEEECSSSTTBEEEEC-S-------SSCEEBCBTT-TTSSCTTTCCCBCCCCSCCSS----CCCCEEEE
T ss_pred hhccCCccceEEEEEcCCCCCEEEEEc-C-------CCeEEEEECC-CCccccccccccccccccCCC----CCeeEEEe
Confidence 444444556677899999 67665443 2 2348888987 553 1 1111112222 56778899
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC-EEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGIL 386 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g-~~~ly~~ 386 (732)
+||+. ++++... .+ .|.++|+.+++.............. ......+.|.+ ++..++++...++ ...|+++
T Consensus 174 ~~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~---~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 174 NQSLAHVFASAGS-SN--FASIWDLKAKKEVIHLSYTSPNSGI--KQQLSVVEWHP---KNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CSSCTTEEEEESS-SS--CEEEEETTTTEEEEEECCCCCSSCC--CCCEEEEEECS---SCTTEEEEEECCSSSCCCCEE
T ss_pred CCCCCcEEEEEcC-CC--CEEEEECCCCCcceEEecccccccc--CCceEEEEECC---CCCCEEEEEECCCCCceEEEE
Confidence 99954 6666554 44 3667788877654443221000000 00112234443 5545555555554 2245556
Q ss_pred ECCCC-c-eEEec-cCCCceEEe-eEe-CCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 387 DDFGH-S-LSLLD-IPFTDIDNI-TLG-NDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 387 ~~~~~-~-~~~lt-~~~~~v~~~-~~~-~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
++.++ . .+.+. .....+..+ ..+ ++.+++.++.. ..|.++|+.+++.
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d---g~v~~wd~~~~~~ 297 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD---NTVLLWNPESAEQ 297 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS---SEEEEECSSSCCE
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC---CCEEEeeCCCCcc
Confidence 77664 2 33444 345567776 333 56666666543 3688888887753
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.4e-09 Score=116.18 Aligned_cols=126 Identities=18% Similarity=0.243 Sum_probs=84.6
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-cc--HHH-HHHH-HCCCEEEEEcCCCCC-CCC--hhhHHhh
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LN--LSI-QYWT-SRGWAFVDVNYGGST-GYG--REFRERL 546 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~--~~~-~~l~-~~G~~v~~~d~rG~~-g~g--~~~~~~~ 546 (732)
+...+|.|.... +..+.|+||++|||++...... +. .++ +.++ ..|++|+.+|||... |+. .......
T Consensus 106 l~l~v~~P~~~~----~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~~gf~~~~~~~~~~ 181 (544)
T 1thg_A 106 LYLNVFRPAGTK----PDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITAEG 181 (544)
T ss_dssp CEEEEEEETTCC----TTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHHT
T ss_pred eEEEEEeCCCCC----CCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCcccCCCcccccccC
Confidence 455667786521 2456899999999876544332 21 122 2222 248999999999643 111 1111111
Q ss_pred ccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhC---------CCcceEEEeecCc
Q 004735 547 LGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---------RDTFKAGASLYGV 607 (732)
Q Consensus 547 ~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---------p~~~~a~v~~~~~ 607 (732)
.+...+.|+.++++|+.++ ...|++||.|+|+|+||++++.++.. ..+|+++|+.+|.
T Consensus 182 ---~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~ 251 (544)
T 1thg_A 182 ---NTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEeccc
Confidence 2234489999999999875 35799999999999999999877662 4579999999984
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-06 Score=91.91 Aligned_cols=190 Identities=12% Similarity=0.056 Sum_probs=110.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCc--e-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSP--L-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~--~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
.++.+...++.|.++++.+ +.. + .+..+ +.......+|||||++|+....+ ..+.++++.++.
T Consensus 29 ~~las~~~D~~i~iw~~~~--~~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~s~D---------~~v~iw~~~~~~ 94 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEG--DSWICKSVLSEG---HQRTVRKVAWSPCGNYLASASFD---------ATTCIWKKNQDD 94 (345)
T ss_dssp SCEEEEETTSCEEEEEEET--TEEEEEEEECSS---CSSCEEEEEECTTSSEEEEEETT---------SCEEEEEECCC-
T ss_pred CEEEEEcCCCeEEEEEcCC--Ccceeeeeeccc---cCCcEEEEEECCCCCEEEEEECC---------CcEEEEEccCCC
Confidence 3444555677788888875 432 1 12222 13445778899999987665543 345566666554
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCC-ceeeeEEecCCCCCccccCcCceeCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
......+......+...+|||||+.|+..+.+ ..|.++|+. ++ .......+.+.. ..+..+.|+||
T Consensus 95 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D--------~~v~iwd~~-~~~~~~~~~~~~~h~----~~v~~~~~~p~ 161 (345)
T 3fm0_A 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRD--------KSVWVWEVD-EEDEYECVSVLNSHT----QDVKHVVWHPS 161 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEETT--------SCEEEEEEC-TTSCEEEEEEECCCC----SCEEEEEECSS
T ss_pred eEEEEEccCCCCCceEEEEeCCCCEEEEEECC--------CeEEEEECC-CCCCeEEEEEecCcC----CCeEEEEECCC
Confidence 11123333444566778999999998876632 338888987 44 333344455544 56778899999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEE---ecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLA---IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~---l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|+++++... .+...|| +..+++... +......+. .+.|.+ +++. +++...++.-.||....
T Consensus 162 ~~~l~s~s~-d~~i~~w--~~~~~~~~~~~~~~~h~~~v~---------~l~~sp---~g~~-l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 162 QELLASASY-DDTVKLY--REEEDDWVCCATLEGHESTVW---------SLAFDP---SGQR-LASCSDDRTVRIWRQYL 225 (345)
T ss_dssp SSCEEEEET-TSCEEEE--EEETTEEEEEEEECCCSSCEE---------EEEECT---TSSE-EEEEETTSCEEEEEEEC
T ss_pred CCEEEEEeC-CCcEEEE--EecCCCEEEEEEecCCCCceE---------EEEECC---CCCE-EEEEeCCCeEEEecccc
Confidence 994444444 4554454 555554332 222211222 234442 5554 45666788888887644
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-06 Score=90.52 Aligned_cols=265 Identities=10% Similarity=0.046 Sum_probs=152.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~ 166 (732)
..+..+.|+| ++ +..+.. .++...+|....+ ...+.+.. |...+.+..++++ .++++...++.
T Consensus 109 ~~V~~~~~~p~~~-~l~s~s---~Dg~i~vwd~~~~--~~~~~l~~---------h~~~V~~v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 109 SPVTRVIFHPVFS-VMVSAS---EDATIKVWDYETG--DFERTLKG---------HTDSVQDISFDHSGKLLASCSADMT 173 (410)
T ss_dssp SCEEEEEECSSSS-EEEEEE---SSSCEEEEETTTC--CCCEEECC---------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CcEEEEEEcCCCC-EEEEEe---CCCeEEEEECCCC--cEEEEEec---------cCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 3456888998 55 333333 3467667765432 11222211 1122334444433 46666667888
Q ss_pred EEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 167 LYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 167 l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
|.++|+.+ ++. +.+... ........|+|+|++|+....+ ..|.++|+.++.. ...+......
T Consensus 174 i~iwd~~~--~~~~~~~~~h----~~~V~~v~~~p~~~~l~s~s~D---------~~i~~wd~~~~~~--~~~~~~h~~~ 236 (410)
T 1vyh_C 174 IKLWDFQG--FECIRTMHGH----DHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYC--VKTFTGHREW 236 (410)
T ss_dssp CCEEETTS--SCEEECCCCC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCE--EEEEECCSSC
T ss_pred EEEEeCCC--CceeEEEcCC----CCCEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCcE--EEEEeCCCcc
Confidence 99999986 443 333332 3445678899999986655432 5788999988761 3344444455
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC--------------
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK-------------- 311 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD-------------- 311 (732)
+....++|||+.|+-.+. ...|.++|+. +++. ...+.+.. ..+..+.|+|+
T Consensus 237 v~~~~~~~~g~~l~s~s~--------D~~v~vwd~~-~~~~--~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~~~ 301 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSN--------DQTVRVWVVA-TKEC--KAELREHR----HVVECISWAPESSYSSISEATGSET 301 (410)
T ss_dssp EEEEEECTTSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred EEEEEECCCCCEEEEEcC--------CCeEEEEECC-CCce--eeEecCCC----ceEEEEEEcCcccccchhhhccccc
Confidence 667789999998876652 2338888987 6654 33444443 55667788886
Q ss_pred ------CcEEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 312 ------GELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 312 ------g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
|.++++... .+ .|..+|+.+++..... .....+ ..+.|.+ +++ ++++...++.-.||
T Consensus 302 ~~~~~~g~~l~sgs~-D~--~i~iwd~~~~~~~~~~~~h~~~v---------~~v~~~~---~g~-~l~s~s~D~~i~vw 365 (410)
T 1vyh_C 302 KKSGKPGPFLLSGSR-DK--TIKMWDVSTGMCLMTLVGHDNWV---------RGVLFHS---GGK-FILSCADDKTLRVW 365 (410)
T ss_dssp ------CCEEEEEET-TS--EEEEEETTTTEEEEEEECCSSCE---------EEEEECS---SSS-CEEEEETTTEEEEE
T ss_pred cccCCCCCEEEEEeC-CC--eEEEEECCCCceEEEEECCCCcE---------EEEEEcC---CCC-EEEEEeCCCeEEEE
Confidence 444444444 34 4667788877644332 221111 1234442 444 44566667766666
Q ss_pred EEECCCCc-eEEeccCCCceEEe-eEeCCEEEEEEe
Q 004735 385 ILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 385 ~~~~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~ 418 (732)
+..+++ ...+......|..+ ..+++.+++.++
T Consensus 366 --d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 366 --DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp --CCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred --ECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEe
Confidence 555554 45565555667777 344444554444
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-08 Score=102.44 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCCCCccC----CcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc
Q 004735 493 EKPPLLVKSHGGPTSEAR----GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 568 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~----~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 568 (732)
+..|.||++||....... ..|..+.+.|.++||.|+++|++|.+..... ....+++.+.++.+++.
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g~g~s~~~----------~~~~~~l~~~i~~~l~~ 75 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGP----------NGRGEQLLAYVKTVLAA 75 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCSSCCSSST----------TSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCC----------CCCHHHHHHHHHHHHHH
Confidence 345789999997544321 4566788999999999999999976543111 12245555555555544
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
. +.+++.|+|||+||.++..++. +|++++++|.+++..
T Consensus 76 ~--~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 76 T--GATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp H--CCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred h--CCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 2 3468999999999999999988 899999999998864
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=111.15 Aligned_cols=126 Identities=16% Similarity=0.121 Sum_probs=85.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHH-CCCEEEEEcCCCC-CCCChhhHHhhccCCC
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYGGS-TGYGREFRERLLGRWG 551 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~-~G~~v~~~d~rG~-~g~g~~~~~~~~~~~~ 551 (732)
+...+|.|.. ..++.|+||++|||++....... ......|++ .|++|+.+|||.. -|+..... .....+
T Consensus 93 l~lnv~~P~~------~~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~--~~~~~~ 164 (529)
T 1p0i_A 93 LYLNVWIPAP------KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPG--NPEAPG 164 (529)
T ss_dssp CEEEEEEESS------CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTT--CTTSCS
T ss_pred CeEEEeeCCC------CCCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCCC--CCCCcC
Confidence 4445677765 12567999999998754333221 122345565 7999999999932 11111000 000112
Q ss_pred cccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCcC
Q 004735 552 IVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA 608 (732)
Q Consensus 552 ~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~~ 608 (732)
...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++.. ..+|+++|+.+|..
T Consensus 165 n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 227 (529)
T 1p0i_A 165 NMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 227 (529)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred cccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCcc
Confidence 23478999999999875 35799999999999999999888873 46899999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-06 Score=93.35 Aligned_cols=239 Identities=6% Similarity=-0.043 Sum_probs=142.0
Q ss_pred CceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
...+.++++.++... .++.|+++++.+ +....+.... ........+|+|||+.|+....+ ..|.++
T Consensus 96 ~~~~~~s~~~l~~~~-~d~~v~lw~~~~--~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d---------g~i~iw 161 (401)
T 4aez_A 96 LNLLDWSNLNVVAVA-LERNVYVWNADS--GSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN---------GLVDIY 161 (401)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTT--CCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT---------SCEEEE
T ss_pred EEEEeecCCCEEEEE-CCCeEEEeeCCC--CcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC---------CeEEEE
Confidence 345667776655443 577899999987 6554433221 13345678899999987666542 478888
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|+.+++. ...+......+....| +++.|+..+ ....|.++|+...+.. ...+.+.. ..+..+
T Consensus 162 d~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~--------~dg~i~i~d~~~~~~~--~~~~~~~~----~~v~~~ 223 (401)
T 4aez_A 162 DVESQTK--LRTMAGHQARVGCLSW--NRHVLSSGS--------RSGAIHHHDVRIANHQ--IGTLQGHS----SEVCGL 223 (401)
T ss_dssp ETTTCCE--EEEECCCSSCEEEEEE--ETTEEEEEE--------TTSEEEEEETTSSSCE--EEEEECCS----SCEEEE
T ss_pred ECcCCeE--EEEecCCCCceEEEEE--CCCEEEEEc--------CCCCEEEEecccCcce--eeEEcCCC----CCeeEE
Confidence 9987761 3334434444555666 567776555 2345899998732332 34444444 567889
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEE--ECCEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR--QNGRSYL 383 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~--~~g~~~l 383 (732)
.|+|||+++++... .+ .|.++|+.+++..... .....+....|++ ++..++++.. .++ .|
T Consensus 224 ~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p------------~~~~ll~~~~gs~d~--~i 286 (401)
T 4aez_A 224 AWRSDGLQLASGGN-DN--VVQIWDARSSIPKFTKTNHNAAVKAVAWCP------------WQSNLLATGGGTMDK--QI 286 (401)
T ss_dssp EECTTSSEEEEEET-TS--CEEEEETTCSSEEEEECCCSSCCCEEEECT------------TSTTEEEEECCTTTC--EE
T ss_pred EEcCCCCEEEEEeC-CC--eEEEccCCCCCccEEecCCcceEEEEEECC------------CCCCEEEEecCCCCC--EE
Confidence 99999995555444 34 4666788776554332 3333333344443 5666666654 344 46
Q ss_pred EEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEe-CCCCCcEEEEEEcCCCcc
Q 004735 384 GILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGA-SGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 384 y~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~-~~~~~~~ly~~dl~~~~~ 436 (732)
+++++.+++..........+..+ ..+++..++.++ ..+ ..++++|+.+++.
T Consensus 287 ~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d--g~i~v~~~~~~~~ 339 (401)
T 4aez_A 287 HFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD--NNLSIWSYSSSGL 339 (401)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT--CEEEEEEEETTEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC--CcEEEEecCCccc
Confidence 66688777654433444556666 344444544443 233 4677777777654
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=111.35 Aligned_cols=126 Identities=21% Similarity=0.208 Sum_probs=85.8
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHH-HCCCEEEEEcCCCC-CCCChhhHHhhccCCC
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWT-SRGWAFVDVNYGGS-TGYGREFRERLLGRWG 551 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~-~~G~~v~~~d~rG~-~g~g~~~~~~~~~~~~ 551 (732)
+...+|.|.. ..++.|+||++|||++....... ......|+ +.|++|+.+|||-. -|+.... ......+
T Consensus 95 l~lnv~~P~~------~~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~~~ 166 (537)
T 1ea5_A 95 LYLNIWVPSP------RPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALH--GSQEAPG 166 (537)
T ss_dssp CEEEEEECSS------CCSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCT--TCSSSCS
T ss_pred CeEEEeccCC------CCCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccCC--CCCCCcC
Confidence 4445677865 13568999999998764433321 12234555 77999999999932 1111100 0001112
Q ss_pred cccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCcC
Q 004735 552 IVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA 608 (732)
Q Consensus 552 ~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~~ 608 (732)
...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++.. ..+|+++|+.+|..
T Consensus 167 n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 229 (537)
T 1ea5_A 167 NVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 229 (537)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCc
Confidence 23489999999999875 35699999999999999999888773 56899999999864
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-09 Score=118.35 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=81.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-------ccHHHHHHHH-CCCEEEEEcCCCC-CCCChhhHHh
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-------LNLSIQYWTS-RGWAFVDVNYGGS-TGYGREFRER 545 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-------~~~~~~~l~~-~G~~v~~~d~rG~-~g~g~~~~~~ 545 (732)
+...+|.|.... ...++.|+||++|||++...... +......|+. .|++|+.+|||-. -|+.......
T Consensus 81 l~lnv~~P~~~~---~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~~~~~ 157 (579)
T 2bce_A 81 LYLNIWVPQGRK---EVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDSN 157 (579)
T ss_dssp CEEEEEEEECSS---SCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTT
T ss_pred CEEEEEECCCCC---CCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCcCCCCC
Confidence 444566775421 01356799999999865432221 0111234544 5799999999942 1211110001
Q ss_pred hccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCc
Q 004735 546 LLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGV 607 (732)
Q Consensus 546 ~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~ 607 (732)
.. +...+.|+.++++|+.++ ...|++||.|+|+|+||+++..++. ...+|+++|+.+|.
T Consensus 158 ~p---gn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 158 LP---GNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred CC---CccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 11 112378999999999774 4579999999999999999988776 35689999999874
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.5e-08 Score=100.04 Aligned_cols=94 Identities=7% Similarity=0.000 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.++ ....|..++..|. +.|+++|+++... ...++++.+.+..++.... ..+
T Consensus 24 ~~~l~~~hg~~~--~~~~~~~~~~~L~---~~v~~~d~~~~~~--------------~~~~~~~a~~~~~~i~~~~-~~~ 83 (283)
T 3tjm_A 24 ERPLFLVHPIEG--STTVFHSLASRLS---IPTYGLQCTRAAP--------------LDSIHSLAAYYIDCIRQVQ-PEG 83 (283)
T ss_dssp SCCEEEECCTTC--CSGGGHHHHHHCS---SCEEEECCCTTSC--------------CSCHHHHHHHHHHHHTTTC-CSS
T ss_pred CCeEEEECCCCC--CHHHHHHHHHhcC---ceEEEEecCCCCC--------------CCCHHHHHHHHHHHHHHhC-CCC
Confidence 466889999744 3456666676664 8999999964211 1224444444433333321 236
Q ss_pred cEEEEEcChHHHHHHHHHh-C---CCcce---EEEeecCcC
Q 004735 575 RLCITGGSAGGYTTLAALA-F---RDTFK---AGASLYGVA 608 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~---p~~~~---a~v~~~~~~ 608 (732)
++.++||||||.+++.++. . +++++ .++++++..
T Consensus 84 ~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~~ 124 (283)
T 3tjm_A 84 PYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGSP 124 (283)
T ss_dssp CCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCCT
T ss_pred CEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCCc
Confidence 8999999999999998886 3 88888 888887754
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=113.27 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcc-cHHHHHHHH-CCCEEEEEcCC-CCCCCChh---hHH-hhccCCCcccHHHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGIL-NLSIQYWTS-RGWAFVDVNYG-GSTGYGRE---FRE-RLLGRWGIVDVNDCCSCATF 564 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~-~G~~v~~~d~r-G~~g~g~~---~~~-~~~~~~~~~~~~D~~~~i~~ 564 (732)
.++.|+||++|||++....... ......|+. .|++|+.+||| |.-|+... +.. ......+...+.|+.++++|
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w 217 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW 217 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence 4568999999998765433321 112244554 69999999999 32222110 000 00111122348899999999
Q ss_pred HHhc---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCcC
Q 004735 565 LVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA 608 (732)
Q Consensus 565 l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~~ 608 (732)
+.++ ...|+++|.|+|+|+||.+++.++.. ..+|+++|+.+|..
T Consensus 218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 9886 24689999999999999999888763 46899999999854
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.72 E-value=9.7e-07 Score=99.67 Aligned_cols=202 Identities=9% Similarity=0.072 Sum_probs=125.9
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC----CccccEEcccCCCc-eeccccCC--CCCeEEEEecc
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ----NIQEPKVLVSGSDF-YAFPRMDP--RGERMAWIEWH 264 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~----~~~~~~~lt~~~~~-~~~p~~SP--DG~~la~~~~~ 264 (732)
.....+|||||++|++..+ ..|.+++++++ +. ...+...... +...+||| ||++|+..+.
T Consensus 20 ~v~~~~~spdg~~l~~~~~----------~~v~v~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~- 86 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPCG----------KSAFVRCLDDGDSKVPP--VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE- 86 (615)
T ss_dssp CCCCCEEETTTTEEEEEET----------TEEEEEECCSSCCSSCS--EEEECTTTTSCEEEEEECSSTTCCEEEEEET-
T ss_pred ceeEEEECCCCCEEEEecC----------CeEEEEECCCCCCcccc--ceEEecCCCceEEEEEECcCCCCCEEEEecC-
Confidence 3466789999999887753 47888899876 41 4455555556 77899999 9999887652
Q ss_pred CCCCCCCccEEEEEEecCCC------ceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeE
Q 004735 265 HPNMPWDKAELWVGYISENG------DVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~~g------~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
...|.++|+. +| +......+.... ..+..+.|+|||+ ++...........|+.+| .+...
T Consensus 87 -------dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~ 153 (615)
T 1pgu_A 87 -------SGKVIVWGWT-FDKESNSVEVNVKSEFQVLA----GPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSL 153 (615)
T ss_dssp -------TSEEEEEEEE-EEGGGTEEEEEEEEEEECCS----SCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEE
T ss_pred -------CCEEEEEeCC-CCcccccccccccchhhccc----ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcc
Confidence 3458888886 44 333344455444 5678899999999 655554423345788777 23333
Q ss_pred EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEeccCCC---ceEEe-eEeC-C
Q 004735 338 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFT---DIDNI-TLGN-D 411 (732)
Q Consensus 338 ~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~~~---~v~~~-~~~~-~ 411 (732)
..+......+. .+.|.+ +++.++++...++.-.+| +..+++. ..+..... .+..+ ..++ +
T Consensus 154 ~~~~~~~~~v~---------~~~~~~---~~~~~l~~~~~d~~v~vw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (615)
T 1pgu_A 154 GEVSGHSQRIN---------ACHLKQ---SRPMRSMTVGDDGSVVFY--QGPPFKFSASDRTHHKQGSFVRDVEFSPDSG 219 (615)
T ss_dssp EECCSCSSCEE---------EEEECS---SSSCEEEEEETTTEEEEE--ETTTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred eeeecCCccEE---------EEEECC---CCCcEEEEEeCCCcEEEE--eCCCcceeeeecccCCCCceEEEEEECCCCC
Confidence 33332222222 234443 565566666667766665 6666554 34444444 57776 4445 5
Q ss_pred EEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 412 CLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 412 ~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+++.++.. ..|+++|+.+++.
T Consensus 220 ~~l~~~~~d---g~i~vwd~~~~~~ 241 (615)
T 1pgu_A 220 EFVITVGSD---RKISCFDGKSGEF 241 (615)
T ss_dssp CEEEEEETT---CCEEEEETTTCCE
T ss_pred CEEEEEeCC---CeEEEEECCCCCE
Confidence 666665543 3688888887764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-06 Score=94.15 Aligned_cols=238 Identities=11% Similarity=0.009 Sum_probs=135.8
Q ss_pred CceeEEECC-E-EEEEeCCCCeEEEEeC----CCCCCC-------ceecCCCCCC------CCeEeeceeecCCCCEEEE
Q 004735 147 GGAFRIFGD-T-VIFSNYKDQRLYKHSI----DSKDSS-------PLPITPDYGE------PLVSYADGIFDPRFNRYVT 207 (732)
Q Consensus 147 ~~~~~~~~~-~-i~f~~~~~~~l~~~d~----~~~~~~-------~~~lt~~~~~------~~~~~~~~~~spdG~~l~~ 207 (732)
+.+..++++ . ++++...++.|.++++ .+ +. ...+...... ........+|+|||++|+.
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQE--GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCC--ccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 445555533 3 5555556788999998 76 44 2333321100 1224567789999998776
Q ss_pred EEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCcee
Q 004735 208 VREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY 287 (732)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~ 287 (732)
...+ ..|.+++..+.. ...+......+....|+|||+.|+..+. ...|.++|+. +++.
T Consensus 126 ~~~d---------g~i~i~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------d~~i~iwd~~-~~~~- 183 (425)
T 1r5m_A 126 GVEN---------GELRLWNKTGAL---LNVLNFHRAPIVSVKWNKDGTHIISMDV--------ENVTILWNVI-SGTV- 183 (425)
T ss_dssp EETT---------SCEEEEETTSCE---EEEECCCCSCEEEEEECTTSSEEEEEET--------TCCEEEEETT-TTEE-
T ss_pred EeCC---------CeEEEEeCCCCe---eeeccCCCccEEEEEECCCCCEEEEEec--------CCeEEEEECC-CCcE-
Confidence 6542 467778865544 5556555566778899999999887662 2348899987 6654
Q ss_pred eeEEecCCCCCcccc---------------CcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCc
Q 004735 288 KRVCVAGFDPTIVES---------------PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPL 351 (732)
Q Consensus 288 ~~~~~~~~~~~~~~~---------------~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~ 351 (732)
...+.... .. +..+.|++++.++... . . ..|+.+|+.+++..... .....+..
T Consensus 184 -~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--g~i~~~d~~~~~~~~~~~~~~~~i~~-- 252 (425)
T 1r5m_A 184 -MQHFELKE----TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG-P-K--GAIFVYQITEKTPTGKLIGHHGPISV-- 252 (425)
T ss_dssp -EEEECCC-------------------CCCBSCCEEEETTEEEEEC-G-G--GCEEEEETTCSSCSEEECCCSSCEEE--
T ss_pred -EEEeeccc----cCccceeeccccCCcceeeEEEEcCCCEEEEEc-C-C--CeEEEEEcCCCceeeeeccCCCceEE--
Confidence 33333322 22 6788999987644333 2 2 34777788776543332 22222222
Q ss_pred eeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEE
Q 004735 352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKV 429 (732)
Q Consensus 352 w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~ 429 (732)
+.|.+ +++. +++...++.-.+| ++.+++ ...+......+..+ ..+++ .++.++.. ..|+++
T Consensus 253 -------~~~~~---~~~~-l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d---~~i~i~ 315 (425)
T 1r5m_A 253 -------LEFND---TNKL-LLSASDDGTLRIW--HGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMD---GSVRLW 315 (425)
T ss_dssp -------EEEET---TTTE-EEEEETTSCEEEE--CSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETT---SEEEEE
T ss_pred -------EEECC---CCCE-EEEEcCCCEEEEE--ECCCCccceEecCCCccEEEEEECCCC-EEEEEeCC---CcEEEE
Confidence 33432 5554 4455556654444 665554 34454455567776 44455 44444432 478888
Q ss_pred EcCCCcc
Q 004735 430 TLDDHKL 436 (732)
Q Consensus 430 dl~~~~~ 436 (732)
|+.+++.
T Consensus 316 d~~~~~~ 322 (425)
T 1r5m_A 316 SLKQNTL 322 (425)
T ss_dssp ETTTTEE
T ss_pred ECCCCcE
Confidence 8877653
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-07 Score=98.29 Aligned_cols=195 Identities=8% Similarity=-0.089 Sum_probs=116.3
Q ss_pred eEEECCEEEEEe-CCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 150 FRIFGDTVIFSN-YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 150 ~~~~~~~i~f~~-~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
|++++..+++.. ..++.|.++|+.+ ++....... .....+.+|||||++++...+ ..+.+++.
T Consensus 141 fSpDg~~la~as~~~d~~i~iwd~~~--~~~~~~~~~----~~~V~~v~fspdg~~l~s~s~----------~~~~~~~~ 204 (365)
T 4h5i_A 141 ISREGTVAAIASSKVPAIMRIIDPSD--LTEKFEIET----RGEVKDLHFSTDGKVVAYITG----------SSLEVIST 204 (365)
T ss_dssp ECTTSSCEEEEESCSSCEEEEEETTT--TEEEEEEEC----SSCCCEEEECTTSSEEEEECS----------SCEEEEET
T ss_pred EcCCCCEEEEEECCCCCEEEEeECCC--CcEEEEeCC----CCceEEEEEccCCceEEeccc----------eeEEEEEe
Confidence 344444555433 3567899999987 544332222 223577889999998766543 34666777
Q ss_pred CCCCccccE-Ecc--cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCcee--eeEEecCCCCCccccC
Q 004735 229 NGQNIQEPK-VLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY--KRVCVAGFDPTIVESP 303 (732)
Q Consensus 229 ~~~~~~~~~-~lt--~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~--~~~~~~~~~~~~~~~~ 303 (732)
.+++ .. ..+ .....+...+|||||+.|+..+.+... ...++.+++. .+... ....+.+.. ..+
T Consensus 205 ~~~~---~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~----~~~i~~~~~~-~~~~~~~~~~~~~~~~----~~V 272 (365)
T 4h5i_A 205 VTGS---CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK----GIVLTKISIK-SGNTSVLRSKQVTNRF----KGI 272 (365)
T ss_dssp TTCC---EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC----CEEEEEEEEE-TTEEEEEEEEEEESSC----SCE
T ss_pred ccCc---ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc----eeEEeecccc-cceecceeeeeecCCC----CCe
Confidence 6665 22 222 223345678999999999877744422 3457778876 44322 223344443 556
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEE-Eecc-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
..++|||||+++.+... .+ .|.++|..+++.. .+.. ....+. .+.|.| +++ ++++...|+.-
T Consensus 273 ~~~~~Spdg~~lasgs~-D~--~V~iwd~~~~~~~~~~~~gH~~~V~---------~v~fSp---dg~-~laS~S~D~tv 336 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASN-DN--SIALVKLKDLSMSKIFKQAHSFAIT---------EVTISP---DST-YVASVSAANTI 336 (365)
T ss_dssp EEEEECTTSCEEEEEET-TS--CEEEEETTTTEEEEEETTSSSSCEE---------EEEECT---TSC-EEEEEETTSEE
T ss_pred EeEEECCCCCceEEEcC-CC--EEEEEECCCCcEEEEecCcccCCEE---------EEEECC---CCC-EEEEEeCCCeE
Confidence 78899999995545444 33 4667788887754 3332 222222 344543 555 55566678888
Q ss_pred EEEEEEC
Q 004735 382 YLGILDD 388 (732)
Q Consensus 382 ~ly~~~~ 388 (732)
+||.+..
T Consensus 337 rvw~ip~ 343 (365)
T 4h5i_A 337 HIIKLPL 343 (365)
T ss_dssp EEEECCT
T ss_pred EEEEcCC
Confidence 8887643
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.9e-08 Score=102.00 Aligned_cols=196 Identities=12% Similarity=0.090 Sum_probs=108.6
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHH-HHHHHhcCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADE 573 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~ 573 (732)
.|.|+++||.++. ...|..++..| ..+|.|+.+|++|.++ +.. .. ..++++.+. ++.+.+.. ..
T Consensus 101 ~~~l~~lhg~~~~--~~~~~~l~~~L-~~~~~v~~~d~~g~~~---~~~--~~-----~~~~~~a~~~~~~i~~~~--~~ 165 (329)
T 3tej_A 101 GPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIIGIQSPRPNG---PMQ--TA-----ANLDEVCEAHLATLLEQQ--PH 165 (329)
T ss_dssp SCEEEEECCTTSC--CGGGGGGGGTS-CTTCEEEEECCCTTTS---HHH--HC-----SSHHHHHHHHHHHHHHHC--SS
T ss_pred CCcEEEEeCCccc--chHHHHHHHhc-CCCCeEEEeeCCCCCC---CCC--CC-----CCHHHHHHHHHHHHHHhC--CC
Confidence 4789999997443 45555555555 5689999999987532 211 11 123443333 33333321 23
Q ss_pred CcEEEEEcChHHHHHHHHHh----CCCcceEEEeecCcCCHHHHHhh-------------cchhhhhhhhhhcC--Chh-
Q 004735 574 KRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLSMLRAE-------------THKFESRYIDNLVG--SEK- 633 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~~d~~~~~~~-------------~~~~~~~~~~~~~~--~~~- 633 (732)
+++.++|||+||.+++.++. ++++++.++++.+.......... .......+...... ..+
T Consensus 166 ~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (329)
T 3tej_A 166 GPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTSTEL 245 (329)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCCSCCHH
T ss_pred CCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhccccccHHH
Confidence 58999999999999988775 79999999998876554321100 00000001100000 000
Q ss_pred ------hhhhc---CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc-CCCcccHHHHH
Q 004735 634 ------DYYEK---SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-FRKAENIKFTL 703 (732)
Q Consensus 634 ------~~~~~---sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~~~~~~~~~~~ 703 (732)
.+... -.......+.+|++++.|++|..++......+ +..-.+++++.++ ++|. +..++......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~~~~d~~~~~~~~~~w----~~~~~~~~~~~v~-g~H~~~~~~~~~~~ia 320 (329)
T 3tej_A 246 FTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAW----SPWIAELDIYRQD-CAHVDIISPGTFEKIG 320 (329)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEGGGCCTTCCHHHHH----TTTEEEEEEEEES-SCGGGGGSTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEeccCCCCCCCchhhH----HHhcCCcEEEEec-CChHHhCCChHHHHHH
Confidence 11100 00112345678999999999987665443333 2222367888998 5675 33434444455
Q ss_pred HHHHHHH
Q 004735 704 EQQMVFF 710 (732)
Q Consensus 704 ~~~~~fl 710 (732)
..+.+|+
T Consensus 321 ~~l~~~L 327 (329)
T 3tej_A 321 PIIRATL 327 (329)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4555444
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-06 Score=87.89 Aligned_cols=203 Identities=8% Similarity=0.079 Sum_probs=111.8
Q ss_pred CceeEEECCEEEEEeCCCCeEEEEeCCCCCCCce---ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
+.++.++++ ++++...++.|.++++.+ +..+ .+... .+.......+|+|+|+.|+....+ ..|
T Consensus 17 v~~~~~s~~-~las~~~D~~i~lw~~~~--~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s~D---------~~v 82 (330)
T 2hes_X 17 IWSFDFSQG-ILATGSTDRKIKLVSVKY--DDFTLIDVLDET--AHKKAIRSVAWRPHTSLLAAGSFD---------STV 82 (330)
T ss_dssp EEEEEEETT-EEEEEESSSCEEEEECSS--SCCEEEEEECTT--CCCSCEEEEEECTTSSEEEEEETT---------SCE
T ss_pred eeeeccCCC-EEEEEcCCCEEEEEEecC--CCeEEEEEEecC--CccCCEEEEEECCCCCEEEEEeCC---------CcE
Confidence 445667777 556666788899999875 4322 22111 013345678899999986655542 356
Q ss_pred EEEEcCCCC-----ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecCCCC
Q 004735 224 VAIALNGQN-----IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDP 297 (732)
Q Consensus 224 ~~~d~~~~~-----~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~~~~ 297 (732)
.++++..+. ......+......+...+|||||++|+-.+.+ ..|.++|+...+. ...+..+.+..
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D--------~~v~iwd~~~~~~~~~~~~~~~~h~- 153 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD--------KSVWIWETDESGEEYECISVLQEHS- 153 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT--------SCEEEEECCTTCCCCEEEEEECCCS-
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC--------CEEEEEeccCCCCCeEEEEEeccCC-
Confidence 666764321 00012233334456678999999998876632 3388889842332 22244455554
Q ss_pred CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCC-CEEEEEEE
Q 004735 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEK-NLIACSYR 376 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~l~~~s~ 376 (732)
..+..+.|+|||+++++... .+.-+|| +..++..+.+..... .....|. +.|.+ ++ ..++++..
T Consensus 154 ---~~v~~v~~~p~~~~l~s~s~-D~~i~iW--~~~~~~~~~~~~~~~-h~~~v~~-----~~~~~---~~~~~~l~s~s 218 (330)
T 2hes_X 154 ---QDVKHVIWHPSEALLASSSY-DDTVRIW--KDYDDDWECVAVLNG-HEGTVWS-----SDFDK---TEGVFRLCSGS 218 (330)
T ss_dssp ---SCEEEEEECSSSSEEEEEET-TSCEEEE--EEETTEEEEEEEECC-CSSCEEE-----EEECC---SSSSCEEEEEE
T ss_pred ---CceEEEEECCCCCEEEEEcC-CCeEEEE--ECCCCCeeEEEEccC-CCCcEEE-----EEecC---CCCeeEEEEEe
Confidence 56778999999995555555 4555555 444443222221110 0122222 23432 32 34556666
Q ss_pred ECCEEEEEEEE
Q 004735 377 QNGRSYLGILD 387 (732)
Q Consensus 377 ~~g~~~ly~~~ 387 (732)
.++.-+||.+.
T Consensus 219 ~D~~v~iw~~~ 229 (330)
T 2hes_X 219 DDSTVRVWKYM 229 (330)
T ss_dssp TTSCEEEEEEE
T ss_pred CCCeEEEEEec
Confidence 78888888665
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-08 Score=107.73 Aligned_cols=111 Identities=11% Similarity=-0.051 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCCCCCccCCcccH-HHHHH-HHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNL-SIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~-~~~~l-~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
...|+||++||..... ...|.. ++..| ...+|.|+++|++|.+... +...... -....+++.+.+++|.++..
T Consensus 67 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~~~--~~~v~~~la~ll~~L~~~~g 141 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSRTA--YSQASQN--VRIVGAEVAYLVGVLQSSFD 141 (449)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHSSC--HHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccCCc--cHHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 4468999999974332 233443 44444 4579999999999754322 1111100 00113567777888865444
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
++.+++.|+|||+||.+|+.++. +|++++.++++.|..
T Consensus 142 ~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 142 YSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 56789999999999999999998 999999999888754
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.9e-07 Score=92.42 Aligned_cols=203 Identities=10% Similarity=0.112 Sum_probs=125.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeE
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l 167 (732)
..+.++.|++ ++.+||++... + .|++.+.+++ ..+.+.... +....+.++.+.++.|+|.+...+.|
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~---~--~I~r~~~~g~-~~~~~~~~~------~~~p~glavd~~~g~ly~~d~~~~~I 140 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTL---D--RILRANLNGS-NVEEVVSTG------LESPGGLAVDWVHDKLYWTDSGTSRI 140 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTT---T--EEEEEETTSC-SCEEEECSS------CSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEEeccccEEEEEeccC---C--ceEEEecCCC-CceEEEeCC------CCCccEEEEecCCCeEEEEcCCCCeE
Confidence 4678899998 99999998733 3 4777766632 333333221 11112223333467899998888899
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-CCCce
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFY 246 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~~~~~ 246 (732)
+++++++ ...+.+.... .....+.+++|++..|+++.... ...|+++++++.. .+.+.. +-..-
T Consensus 141 ~~~~~dG--~~~~~l~~~~---l~~P~~iavdp~~g~ly~td~~~-------~~~I~r~~~dG~~---~~~~~~~~~~~P 205 (349)
T 3v64_C 141 EVANLDG--AHRKVLLWQS---LEKPRAIALHPMEGTIYWTDWGN-------TPRIEASSMDGSG---RRIIADTHLFWP 205 (349)
T ss_dssp EEEETTS--CSCEEEECTT---CSCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCS---CEESCCSSCSCE
T ss_pred EEEcCCC--CceEEEEeCC---CCCcceEEEecCcCeEEEeccCC-------CCEEEEEeCCCCC---cEEEEECCCCCc
Confidence 9999986 5444444321 12346778999888876664322 2689999999876 555543 33445
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
.+.+++|++++|+|+.+. ...|++++++ ++.. ..++.... ..+..++. .++.||++ +. +...
T Consensus 206 nGla~d~~~~~lY~aD~~-------~~~I~~~~~d-G~~~--~~~~~~~~----~~P~giav-~~~~ly~t-d~--~~~~ 267 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAK-------HHVIERANLD-GSHR--KAVISQGL----PHPFAITV-FEDSLYWT-DW--HTKS 267 (349)
T ss_dssp EEEEEETTTTEEEEEETT-------TTEEEEEETT-SCSC--EEEECSSC----SSEEEEEE-ETTEEEEE-ET--TTTE
T ss_pred ceEEEeCCCCEEEEEECC-------CCEEEEEeCC-CCce--EEEEeCCC----CCceEEEE-ECCEEEEe-cC--CCCe
Confidence 678999999999888632 3569999987 3222 22333222 34445556 23335554 43 4456
Q ss_pred EEEEeccCCe
Q 004735 327 LHKWIESNNE 336 (732)
Q Consensus 327 l~~~d~~~g~ 336 (732)
|.+++..+|+
T Consensus 268 V~~~~~~~G~ 277 (349)
T 3v64_C 268 INSANKFTGK 277 (349)
T ss_dssp EEEEETTTCC
T ss_pred EEEEEccCCC
Confidence 8888854554
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-06 Score=87.85 Aligned_cols=235 Identities=10% Similarity=0.035 Sum_probs=136.9
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+..++++ .++++...++.|.++|+.+ +. ...+... ........|+|+|++|+....+ ..+.++
T Consensus 60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~--~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~d---------~~v~iw 124 (340)
T 1got_B 60 AMHWGTDSRLLLSASQDGKLIIWDSYT--TNKVHAIPLR----SSWVMTCAYAPSGNYVACGGLD---------NICSIY 124 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTT--CCEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------CEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCC--CCcceEeecC----CccEEEEEECCCCCEEEEEeCC---------CeEEEE
Confidence 3444433 5566777788999999886 43 2333332 2334567899999987665442 467778
Q ss_pred EcCCCCc--cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 227 ALNGQNI--QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 227 d~~~~~~--~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
++.+++. ...+.+...........|+||++ |+..+. ...|.++|+. +++. ...+.+.. ..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~--------d~~i~~wd~~-~~~~--~~~~~~h~----~~v~ 188 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG--------DTTCALWDIE-TGQQ--TTTFTGHT----GDVM 188 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEET--------TSCEEEEETT-TTEE--EEEECCCS----SCEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEEC--------CCcEEEEECC-CCcE--EEEEcCCC----CceE
Confidence 8876431 00122333445566678899886 554442 2348899998 6754 45555554 5677
Q ss_pred CceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEE
Q 004735 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (732)
Q Consensus 305 ~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~l 383 (732)
.+.|+|||+++++... .+. |.++|+.+++..... .....+. .+.|.+ +++. +++...++.-.|
T Consensus 189 ~~~~~~~~~~l~sg~~-d~~--v~~wd~~~~~~~~~~~~h~~~v~---------~v~~~p---~~~~-l~s~s~d~~v~i 252 (340)
T 1got_B 189 SLSLAPDTRLFVSGAC-DAS--AKLWDVREGMCRQTFTGHESDIN---------AICFFP---NGNA-FATGSDDATCRL 252 (340)
T ss_dssp EEEECTTSSEEEEEET-TSC--EEEEETTTCSEEEEECCCSSCEE---------EEEECT---TSSE-EEEEETTSCEEE
T ss_pred EEEECCCCCEEEEEeC-CCc--EEEEECCCCeeEEEEcCCcCCEE---------EEEEcC---CCCE-EEEEcCCCcEEE
Confidence 8899999996555554 444 556677776544332 2222222 234442 5554 455556776666
Q ss_pred EEEECCCCceE-EeccC--CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 384 GILDDFGHSLS-LLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 384 y~~~~~~~~~~-~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
| |+.+++.. .+... ...+..+ ..+++.+++.++.. ..+.++|+.+++
T Consensus 253 w--d~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---~~i~vwd~~~~~ 303 (340)
T 1got_B 253 F--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD---FNCNVWDALKAD 303 (340)
T ss_dssp E--ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCC
T ss_pred E--ECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCC---CeEEEEEcccCc
Confidence 5 66665432 23222 2245666 44556666665543 468888877655
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-07 Score=102.07 Aligned_cols=199 Identities=9% Similarity=0.058 Sum_probs=120.7
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
...+|||||++|++... ..++++++.+++. ...+......+...+|||||++||-.+. ..
T Consensus 22 ~~~~~spdg~~l~~~~~----------~~v~l~~~~~~~~--~~~~~~h~~~v~~~~~spdg~~lasg~~--------d~ 81 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCNG----------TSVYTVPVGSLTD--TEIYTEHSHQTTVAKTSPSGYYCASGDV--------HG 81 (611)
T ss_dssp CCCEECTTSSEEEEEET----------TEEEEEETTCSSC--CEEECCCSSCEEEEEECTTSSEEEEEET--------TS
T ss_pred eEEeeCCCCCEEEeCCC----------CEEEEecCCCccc--CeEecCCCCceEEEEECCCCcEEEEEeC--------CC
Confidence 45679999999887653 4788889876551 4455555556777899999999987662 34
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCce
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 352 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 352 (732)
.|.++|+. +++......+.+.. ..+..++|+|||+ |+...........++.+|.. .....+......+
T Consensus 82 ~v~lWd~~-~~~~~~~~~~~~~~----~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~-~~~~~l~gh~~~v----- 150 (611)
T 1nr0_A 82 NVRIWDTT-QTTHILKTTIPVFS----GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNGNLTGQARAM----- 150 (611)
T ss_dssp EEEEEESS-STTCCEEEEEECSS----SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCBCCCCCSSCE-----
T ss_pred CEEEeECC-CCcceeeEeecccC----CceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-CCcceecCCCCCc-----
Confidence 58888986 44332233444444 5678899999999 55444331223467777632 2222222221111
Q ss_pred eecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
..+.|.+ ++...+++...++.-.|| +..+++. ..+......|..+ ..+++.+++.++.. ..+.++|
T Consensus 151 ----~~v~f~p---~~~~~l~s~s~D~~v~lw--d~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D---~~i~lwd 218 (611)
T 1nr0_A 151 ----NSVDFKP---SRPFRIISGSDDNTVAIF--EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD---GTIVLYN 218 (611)
T ss_dssp ----EEEEECS---SSSCEEEEEETTSCEEEE--ETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT---SCEEEEE
T ss_pred ----eEEEECC---CCCeEEEEEeCCCeEEEE--ECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC---CcEEEEE
Confidence 2334443 555556677777777777 5555443 3444455567777 45556666655543 3577777
Q ss_pred cCCCc
Q 004735 431 LDDHK 435 (732)
Q Consensus 431 l~~~~ 435 (732)
+.+++
T Consensus 219 ~~~g~ 223 (611)
T 1nr0_A 219 GVDGT 223 (611)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 76665
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-06 Score=90.39 Aligned_cols=203 Identities=12% Similarity=0.026 Sum_probs=114.6
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
....+|||||++|+....+ ..|.++|+.+++ ... +......+....|+|||++|+..+ .
T Consensus 126 v~~v~~s~dg~~l~s~~~d---------~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~p~~~~l~s~s--------~ 185 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAED---------RLIRIWDIENRK---IVMILQGHEQDIYSLDYFPSGDKLVSGS--------G 185 (393)
T ss_dssp EEEEEECTTSSEEEEEETT---------SCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEE--------T
T ss_pred EEEEEECCCCCEEEEEcCC---------CeEEEEECCCCc---EEEEEccCCCCEEEEEEcCCCCEEEEec--------C
Confidence 4577899999987665442 478888998876 433 333445567789999999987665 2
Q ss_pred ccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC-CCcEEEEEeccCCeeeEEEEeccCCeEEE-ecccccc-cC
Q 004735 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAE-FS 348 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~-~~ 348 (732)
...|.++|+. +++. ...+... ..+....|+| ||+++++... .+. |..+|..+++... +...... ..
T Consensus 186 d~~v~iwd~~-~~~~--~~~~~~~-----~~v~~~~~~~~~~~~l~~~s~-d~~--v~iwd~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1erj_A 186 DRTVRIWDLR-TGQC--SLTLSIE-----DGVTTVAVSPGDGKYIAAGSL-DRA--VRVWDSETGFLVERLDSENESGTG 254 (393)
T ss_dssp TSEEEEEETT-TTEE--EEEEECS-----SCEEEEEECSTTCCEEEEEET-TSC--EEEEETTTCCEEEEEC------CC
T ss_pred CCcEEEEECC-CCee--EEEEEcC-----CCcEEEEEECCCCCEEEEEcC-CCc--EEEEECCCCcEEEeecccccCCCC
Confidence 3458889998 6754 2333332 3456788999 7885555544 444 5556777765432 2111000 00
Q ss_pred CCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC----------Cc-eEEeccCCCceEEe-eEeCCEEEEE
Q 004735 349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG----------HS-LSLLDIPFTDIDNI-TLGNDCLFVE 416 (732)
Q Consensus 349 ~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~----------~~-~~~lt~~~~~v~~~-~~~~~~~~~~ 416 (732)
... ....+.|.+ +++ ++++...++.-.||-+.... +. ...+......+..+ ..+++.+++.
T Consensus 255 h~~---~v~~v~~~~---~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 327 (393)
T 1erj_A 255 HKD---SVYSVVFTR---DGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 327 (393)
T ss_dssp CSS---CEEEEEECT---TSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred CCC---CEEEEEECC---CCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEE
Confidence 111 112344543 554 44566667777777443211 11 11222233345555 3444555555
Q ss_pred EeCCCCCcEEEEEEcCCCcc
Q 004735 417 GASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 417 ~~~~~~~~~ly~~dl~~~~~ 436 (732)
++.. ..++++|+.+++.
T Consensus 328 gs~D---~~v~iwd~~~~~~ 344 (393)
T 1erj_A 328 GSKD---RGVLFWDKKSGNP 344 (393)
T ss_dssp EETT---SEEEEEETTTCCE
T ss_pred EeCC---CeEEEEECCCCeE
Confidence 5433 3688888887764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-06 Score=92.49 Aligned_cols=205 Identities=8% Similarity=-0.005 Sum_probs=118.9
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
....+|+|||++|+.... ...|+++++.+++......+......+....|+|||+.|+..+. .
T Consensus 11 i~~~~~s~~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--------d 73 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPN---------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT--------D 73 (372)
T ss_dssp CCEEEECTTSSEEEEECS---------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET--------T
T ss_pred eEEEEECCCCCEEEEEeC---------CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC--------C
Confidence 466789999998665533 15788889887731014555555566778899999999887662 2
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCe--EEEec-ccccccCC
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE--VLAIY-SLDAEFSR 349 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~--~~~l~-~~~~~~~~ 349 (732)
..|.++|+. +++......+.... ..+..+.|+|||++++.... .+...+|.++..... .+.+. .....+.
T Consensus 74 g~i~vwd~~-~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~- 146 (372)
T 1k8k_C 74 RNAYVWTLK-GRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDWWVCKHIKKPIRSTVL- 146 (372)
T ss_dssp SCEEEEEEE-TTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTEEEEEEECTTCCSCEE-
T ss_pred CeEEEEECC-CCeeeeeEEeecCC----CceeEEEECCCCCEEEEEeC-CCEEEEEEecCCCcceeeeeeecccCCCee-
Confidence 348888988 67643333333333 56778999999995555554 455555544432211 22221 1121222
Q ss_pred CceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE----------------CCCCc-eEEeccCCCceEEe-eEeCC
Q 004735 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD----------------DFGHS-LSLLDIPFTDIDNI-TLGND 411 (732)
Q Consensus 350 ~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~----------------~~~~~-~~~lt~~~~~v~~~-~~~~~ 411 (732)
.+.|.+ +++ ++++...++.-.||-+. ...++ ...+......+..+ ..+++
T Consensus 147 --------~~~~~~---~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 147 --------SLDWHP---NSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214 (372)
T ss_dssp --------EEEECT---TSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred --------EEEEcC---CCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence 233432 454 44455567766666432 22233 34444445567666 34455
Q ss_pred EEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 412 CLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 412 ~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+++.++.. ..|.++|+.+++.
T Consensus 215 ~~l~~~~~d---~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 215 SRVAWVSHD---STVCLADADKKMA 236 (372)
T ss_dssp SEEEEEETT---TEEEEEEGGGTTE
T ss_pred CEEEEEeCC---CEEEEEECCCCce
Confidence 555555533 4688888877653
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-06 Score=87.70 Aligned_cols=269 Identities=10% Similarity=0.037 Sum_probs=146.8
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeE
Q 004735 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l 167 (732)
..+.++.|+|.+.+..+.. .++...+|..... +....++. +.....+..++++ ..+++...++.+
T Consensus 56 ~~v~~~~~s~d~~~l~s~s---~Dg~v~iWd~~~~---~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSAS---QDGKLIIWDSYTT---NKVHAIPL--------RSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE---TTTEEEEEETTTC---CEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CceEEEEECCCCCEEEEEe---CCCcEEEEECCCC---CcceEeec--------CCccEEEEEECCCCCEEEEEeCCCeE
Confidence 4567889998333334433 3477666654322 22111111 1111223333332 444555567889
Q ss_pred EEEeCCCCCCCce---ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE-EcccCC
Q 004735 168 YKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGS 243 (732)
Q Consensus 168 ~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~lt~~~ 243 (732)
.++++.+..+..+ .+... ........|+|+++ ++....+ ..|.++|+.+++ .. .+....
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~-l~s~s~d---------~~i~~wd~~~~~---~~~~~~~h~ 184 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGH----TGYLSCCRFLDDNQ-IVTSSGD---------TTCALWDIETGQ---QTTTFTGHT 184 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECC----SSCEEEEEEEETTE-EEEEETT---------SCEEEEETTTTE---EEEEECCCS
T ss_pred EEEECccCCCcceeEEEecCC----CccEEEEEECCCCc-EEEEECC---------CcEEEEECCCCc---EEEEEcCCC
Confidence 9999875211111 22222 22345567888886 3433331 468888998876 33 333344
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 323 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g 323 (732)
..+....|+|||+.|+-.+. ...|.++|+. +++. ...+.+.. ..+..+.|+|||+++++... .+
T Consensus 185 ~~v~~~~~~~~~~~l~sg~~--------d~~v~~wd~~-~~~~--~~~~~~h~----~~v~~v~~~p~~~~l~s~s~-d~ 248 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGAC--------DASAKLWDVR-EGMC--RQTFTGHE----SDINAICFFPNGNAFATGSD-DA 248 (340)
T ss_dssp SCEEEEEECTTSSEEEEEET--------TSCEEEEETT-TCSE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TS
T ss_pred CceEEEEECCCCCEEEEEeC--------CCcEEEEECC-CCee--EEEEcCCc----CCEEEEEEcCCCCEEEEEcC-CC
Confidence 55677899999997765552 2348889988 6654 44455554 56778899999995555544 44
Q ss_pred eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCc
Q 004735 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTD 402 (732)
Q Consensus 324 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~ 402 (732)
. |..+|+.+++.......... . .....+.|.+ +++ ++++...++.-.|| +..+++ ...+......
T Consensus 249 ~--v~iwd~~~~~~~~~~~~~~~-~-----~~v~~~~~s~---~g~-~l~~g~~d~~i~vw--d~~~~~~~~~~~~h~~~ 314 (340)
T 1got_B 249 T--CRLFDLRADQELMTYSHDNI-I-----CGITSVSFSK---SGR-LLLAGYDDFNCNVW--DALKADRAGVLAGHDNR 314 (340)
T ss_dssp C--EEEEETTTTEEEEEECCTTC-C-----SCEEEEEECT---TSS-EEEEEETTSEEEEE--ETTTCCEEEEEECCSSC
T ss_pred c--EEEEECCCCcEEEEEccCCc-c-----cceEEEEECC---CCC-EEEEECCCCeEEEE--EcccCcEeeEeecCCCc
Confidence 4 55567777654332221110 0 0122344542 554 55555566665555 665554 3455555666
Q ss_pred eEEe-eEeCCEEEEEEe
Q 004735 403 IDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 403 v~~~-~~~~~~~~~~~~ 418 (732)
|..+ ..+++.+++.++
T Consensus 315 v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 315 VSCLGVTDDGMAVATGS 331 (340)
T ss_dssp EEEEEECTTSSCEEEEE
T ss_pred EEEEEEcCCCCEEEEEc
Confidence 7777 445555555554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.68 E-value=5.9e-07 Score=92.33 Aligned_cols=204 Identities=11% Similarity=0.113 Sum_probs=125.1
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~ 168 (732)
.+.++.|++ ++.|||++... + .|++.+..++...+.+.... +....+.++.+.++.|+|.+...+.|+
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~---~--~I~r~~~~g~~~~~~~~~~~------l~~p~glavd~~~g~ly~~d~~~~~I~ 104 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSE---E--AIKRTEFNKTESVQNVVVSG------LLSPDGLACDWLGEKLYWTDSETNRIE 104 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTT---T--EEEEEETTSSSCCCEEEEEC------CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred ccEEEEEEeCCCEEEEEECCC---C--cEEEEEccCCCceEEEEcCC------CCCccEEEEEcCCCeEEEEECCCCEEE
Confidence 456789999 89999999743 3 46777665321112222111 111222333334678999988888999
Q ss_pred EEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cCCCcee
Q 004735 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYA 247 (732)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~ 247 (732)
++++++ ...+.+.... .....+.+++|++.+|+++.... ...|+++++++.. .+.+. .+-..-.
T Consensus 105 ~~~~dG--~~~~~l~~~~---~~~P~giavdp~~g~ly~td~~~-------~~~I~r~~~dG~~---~~~~~~~~l~~Pn 169 (318)
T 3sov_A 105 VSNLDG--SLRKVLFWQE---LDQPRAIALDPSSGFMYWTDWGE-------VPKIERAGMDGSS---RFIIINSEIYWPN 169 (318)
T ss_dssp EEETTS--CSCEEEECSS---CSSEEEEEEEGGGTEEEEEECSS-------SCEEEEEETTSCS---CEEEECSSCSCEE
T ss_pred EEECCC--CcEEEEEeCC---CCCccEEEEeCCCCEEEEEecCC-------CCEEEEEEcCCCC---eEEEEECCCCCcc
Confidence 999986 5555554221 22336778999888866664321 2689999999765 55553 3334456
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeE
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l 327 (732)
+.+++||+++|+|... ....|+++|++ ++.. ..+..+.. ..+..++... +.+||+ +. +...|
T Consensus 170 glavd~~~~~lY~aD~-------~~~~I~~~d~d-G~~~--~~~~~~~~----~~P~glav~~-~~lywt-d~--~~~~V 231 (318)
T 3sov_A 170 GLTLDYEEQKLYWADA-------KLNFIHKSNLD-GTNR--QAVVKGSL----PHPFALTLFE-DILYWT-DW--STHSI 231 (318)
T ss_dssp EEEEETTTTEEEEEET-------TTTEEEEEETT-SCSC--EEEECSCC----SCEEEEEEET-TEEEEE-ET--TTTEE
T ss_pred EEEEeccCCEEEEEEC-------CCCEEEEEcCC-CCce--EEEecCCC----CCceEEEEeC-CEEEEE-ec--CCCeE
Confidence 7899999999998863 24569999987 3322 22333222 3344455532 226665 44 45679
Q ss_pred EEEeccCCeE
Q 004735 328 HKWIESNNEV 337 (732)
Q Consensus 328 ~~~d~~~g~~ 337 (732)
++++..+|+.
T Consensus 232 ~~~~~~~G~~ 241 (318)
T 3sov_A 232 LACNKYTGEG 241 (318)
T ss_dssp EEEETTTCCS
T ss_pred EEEECCCCCc
Confidence 9999866654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=3e-06 Score=91.46 Aligned_cols=113 Identities=10% Similarity=0.164 Sum_probs=70.9
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC-CCccccEE--------cccCCCceeccccCCCC-CeEEEE
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQEPKV--------LVSGSDFYAFPRMDPRG-ERMAWI 261 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~--------lt~~~~~~~~p~~SPDG-~~la~~ 261 (732)
.....+|+|||+.|+.. . + ..|.++|+.. ++ ... +......+....|+||| +.|+..
T Consensus 179 ~v~~~~~~~~~~~l~s~-~-d--------~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-D-D--------LRINLWHLEITDR---SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp CCCEEEECTTSSEEEEE-C-S--------SEEEEEETTEEEE---EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred ceEEEEEcCCCCEEEEe-C-C--------CeEEEEECCCCCc---eeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence 34667899999986653 3 2 5788889873 32 222 22334456778999999 777666
Q ss_pred eccCCCCCCCccEEEEEEecCCCcee--eeEEecCCCCCccc------------cCcCceeCCCCcEEEEEeccCCeeeE
Q 004735 262 EWHHPNMPWDKAELWVGYISENGDVY--KRVCVAGFDPTIVE------------SPTEPKWSSKGELFFVTDRKNGFWNL 327 (732)
Q Consensus 262 ~~~~~~~~~~~~~l~v~d~~~~g~~~--~~~~~~~~~~~~~~------------~~~~~~wspDg~l~~~~~~~~g~~~l 327 (732)
+. ...|.++|+. +++.. ....+.... . .+..+.|+|||++++.... ..|
T Consensus 246 ~~--------dg~i~iwd~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v 308 (447)
T 3dw8_B 246 SS--------KGTIRLCDMR-ASALCDRHSKLFEEPE----DPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSV 308 (447)
T ss_dssp ET--------TSCEEEEETT-TCSSSCTTCEEECCC---------CCHHHHHTTCEEEEEECTTSSEEEEEES----SEE
T ss_pred eC--------CCeEEEEECc-CCccccceeeEeccCC----CccccccccccCceEEEEEECCCCCEEEEeeC----CeE
Confidence 52 2348999988 55421 123444432 2 5678899999995444432 456
Q ss_pred EEEeccC
Q 004735 328 HKWIESN 334 (732)
Q Consensus 328 ~~~d~~~ 334 (732)
.++|+.+
T Consensus 309 ~iwd~~~ 315 (447)
T 3dw8_B 309 KVWDLNM 315 (447)
T ss_dssp EEEETTC
T ss_pred EEEeCCC
Confidence 6677765
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-08 Score=106.83 Aligned_cols=110 Identities=11% Similarity=-0.025 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCCCCCccCCcccH-HHHHHHH-CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNL-SIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~-~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
...|+||++||..... ...|.. +...+.+ .+|.|+++|++|.+... +...... -....+++.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~~~--~~~~a~~l~~ll~~L~~~~g 142 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTS--YTQAANN--VRVVGAQVAQMLSMLSANYS 142 (450)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC--HHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCc--chHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 3468999999975433 223433 4445554 48999999999743221 1111100 00124567777788765444
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
++.+++.|+|||+||.+|+.++. +|+ ++.++++.|..
T Consensus 143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 56789999999999999999988 888 99999887754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-06 Score=95.79 Aligned_cols=242 Identities=15% Similarity=0.117 Sum_probs=135.4
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeEE
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l~ 168 (732)
+.+++|+| +..+..+-. .++...+|..... ....... ..+-..|...+.+..++.+ .++++...++.|.
T Consensus 385 V~~v~~~~~~~~~l~s~s---~D~~i~~W~~~~~--~~~~~~~----~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSAS---RDKSIILWKLTKD--DKAYGVA----QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEEECCTTCCSEEEEEE---TTSEEEEEECCCS--TTCSCEE----EEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEEEecCCCCCEEEEEe---CCCcEEEEEccCC--Ccccccc----cceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 45677777 555655554 2477777766433 1110000 0000112223344555543 5666766788999
Q ss_pred EEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc----CC
Q 004735 169 KHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS----GS 243 (732)
Q Consensus 169 ~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~----~~ 243 (732)
++|+.+ +. .+.+... .......+|+|||++|+....+ ..|.++|..+.. ...+.. ..
T Consensus 456 vwd~~~--~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~s~D---------~~i~iwd~~~~~---~~~~~~~~~~h~ 517 (694)
T 3dm0_A 456 LWDLAA--GVSTRRFVGH----TKDVLSVAFSLDNRQIVSASRD---------RTIKLWNTLGEC---KYTISEGGEGHR 517 (694)
T ss_dssp EEETTT--TEEEEEEECC----SSCEEEEEECTTSSCEEEEETT---------SCEEEECTTSCE---EEEECSSTTSCS
T ss_pred EEECCC--CcceeEEeCC----CCCEEEEEEeCCCCEEEEEeCC---------CEEEEEECCCCc---ceeeccCCCCCC
Confidence 999987 43 3344433 3445677899999987655442 467777876544 333321 22
Q ss_pred CceeccccCCCCC--eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 244 DFYAFPRMDPRGE--RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 244 ~~~~~p~~SPDG~--~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
..+...+|||++. .|+-.+ . ...|.++|+. +++. ...+.+.. ..+..+.|+|||+++++...
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s-~-------d~~v~vwd~~-~~~~--~~~~~~h~----~~v~~v~~spdg~~l~sg~~- 581 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSAS-W-------DKTVKVWNLS-NCKL--RSTLAGHT----GYVSTVAVSPDGSLCASGGK- 581 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEE-T-------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECTTSSEEEEEET-
T ss_pred CcEEEEEEeCCCCcceEEEEe-C-------CCeEEEEECC-CCcE--EEEEcCCC----CCEEEEEEeCCCCEEEEEeC-
Confidence 3456678999984 344333 2 2338899998 6655 44555554 66788999999995555554
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
.+. |.++|+.+++..........+ ..+.|.+ ++ .++..+. ++. |.++++.+++.
T Consensus 582 Dg~--i~iwd~~~~~~~~~~~~~~~v---------~~~~~sp---~~-~~l~~~~-~~~--i~iwd~~~~~~ 635 (694)
T 3dm0_A 582 DGV--VLLWDLAEGKKLYSLEANSVI---------HALCFSP---NR-YWLCAAT-EHG--IKIWDLESKSI 635 (694)
T ss_dssp TSB--CEEEETTTTEEEECCBCSSCE---------EEEEECS---SS-SEEEEEE-TTE--EEEEETTTTEE
T ss_pred CCe--EEEEECCCCceEEEecCCCcE---------EEEEEcC---CC-cEEEEEc-CCC--EEEEECCCCCC
Confidence 454 555677777643322222111 2234442 44 4444443 333 66667777654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.6e-06 Score=88.34 Aligned_cols=229 Identities=14% Similarity=0.069 Sum_probs=140.5
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++|.. ...|+++++++ +..+.+... ......+.|+++++.|+++... ...|++++++++.
T Consensus 89 ~l~~~~--~~~I~~i~~~~--~~~~~~~~~----~~~~~gl~~d~~~~~ly~~D~~--------~~~I~r~~~~g~~--- 149 (386)
T 3v65_B 89 VLLFAN--RIDIRQVLPHR--SEYTLLLNN----LENAIALDFHHRRELVFWSDVT--------LDRILRANLNGSN--- 149 (386)
T ss_dssp EEEEEC--BSCEEEECTTS--CCCEEEECS----CSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCC---
T ss_pred eeEeec--CccceeeccCC--CcEEEEecC----CCccEEEEEecCCCeEEEEeCC--------CCcEEEEecCCCC---
Confidence 566664 35699999987 666555543 2234667899988887666332 2689999999876
Q ss_pred cEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-
Q 004735 236 PKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 313 (732)
Q Consensus 236 ~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~- 313 (732)
.+.+. .+.....+.++++++..|+|.... ...|++++++ |... ..++...- ..+..++.+|++.
T Consensus 150 ~~~~~~~~~~~p~glavd~~~g~lY~~d~~-------~~~I~~~~~d--g~~~-~~l~~~~l----~~P~giavdp~~g~ 215 (386)
T 3v65_B 150 VEEVVSTGLESPGGLAVDWVHDKLYWTDSG-------TSRIEVANLD--GAHR-KVLLWQSL----EKPRAIALHPMEGT 215 (386)
T ss_dssp EEEEECSSCSCCCCEEEETTTTEEEEEETT-------TTEEEECBTT--SCSC-EEEECSSC----SCEEEEEEETTTTE
T ss_pred cEEEEeCCCCCccEEEEEeCCCeEEEEcCC-------CCeEEEEeCC--CCce-EEeecCCC----CCCcEEEEEcCCCe
Confidence 54443 333334567888888889887632 3468888876 3322 22333222 3456778888766
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
|||+ +. .....|+++++++...+.+.... ..|. +.+.+.+ +++.|||+.. +...|++++++++..
T Consensus 216 ly~t-d~-~~~~~I~r~~~dG~~~~~~~~~~-----~~~P---nGlavd~---~~~~lY~aD~--~~~~I~~~d~dG~~~ 280 (386)
T 3v65_B 216 IYWT-DW-GNTPRIEASSMDGSGRRIIADTH-----LFWP---NGLTIDY---AGRRMYWVDA--KHHVIERANLDGSHR 280 (386)
T ss_dssp EEEE-EC-SSSCEEEEEETTSCSCEEEECSS-----CSCE---EEEEEEG---GGTEEEEEET--TTTEEEEECTTSCSC
T ss_pred EEEe-cc-CCCCEEEEEeCCCCCcEEEEECC-----CCCe---eeEEEeC---CCCEEEEEEC--CCCEEEEEeCCCCee
Confidence 6654 54 23468999999886666554321 1121 1234432 5778888753 345799999988765
Q ss_pred EEecc-CCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 394 SLLDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 394 ~~lt~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.+.. +......+...++.+++.-. ....|++++..+|+
T Consensus 281 ~~~~~~~~~~P~giav~~~~ly~td~---~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 281 KAVISQGLPHPFAITVFEDSLYWTDW---HTKSINSANKFTGK 320 (386)
T ss_dssp EEEECSSCSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred EEEEECCCCCceEEEEECCEEEEeeC---CCCeEEEEECCCCc
Confidence 55443 33344555445666655443 33568888854554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.3e-06 Score=85.01 Aligned_cols=229 Identities=14% Similarity=0.068 Sum_probs=139.3
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++|.. ...|+++++++ ...+.+... ......+.|+++++.|+++... ...|++++++++.
T Consensus 46 ~ll~~~--~~~I~~i~~~g--~~~~~~~~~----~~~~~~l~~d~~~~~ly~~D~~--------~~~I~r~~~~g~~--- 106 (349)
T 3v64_C 46 VLLFAN--RIDIRQVLPHR--SEYTLLLNN----LENAIALDFHHRRELVFWSDVT--------LDRILRANLNGSN--- 106 (349)
T ss_dssp EEEEEC--BSCEEEECTTS--CCEEEEECS----CSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCS---
T ss_pred eeEeec--ccceEEEeCCC--CeeEEeecC----CCceEEEEEeccccEEEEEecc--------CCceEEEecCCCC---
Confidence 466664 34599999986 555555443 1234567899988887666332 2689999999876
Q ss_pred cEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-
Q 004735 236 PKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 313 (732)
Q Consensus 236 ~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~- 313 (732)
.+.+. .+.....+.++.++++.|+|+... ...|++++++ |+.. ..++...- ..+..++.+|++.
T Consensus 107 ~~~~~~~~~~~p~glavd~~~g~ly~~d~~-------~~~I~~~~~d--G~~~-~~l~~~~l----~~P~~iavdp~~g~ 172 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWVHDKLYWTDSG-------TSRIEVANLD--GAHR-KVLLWQSL----EKPRAIALHPMEGT 172 (349)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETT--SCSC-EEEECTTC----SCEEEEEEETTTTE
T ss_pred ceEEEeCCCCCccEEEEecCCCeEEEEcCC-------CCeEEEEcCC--CCce-EEEEeCCC----CCcceEEEecCcCe
Confidence 55543 333334567788888889888632 3469999987 3322 22333222 3456778888766
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
|||+ +. .....|+++++++...+.+.... ..|. +.+.+.+ +++.|||+.. +...|++++++++..
T Consensus 173 ly~t-d~-~~~~~I~r~~~dG~~~~~~~~~~-----~~~P---nGla~d~---~~~~lY~aD~--~~~~I~~~~~dG~~~ 237 (349)
T 3v64_C 173 IYWT-DW-GNTPRIEASSMDGSGRRIIADTH-----LFWP---NGLTIDY---AGRRMYWVDA--KHHVIERANLDGSHR 237 (349)
T ss_dssp EEEE-EC-SSSCEEEEEETTSCSCEESCCSS-----CSCE---EEEEEET---TTTEEEEEET--TTTEEEEEETTSCSC
T ss_pred EEEe-cc-CCCCEEEEEeCCCCCcEEEEECC-----CCCc---ceEEEeC---CCCEEEEEEC--CCCEEEEEeCCCCce
Confidence 6654 44 23368999999876665554321 1121 2234432 6788888754 345799999988765
Q ss_pred EEec-cCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 394 SLLD-IPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 394 ~~lt-~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.+. .+......+...++.+++.-.. ...|++++..+|+
T Consensus 238 ~~~~~~~~~~P~giav~~~~ly~td~~---~~~V~~~~~~~G~ 277 (349)
T 3v64_C 238 KAVISQGLPHPFAITVFEDSLYWTDWH---TKSINSANKFTGK 277 (349)
T ss_dssp EEEECSSCSSEEEEEEETTEEEEEETT---TTEEEEEETTTCC
T ss_pred EEEEeCCCCCceEEEEECCEEEEecCC---CCeEEEEEccCCC
Confidence 5543 3333445554455666554332 3468888854444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-07 Score=93.52 Aligned_cols=214 Identities=12% Similarity=0.079 Sum_probs=121.5
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
...++|+.+. .....+.|+|||+.|+++.... ..|++++.+ ++ .+.+...........++|||+
T Consensus 35 ~~~~~l~~~~----~~~egp~~~~~g~~l~~~d~~~--------~~i~~~~~~-g~---~~~~~~~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 35 ARLLTLYDQA----TWSEGPAWWEAQRTLVWSDLVG--------RRVLGWRED-GT---VDVLLDATAFTNGNAVDAQQR 98 (305)
T ss_dssp CCCEEEECCC----SSEEEEEEEGGGTEEEEEETTT--------TEEEEEETT-SC---EEEEEESCSCEEEEEECTTSC
T ss_pred CceEEEecCC----cCccCCeEeCCCCEEEEEECCC--------CEEEEEeCC-CC---EEEEeCCCCccceeeECCCCC
Confidence 5667776552 2235689999999887775422 589999984 55 555655555667789999998
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEe----c----------cC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD----R----------KN 322 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~----~----------~~ 322 (732)
|+... . ....|++++.+ |+.+.+.......+. ..+..+.+++||+++++-. . ..
T Consensus 99 -l~v~~-~------~~~~v~~~~~~--g~~~~~~~~~~~~~~--~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~ 166 (305)
T 3dr2_A 99 -LVHCE-H------GRRAITRSDAD--GQAHLLVGRYAGKRL--NSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPEL 166 (305)
T ss_dssp -EEEEE-T------TTTEEEEECTT--SCEEEEECEETTEEC--SCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSS
T ss_pred -EEEEE-C------CCCEEEEECCC--CCEEEEEeccCCCcc--CCCCCEEECCCCCEEEeCcCCCcccccccccccccc
Confidence 43333 1 12458888864 554322111111100 2356789999999777421 0 01
Q ss_pred CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC---CEEEEEEEECCCCceE---Ee
Q 004735 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN---GRSYLGILDDFGHSLS---LL 396 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~---g~~~ly~~~~~~~~~~---~l 396 (732)
+...||++++++++.+.+. .. ..| +.+.|.+ +++.||+..... +...|++++++++.+. .+
T Consensus 167 ~~~~v~~~d~~~g~~~~~~-~~---~~p------~gl~~sp---dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~ 233 (305)
T 3dr2_A 167 AHHSVYRLPPDGSPLQRMA-DL---DHP------NGLAFSP---DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF 233 (305)
T ss_dssp SCEEEEEECSSSCCCEEEE-EE---SSE------EEEEECT---TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE
T ss_pred CCCeEEEEcCCCCcEEEEe-cC---CCC------cceEEcC---CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE
Confidence 2467999999888877765 21 111 1233433 777777765432 1246888777654321 11
Q ss_pred -ccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 397 -DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 397 -t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.........+ .+.++++ ++++ ...|++++.++...
T Consensus 234 ~~~~~~~pdgi~~d~~G~l-wv~~----~~gv~~~~~~g~~~ 270 (305)
T 3dr2_A 234 ASVPDGLPDGFCVDRGGWL-WSSS----GTGVCVFDSDGQLL 270 (305)
T ss_dssp ECCSSSCCCSEEECTTSCE-EECC----SSEEEEECTTSCEE
T ss_pred EECCCCCCCeEEECCCCCE-EEec----CCcEEEECCCCCEE
Confidence 1112223334 3344554 4443 13599998865443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-07 Score=114.50 Aligned_cols=270 Identities=10% Similarity=0.026 Sum_probs=149.2
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l 167 (732)
.+..+.++| ++.++... .+|...+|....+ +...... .+...+.+..++++ ..+++...++.|
T Consensus 963 ~i~~~~~sp~g~~l~~g~----~~g~i~i~d~~~~---~~~~~~~--------~h~~~v~~l~~s~dg~~l~s~~~dg~i 1027 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGD----EDGAIKIIELPNN---RVFSSGV--------GHKKAVRHIQFTADGKTLISSSEDSVI 1027 (1249)
T ss_dssp CEEEEEECTTSSEEEEEE----TTSCCEEEETTTT---SCEEECC--------CCSSCCCCEEECSSSSCEEEECSSSBE
T ss_pred cEEEEEEcCCCCEEEEEc----CCCCEEEEEcCCC---ceeeecc--------cCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 356778888 66555433 3466666665332 2211111 11222344555433 445566678899
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCcee
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA 247 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~ 247 (732)
.++++.+ +....+... ........|+|+++.+ .... ...|.++|+.+++. ...+......+.
T Consensus 1028 ~vwd~~~--~~~~~~~~~----~~~v~~~~~~~~~~l~-~~~~---------dg~v~vwd~~~~~~--~~~~~~~~~~v~ 1089 (1249)
T 3sfz_A 1028 QVWNWQT--GDYVFLQAH----QETVKDFRLLQDSRLL-SWSF---------DGTVKVWNVITGRI--ERDFTCHQGTVL 1089 (1249)
T ss_dssp EEEETTT--TEEECCBCC----SSCEEEEEECSSSEEE-EEES---------SSEEEEEETTTTCC--CEEEECCSSCCC
T ss_pred EEEECCC--CceEEEecC----CCcEEEEEEcCCCcEE-EEEC---------CCcEEEEECCCCce--eEEEcccCCcEE
Confidence 9999987 655554433 3445677899988743 3332 15899999988772 344554555667
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeE
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l 327 (732)
...|||||+.|+..+.+ ..|.++|+. +++. ...+.+.. ..+..+.|+|||+++++... .|. |
T Consensus 1090 ~~~~s~d~~~l~s~s~d--------~~v~iwd~~-~~~~--~~~l~~h~----~~v~~~~~s~dg~~lat~~~-dg~--i 1151 (1249)
T 3sfz_A 1090 SCAISSDATKFSSTSAD--------KTAKIWSFD-LLSP--LHELKGHN----GCVRCSAFSLDGILLATGDD-NGE--I 1151 (1249)
T ss_dssp CEEECSSSSSCEEECCS--------SCCCEECSS-SSSC--SBCCCCCS----SCEEEEEECSSSSEEEEEET-TSC--C
T ss_pred EEEECCCCCEEEEEcCC--------CcEEEEECC-Ccce--eeeeccCC----CcEEEEEECCCCCEEEEEeC-CCE--E
Confidence 78999999998876522 337888887 5654 33344443 55778899999995555554 454 5
Q ss_pred EEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE-EeccCCCceEE
Q 004735 328 HKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDIDN 405 (732)
Q Consensus 328 ~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~-~lt~~~~~v~~ 405 (732)
..+|..+++..... +................+.|.+ ++..++.. +| .|.++++.+++.. .+......+..
T Consensus 1152 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~---dg~~l~s~---~g--~v~vwd~~~g~~~~~~~~~~~~i~~ 1223 (1249)
T 3sfz_A 1152 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP---DSKTLVSA---GG--YLKWWNVATGDSSQTFYTNGTNLKK 1223 (1249)
T ss_dssp CEEESSSSCCCCCCCCCC-------CCSCCCEEEECT---TSSCEEEE---SS--SEEEBCSSSCBCCCCCCCSSCCCCC
T ss_pred EEEECCCCceEEEeccccccccccccCceEEEEEECC---CCCEEEEC---CC--eEEEEECCCCceeeeeeccCCcccE
Confidence 55567666543221 1000000000001123345553 66666543 24 4556677776543 33333444555
Q ss_pred e-eEeCCEEEEEEe
Q 004735 406 I-TLGNDCLFVEGA 418 (732)
Q Consensus 406 ~-~~~~~~~~~~~~ 418 (732)
+ ..+++..++..+
T Consensus 1224 ~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A 1224 IHVSPDFRTYVTVD 1237 (1249)
T ss_dssp CEECSSSCCEEEEC
T ss_pred EEECCCCCEEEEec
Confidence 5 344454544443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-06 Score=88.15 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=92.8
Q ss_pred EEEEEeCCCCeEEEEeCCCCCC-CceecCCCCCCCCeEeece----eecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADG----IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~----~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
..+++...++.|.++|+.++ . ....+....+......... .|+|+|+.++....+ ..|+++|+.+
T Consensus 130 ~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~ 199 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWDPRQK-DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN---------GDIKLFDLRN 199 (357)
T ss_dssp CEEEEEETTSCEEEECTTSC-SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---------SEEEEEETTT
T ss_pred cEEEEEeCCCeEEEEeCCCC-CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---------CeEEEEECcc
Confidence 34455556788999999862 2 2344433221111122333 389999987665442 5899999998
Q ss_pred CCccccEEcccCCCceeccccCC---CCCeEEEEeccCCCCCCCccEEEEEEecCCCceee-eE--EecCCCCCccccCc
Q 004735 231 QNIQEPKVLVSGSDFYAFPRMDP---RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RV--CVAGFDPTIVESPT 304 (732)
Q Consensus 231 ~~~~~~~~lt~~~~~~~~p~~SP---DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~-~~--~~~~~~~~~~~~~~ 304 (732)
++ ...............|+| ||+.|+... ....|.++|+. +++... .. .+.+.. ..+.
T Consensus 200 ~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~-~~~~~~~~~~~~~~~~~----~~v~ 263 (357)
T 3i2n_A 200 MA---LRWETNIKNGVCSLEFDRKDISMNKLVATS--------LEGKFHVFDMR-TQHPTKGFASVSEKAHK----STVW 263 (357)
T ss_dssp TE---EEEEEECSSCEEEEEESCSSSSCCEEEEEE--------STTEEEEEEEE-EEETTTEEEEEEEECCS----SCEE
T ss_pred Cc---eeeecCCCCceEEEEcCCCCCCCCEEEEEC--------CCCeEEEEeCc-CCCcccceeeeccCCCc----CCEE
Confidence 87 555554555677889999 999887765 23458888987 443211 11 122443 5677
Q ss_pred CceeCCCCc-EEEEEeccCCeeeEEEEe
Q 004735 305 EPKWSSKGE-LFFVTDRKNGFWNLHKWI 331 (732)
Q Consensus 305 ~~~wspDg~-l~~~~~~~~g~~~l~~~d 331 (732)
.+.|+|||+ ++++... .|.-.||.++
T Consensus 264 ~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 290 (357)
T 3i2n_A 264 QVRHLPQNRELFLTAGG-AGGLHLWKYE 290 (357)
T ss_dssp EEEEETTEEEEEEEEET-TSEEEEEEEE
T ss_pred EEEECCCCCcEEEEEeC-CCcEEEeecC
Confidence 899999998 7776665 5665555443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.7e-07 Score=94.33 Aligned_cols=204 Identities=10% Similarity=0.110 Sum_probs=126.4
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCe
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~ 166 (732)
...+.++.|++ ++.|||++... + .|++.+.+++ ..+.+.... +....+.++.+.++.|+|.+...+.
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~---~--~I~r~~~~g~-~~~~~~~~~------~~~p~glavd~~~g~lY~~d~~~~~ 182 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTL---D--RILRANLNGS-NVEEVVSTG------LESPGGLAVDWVHDKLYWTDSGTSR 182 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTT---T--EEEEEETTSC-CEEEEECSS------CSCCCCEEEETTTTEEEEEETTTTE
T ss_pred CCccEEEEEecCCCeEEEEeCCC---C--cEEEEecCCC-CcEEEEeCC------CCCccEEEEEeCCCeEEEEcCCCCe
Confidence 34678999998 99999998732 3 4777766532 333333222 1112233344446789999888889
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cCCCc
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDF 245 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~ 245 (732)
|+++++++ ...+.+.... .....+.+++|++..|+++.... ...|+++++++.. .+.+. .+...
T Consensus 183 I~~~~~dg--~~~~~l~~~~---l~~P~giavdp~~g~ly~td~~~-------~~~I~r~~~dG~~---~~~~~~~~~~~ 247 (386)
T 3v65_B 183 IEVANLDG--AHRKVLLWQS---LEKPRAIALHPMEGTIYWTDWGN-------TPRIEASSMDGSG---RRIIADTHLFW 247 (386)
T ss_dssp EEECBTTS--CSCEEEECSS---CSCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCS---CEEEECSSCSC
T ss_pred EEEEeCCC--CceEEeecCC---CCCCcEEEEEcCCCeEEEeccCC-------CCEEEEEeCCCCC---cEEEEECCCCC
Confidence 99999986 5444444321 12346778999988876664321 2689999999866 55554 33344
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCee
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~ 325 (732)
-.+.+++|++++|+|+... ...|++++++ ++.. ..++.... ..+..++. .++.||++ +. +..
T Consensus 248 PnGlavd~~~~~lY~aD~~-------~~~I~~~d~d-G~~~--~~~~~~~~----~~P~giav-~~~~ly~t-d~--~~~ 309 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAK-------HHVIERANLD-GSHR--KAVISQGL----PHPFAITV-FEDSLYWT-DW--HTK 309 (386)
T ss_dssp EEEEEEEGGGTEEEEEETT-------TTEEEEECTT-SCSC--EEEECSSC----SSEEEEEE-ETTEEEEE-ET--TTT
T ss_pred eeeEEEeCCCCEEEEEECC-------CCEEEEEeCC-CCee--EEEEECCC----CCceEEEE-ECCEEEEe-eC--CCC
Confidence 5678999999999888632 3569999987 3222 22333222 34455566 23336554 44 445
Q ss_pred eEEEEeccCCe
Q 004735 326 NLHKWIESNNE 336 (732)
Q Consensus 326 ~l~~~d~~~g~ 336 (732)
.|.+++..+|+
T Consensus 310 ~V~~~~~~~G~ 320 (386)
T 3v65_B 310 SINSANKFTGK 320 (386)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 68888854554
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.7e-08 Score=100.11 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=77.1
Q ss_pred CEEEEEcCCCCCc--------cCCcc----cHHHHHHHHCCCE---EEEEcCCCCCCCChhhHHhhccCCCcccHHHHHH
Q 004735 496 PLLVKSHGGPTSE--------ARGIL----NLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS 560 (732)
Q Consensus 496 P~vl~~HGg~~~~--------~~~~~----~~~~~~l~~~G~~---v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~ 560 (732)
+.||++||..... ....| ..+++.|.++||. |+++|++|.+ .+...... .......+++.+
T Consensus 41 ~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g~G---~S~~~~~~-~~~~~~~~~l~~ 116 (342)
T 2x5x_A 41 TPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSS---EQGSAQYN-YHSSTKYAIIKT 116 (342)
T ss_dssp CCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSCHH---HHTCGGGC-CBCHHHHHHHHH
T ss_pred CeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCCCC---ccCCcccc-CCHHHHHHHHHH
Confidence 4488999975532 23455 6688889999998 9999998643 22100000 011123677888
Q ss_pred HHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C--CCcceEEEeecCcCC
Q 004735 561 CATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F--RDTFKAGASLYGVAD 609 (732)
Q Consensus 561 ~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~--p~~~~a~v~~~~~~d 609 (732)
.++.+.++. ..+++.|+||||||.+++.++. + |++++.+|++++...
T Consensus 117 ~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 117 FIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp HHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred HHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence 888887663 2468999999999999999988 6 899999999987653
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-06 Score=96.62 Aligned_cols=240 Identities=9% Similarity=0.055 Sum_probs=138.8
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCC----Cc-eecCCCCCCCCeE-eeceeecC--CCCEEEEEEeccCCCCCCcee
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDS----SP-LPITPDYGEPLVS-YADGIFDP--RFNRYVTVREDRRQDALNSTT 221 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~----~~-~~lt~~~~~~~~~-~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~ 221 (732)
|+++++.+++.. ++.|.++++++ + +. ..+... ... ....+|+| ||++|+....+ .
T Consensus 26 ~spdg~~l~~~~--~~~v~v~~~~~--~~~~~~~~~~~~~h----~~~~v~~~~~sp~~~~~~l~s~~~d---------g 88 (615)
T 1pgu_A 26 YDPTTNAIAYPC--GKSAFVRCLDD--GDSKVPPVVQFTGH----GSSVVTTVKFSPIKGSQYLCSGDES---------G 88 (615)
T ss_dssp EETTTTEEEEEE--TTEEEEEECCS--SCCSSCSEEEECTT----TTSCEEEEEECSSTTCCEEEEEETT---------S
T ss_pred ECCCCCEEEEec--CCeEEEEECCC--CCCccccceEEecC----CCceEEEEEECcCCCCCEEEEecCC---------C
Confidence 444455677765 56899999986 5 33 344433 334 66788999 99987655442 4
Q ss_pred EEEEEEcCCC------CccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCC
Q 004735 222 EIVAIALNGQ------NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF 295 (732)
Q Consensus 222 ~l~~~d~~~~------~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~ 295 (732)
.|.++++.++ +......+......+....|||||++|+....+... ...|+++| .++. ...+.+.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~----~~~v~~~d---~~~~--~~~~~~~ 159 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN----FGVFISWD---SGNS--LGEVSGH 159 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC----SEEEEETT---TCCE--EEECCSC
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC----ccEEEEEE---CCCc--ceeeecC
Confidence 6777787544 200022333344556778999999999887743321 34577765 3332 4445555
Q ss_pred CCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCC-CCEEEE
Q 004735 296 DPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGE-KNLIAC 373 (732)
Q Consensus 296 ~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~l~~ 373 (732)
. ..+..+.|+|||+ ++++... .+. |..+|..+++.............+ ...+.|.+ + ++ +++
T Consensus 160 ~----~~v~~~~~~~~~~~~l~~~~~-d~~--v~vwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~~---~~~~-~l~ 223 (615)
T 1pgu_A 160 S----QRINACHLKQSRPMRSMTVGD-DGS--VVFYQGPPFKFSASDRTHHKQGSF-----VRDVEFSP---DSGE-FVI 223 (615)
T ss_dssp S----SCEEEEEECSSSSCEEEEEET-TTE--EEEEETTTBEEEEEECSSSCTTCC-----EEEEEECS---TTCC-EEE
T ss_pred C----ccEEEEEECCCCCcEEEEEeC-CCc--EEEEeCCCcceeeeecccCCCCce-----EEEEEECC---CCCC-EEE
Confidence 4 5677899999998 6666655 454 555677777654433221110001 11233432 5 44 444
Q ss_pred EEEECCEEEEEEEECCCCceE-Ee-c---cCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 374 SYRQNGRSYLGILDDFGHSLS-LL-D---IPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 374 ~s~~~g~~~ly~~~~~~~~~~-~l-t---~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+...++. |+++++.+++.. .+ . .....+..+...++.+++.++.. ..+.++|+.+++.
T Consensus 224 ~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 224 TVGSDRK--ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD---ATIRVWDVTTSKC 286 (615)
T ss_dssp EEETTCC--EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT---SEEEEEETTTTEE
T ss_pred EEeCCCe--EEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCC---CcEEEEECCCCcE
Confidence 5555654 455577776644 44 2 44556777622155555555533 4688888887653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-06 Score=86.30 Aligned_cols=202 Identities=12% Similarity=0.093 Sum_probs=123.2
Q ss_pred eEEE--CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 150 FRIF--GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 150 ~~~~--~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.+++ ++.|++++...+.|+++++++ +..+.+.... .......+++|+++.|+++.. . ...|++++
T Consensus 41 i~~d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~~---~~~p~~ia~d~~~~~lyv~d~-~-------~~~I~~~~ 107 (267)
T 1npe_A 41 LAFDCVDKVVYWTDISEPSIGRASLHG--GEPTTIIRQD---LGSPEGIALDHLGRTIFWTDS-Q-------LDRIEVAK 107 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSS--CCCEEEECTT---CCCEEEEEEETTTTEEEEEET-T-------TTEEEEEE
T ss_pred EEEecCCCEEEEEECCCCEEEEEecCC--CCcEEEEECC---CCCccEEEEEecCCeEEEEEC-C-------CCEEEEEE
Confidence 3444 458999988888999999986 5554443221 123366789999888655533 2 26899999
Q ss_pred cCCCCccccEEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 228 LNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 228 ~~~~~~~~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
+++.. .+.+.. +...-...+++|++.+|++..+.. ....|++++++ |+.. ..+....- ..+..+
T Consensus 108 ~~g~~---~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-----~~~~I~~~~~d--g~~~-~~~~~~~~----~~P~gi 172 (267)
T 1npe_A 108 MDGTQ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-----DNPKIETSHMD--GTNR-RILAQDNL----GLPNGL 172 (267)
T ss_dssp TTSCS---CEEEECSSCSSEEEEEEETTTTEEEEEECCS-----SSCEEEEEETT--SCCC-EEEECTTC----SCEEEE
T ss_pred cCCCC---EEEEEECCCCCccEEEEeeCCCEEEEEECCC-----CCcEEEEEecC--CCCc-EEEEECCC----CCCcEE
Confidence 98765 444432 223445668999988898876332 13569999886 3321 12222221 345678
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
++++|++.+|.++. +...|++++++++..+.+... ...| ..+.+ +++.+|++.... ..|+++
T Consensus 173 a~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~---~~~P------~gi~~-----d~~~lyva~~~~--~~v~~~ 234 (267)
T 1npe_A 173 TFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEG---LQYP------FAVTS-----YGKNLYYTDWKT--NSVIAM 234 (267)
T ss_dssp EEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEEC---CCSE------EEEEE-----ETTEEEEEETTT--TEEEEE
T ss_pred EEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecC---CCCc------eEEEE-----eCCEEEEEECCC--CeEEEE
Confidence 99999874444554 345799999987655544321 1112 11222 567787765433 368888
Q ss_pred ECCCCce-EEec
Q 004735 387 DDFGHSL-SLLD 397 (732)
Q Consensus 387 ~~~~~~~-~~lt 397 (732)
+.++++. +.+.
T Consensus 235 d~~~g~~~~~i~ 246 (267)
T 1npe_A 235 DLAISKEMDTFH 246 (267)
T ss_dssp ETTTTEEEEEEC
T ss_pred eCCCCCceEEEc
Confidence 9887653 4444
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-06 Score=91.40 Aligned_cols=240 Identities=11% Similarity=0.021 Sum_probs=135.6
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
..+.|+.+.++.+. .++.|+++|+.+ ++..++....+ +...+...+|||||++|+....+ ..|.++|
T Consensus 109 ~~l~wS~~n~lAvg-ld~tV~lWd~~t--g~~~~~~~~~~-~~~~V~sv~fspdg~~lasgs~D---------g~v~iWd 175 (420)
T 4gga_A 109 NLVDWSSGNVLAVA-LDNSVYLWSASS--GDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSS---------AEVQLWD 175 (420)
T ss_dssp BCEEECTTSEEEEE-ETTEEEEEETTT--CCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETT---------SCEEEEE
T ss_pred eeEEECCCCEEEEE-eCCEEEEEECCC--CCEEEEEEecC-CCCcEEEEEECCCCCEEEEEECC---------CeEEEEE
Confidence 34566655444443 477899999998 66554432211 13456778899999987655442 2455555
Q ss_pred cCCCCccccEE-c-----------------------------------------ccCCCceeccccCCCCCeEEEEeccC
Q 004735 228 LNGQNIQEPKV-L-----------------------------------------VSGSDFYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 228 ~~~~~~~~~~~-l-----------------------------------------t~~~~~~~~p~~SPDG~~la~~~~~~ 265 (732)
+.+++ ... + ...........|+|+|+.|+....
T Consensus 176 ~~~~~---~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-- 250 (420)
T 4gga_A 176 VQQQK---RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-- 250 (420)
T ss_dssp TTTTE---EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred cCCCc---EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec--
Confidence 55443 111 1 111122334567888887765542
Q ss_pred CCCCCCccEEEEEEecCCCcee--eeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecc
Q 004735 266 PNMPWDKAELWVGYISENGDVY--KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS 342 (732)
Q Consensus 266 ~~~~~~~~~l~v~d~~~~g~~~--~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~ 342 (732)
...+.+++.. .++.. .+....... ..+....|+|++. ++.+... .....|..+|+.+++......
T Consensus 251 ------D~~v~i~~~~-~~~~~~~~~~~~~~~~----~~V~~~~~~p~~~~~la~~~g-s~D~~I~iwd~~t~~~~~~~~ 318 (420)
T 4gga_A 251 ------DNLVNVWPSA-PGEGGWVPLQTFTQHQ----GAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVD 318 (420)
T ss_dssp ------TSCEEEEESS-CCSSCSCCSEEECCCS----SCEEEEEECTTCTTEEEEEEC-TTTCEEEEEETTTTEEEEEEE
T ss_pred ------cccceEEeec-cccccceeeeeecccC----CceeeeeeCCCcccEEEEEee-cCCCEEEEEeCCccccceeec
Confidence 2237777776 44321 122333333 5567789999887 7665443 233457778888887655443
Q ss_pred cccccCCCceeecccceeeeeecCCCCEEEEEEE-ECCEEEEEEEECCCCc-eEEeccCCCceEEe-eEeCCEEEEEEeC
Q 004735 343 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~-~~g~~~ly~~~~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~ 419 (732)
.........|.+ +++.++..+. .++. |++++..+++ +..+......|..+ ..+++.+++.++.
T Consensus 319 ~~~~v~~~~~~~------------~~~~lv~~sg~~d~~--I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 319 AHSQVCSILWSP------------HYKELISGHGFAQNQ--LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 384 (420)
T ss_dssp CSSCEEEEEEET------------TTTEEEEEECTTTCC--EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred cccceeeeeecC------------CCCeEEEEEecCCCE--EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 322222333433 6677766543 3444 5555776665 44566556678777 4556666666554
Q ss_pred CCCCcEEEEEEcCCC
Q 004735 420 GVEPSSVAKVTLDDH 434 (732)
Q Consensus 420 ~~~~~~ly~~dl~~~ 434 (732)
. ..|.++|+...
T Consensus 385 D---~tvriWdv~~~ 396 (420)
T 4gga_A 385 D---ETLRLWRCFEL 396 (420)
T ss_dssp T---TEEEEECCSCS
T ss_pred C---CeEEEEECCCC
Confidence 3 24666666544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-06 Score=87.86 Aligned_cols=198 Identities=8% Similarity=-0.052 Sum_probs=119.0
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
.....+|||||++|+....+ ..|.++|+.+++. .+.+...........|+|||+.|+..+ .
T Consensus 15 ~V~~~~fsp~~~~l~s~~~d---------g~v~lWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~s--------~ 75 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYS---------GRVELWNYETQVE--VRSIQVTETPVRAGKFIARKNWIIVGS--------D 75 (304)
T ss_dssp CEEEEEECSSSSEEEEEETT---------SEEEEEETTTTEE--EEEEECCSSCEEEEEEEGGGTEEEEEE--------T
T ss_pred ceEEEEECCCCCEEEEEcCC---------CcEEEEECCCCce--eEEeeccCCcEEEEEEeCCCCEEEEEC--------C
Confidence 35677899999987665542 4788889988751 334444445566778999999988766 2
Q ss_pred ccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCC-eEEEecc-cccccCC
Q 004735 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN-EVLAIYS-LDAEFSR 349 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g-~~~~l~~-~~~~~~~ 349 (732)
...|.++|+. +|+. +..+.+.. ..+..+.|+||++++++... .+. |.++|..++ ....... ....+.
T Consensus 76 d~~i~vwd~~-~~~~--~~~~~~h~----~~v~~~~~~~~~~~l~sgs~-D~~--v~lWd~~~~~~~~~~~~~h~~~v~- 144 (304)
T 2ynn_A 76 DFRIRVFNYN-TGEK--VVDFEAHP----DYIRSIAVHPTKPYVLSGSD-DLT--VKLWNWENNWALEQTFEGHEHFVM- 144 (304)
T ss_dssp TSEEEEEETT-TCCE--EEEEECCS----SCEEEEEECSSSSEEEEEET-TSC--EEEEEGGGTTEEEEEECCCCSCEE-
T ss_pred CCEEEEEECC-CCcE--EEEEeCCC----CcEEEEEEcCCCCEEEEECC-CCe--EEEEECCCCcchhhhhcccCCcEE-
Confidence 3458999998 6764 44555554 56788999999995555554 454 445566655 3333222 221122
Q ss_pred CceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccC-CCceEEe--e-EeCCEEEEEEeCCCCCc
Q 004735 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIP-FTDIDNI--T-LGNDCLFVEGASGVEPS 424 (732)
Q Consensus 350 ~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~-~~~v~~~--~-~~~~~~~~~~~~~~~~~ 424 (732)
.+.|.+ ++..++++...++.-.|| ++..+. ...+..+ ...+..+ . .+++.+++.++.. .
T Consensus 145 --------~v~~~p---~~~~~l~sgs~D~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D---~ 208 (304)
T 2ynn_A 145 --------CVAFNP---KDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD---L 208 (304)
T ss_dssp --------EEEECT---TCTTEEEEEETTSEEEEE--ETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT---S
T ss_pred --------EEEECC---CCCCEEEEEeCCCeEEEE--ECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC---C
Confidence 233432 445566677778876666 554433 2233332 2344444 2 2344555555543 3
Q ss_pred EEEEEEcCCCc
Q 004735 425 SVAKVTLDDHK 435 (732)
Q Consensus 425 ~ly~~dl~~~~ 435 (732)
.|.++|+.+++
T Consensus 209 ~i~iWd~~~~~ 219 (304)
T 2ynn_A 209 TIKIWDYQTKS 219 (304)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEEeCCCCc
Confidence 68888888765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-05 Score=82.24 Aligned_cols=268 Identities=11% Similarity=0.049 Sum_probs=147.1
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCC
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~ 165 (732)
...+.++.|+| ++.++ +-. .++...+|..... .....+.. +.....+..++++ ..+.+...++
T Consensus 64 ~~~V~~~~~s~d~~~l~-s~s---~Dg~v~vWd~~~~--~~~~~~~~---------~~~~v~~~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIV-SSS---QDGKVIVWDSFTT--NKEHAVTM---------PCTWVMACAYAPSGCAIACGGLDN 128 (354)
T ss_dssp SSCEEEEEECTTSSEEE-EEE---TTSEEEEEETTTC--CEEEEEEC---------SSSCCCEEEECTTSSEEEEESTTS
T ss_pred CCeEEEEEECCCCCEEE-EEe---CCCeEEEEECCCC--CcceEEec---------CCCCEEEEEECCCCCEEEEeeCCC
Confidence 44567899999 65443 333 3577666654322 11111111 1111233344333 3445666777
Q ss_pred eEEEEeCCCCCCCc-------eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE
Q 004735 166 RLYKHSIDSKDSSP-------LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV 238 (732)
Q Consensus 166 ~l~~~d~~~~~~~~-------~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 238 (732)
.+.++++.. ... ..+... ........|+|++++|+....+ ..|.++|+.+++ ...
T Consensus 129 ~i~v~~~~~--~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~t~s~D---------~~v~lwd~~~~~---~~~ 190 (354)
T 2pbi_B 129 KCSVYPLTF--DKNENMAAKKKSVAMH----TNYLSACSFTNSDMQILTASGD---------GTCALWDVESGQ---LLQ 190 (354)
T ss_dssp EEEEEECCC--CTTCCSGGGCEEEEEC----SSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCC---EEE
T ss_pred CEEEEEEec--cccccccccceeeecc----CCcEEEEEEeCCCCEEEEEeCC---------CcEEEEeCCCCe---EEE
Confidence 788888754 211 111111 2234567899999987665542 578889998887 433
Q ss_pred -cccCCCceeccccCC--CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 239 -LVSGSDFYAFPRMDP--RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 239 -lt~~~~~~~~p~~SP--DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
+......+....|+| +|+.|+..+. ...|.++|+. +++. ...+.+.. ..+..+.|+|||+++
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~--------Dg~v~~wd~~-~~~~--~~~~~~h~----~~v~~v~~~p~~~~l 255 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGC--------DKKAMVWDMR-SGQC--VQAFETHE----SDVNSVRYYPSGDAF 255 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEET--------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECTTSSEE
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeC--------CCeEEEEECC-CCcE--EEEecCCC----CCeEEEEEeCCCCEE
Confidence 333333344455655 6787776552 2348999998 6765 44555554 567788999999955
Q ss_pred EEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eE
Q 004735 316 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LS 394 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~ 394 (732)
++... .+. |.++|+.+++...+....... .....+.|.+ ++. ++++...++.-+|| +..+++ +.
T Consensus 256 ~s~s~-D~~--v~lwd~~~~~~~~~~~~~~~~------~~~~~~~~s~---~g~-~l~~g~~d~~i~vw--d~~~~~~~~ 320 (354)
T 2pbi_B 256 ASGSD-DAT--CRLYDLRADREVAIYSKESII------FGASSVDFSL---SGR-LLFAGYNDYTINVW--DVLKGSRVS 320 (354)
T ss_dssp EEEET-TSC--EEEEETTTTEEEEEECCTTCC------SCEEEEEECT---TSS-EEEEEETTSCEEEE--ETTTCSEEE
T ss_pred EEEeC-CCe--EEEEECCCCcEEEEEcCCCcc------cceeEEEEeC---CCC-EEEEEECCCcEEEE--ECCCCceEE
Confidence 55544 444 555677766544333221100 0112334442 444 55555566665555 665554 44
Q ss_pred EeccCCCceEEe-eEeCCEEEEEEe
Q 004735 395 LLDIPFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 395 ~lt~~~~~v~~~-~~~~~~~~~~~~ 418 (732)
.+......|..+ ..+++.+++.++
T Consensus 321 ~l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 321 ILFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEECCCCcEEEEEECCCCCEEEEEc
Confidence 555556667777 445555555554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-05 Score=82.78 Aligned_cols=229 Identities=10% Similarity=0.032 Sum_probs=134.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC----C
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----Q 231 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~----~ 231 (732)
.|+|+. ...|.++|+++ .....+... ......+.|+++++.|+++... ...|+++++++ .
T Consensus 3 ~ll~~~--~~~I~~i~~~~--~~~~~~~~~----~~~p~g~~~d~~~~~ly~~D~~--------~~~I~~~~~~g~~~~~ 66 (316)
T 1ijq_A 3 YLFFTN--RHEVRKMTLDR--SEYTSLIPN----LRNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVS 66 (316)
T ss_dssp EEEEEC--BSSEEEEETTS--CCCEEEECS----CSSEEEEEEETTTTEEEEEETT--------TTEEEEEEC-------
T ss_pred EEEEEC--CCeEEEEECCC--cceEehhcC----CCceEEEEEEeCCCEEEEEECC--------CCcEEEEECCCCCCCc
Confidence 366774 34599999987 555544433 1233567899998886666432 26899999987 2
Q ss_pred CccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 232 NIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 232 ~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
. .+.+. .+.....+.+++++++.|+++... ...|.+++++ +... ..++.... ..+..++.+|
T Consensus 67 ~---~~~~~~~~~~~p~glavd~~~~~ly~~d~~-------~~~I~~~~~~-g~~~--~~~~~~~~----~~P~~iavdp 129 (316)
T 1ijq_A 67 S---YDTVISRDIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTK-GVKR--KTLFRENG----SKPRAIVVDP 129 (316)
T ss_dssp ----CEEEECSSCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETT-SSSE--EEEEECTT----CCEEEEEEET
T ss_pred c---cEEEEeCCCCCcCEEEEeecCCeEEEEECC-------CCEEEEEeCC-CCce--EEEEECCC----CCcceEEeCC
Confidence 3 33333 222333456788888889887632 3469999986 3332 22333222 3456778888
Q ss_pred CCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC
Q 004735 311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (732)
Q Consensus 311 Dg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~ 389 (732)
++. |||. +. .....|+++++++...+.+.... ..|. +.+.+.+ +++.|||+.. +...|++++++
T Consensus 130 ~~g~ly~~-d~-~~~~~I~~~~~dG~~~~~~~~~~-----~~~P---~gla~d~---~~~~lY~~D~--~~~~I~~~d~d 194 (316)
T 1ijq_A 130 VHGFMYWT-DW-GTPAKIKKGGLNGVDIYSLVTEN-----IQWP---NGITLDL---LSGRLYWVDS--KLHSISSIDVN 194 (316)
T ss_dssp TTTEEEEE-EC-SSSCEEEEEETTSCCEEEEECSS-----CSCE---EEEEEET---TTTEEEEEET--TTTEEEEEETT
T ss_pred CCCEEEEE-cc-CCCCeEEEEcCCCCCeEEEEECC-----CCCc---eEEEEec---cCCEEEEEEC--CCCeEEEEecC
Confidence 666 6654 44 22367999999876655554321 1121 1233322 5788888763 34578999998
Q ss_pred CCceEEeccC---CCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 390 GHSLSLLDIP---FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 390 ~~~~~~lt~~---~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
++..+.+... ......+..+++.+++.-. ....|++++..+|+
T Consensus 195 g~~~~~~~~~~~~~~~P~giav~~~~ly~~d~---~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 195 GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS 240 (316)
T ss_dssp SCSCEEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred CCceEEEeecCCccCCcEEEEEECCEEEEEEC---CCCeEEEEeCCCCc
Confidence 8766655432 2234455445666655442 33578888876654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.62 E-value=7e-07 Score=104.72 Aligned_cols=198 Identities=7% Similarity=-0.071 Sum_probs=120.6
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
....++|||||++|++...+ ..|.++|+.+++. ...+......+....|||||++|+..+ .
T Consensus 15 ~v~~i~~sp~~~~la~~~~~---------g~v~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~ 75 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYS---------GRVEIWNYETQVE--VRSIQVTETPVRAGKFIARKNWIIVGS--------D 75 (814)
T ss_dssp CEEEEEECSSSSEEEEEETT---------SEEEEEETTTTEE--EEEEECCSSCEEEEEEEGGGTEEEEEE--------T
T ss_pred ceEEEEECCCCCEEEEEeCC---------CEEEEEECCCCce--EEEEecCCCcEEEEEEeCCCCEEEEEe--------C
Confidence 45677899999987776542 5788999988761 344554556677899999999998876 2
Q ss_pred ccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCC-eEE-EecccccccCC
Q 004735 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN-EVL-AIYSLDAEFSR 349 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g-~~~-~l~~~~~~~~~ 349 (732)
...|.++|+. +|+. ...+.+.. ..+..+.|+|||+.+++... .|. |.+++..++ ... .+......+..
T Consensus 76 dg~i~vw~~~-~~~~--~~~~~~~~----~~v~~~~~s~~~~~l~~~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 76 DFRIRVFNYN-TGEK--VVDFEAHP----DYIRSIAVHPTKPYVLSGSD-DLT--VKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp TSEEEEEETT-TCCE--EEEEECCS----SCEEEEEECSSSSEEEEEET-TSE--EEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred CCeEEEEECC-CCcE--EEEEecCC----CCEEEEEEeCCCCEEEEEcC-CCE--EEEEECCCCceEEEEEcCCCCcEEE
Confidence 3459999998 6754 44455544 56788999999994444444 454 455566554 333 33222222223
Q ss_pred CceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEeccCC-CceEEe-eEe--CCEEEEEEeCCCCCc
Q 004735 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPF-TDIDNI-TLG--NDCLFVEGASGVEPS 424 (732)
Q Consensus 350 ~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~~-~~v~~~-~~~--~~~~~~~~~~~~~~~ 424 (732)
..|++ +++.++++...++.-.+| ++.++.. ..+.... ..+..+ ..+ ++.+++.++.. .
T Consensus 146 ~~~~p------------~~~~~l~~~~~dg~v~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g 208 (814)
T 3mkq_A 146 VAFNP------------KDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD---L 208 (814)
T ss_dssp EEEET------------TEEEEEEEEETTSEEEEE--ETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT---S
T ss_pred EEEEc------------CCCCEEEEEeCCCeEEEE--ECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC---C
Confidence 33432 355566666667765555 6555443 3333322 444444 222 45555555432 3
Q ss_pred EEEEEEcCCCc
Q 004735 425 SVAKVTLDDHK 435 (732)
Q Consensus 425 ~ly~~dl~~~~ 435 (732)
.+.++|+.+++
T Consensus 209 ~i~~~d~~~~~ 219 (814)
T 3mkq_A 209 TIKIWDYQTKS 219 (814)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCc
Confidence 67788877665
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-06 Score=93.42 Aligned_cols=239 Identities=8% Similarity=-0.089 Sum_probs=125.4
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC--CCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN--GQN 232 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~--~~~ 232 (732)
.+++++..++.|+++|.++ ++.. .+..+ .....+.+||||++++. .... ..|+++|+. +++
T Consensus 168 ~~~V~~~~~~~V~viD~~t--~~v~~~i~~g-----~~p~~v~~SpDGr~lyv-~~~d--------g~V~viD~~~~t~~ 231 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGST--YEIKTVLDTG-----YAVHISRLSASGRYLFV-IGRD--------GKVNMIDLWMKEPT 231 (567)
T ss_dssp EEEEEETTTTEEEEEETTT--CCEEEEEECS-----SCEEEEEECTTSCEEEE-EETT--------SEEEEEETTSSSCC
T ss_pred eEEEEeCCCCeEEEEECCC--CeEEEEEeCC-----CCccceEECCCCCEEEE-EcCC--------CeEEEEECCCCCCc
Confidence 5666777778999999987 5433 34433 12236789999998554 4321 589999995 554
Q ss_pred ccccEEcccCCCceeccccC----CCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecC--------------
Q 004735 233 IQEPKVLVSGSDFYAFPRMD----PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-------------- 294 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~S----PDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~-------------- 294 (732)
. +..+..+.. -.+..+| |||++++...... ..+.++|.. +.+......+.+
T Consensus 232 ~--v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~-------~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~rv 300 (567)
T 1qks_A 232 T--VAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWP-------PQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRV 300 (567)
T ss_dssp E--EEEEECCSE-EEEEEECCSTTCTTTEEEEEEEET-------TEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCE
T ss_pred E--eEEEecCCC-CceeEEccccCCCCCEEEEEEccC-------CeEEEEECC-CCcEEEEEeccccccccccccCCCce
Confidence 1 344443332 3457899 7999887654221 235555543 333211110000
Q ss_pred ---------------------------CC----------CCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeE
Q 004735 295 ---------------------------FD----------PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 295 ---------------------------~~----------~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
.+ .. .......|+|||+.+++++. +...|..+|.++++.
T Consensus 301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~--~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE--RFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKL 376 (567)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC--SSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEE
T ss_pred EEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc--ccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcE
Confidence 00 00 12234579999995555554 234588899999876
Q ss_pred EEecccccccCCCceeecccceee-eeecCCCCEEEEEEEECCEEEEEEEECCCC--------ceEEeccC-CCceEEee
Q 004735 338 LAIYSLDAEFSRPLWVFGINSYEI-IQSHGEKNLIACSYRQNGRSYLGILDDFGH--------SLSLLDIP-FTDIDNIT 407 (732)
Q Consensus 338 ~~l~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~--------~~~~lt~~-~~~v~~~~ 407 (732)
....+-. ...+.++. ...| .+ +++.++++++ -+...|.+++.+++ .++.+... ...+.--.
T Consensus 377 ~~~i~vg----g~~Phpg~-g~~~~~p---~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~ 447 (567)
T 1qks_A 377 VAIEDTG----GQTPHPGR-GANFVHP---TFGPVWATSH-MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT 447 (567)
T ss_dssp EEEEECS----SSSBCCTT-CEEEEET---TTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred EEEEecc----CcCCCCcc-ceeeECC---CCCcEEEeCC-CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe
Confidence 5444220 11111110 1112 11 4566655543 33345777777762 23444332 22111113
Q ss_pred EeCCEEEEEEeCCCC----CcEEEEEEcCCC
Q 004735 408 LGNDCLFVEGASGVE----PSSVAKVTLDDH 434 (732)
Q Consensus 408 ~~~~~~~~~~~~~~~----~~~ly~~dl~~~ 434 (732)
.++++.+|+...... ...|.++|+++.
T Consensus 448 ~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 448 HPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 445555555442221 236889988765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-05 Score=83.73 Aligned_cols=258 Identities=9% Similarity=-0.007 Sum_probs=133.8
Q ss_pred ccCceEEcC-CCcEEEEeecC------CCCCceEEEEcCCCCCCCCcccCCCCCccccc-ccccCCceeEEECCEEEEEe
Q 004735 90 RLGGTAVDG-HGRLIWLESRP------TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT-AQEYGGGAFRIFGDTVIFSN 161 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~-~~~~g~~~~~~~~~~i~f~~ 161 (732)
.+ ++.++| |+.+|...... ..++ .+..++..++ +...-++-+...+.. ........+++++..+++.+
T Consensus 68 ~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~--~v~viD~~t~-~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 68 LP-NPVAAHSGSEFALASTSFSRIAKGKRTD--YVEVFDPVTF-LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred CC-CeEECCCCCEEEEEeccccccccCCCCC--eEEEEECCCC-cEEEEEECCCccccccCCCccceEECCCCCEEEEEe
Confidence 45 899999 88888876321 1112 2444555433 221111110000100 00111234555666888877
Q ss_pred CC-CCeEEEEeCCCCCCCceec-CCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE-E
Q 004735 162 YK-DQRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-V 238 (732)
Q Consensus 162 ~~-~~~l~~~d~~~~~~~~~~l-t~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~ 238 (732)
.. .+.|+++| ++ ++.... .+.+ ..+.+.|+|++.++..... ..+.+++. +++ .. .
T Consensus 144 ~~~~~~v~viD-~t--~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~d--------g~~~~vd~-~g~---~~~~ 201 (373)
T 2mad_H 144 FAAGPAVGLVV-QG--GSSDDQLLSSP-------TCYHIHPGAPSTFYLLCAQ--------GGLAKTDH-AGG---AAGA 201 (373)
T ss_pred cCCCCeEEEEE-CC--CCEEeEEcCCC-------ceEEEEeCCCceEEEEcCC--------CCEEEEEC-CCc---EEEE
Confidence 54 57899999 87 554433 3321 1134567777654443321 45667777 555 22 1
Q ss_pred cc------cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe---cCC--CCCcc-ccCcCc
Q 004735 239 LV------SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV---AGF--DPTIV-ESPTEP 306 (732)
Q Consensus 239 lt------~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~---~~~--~~~~~-~~~~~~ 306 (732)
.. ........|.+++|+.+++|+. . ...++++|+. +++......+ ... ...|. .....+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~-------~~~v~vid~~-~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPV-Y-------SGKILQADIS-AAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEc-C-------CceEEEEecc-CCcceEeeeeeecCCcccccceecCceEeE
Confidence 11 1111234578899999998886 2 2359999997 4432211211 110 00000 111225
Q ss_pred eeCCCCc-EEEEEecc------CCeeeEEEEeccCCeE-EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC
Q 004735 307 KWSSKGE-LFFVTDRK------NGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (732)
Q Consensus 307 ~wspDg~-l~~~~~~~------~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~ 378 (732)
.++|||+ +|+..... .+...|+++|+++++. +.|. ........ .|.+ |++.+++..+.
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i---------~~s~---Dg~~~l~v~~~- 338 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAI---------SVAQ---DGGPDLYALSA- 338 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeE---------EECC---CCCeEEEEEcC-
Confidence 7889988 65544321 1234799999999876 4453 22112222 3333 77745555542
Q ss_pred CEEEEEEEECCCCceEEe
Q 004735 379 GRSYLGILDDFGHSLSLL 396 (732)
Q Consensus 379 g~~~ly~~~~~~~~~~~l 396 (732)
+...|+++|.+++++...
T Consensus 339 ~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 339 GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCCeEEEEECCCCCEEee
Confidence 235788999998876543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-06 Score=88.71 Aligned_cols=206 Identities=10% Similarity=0.070 Sum_probs=121.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCC---CCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKA---GDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~ 164 (732)
..+.++.|++ ++.+||++... + .|++.+..+ |...+.+.+.. +....+.++.+.++.|++.+...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~---~--~I~~~~~~g~~~~~~~~~~~~~~------~~~p~glavd~~~~~ly~~d~~~ 98 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQ---R--MICSTQLDRAHGVSSYDTVISRD------IQAPDGLAVDWIHSNIYWTDSVL 98 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTT---T--EEEEEEC--------CEEEECSS------CSCCCEEEEETTTTEEEEEETTT
T ss_pred CceEEEEEEeCCCEEEEEECCC---C--cEEEEECCCCCCCcccEEEEeCC------CCCcCEEEEeecCCeEEEEECCC
Confidence 4678999999 89999999742 3 466666552 11222222211 11112223333467899998888
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGS 243 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~ 243 (732)
+.|.++++++ ...+.+.... .....+.+++|++.+|+++.... ...|+++++++.. .+.+. ..-
T Consensus 99 ~~I~~~~~~g--~~~~~~~~~~---~~~P~~iavdp~~g~ly~~d~~~-------~~~I~~~~~dG~~---~~~~~~~~~ 163 (316)
T 1ijq_A 99 GTVSVADTKG--VKRKTLFREN---GSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVD---IYSLVTENI 163 (316)
T ss_dssp TEEEEEETTS--SSEEEEEECT---TCCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCC---EEEEECSSC
T ss_pred CEEEEEeCCC--CceEEEEECC---CCCcceEEeCCCCCEEEEEccCC-------CCeEEEEcCCCCC---eEEEEECCC
Confidence 8999999986 5444444321 22346778999888866654311 2589999998765 44443 233
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 323 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g 323 (732)
..-.+.+++|++++|+|.... ...|+++|++ +... ..+....... ..+..++.. ++.+|+ ++. +
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~-------~~~I~~~d~d-g~~~--~~~~~~~~~~--~~P~giav~-~~~ly~-~d~--~ 227 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSK-------LHSISSIDVN-GGNR--KTILEDEKRL--AHPFSLAVF-EDKVFW-TDI--I 227 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETT-------TTEEEEEETT-SCSC--EEEEECTTTT--SSEEEEEEE-TTEEEE-EET--T
T ss_pred CCceEEEEeccCCEEEEEECC-------CCeEEEEecC-CCce--EEEeecCCcc--CCcEEEEEE-CCEEEE-EEC--C
Confidence 445678899999999888632 3569999987 3322 2222221100 233445553 233665 444 4
Q ss_pred eeeEEEEeccCCe
Q 004735 324 FWNLHKWIESNNE 336 (732)
Q Consensus 324 ~~~l~~~d~~~g~ 336 (732)
...|.+++..+|+
T Consensus 228 ~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 228 NEAIFSANRLTGS 240 (316)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCeEEEEeCCCCc
Confidence 4578889886654
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-08 Score=112.50 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=82.1
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHC-CCEEEEEcCCCCC-CCChhhHHhhccCC
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSR-GWAFVDVNYGGST-GYGREFRERLLGRW 550 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~-G~~v~~~d~rG~~-g~g~~~~~~~~~~~ 550 (732)
.+...+|.|...... ...++.|+||++|||++...... +.. ..|+++ |++|+.+|||-.. |+...-.... -
T Consensus 111 cL~l~v~~P~~~~~~-~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl~~~Gfl~~~~~~~---~ 184 (574)
T 3bix_A 111 CLYLNIYVPTEDDIR-DSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRLGVLGFLSTGDQAA---K 184 (574)
T ss_dssp CCEEEEEEEC---------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCCHHHHHCCCSSSSC---C
T ss_pred CCEEEEEECCCCCcC-CCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcCcccccCcCCCCCC---C
Confidence 355567778652100 01345799999999875543332 222 345554 7999999999422 1100000001 1
Q ss_pred CcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-C--C-CcceEEEeecCc
Q 004735 551 GIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F--R-DTFKAGASLYGV 607 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~--p-~~~~a~v~~~~~ 607 (732)
+...+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++. . . .+|+.+|+.+|.
T Consensus 185 ~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 185 GNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 223489999999999875 3579999999999999999988876 2 2 579999998863
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.60 E-value=6.3e-06 Score=88.77 Aligned_cols=256 Identities=9% Similarity=0.063 Sum_probs=142.3
Q ss_pred ccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCC-cccccccccCCceeEEECC--EEEEEe
Q 004735 86 GASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEY-AVRTTAQEYGGGAFRIFGD--TVIFSN 161 (732)
Q Consensus 86 ~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~-~~~~~~~~~g~~~~~~~~~--~i~f~~ 161 (732)
.....+..++|+| ++.+..+-. .+|...+|....... ... ...... ......+...+.++.++.+ .++++.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~---~dg~V~vwd~~~~~~-~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKT---PSSDVLVFDYTKHPS-KPE-PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEEC---SSSCEEEEEGGGSCS-SCC-TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred cCCCcEEEEEECCCCCcEEEEEC---CCCcEEEEECCCccc-ccC-ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3345678899998 566666544 357777787753200 000 000000 0011112223455666543 266777
Q ss_pred CCCCeEEEEeCCCCCCC-------ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-
Q 004735 162 YKDQRLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI- 233 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~-------~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~- 233 (732)
..++.|.++++..+ +. ...+... .....+.+|+|++..++++.... ..|.++|+.++..
T Consensus 201 ~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~h----~~~v~~v~~~p~~~~~l~s~~~d--------g~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 201 SDDHTICLWDINAT-PKEHRVIDAKNIFTGH----TAVVEDVAWHLLHESLFGSVADD--------QKLMIWDTRNNNTS 267 (430)
T ss_dssp CTTSCEEEEETTSC-CBGGGEEECSEEECCC----SSCEEEEEECSSCTTEEEEEETT--------SEEEEEETTCSCSS
T ss_pred eCCCeEEEEeCCCC-CCCCceeccceeecCC----CCCEeeeEEeCCCCCEEEEEeCC--------CeEEEEECCCCCCC
Confidence 77889999999752 11 1222222 33456788999555445554432 5899999987520
Q ss_pred cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
.....+......+....|+|+|+.++.+... ...|.++|+...+.. +..+.... ..+..+.|+|+|+
T Consensus 268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~-------dg~v~vwd~~~~~~~--~~~~~~h~----~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSA-------DKTVALWDLRNLKLK--LHSFESHK----DEIFQVQWSPHNE 334 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEET-------TSEEEEEETTCTTSC--SEEEECCS----SCEEEEEECSSCT
T ss_pred cceeEeecCCCCeEEEEeCCCCCCEEEEEeC-------CCeEEEEeCCCCCCC--eEEeecCC----CCEEEEEECCCCC
Confidence 0133343444556778999999976555422 345999999722332 44444444 5678899999998
Q ss_pred -EEEEEeccCCeeeEEEEeccC-CeE-----------EEec---ccccccCCCceeecccceeeeeecCCCCEEEEEEEE
Q 004735 314 -LFFVTDRKNGFWNLHKWIESN-NEV-----------LAIY---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (732)
Q Consensus 314 -l~~~~~~~~g~~~l~~~d~~~-g~~-----------~~l~---~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~ 377 (732)
++++... .+.-.|| |+.. ++. +.+. .....+ ..+.|.+ ++..++++...
T Consensus 335 ~~l~s~~~-d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------~~~~~~p---~~~~~l~s~s~ 399 (430)
T 2xyi_A 335 TILASSGT-DRRLHVW--DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------SDFSWNP---NEPWIICSVSE 399 (430)
T ss_dssp TEEEEEET-TSCCEEE--EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------EEEEECS---SSTTEEEEEET
T ss_pred CEEEEEeC-CCcEEEE--eCCCCccccCccccccCCcceEEEcCCCCCCc---------eEEEECC---CCCCEEEEEEC
Confidence 7776665 5554555 4443 110 1111 111112 2334443 56657777777
Q ss_pred CCEEEEEEEE
Q 004735 378 NGRSYLGILD 387 (732)
Q Consensus 378 ~g~~~ly~~~ 387 (732)
++.-+||.++
T Consensus 400 dg~i~iw~~~ 409 (430)
T 2xyi_A 400 DNIMQVWQMA 409 (430)
T ss_dssp TSEEEEEEEC
T ss_pred CCCEEEeEcc
Confidence 8888888764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-05 Score=83.29 Aligned_cols=149 Identities=14% Similarity=0.144 Sum_probs=90.6
Q ss_pred CceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 147 ~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+.+..++++ .++++...++.|.++|+.+ ++. +.+... .......+|+|||++|+....+ ..|.
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~~~d---------~~i~ 143 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRT--GTTYKRFVGH----QSEVYSVAFSPDNRQILSAGAE---------REIK 143 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTS--SCEEEEEECC----CSCEEEEEECSSTTEEEEEETT---------SCEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCC--CcEEEEEcCC----CCcEEEEEECCCCCEEEEEcCC---------CEEE
Confidence 334455433 4566767788999999987 443 344433 3345678899999987655442 4677
Q ss_pred EEEcCCCCccccEEcc---cCCCceeccccCCCC----------CeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE
Q 004735 225 AIALNGQNIQEPKVLV---SGSDFYAFPRMDPRG----------ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC 291 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt---~~~~~~~~p~~SPDG----------~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~ 291 (732)
++|+.+.. ...+. .....+...+|+|++ ..|+-.+. ...|.++|.. ++. ...
T Consensus 144 ~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~--------d~~i~iwd~~--~~~--~~~ 208 (343)
T 2xzm_R 144 LWNILGEC---KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW--------DGRLKVWNTN--FQI--RYT 208 (343)
T ss_dssp EEESSSCE---EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET--------TSEEEEEETT--TEE--EEE
T ss_pred EEeccCCc---eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC--------CCEEEEEcCC--Cce--eEE
Confidence 78887543 22222 223345567788887 55655542 3458888843 332 334
Q ss_pred ecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEec
Q 004735 292 VAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 292 ~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~ 332 (732)
+.+.. ..+..+.|+|||+++++... .+. |.++|+
T Consensus 209 ~~~h~----~~v~~~~~s~~g~~l~sgs~-dg~--v~iwd~ 242 (343)
T 2xzm_R 209 FKAHE----SNVNHLSISPNGKYIATGGK-DKK--LLIWDI 242 (343)
T ss_dssp EECCS----SCEEEEEECTTSSEEEEEET-TCE--EEEEES
T ss_pred EcCcc----ccceEEEECCCCCEEEEEcC-CCe--EEEEEC
Confidence 44444 56778899999995555544 454 555565
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-05 Score=82.74 Aligned_cols=237 Identities=8% Similarity=0.029 Sum_probs=134.6
Q ss_pred ceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 148 ~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.+..++++ ..+++...++.|.++|..+ +.. ..+... .......+|+|+|+.++....+ ..+.+
T Consensus 68 ~~~~~s~d~~~l~s~s~Dg~v~vWd~~~--~~~~~~~~~~----~~~v~~~~~sp~g~~lasg~~d---------~~i~v 132 (354)
T 2pbi_B 68 LCMDWCKDKRRIVSSSQDGKVIVWDSFT--TNKEHAVTMP----CTWVMACAYAPSGCAIACGGLD---------NKCSV 132 (354)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECS----SSCCCEEEECTTSSEEEEESTT---------SEEEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCC--CCcceEEecC----CCCEEEEEECCCCCEEEEeeCC---------CCEEE
Confidence 34444433 5566777888999999876 433 333322 2234667899999986655332 35555
Q ss_pred EEcCCCC----ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 226 IALNGQN----IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 226 ~d~~~~~----~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
+++.... ......+......+....|+||+++|+-.+ ....|.++|+. +|+. +..+.+.. .
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s--------~D~~v~lwd~~-~~~~--~~~~~~h~----~ 197 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS--------GDGTCALWDVE-SGQL--LQSFHGHG----A 197 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE--------TTSEEEEEETT-TCCE--EEEEECCS----S
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe--------CCCcEEEEeCC-CCeE--EEEEcCCC----C
Confidence 6654321 001223333344566789999999988666 23458899998 7765 44555543 4
Q ss_pred cCcCceeCC--CCcEEEEEeccCCeeeEEEEeccCCeEEEecc-cccccCCCceeecccceeeeeecCCCCEEEEEEEEC
Q 004735 302 SPTEPKWSS--KGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (732)
Q Consensus 302 ~~~~~~wsp--Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~ 378 (732)
.+....|+| +|+++++... .+ .|.++|+.+++...... ....+. .+.|.+ +++ ++++...+
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~-Dg--~v~~wd~~~~~~~~~~~~h~~~v~---------~v~~~p---~~~-~l~s~s~D 261 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGC-DK--KAMVWDMRSGQCVQAFETHESDVN---------SVRYYP---SGD-AFASGSDD 261 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEET-TS--CEEEEETTTCCEEEEECCCSSCEE---------EEEECT---TSS-EEEEEETT
T ss_pred CeEEEEEEeCCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCCeE---------EEEEeC---CCC-EEEEEeCC
Confidence 455667766 5665555544 34 46667887776544332 222222 233432 555 44555567
Q ss_pred CEEEEEEEECCCCceEE-eccC--CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 379 GRSYLGILDDFGHSLSL-LDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 379 g~~~ly~~~~~~~~~~~-lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.-+|| |+.+++... +... ...+..+ ...++.+++.++.. ..+.++|+.+++
T Consensus 262 ~~v~lw--d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d---~~i~vwd~~~~~ 317 (354)
T 2pbi_B 262 ATCRLY--DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND---YTINVWDVLKGS 317 (354)
T ss_dssp SCEEEE--ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT---SCEEEEETTTCS
T ss_pred CeEEEE--ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC---CcEEEEECCCCc
Confidence 766666 665554332 2222 1234444 34455666665533 357888887665
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-06 Score=88.62 Aligned_cols=241 Identities=7% Similarity=-0.028 Sum_probs=131.3
Q ss_pred ceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCC--CCEEEEEEeccCCCCCCceeEE
Q 004735 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 148 ~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~~l 223 (732)
.+.+++.+ ..+++...++.|.++++..+.+.. +.+... ........|+|+ |+.|+....+ ..|
T Consensus 15 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~~d---------g~v 81 (379)
T 3jrp_A 15 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKV 81 (379)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SCE
T ss_pred EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC----CCcEEEEEeCCCCCCCEEEEeccC---------CEE
Confidence 34444433 344455567778888886310222 233332 334567789987 8876655442 467
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCC--CCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPD--G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
.++|+.+++......+......+....|+|+ |+.|+... ....|.++|+. ++.......+.... .
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~d~~i~v~d~~-~~~~~~~~~~~~~~----~ 148 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--------SDGKVSVVEFK-ENGTTSPIIIDAHA----I 148 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--------TTSEEEEEECC-TTSCCCEEEEECCT----T
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec--------CCCcEEEEecC-CCCceeeEEecCCC----C
Confidence 7888887641113334444556778899999 89887766 23458999998 55332233344443 5
Q ss_pred cCcCceeCC-------------CCcEEEEEeccCCeeeEEEEeccCCe--EEE---ecccccccCCCceeecccceeeee
Q 004735 302 SPTEPKWSS-------------KGELFFVTDRKNGFWNLHKWIESNNE--VLA---IYSLDAEFSRPLWVFGINSYEIIQ 363 (732)
Q Consensus 302 ~~~~~~wsp-------------Dg~l~~~~~~~~g~~~l~~~d~~~g~--~~~---l~~~~~~~~~~~w~~~~~~~~~~~ 363 (732)
.+..+.|+| |+++++.... .+. |.++|+.+++ ... +......+....|++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp--------- 216 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGA-DNL--VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP--------- 216 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEET-TSC--EEEEEEETTTTEEEEEEEECCCSSCEEEEEECC---------
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeC-CCe--EEEEEecCCCcceeeEEEEecccCcEeEEEECC---------
Confidence 677889999 6775555544 454 4455554432 112 211222222333432
Q ss_pred ecCCC--CEEEEEEEECCEEEEEEEECCCCc-eEEec-c--CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 364 SHGEK--NLIACSYRQNGRSYLGILDDFGHS-LSLLD-I--PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 364 ~~~~~--~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt-~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
++ +.++++...++.-.||-++..... ...+. . ....+..+ ..+++.+++.++. ++.-.+|.++
T Consensus 217 ---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~ 286 (379)
T 3jrp_A 217 ---TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 286 (379)
T ss_dssp ---CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEE
T ss_pred ---CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCC
Confidence 43 566677777887777755432211 22222 2 33446666 4455556555554 3333444444
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.6e-07 Score=94.93 Aligned_cols=221 Identities=9% Similarity=0.021 Sum_probs=115.4
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC-ccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~ 235 (732)
++++...++.|.++++.+ +..+.+..-.+ +.......+|+|||++|+....+ ..|.++|+.+++ ...
T Consensus 25 ~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d---------~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 25 EFVTTTATNQVELYEQDG--NGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCSQD---------RNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp EEECCCSSSCBCEEEEET--TEEEECCCBCC-CSSCEEEEEECTTTCCEEEEETT---------SSEEEC------CCCC
T ss_pred EEEEecCCCEEEEEEccC--CceEEEEEEec-CCceEEEEEEeCCCCEEEEEeCC---------CeEEEEEcCCCCceee
Confidence 444444567788888876 42222221110 13456778899999987665542 357777877653 111
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecC-CCCCccccCcCceeCCCCc
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAG-FDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~-~~~~~~~~~~~~~wspDg~ 313 (732)
...+......+....|+|||+.|+..+.+ ..|.++|+. +++ ......+.. .. ..+..+.|+|||+
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGA--------RVISVCYFE-QENDWWVSKHLKRPLR----STILSLDWHPNNV 159 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESS--------SCEEECCC------CCCCEEECSSCC----SCEEEEEECTTSS
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecC--------CeEEEEEEC-CcccceeeeEeecccC----CCeEEEEEcCCCC
Confidence 33444445566778999999999877632 338888887 443 111344444 33 5678899999999
Q ss_pred EEEEEeccCCeeeEEEEeccCCe----------------EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEE
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNE----------------VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~----------------~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~ 377 (732)
++++... .+.-.+| |+..++ .+.+... ....+ ...+.|.+ +++.| ++...
T Consensus 160 ~l~~~~~-d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----v~~~~~sp---~~~~l-~~~~~ 225 (377)
T 3dwl_C 160 LLAAGCA-DRKAYVL--SAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGW-----VHAVGFSP---SGNAL-AYAGH 225 (377)
T ss_dssp EEEEEES-SSCEEEE--EECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSS-----EEEEEECT---TSSCE-EEEET
T ss_pred EEEEEeC-CCEEEEE--EEEecccCCCccccccccccchhhhhhcc--cCCce-----EEEEEECC---CCCEE-EEEeC
Confidence 5445444 4554444 443221 0111100 00111 12334443 55544 45556
Q ss_pred CCEEEEEEEECCCCc-----eEEeccCCCceEEe-eEeCCEEEEEEe
Q 004735 378 NGRSYLGILDDFGHS-----LSLLDIPFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 378 ~g~~~ly~~~~~~~~-----~~~lt~~~~~v~~~-~~~~~~~~~~~~ 418 (732)
++.-.||-+ .+++ ...+......+..+ ..+++.+++.++
T Consensus 226 d~~i~iwd~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 226 DSSVTIAYP--SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp TTEEC-CEE--CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred CCcEEEEEC--CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence 776666654 4444 34455555567777 456677665543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-05 Score=82.97 Aligned_cols=287 Identities=13% Similarity=0.051 Sum_probs=153.5
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCC
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~ 165 (732)
...+.+++|+| ++.+..+-. .++...+|...... ..... +.. .-..+...+.+..++++ ..+++...++
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s---~D~~i~vWd~~~~~--~~~~~-~~~---~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSAS---RDKTIIMWKLTRDE--TNYGI-PQR---ALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEE---TTSCEEEEEECCSS--SCSEE-EEE---EECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCEEEEEEeCCCCCEEEEEc---CCCeEEEEECCCCC--cccce-eeE---EEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 34567899999 666666655 34777888765431 11000 000 00012223444555543 5556666788
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc--cCC
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGS 243 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt--~~~ 243 (732)
.|..++... .......... ........++|+++.|+....+ ..+.++|+.+.. ..... ...
T Consensus 109 ~i~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~s~d---------~~~~~~d~~~~~---~~~~~~~~~~ 171 (340)
T 4aow_A 109 TLRLWDLTT--GTTTRRFVGH---TKDVLSVAFSSDNRQIVSGSRD---------KTIKLWNTLGVC---KYTVQDESHS 171 (340)
T ss_dssp EEEEEETTT--TEEEEEEECC---SSCEEEEEECTTSSCEEEEETT---------SCEEEECTTSCE---EEEECSSSCS
T ss_pred cceEEeecc--cceeeeecCC---CCceeEEEEeecCccceeecCC---------CeEEEEEeCCCc---eEEEEecccc
Confidence 899999875 3322222111 1223445689999986655442 356667776543 22221 223
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 323 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g 323 (732)
.......|++++...+++.... ...|.++|+. +++. ...+.+.. ..+..+.|+|||+++++... .+
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~-~~~~--~~~~~~h~----~~v~~~~~s~~~~~l~s~s~-Dg 237 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGW------DKLVKVWNLA-NCKL--KTNHIGHT----GYLNTVTVSPDGSLCASGGK-DG 237 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEET------TSCEEEEETT-TTEE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TC
T ss_pred CcccceEEccCCCCcEEEEEcC------CCEEEEEECC-CCce--eeEecCCC----CcEEEEEECCCCCEEEEEeC-CC
Confidence 4455678888876554444232 2238888988 6654 44455554 56778899999995555544 44
Q ss_pred eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE-Eecc----
Q 004735 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDI---- 398 (732)
Q Consensus 324 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~-~lt~---- 398 (732)
. |.++|+.+++..........+. .+.|. +++.++..+ .++. |.+++++++... .+..
T Consensus 238 ~--i~iwd~~~~~~~~~~~~~~~v~---------~~~~~----~~~~~~~~~-~d~~--i~iwd~~~~~~~~~~~~~~~~ 299 (340)
T 4aow_A 238 Q--AMLWDLNEGKHLYTLDGGDIIN---------ALCFS----PNRYWLCAA-TGPS--IKIWDLEGKIIVDELKQEVIS 299 (340)
T ss_dssp E--EEEEETTTTEEEEEEECSSCEE---------EEEEC----SSSSEEEEE-ETTE--EEEEETTTTEEEEEECCC---
T ss_pred e--EEEEEeccCceeeeecCCceEE---------eeecC----CCCceeecc-CCCE--EEEEECCCCeEEEecccccee
Confidence 4 5666777766544333221111 22333 344444444 4555 444577665432 2221
Q ss_pred -----CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 399 -----PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 399 -----~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
....|..+ ..+++++++.++.. ..|+++|+++|+
T Consensus 300 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D---g~v~iW~~~tGt 339 (340)
T 4aow_A 300 TSSKAEPPQCTSLAWSADGQTLFAGYTD---NLVRVWQVTIGT 339 (340)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEETT---SCEEEEEEEC--
T ss_pred eeccCCCCCEEEEEECCCCCEEEEEeCC---CEEEEEeCCCcC
Confidence 13345666 44555666655543 246777777764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.9e-07 Score=92.15 Aligned_cols=232 Identities=11% Similarity=0.012 Sum_probs=138.1
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCC----ceecCCCCCCCCeEeeceeecCCCC-EEEEEEeccCCCCCCceeE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFN-RYVTVREDRRQDALNSTTE 222 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~~ 222 (732)
+..++++ ..+++...++.|.++++.+ +. .+.+... ......+.|+|+|+ .|+....+ ..
T Consensus 16 ~~~~s~~~~~l~~~~~d~~v~iw~~~~--~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d---------g~ 80 (342)
T 1yfq_A 16 DIKIIPSKSLLLITSWDGSLTVYKFDI--QAKNVDLLQSLRY----KHPLLCCNFIDNTDLQIYVGTVQ---------GE 80 (342)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEEEET--TTTEEEEEEEEEC----SSCEEEEEEEESSSEEEEEEETT---------SC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEeCC--CCccccceeeeec----CCceEEEEECCCCCcEEEEEcCC---------Ce
Confidence 3444432 3444555678899999876 54 3333322 33456778999999 76665432 57
Q ss_pred EEEEEc-CCCCccccEEccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC---------CceeeeE
Q 004735 223 IVAIAL-NGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN---------GDVYKRV 290 (732)
Q Consensus 223 l~~~d~-~~~~~~~~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~---------g~~~~~~ 290 (732)
|+++++ .+++ ...+.. ....+....|+| ++.|+..+. ...|.++|+. + ++. ..
T Consensus 81 i~~wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~--------d~~i~iwd~~-~~~~~~~~~~~~~--~~ 145 (342)
T 1yfq_A 81 ILKVDLIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASW--------DGLIEVIDPR-NYGDGVIAVKNLN--SN 145 (342)
T ss_dssp EEEECSSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEET--------TSEEEEECHH-HHTTBCEEEEESC--SS
T ss_pred EEEEEeccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcC--------CCeEEEEccc-ccccccccccCCe--ee
Confidence 899999 8887 667766 566677889999 888876652 3458888887 4 332 22
Q ss_pred EecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC-CeE--EEec-ccccccCCCceeecccceeeeeecC
Q 004735 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NEV--LAIY-SLDAEFSRPLWVFGINSYEIIQSHG 366 (732)
Q Consensus 291 ~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~-g~~--~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~ 366 (732)
.+. .. ..+..+.|+|++ ++ +... .+ .|..+|+.+ +.. .... ...... ..+.|.
T Consensus 146 ~~~-~~----~~v~~~~~~~~~-l~-~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~i---------~~i~~~---- 202 (342)
T 1yfq_A 146 NTK-VK----NKIFTMDTNSSR-LI-VGMN-NS--QVQWFRLPLCEDDNGTIEESGLKYQI---------RDVALL---- 202 (342)
T ss_dssp SSS-SC----CCEEEEEECSSE-EE-EEES-TT--EEEEEESSCCTTCCCEEEECSCSSCE---------EEEEEC----
T ss_pred EEe-eC----CceEEEEecCCc-EE-EEeC-CC--eEEEEECCccccccceeeecCCCCce---------eEEEEC----
Confidence 222 22 456788999987 44 3333 34 466667766 432 2121 111111 223343
Q ss_pred C-CCEEEEEEEECCEEEEEEEECC-----CCceEEeccCCC---------ceEEe-eEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 367 E-KNLIACSYRQNGRSYLGILDDF-----GHSLSLLDIPFT---------DIDNI-TLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 367 ~-~~~l~~~s~~~g~~~ly~~~~~-----~~~~~~lt~~~~---------~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
. ++.++++...+|.-.||.++.. ......+..... .+..+ ..+++.+++.++.. ..|+++|
T Consensus 203 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~vwd 279 (342)
T 1yfq_A 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD---GIISCWN 279 (342)
T ss_dssp SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT---SCEEEEE
T ss_pred CCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC---ceEEEEc
Confidence 3 4456666667888888877665 233444444322 56666 44556666655533 3688889
Q ss_pred cCCCcc
Q 004735 431 LDDHKL 436 (732)
Q Consensus 431 l~~~~~ 436 (732)
+.+++.
T Consensus 280 ~~~~~~ 285 (342)
T 1yfq_A 280 LQTRKK 285 (342)
T ss_dssp TTTTEE
T ss_pred CccHhH
Confidence 887763
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.57 E-value=2.7e-06 Score=91.70 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=116.4
Q ss_pred cCCceeEEECC--EEEEEeCCCCeEEEEeCCCCC---------CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccC
Q 004735 145 YGGGAFRIFGD--TVIFSNYKDQRLYKHSIDSKD---------SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR 213 (732)
Q Consensus 145 ~g~~~~~~~~~--~i~f~~~~~~~l~~~d~~~~~---------~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 213 (732)
..+....+.++ .++++...++.|+++++.... .....+... .......+|+|+++.++++....
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~d- 203 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH----QKEGYGLSWNPNLNGYLLSASDD- 203 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC----SSCCCCEEECTTSTTEEEEECTT-
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC----CCCeEEEEeCCCCCCeEEEEeCC-
Confidence 34555666654 577777778889999986400 111222222 22346678999998334443322
Q ss_pred CCCCCceeEEEEEEcCCCCcc-----ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-ee
Q 004735 214 QDALNSTTEIVAIALNGQNIQ-----EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VY 287 (732)
Q Consensus 214 ~~~~~~~~~l~~~d~~~~~~~-----~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~ 287 (732)
..|.++++.++... ....+......+....|+|++..+++... ....|+++|+. ++. ..
T Consensus 204 -------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~-------~dg~i~i~d~~-~~~~~~ 268 (430)
T 2xyi_A 204 -------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA-------DDQKLMIWDTR-NNNTSK 268 (430)
T ss_dssp -------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE-------TTSEEEEEETT-CSCSSS
T ss_pred -------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe-------CCCeEEEEECC-CCCCCc
Confidence 57888898863200 01222333445667899995554544432 23459999998 442 12
Q ss_pred eeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC-e-EEEecccccccCCCceeecccceeeeee
Q 004735 288 KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-E-VLAIYSLDAEFSRPLWVFGINSYEIIQS 364 (732)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~w~~~~~~~~~~~~ 364 (732)
....+.... ..+..+.|+|+++ ++++... .|. |.++|+.+. + ...+......+....|++
T Consensus 269 ~~~~~~~~~----~~v~~i~~~p~~~~~l~tg~~-dg~--v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp---------- 331 (430)
T 2xyi_A 269 PSHTVDAHT----AEVNCLSFNPYSEFILATGSA-DKT--VALWDLRNLKLKLHSFESHKDEIFQVQWSP---------- 331 (430)
T ss_dssp CSEEEECCS----SCEEEEEECSSCTTEEEEEET-TSE--EEEEETTCTTSCSEEEECCSSCEEEEEECS----------
T ss_pred ceeEeecCC----CCeEEEEeCCCCCCEEEEEeC-CCe--EEEEeCCCCCCCeEEeecCCCCEEEEEECC----------
Confidence 233444443 5677899999998 7777665 554 555666652 2 333332222233334443
Q ss_pred cCCCCEEEEEEEECCEEEEEEEE
Q 004735 365 HGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 365 ~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
+++.++++...++.-.||-+.
T Consensus 332 --~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 332 --HNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp --SCTTEEEEEETTSCCEEEEGG
T ss_pred --CCCCEEEEEeCCCcEEEEeCC
Confidence 666777777777776666544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.9e-06 Score=86.08 Aligned_cols=256 Identities=9% Similarity=-0.044 Sum_probs=137.1
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCC-cccCCCCCcccccccccCCceeEE-ECCEEEEEeCCCCeE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRI-FGDTVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~l~~~~~~~~~~~~~~g~~~~~~-~~~~i~f~~~~~~~l 167 (732)
.+.++.++ ++++|...... +. +...+..++ +. ..+ +.. .....+++ .+++++++...++.|
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~---~~--v~viD~~t~-~~~~~i-~~~---------~~p~~i~~~~~g~lyv~~~~~~~v 107 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNS---HV--IFAIDINTF-KEVGRI-TGF---------TSPRYIHFLSDEKAYVTQIWDYRI 107 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGG---TE--EEEEETTTC-CEEEEE-ECC---------SSEEEEEEEETTEEEEEEBSCSEE
T ss_pred cceEEEEE-CCEEEEEEcCC---CE--EEEEECccc-EEEEEc-CCC---------CCCcEEEEeCCCeEEEEECCCCeE
Confidence 34556666 88888887532 33 555555544 32 222 111 01122334 345777776567889
Q ss_pred EEEeCCCCCCCce-ecCCCCCC-CCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE-cccCCC
Q 004735 168 YKHSIDSKDSSPL-PITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVSGSD 244 (732)
Q Consensus 168 ~~~d~~~~~~~~~-~lt~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-lt~~~~ 244 (732)
+++|+++ ++.. .+..+... .........+ ++++|+...... ...|+++|+++++ ... +..+ .
T Consensus 108 ~~iD~~t--~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~-------~~~v~viD~~t~~---~~~~i~~g-~ 172 (328)
T 3dsm_A 108 FIINPKT--YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSY-------QNRILKIDTETDK---VVDELTIG-I 172 (328)
T ss_dssp EEEETTT--TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTT-------CCEEEEEETTTTE---EEEEEECS-S
T ss_pred EEEECCC--CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCC-------CCEEEEEECCCCe---EEEEEEcC-C
Confidence 9999987 5443 33322100 0001234445 567654442211 2689999999887 433 3322 2
Q ss_pred ceeccccCCCCCeEEEEeccCC-CCCC--CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 245 FYAFPRMDPRGERMAWIEWHHP-NMPW--DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~-~~~~--~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
......++|||+ +++...... ..+| ....|+++|.+ ++++.....+... ..+..++++|||+.+|.++.
T Consensus 173 ~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~-t~~v~~~~~~~~g-----~~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 173 QPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAE-TFTVEKQFKFKLG-----DWPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp CBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETT-TTEEEEEEECCTT-----CCCEEEEECTTSCEEEEESS-
T ss_pred CccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECC-CCeEEEEEecCCC-----CCceeEEEecCCCEEEEEcc-
Confidence 234568899997 656553221 1111 13679999988 7776432222211 24568899999994444442
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEE--CCEEEEEEEECCCCceEEecc
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ--NGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~--~g~~~ly~~~~~~~~~~~lt~ 398 (732)
.|+++|+++++............. ...+.+.+ +++.||++... .+...|++++.++..+..+..
T Consensus 245 ----~v~~~d~~t~~~~~~~~~~~~~~~------p~gi~vdp---~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~ 310 (328)
T 3dsm_A 245 ----DIWRMPVEADRVPVRPFLEFRDTK------YYGLTVNP---NNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYV 310 (328)
T ss_dssp ----SEEEEETTCSSCCSSCSBCCCSSC------EEEEEECT---TTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEE
T ss_pred ----EEEEEECCCCceeeeeeecCCCCc------eEEEEEcC---CCCeEEEEcccccccCCEEEEECCCCCEEEEEEe
Confidence 699999988875311100000011 12233432 46667666411 245679999988555555544
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-06 Score=89.80 Aligned_cols=200 Identities=9% Similarity=-0.024 Sum_probs=119.5
Q ss_pred EeeceeecCCC-CEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc---cCCCceeccccCC-CCCeEEEEeccCC
Q 004735 192 SYADGIFDPRF-NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV---SGSDFYAFPRMDP-RGERMAWIEWHHP 266 (732)
Q Consensus 192 ~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt---~~~~~~~~p~~SP-DG~~la~~~~~~~ 266 (732)
.....+|+|+| +.|+.... . ..|.++|+.+++ ..... .....+....||| |++.|+..+
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~-d--------g~i~iwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---- 138 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSK-G--------GDIILWDYDVQN---KTSFIQGMGPGDAITGMKFNQFNTNQLFVSS---- 138 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEB-T--------SCEEEEETTSTT---CEEEECCCSTTCBEEEEEEETTEEEEEEEEE----
T ss_pred CEEEEEECCCCCCEEEEEcC-C--------CeEEEEeCCCcc---cceeeecCCcCCceeEEEeCCCCCCEEEEEe----
Confidence 45667899999 76555443 2 478888998876 44433 2445667789999 667776554
Q ss_pred CCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccc
Q 004735 267 NMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE 346 (732)
Q Consensus 267 ~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~ 346 (732)
....|.++|+. ++.. ..+.... .....+..+.|+|||++++.... .+ .|..+|+.+.....+......
T Consensus 139 ----~d~~i~iwd~~-~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~h~~~ 206 (383)
T 3ei3_B 139 ----IRGATTLRDFS-GSVI---QVFAKTD-SWDYWYCCVDVSVSRQMLATGDS-TG--RLLLLGLDGHEIFKEKLHKAK 206 (383)
T ss_dssp ----TTTEEEEEETT-SCEE---EEEECCC-CSSCCEEEEEEETTTTEEEEEET-TS--EEEEEETTSCEEEEEECSSSC
T ss_pred ----CCCEEEEEECC-CCce---EEEeccC-CCCCCeEEEEECCCCCEEEEECC-CC--CEEEEECCCCEEEEeccCCCc
Confidence 23458999987 4433 2222221 00145678899999995555544 34 466667755555555433333
Q ss_pred cCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC----CceEEeccCCCceEEe-eEe-CCEEEEEEeCC
Q 004735 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG----HSLSLLDIPFTDIDNI-TLG-NDCLFVEGASG 420 (732)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~----~~~~~lt~~~~~v~~~-~~~-~~~~~~~~~~~ 420 (732)
+....|++ +++.++++...++.-.|| ++.+ +...........+..+ ..+ ++.+++.++..
T Consensus 207 v~~~~~~~------------~~~~~l~s~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d 272 (383)
T 3ei3_B 207 VTHAEFNP------------RCDWLMATSSVDATVKLW--DLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR 272 (383)
T ss_dssp EEEEEECS------------SCTTEEEEEETTSEEEEE--EGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS
T ss_pred EEEEEECC------------CCCCEEEEEeCCCEEEEE--eCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC
Confidence 33334443 555466677777766666 5544 3333322445567776 344 55666655543
Q ss_pred CCCcEEEEEEcCCCcc
Q 004735 421 VEPSSVAKVTLDDHKL 436 (732)
Q Consensus 421 ~~~~~ly~~dl~~~~~ 436 (732)
..|.++|+.+++.
T Consensus 273 ---~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 273 ---NEIRVYSSYDWSK 285 (383)
T ss_dssp ---SEEEEEETTBTTS
T ss_pred ---CcEEEEECCCCcc
Confidence 4788999887653
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-05 Score=84.73 Aligned_cols=247 Identities=9% Similarity=0.023 Sum_probs=139.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC---CEEEEEeCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKD 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~---~~i~f~~~~~ 164 (732)
..+..++|+| ++.++... .++...+|.....++ .....+. .+...+.+..++. +.++++...+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~~-~~~~~~~--------~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETH-KLIDTLT--------GHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp CCEEEEEECSSSSEEEEEE----TTSCEEEEEEETTEE-EEEEEEC--------CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ccEEEEEEcCCCCEEEEEE----CCCcEEEEecCCCcc-eeeeEec--------CCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 4567899999 66555432 357777777643311 1111111 0112233445541 3556666678
Q ss_pred CeEEEEeCCCCCCC---ceecCCCCCCCCeEeeceeecCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc
Q 004735 165 QRLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (732)
Q Consensus 165 ~~l~~~d~~~~~~~---~~~lt~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 239 (732)
+.|.++|+.+ +. ...+... ........|+|+ |+.++....+ ..|.++|+.++.......+
T Consensus 79 g~v~iwd~~~--~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 79 GKVLIWKEEN--GRWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVASSD---------GKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp SCEEEEEEET--TEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SEEEEEECCTTSCCCEEEE
T ss_pred CEEEEEEcCC--CceeEeeeecCC----CcceEEEEeCCCCCCCEEEEecCC---------CcEEEEecCCCCceeeEEe
Confidence 8899999986 53 2233322 344577889999 8886666542 5788889887631112333
Q ss_pred ccCCCceeccccCC-------------CCCeEEEEeccCCCCCCCccEEEEEEecCCCce--eeeEEecCCCCCccccCc
Q 004735 240 VSGSDFYAFPRMDP-------------RGERMAWIEWHHPNMPWDKAELWVGYISENGDV--YKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 240 t~~~~~~~~p~~SP-------------DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~--~~~~~~~~~~~~~~~~~~ 304 (732)
...........|+| |++.|+.... ...|+++|+. +++. .....+.+.. ..+.
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------dg~i~i~d~~-~~~~~~~~~~~~~~h~----~~v~ 210 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--------DNLVKIWKYN-SDAQTYVLESTLEGHS----DWVR 210 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEET--------TSCEEEEEEE-TTTTEEEEEEEECCCS----SCEE
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC--------CCeEEEEEec-CCCcceeeEEEEeccc----CcEe
Confidence 34455667789999 7898877662 2348889987 4432 1233444443 5677
Q ss_pred CceeCCC---CcEEEEEeccCCeeeEEEEeccCCe---EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC
Q 004735 305 EPKWSSK---GELFFVTDRKNGFWNLHKWIESNNE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (732)
Q Consensus 305 ~~~wspD---g~l~~~~~~~~g~~~l~~~d~~~g~---~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~ 378 (732)
.+.|+|| |+++++... .|. |.++|+.+++ ...+.... ....+. ..+.|.+ +++.|+ +...+
T Consensus 211 ~~~~sp~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~-~~~~~v-----~~~~~s~---~g~~l~-~~~~d 277 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASVSQ-DRT--CIIWTQDNEQGPWKKTLLKEE-KFPDVL-----WRASWSL---SGNVLA-LSGGD 277 (379)
T ss_dssp EEEECCCCSSSEEEEEEET-TSC--EEEEEESSTTSCCEEEESSSS-CCSSCE-----EEEEECS---SSCCEE-EEESS
T ss_pred EEEECCCCCCCCeEEEEeC-CCE--EEEEeCCCCCccceeeeeccc-cCCCcE-----EEEEEcC---CCCEEE-EecCC
Confidence 8999999 675555554 455 4445555542 22222111 111111 1233432 555555 44457
Q ss_pred CEEEEEEEECC
Q 004735 379 GRSYLGILDDF 389 (732)
Q Consensus 379 g~~~ly~~~~~ 389 (732)
|.-+||.++..
T Consensus 278 g~i~iw~~~~~ 288 (379)
T 3jrp_A 278 NKVTLWKENLE 288 (379)
T ss_dssp SSEEEEEEEET
T ss_pred CcEEEEeCCCC
Confidence 88888877643
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.55 E-value=9.5e-06 Score=84.57 Aligned_cols=103 Identities=11% Similarity=-0.019 Sum_probs=70.8
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
.++++...++.|.++|+.+ ++. ..+... ........|+| +++.|+....+ ..|.++|+.+++
T Consensus 86 ~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~----~~~i~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~- 149 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPIT--MQCIKHYVGH----GNAINELKFHPRDPNLLLSVSKD---------HALRLWNIQTDT- 149 (366)
T ss_dssp EEEEEEETTCEEEEECTTT--CCEEEEEESC----CSCEEEEEECSSCTTEEEEEETT---------SCEEEEETTTTE-
T ss_pred CEEEEecCCCEEEEEEchh--ceEeeeecCC----CCcEEEEEECCCCCCEEEEEeCC---------CeEEEEEeecCe-
Confidence 5666777788999999987 443 334322 34567788999 88876655442 478889998876
Q ss_pred cccEEc----ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc
Q 004735 234 QEPKVL----VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD 285 (732)
Q Consensus 234 ~~~~~l----t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~ 285 (732)
.... ...........|+|||+.|+.... ...|.++|+. +++
T Consensus 150 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~i~d~~-~~~ 194 (366)
T 3k26_A 150 --LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM--------DHSLKLWRIN-SKR 194 (366)
T ss_dssp --EEEEECSTTSCSSCEEEEEECTTSSEEEEEET--------TSCEEEEESC-SHH
T ss_pred --EEEEecccccccCceeEEEECCCCCEEEEecC--------CCCEEEEECC-CCc
Confidence 4333 234456677899999998877662 2348888987 553
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-05 Score=85.32 Aligned_cols=232 Identities=10% Similarity=0.029 Sum_probs=137.2
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-c
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~ 234 (732)
.++|.+ ...|.++++++ .....+... ......+.|+++++.|+++... ...|+++++++... .
T Consensus 85 ~ll~~~--~~~I~~i~l~~--~~~~~~~~~----~~~~~~l~~d~~~~~lywsD~~--------~~~I~~~~~~g~~~~~ 148 (400)
T 3p5b_L 85 YLFFTN--RHEVRKMTLDR--SEYTSLIPN----LRNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVS 148 (400)
T ss_dssp EEEEEE--TTEEEEECTTS--CSCEEEECS----CSCEEEEEEETTTTEEEEEETT--------TTEEEEEEC------C
T ss_pred eeEEec--cceeEEEccCC--cceeEeccc----cCcceEEeeeeccCceEEEecC--------CCeEEEEEcccCCCCC
Confidence 466775 35799999987 555555443 2233567899988887666432 26899999986210 0
Q ss_pred ccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 235 EPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 235 ~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
....+. .+.....+.++.+.++.|+|+... ...|.+++++ ++.. ..++.... ..+..++..|.+.
T Consensus 149 ~~~~~~~~~~~~p~glavD~~~~~lY~~d~~-------~~~I~~~~~~-g~~~--~~l~~~~~----~~P~~iavdp~~g 214 (400)
T 3p5b_L 149 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTK-GVKR--KTLFRENG----SKPRAIVVDPVHG 214 (400)
T ss_dssp CCEEEECSSCSCEEEEEEETTTTEEEEEETT-------TTEEEEECTT-TCSE--EEEEECSS----CCEEEEEEETTTT
T ss_pred cceEEEeCCCCCcccEEEEecCCceEEEECC-------CCeEEEEeCC-CCce--EEEEeCCC----CCcceEEEecccC
Confidence 033333 344444567788878889887632 3468999887 3332 22333222 3455678888666
Q ss_pred -EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 314 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 314 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
||| ++. .....|+++++++...+.+.... ..|. +.+.+.+ +++.|||+.. +...|++++++++.
T Consensus 215 ~ly~-td~-~~~~~I~~~~~dG~~~~~~~~~~-----l~~P---~glavd~---~~~~lY~aD~--~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 215 FMYW-TDW-GTPAKIKKGGLNGVDIYSLVTEN-----IQWP---NGITLDL---LSGRLYWVDS--KLHSISSIDVNGGN 279 (400)
T ss_dssp EEEE-EEC-SSSCCEEEEETTSCSCEEEECSS-----CSCE---EEEEEET---TTTEEEEEET--TTTEEEEEETTSCC
T ss_pred eEEE-EeC-CCCCEEEEEeCCCCccEEEEECC-----CCce---EEEEEEe---CCCEEEEEEC--CCCEEEEEeCCCCc
Confidence 665 444 23357999999887666654321 1222 1233432 5788988753 44579999999887
Q ss_pred eEEeccC---CCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 393 LSLLDIP---FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 393 ~~~lt~~---~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
.+.+... ......+...++.+++.-. ....|+++|..+|+
T Consensus 280 ~~~~~~~~~~l~~P~gl~v~~~~lywtd~---~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 280 RKTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS 322 (400)
T ss_dssp CEEEEECSSTTSSEEEEEEETTEEEEEES---SSCSEEEEESSSCC
T ss_pred cEEEEeCCCCCCCCEEEEEeCCEEEEecC---CCCeEEEEEcCCCC
Confidence 7666442 2233445456666665553 23458888865554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-05 Score=83.07 Aligned_cols=232 Identities=13% Similarity=0.080 Sum_probs=137.5
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCC--ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSS--PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~--~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
.|+|+. ...|.++++++ .. ...+... ........|+++++.|+++-.. ...|++++++++..
T Consensus 6 ~ll~~~--~~~I~~i~l~~--~~~~~~~~~~~----~~~~~~ld~d~~~~~lyw~D~~--------~~~I~r~~~~g~~~ 69 (318)
T 3sov_A 6 LLLYAN--RRDLRLVDATN--GKENATIVVGG----LEDAAAVDFVFSHGLIYWSDVS--------EEAIKRTEFNKTES 69 (318)
T ss_dssp EEEEEC--EEEEEEEETTC--TTSCCEEEEEE----EEEEEEEEEEGGGTEEEEEETT--------TTEEEEEETTSSSC
T ss_pred EEEEEc--cCeEEEEECCC--CceEEEEEecC----CCccEEEEEEeCCCEEEEEECC--------CCcEEEEEccCCCc
Confidence 466774 45799999986 32 2222221 1223456799988886666332 26899999987641
Q ss_pred cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
....+..+.....+.++.+.+..|+|.... ...|.+++++ |... ..++.... ..+..++..|++.
T Consensus 70 -~~~~~~~~l~~p~glavd~~~g~ly~~d~~-------~~~I~~~~~d--G~~~-~~l~~~~~----~~P~giavdp~~g 134 (318)
T 3sov_A 70 -VQNVVVSGLLSPDGLACDWLGEKLYWTDSE-------TNRIEVSNLD--GSLR-KVLFWQEL----DQPRAIALDPSSG 134 (318)
T ss_dssp -CCEEEEECCSCCCEEEEETTTTEEEEEETT-------TTEEEEEETT--SCSC-EEEECSSC----SSEEEEEEEGGGT
T ss_pred -eEEEEcCCCCCccEEEEEcCCCeEEEEECC-------CCEEEEEECC--CCcE-EEEEeCCC----CCccEEEEeCCCC
Confidence 012333333344567788888889887632 3569999986 3321 22232222 3456677888655
Q ss_pred -EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 314 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 314 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
||+ ++. .....|+++++++...+.+.... ..|. +.+.+.+ +++.|||+.. +...|++++++++.
T Consensus 135 ~ly~-td~-~~~~~I~r~~~dG~~~~~~~~~~-----l~~P---nglavd~---~~~~lY~aD~--~~~~I~~~d~dG~~ 199 (318)
T 3sov_A 135 FMYW-TDW-GEVPKIERAGMDGSSRFIIINSE-----IYWP---NGLTLDY---EEQKLYWADA--KLNFIHKSNLDGTN 199 (318)
T ss_dssp EEEE-EEC-SSSCEEEEEETTSCSCEEEECSS-----CSCE---EEEEEET---TTTEEEEEET--TTTEEEEEETTSCS
T ss_pred EEEE-Eec-CCCCEEEEEEcCCCCeEEEEECC-----CCCc---cEEEEec---cCCEEEEEEC--CCCEEEEEcCCCCc
Confidence 655 454 23567999999876655554321 1121 2334432 6788998853 44579999998877
Q ss_pred eEEecc-CCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 393 LSLLDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 393 ~~~lt~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+.+.. .......+..+++.+++.-. ....|++++..+|+.
T Consensus 200 ~~~~~~~~~~~P~glav~~~~lywtd~---~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 200 RQAVVKGSLPHPFALTLFEDILYWTDW---STHSILACNKYTGEG 241 (318)
T ss_dssp CEEEECSCCSCEEEEEEETTEEEEEET---TTTEEEEEETTTCCS
T ss_pred eEEEecCCCCCceEEEEeCCEEEEEec---CCCeEEEEECCCCCc
Confidence 665544 23334455445666665532 345789999866653
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=100.24 Aligned_cols=113 Identities=15% Similarity=0.070 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCC---EEEEEcCCCCCCC----------Chh--hHH-------------
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW---AFVDVNYGGSTGY----------GRE--FRE------------- 544 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~---~v~~~d~rG~~g~----------g~~--~~~------------- 544 (732)
...|.||++||.+. ....|..++..|+++|| .|+++|++|.+.. |.. ...
T Consensus 20 ~~~ppVVLlHG~g~--s~~~w~~la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~l~~ 97 (484)
T 2zyr_A 20 EDFRPVVFVHGLAG--SAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDK 97 (484)
T ss_dssp -CCCCEEEECCTTC--CGGGGHHHHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHHHHH
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHHHHHcCCCcceEEEEECCCCCccccccccccccccccccccccccccccccccc
Confidence 34577999999843 34567788999999999 6999999964311 000 000
Q ss_pred hhcc---CCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEeecCcCC
Q 004735 545 RLLG---RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVAD 609 (732)
Q Consensus 545 ~~~~---~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p---~~~~a~v~~~~~~d 609 (732)
.... .......+++.+.++.++++.. .+++.++||||||.+++.++. +| ++++++|++++...
T Consensus 98 v~~~~~~~~~~~~~~dla~~L~~ll~~lg--~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 98 ILSKSRERLIDETFSRLDRVIDEALAESG--ADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHC--CSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred cccccccCchhhhHHHHHHHHHHHHHHhC--CCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 0000 0001235677777887777633 368999999999999999988 76 48999999998764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.2e-06 Score=87.46 Aligned_cols=157 Identities=10% Similarity=0.063 Sum_probs=94.9
Q ss_pred CceeEEEC--CEEEEEeCCCCeEEEEeCCCCCCCceecCC----------CCCCCCeEeeceeecC-CCCEEEEEEeccC
Q 004735 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSSPLPITP----------DYGEPLVSYADGIFDP-RFNRYVTVREDRR 213 (732)
Q Consensus 147 ~~~~~~~~--~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~----------~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~ 213 (732)
+.+..+++ +..+++...++.|.++++.+ +....... .............|+| +++.++.... .
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d- 121 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLEN--SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF-D- 121 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCC--CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET-T-
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCC--CcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC-C-
Confidence 34455554 35555666788899999986 33222110 0000134456778999 6665444433 2
Q ss_pred CCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCC---CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeE
Q 004735 214 QDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP---RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 290 (732)
Q Consensus 214 ~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SP---DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~ 290 (732)
..|.++|+.+++ ...............|+| +++.|+... . ...|+++|+. +++. ..
T Consensus 122 -------~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~v~~~d~~-~~~~--~~ 180 (408)
T 4a11_B 122 -------KTLKVWDTNTLQ---TADVFNFEETVYSHHMSPVSTKHCLVAVGT-R-------GPKVQLCDLK-SGSC--SH 180 (408)
T ss_dssp -------SEEEEEETTTTE---EEEEEECSSCEEEEEECSSCSSCCEEEEEE-S-------SSSEEEEESS-SSCC--CE
T ss_pred -------CeEEEeeCCCCc---cceeccCCCceeeeEeecCCCCCcEEEEEc-C-------CCeEEEEeCC-Ccce--ee
Confidence 588999999877 544444444445566666 555676554 2 2348999998 6654 44
Q ss_pred EecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 291 CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 291 ~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
.+.... ..+..+.|+||++ ++++... .|. |..+|+.++
T Consensus 181 ~~~~~~----~~v~~~~~~~~~~~ll~~~~~-dg~--i~i~d~~~~ 219 (408)
T 4a11_B 181 ILQGHR----QEILAVSWSPRYDYILATASA-DSR--VKLWDVRRA 219 (408)
T ss_dssp EECCCC----SCEEEEEECSSCTTEEEEEET-TSC--EEEEETTCS
T ss_pred eecCCC----CcEEEEEECCCCCcEEEEEcC-CCc--EEEEECCCC
Confidence 455554 5677899999999 7777665 555 445565543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-05 Score=99.33 Aligned_cols=245 Identities=13% Similarity=0.037 Sum_probs=139.9
Q ss_pred ceeEEECC-EEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 148 ~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.+..++++ ..+++...++.|.++|+.+ ++ ...+... .......+|||||++|+....+ ..|.+
T Consensus 619 ~~~~~s~~~~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~d---------~~v~v 683 (1249)
T 3sfz_A 619 YHACFSQDGQRIASCGADKTLQVFKAET--GEKLLDIKAH----EDEVLCCAFSSDDSYIATCSAD---------KKVKI 683 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SEEEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCC--CCEEEEeccC----CCCEEEEEEecCCCEEEEEeCC---------CeEEE
Confidence 34445433 4455555778899999987 44 3444433 3455678899999987665442 57999
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
+|+.+++. ...+......+....|+||+...++++... ...|.++|+. +++. ...+.+.. ..+..
T Consensus 684 wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~------d~~v~vwd~~-~~~~--~~~~~~h~----~~v~~ 748 (1249)
T 3sfz_A 684 WDSATGKL--VHTYDEHSEQVNCCHFTNKSNHLLLATGSN------DFFLKLWDLN-QKEC--RNTMFGHT----NSVNH 748 (1249)
T ss_dssp EETTTCCE--EEEEECCSSCEEEEEECSSSSCCEEEEEET------TSCEEEEETT-SSSE--EEEECCCS----SCEEE
T ss_pred EECCCCce--EEEEcCCCCcEEEEEEecCCCceEEEEEeC------CCeEEEEECC-Ccch--hheecCCC----CCEEE
Confidence 99998871 333444455667789999765443333222 2348999998 6765 44455554 56778
Q ss_pred ceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccccc-C--C--CceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF-S--R--PLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 306 ~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~-~--~--~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
+.|+|||+++++... .|. |..+|+.+++........... . . .........+.|.+ +++.++..+ ++
T Consensus 749 ~~~sp~~~~l~s~s~-dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---dg~~l~~~~--~~- 819 (1249)
T 3sfz_A 749 CRFSPDDELLASCSA-DGT--LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA---DGDKIIVAA--KN- 819 (1249)
T ss_dssp EEECSSTTEEEEEES-SSE--EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT---TSSEEEEEE--TT-
T ss_pred EEEecCCCEEEEEEC-CCe--EEEEeCCCCcccceecccccccccCCccccccceEEEEEECC---CCCEEEEEc--CC-
Confidence 899999994444444 344 556677666543322110000 0 0 00000112234443 677666654 34
Q ss_pred EEEEEEECCCCceE-Eec-cCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 381 SYLGILDDFGHSLS-LLD-IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 381 ~~ly~~~~~~~~~~-~lt-~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
.+++++..++... .+. .....+..+ ..+++.+++.++.. ..+.++|+.++.
T Consensus 820 -~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~v~vwd~~~~~ 873 (1249)
T 3sfz_A 820 -KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ---YCVELWNIDSRL 873 (1249)
T ss_dssp -EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS---SCEEEEETTTTE
T ss_pred -cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCc
Confidence 4666677776643 332 234445555 34455555555432 357777877764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.49 E-value=3.9e-06 Score=89.25 Aligned_cols=206 Identities=10% Similarity=0.067 Sum_probs=122.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCC---CCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGD---EPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~ 164 (732)
..+.++.|++ ++.|||++... + .|++.+..++. ....+.... +....+.++.+.++.|+|.+...
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~---~--~I~~~~~~g~~~~~~~~~~~~~~------~~~p~glavD~~~~~lY~~d~~~ 180 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQ---R--MICSTQLDRAHGVSSYDTVISRD------IQAPDGLAVDWIHSNIYWTDSVL 180 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTT---T--EEEEEEC------CCCEEEECSS------CSCEEEEEEETTTTEEEEEETTT
T ss_pred CcceEEeeeeccCceEEEecCC---C--eEEEEEcccCCCCCcceEEEeCC------CCCcccEEEEecCCceEEEECCC
Confidence 4667899999 99999998743 3 46666554210 122222211 11111223333367899998888
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-CC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GS 243 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~~ 243 (732)
+.|+++++++ ...+.+.... .....+.+++|.+.+|+++.... ...|+++++++.. .+.+.. +-
T Consensus 181 ~~I~~~~~~g--~~~~~l~~~~---~~~P~~iavdp~~g~ly~td~~~-------~~~I~~~~~dG~~---~~~~~~~~l 245 (400)
T 3p5b_L 181 GTVSVADTKG--VKRKTLFREN---GSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVD---IYSLVTENI 245 (400)
T ss_dssp TEEEEECTTT--CSEEEEEECS---SCCEEEEEEETTTTEEEEEECSS-------SCCEEEEETTSCS---CEEEECSSC
T ss_pred CeEEEEeCCC--CceEEEEeCC---CCCcceEEEecccCeEEEEeCCC-------CCEEEEEeCCCCc---cEEEEECCC
Confidence 8999999986 5554444321 12236678999888876664321 2579999999876 555543 33
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
..-.+.+++|++++|+|+... ...|+++|++ ++.. ..+......- ..+..++. ++. |||+ +.
T Consensus 246 ~~P~glavd~~~~~lY~aD~~-------~~~I~~~d~d-G~~~--~~~~~~~~~l--~~P~gl~v--~~~~lywt-d~-- 308 (400)
T 3p5b_L 246 QWPNGITLDLLSGRLYWVDSK-------LHSISSIDVN-GGNR--KTILEDEKRL--AHPFSLAV--FEDKVFWT-DI-- 308 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETT-------TTEEEEEETT-SCCC--EEEEECSSTT--SSEEEEEE--ETTEEEEE-ES--
T ss_pred CceEEEEEEeCCCEEEEEECC-------CCEEEEEeCC-CCcc--EEEEeCCCCC--CCCEEEEE--eCCEEEEe-cC--
Confidence 455678999999999888632 3569999987 3332 2222221100 22223333 444 6654 33
Q ss_pred CeeeEEEEeccCCeE
Q 004735 323 GFWNLHKWIESNNEV 337 (732)
Q Consensus 323 g~~~l~~~d~~~g~~ 337 (732)
+...|++++..+|+.
T Consensus 309 ~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 309 INEAIFSANRLTGSD 323 (400)
T ss_dssp SSCSEEEEESSSCCC
T ss_pred CCCeEEEEEcCCCCc
Confidence 445688888656543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-05 Score=81.09 Aligned_cols=226 Identities=12% Similarity=0.031 Sum_probs=124.5
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCC--------ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSS--------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~--------~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+.++++...++.|.++++.. ++ ...+... .......+|+|+|++++....+ ..|.++
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~--~~~~~~~~~~~~~l~~h----~~~V~~~~~~~~~~~l~s~s~D---------~~v~lw 103 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYE--EEQNGYFGIPHKALTGH----NHFVSDLALSQENCFAISSSWD---------KTLRLW 103 (343)
T ss_dssp CCEEEEEETTSCEEEEEECS--SCCSSBSEEEEEEECCC----SSCEEEEEECSSTTEEEEEETT---------SEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCc--CCcccccccccchhccC----CCceEEEEECCCCCEEEEEcCC---------CcEEEE
Confidence 35666766788888888864 22 1123322 3345677899999986554432 578888
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEec---CCCCCccccC
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA---GFDPTIVESP 303 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~---~~~~~~~~~~ 303 (732)
|+.+++. ...+......+....|||||++|+-.+. ...|.++|+. +... .... +.. ..+
T Consensus 104 d~~~~~~--~~~~~~h~~~v~~v~~sp~~~~l~s~~~--------d~~i~~wd~~-~~~~---~~~~~~~~~~----~~v 165 (343)
T 2xzm_R 104 DLRTGTT--YKRFVGHQSEVYSVAFSPDNRQILSAGA--------EREIKLWNIL-GECK---FSSAEKENHS----DWV 165 (343)
T ss_dssp ETTSSCE--EEEEECCCSCEEEEEECSSTTEEEEEET--------TSCEEEEESS-SCEE---EECCTTTSCS----SCE
T ss_pred ECCCCcE--EEEEcCCCCcEEEEEECCCCCEEEEEcC--------CCEEEEEecc-CCce---eeeecccCCC----cee
Confidence 9988761 3344444556677899999999876652 2338888886 3222 1111 121 345
Q ss_pred cCceeCCCC----------cEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEE
Q 004735 304 TEPKWSSKG----------ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC 373 (732)
Q Consensus 304 ~~~~wspDg----------~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~ 373 (732)
..+.|+|++ .+++.... .+. |.++|........+......+.. +.|.+ +++. ++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~h~~~v~~---------~~~s~---~g~~-l~ 229 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGW-DGR--LKVWNTNFQIRYTFKAHESNVNH---------LSISP---NGKY-IA 229 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEET-TSE--EEEEETTTEEEEEEECCSSCEEE---------EEECT---TSSE-EE
T ss_pred eeeeeccccccccccCCCCCEEEEEcC-CCE--EEEEcCCCceeEEEcCccccceE---------EEECC---CCCE-EE
Confidence 667888886 44444444 454 44556433322233222222222 33432 5554 45
Q ss_pred EEEECCEEEEEEEECC-CCc-eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 374 SYRQNGRSYLGILDDF-GHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 374 ~s~~~g~~~ly~~~~~-~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+...++.-.|| ++. .+. ...+. ....+..+ ..+++.++..+. . ..+.++++.+++.
T Consensus 230 sgs~dg~v~iw--d~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~-d---~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 230 TGGKDKKLLIW--DILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGT-D---QGVKIFNLMTQSK 288 (343)
T ss_dssp EEETTCEEEEE--ESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEE-S---SCEEEEESSSCCS
T ss_pred EEcCCCeEEEE--ECCCCcccceeec-CCCcEEEEEECCCCCEEEEEC-C---CCEEEEEeCCCCC
Confidence 55567766666 542 222 22232 23346666 344555554332 2 2477788777653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00015 Score=73.51 Aligned_cols=253 Identities=8% Similarity=-0.001 Sum_probs=135.3
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC---CEEEEEeCCCC
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKDQ 165 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~---~~i~f~~~~~~ 165 (732)
.+..++|+| |+.++-- . .++...+|.....++.....+.. |...+.+..++. +.++++...++
T Consensus 11 ~V~~~~~s~~g~~las~-s---~D~~v~iw~~~~~~~~~~~~l~g---------H~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATC-S---SDKTIKIFEVEGETHKLIDTLTG---------HEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp CEEEEEECTTSSEEEEE-E---TTSCEEEEEBCSSCBCCCEEECC---------CSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred ceEEEEECCCCCEEEEE-e---CCCEEEEEecCCCCcEEEEEEcc---------ccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 456789999 6655443 2 35777777764321101111111 111233344432 45666777788
Q ss_pred eEEEEeCCCCCCCcee---cCCCCCCCCeEeeceeecCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc
Q 004735 166 RLYKHSIDSKDSSPLP---ITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~---lt~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt 240 (732)
.|.++|+.+ +.... +... .......+|+|+ |+.|+....+ ..|.++|+.++.......+.
T Consensus 78 ~v~iWd~~~--~~~~~~~~~~~h----~~~v~~v~~~p~~~g~~l~s~s~d---------~~v~~wd~~~~~~~~~~~~~ 142 (297)
T 2pm7_B 78 KVMIWKEEN--GRWSQIAVHAVH----SASVNSVQWAPHEYGPMLLVASSD---------GKVSVVEFKENGTTSPIIID 142 (297)
T ss_dssp EEEEEEBSS--SCBCCCEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------SEEEEEEBCSSSCBCCEEEE
T ss_pred EEEEEEcCC--CceEEEEEeecC----CCceeEEEeCcCCCCcEEEEEECC---------CcEEEEEecCCCceeeeeee
Confidence 999999986 43222 2222 234567889998 8876555442 47788888765310022333
Q ss_pred cCCCceeccccCCC-------------CCeEEEEeccCCCCCCCccEEEEEEecCCCc--eeeeEEecCCCCCccccCcC
Q 004735 241 SGSDFYAFPRMDPR-------------GERMAWIEWHHPNMPWDKAELWVGYISENGD--VYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 241 ~~~~~~~~p~~SPD-------------G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~--~~~~~~~~~~~~~~~~~~~~ 305 (732)
.....+....|+|+ ++.|+-.+. ...|.++|+. +++ ......+.+.. ..+..
T Consensus 143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~--------D~~v~lwd~~-~~~~~~~~~~~l~~H~----~~V~~ 209 (297)
T 2pm7_B 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--------DNLVKIWKYN-SDAQTYVLESTLEGHS----DWVRD 209 (297)
T ss_dssp CCSSCEEEEEECCCC------------CCEEEEEET--------TSCEEEEEEE-TTTTEEEEEEEECCCS----SCEEE
T ss_pred cccCccceEeecCCcccccccCCCCCCcceEEEEcC--------CCcEEEEEEc-CCCceEEEEEEecCCC----CceEE
Confidence 33445566789997 466665542 2237888887 554 11233455554 56788
Q ss_pred ceeCCCC---cEEEEEeccCCeeeEEEEeccCCeE-EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 306 PKWSSKG---ELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 306 ~~wspDg---~l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
++|+||+ +++.+... .+.-.||-++...+.. ..+.... ......| .+.|.+ +++.| .+...++.-
T Consensus 210 v~~sp~~~~~~~las~s~-D~~v~iWd~~~~~~~~~~~~~~~~-~~~~~v~-----~~~~s~---~g~~l-as~~~D~~v 278 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQ-DRTCIIWTQDNEQGPWKKTLLKEE-KFPDVLW-----RASWSL---SGNVL-ALSGGDNKV 278 (297)
T ss_dssp EEECCCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSS-CCSSCEE-----EEEECS---SSCCE-EEEETTSCE
T ss_pred EEECCCCCCceEEEEEEC-CCcEEEEEeCCCCCccceeeeecc-cCCCcEE-----EEEECC---CCCEE-EEEcCCCcE
Confidence 9999996 45545444 4555565443222221 2222111 1112222 234443 55544 455568888
Q ss_pred EEEEEECCCCceEE
Q 004735 382 YLGILDDFGHSLSL 395 (732)
Q Consensus 382 ~ly~~~~~~~~~~~ 395 (732)
+||..+.. |.+..
T Consensus 279 ~lw~~~~~-g~w~~ 291 (297)
T 2pm7_B 279 TLWKENLE-GKWEP 291 (297)
T ss_dssp EEEEECTT-SCEEE
T ss_pred EEEEECCC-CcEEe
Confidence 89887654 34443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.45 E-value=4e-05 Score=81.76 Aligned_cols=211 Identities=11% Similarity=0.045 Sum_probs=115.2
Q ss_pred eEEE-CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 150 FRIF-GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 150 ~~~~-~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
++++ ++.|+++....+.|+++|+++ +..+.+.... .... ++|+|+|+.|++..... ...|++++.
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~--g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d~~~-------~~~I~~~d~ 201 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDD--NKVTTVHPGF----KGGK-PAVTKDKQRVYSIGWEG-------THTVYVYMK 201 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTT--TEEEEEEETC----CBCB-CEECTTSSEEEEEBSST-------TCEEEEEEG
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCC--CEEEEeeccC----CCCc-eeEecCCCcEEEEecCC-------CceEEEEEc
Confidence 3444 347888877778999999987 6655554331 1113 88999999865553322 138999999
Q ss_pred CCCCccccEEc----ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE--ecCCCCCcccc
Q 004735 229 NGQNIQEPKVL----VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC--VAGFDPTIVES 302 (732)
Q Consensus 229 ~~~~~~~~~~l----t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~--~~~~~~~~~~~ 302 (732)
+++.. .+.+ ..........+++|++.+|++.. . ...|+++|.+ ++....... ..+.. . ..
T Consensus 202 ~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d--~------~~~I~~~d~~-~~~~~~~~~~~~~g~~-~--~~ 267 (409)
T 3hrp_A 202 ASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFVD--S------NKNFGRFNVK-TQEVTLIKQLELSGSL-G--TN 267 (409)
T ss_dssp GGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEEC--T------TCEEEEEETT-TCCEEEEEECCCCSCC-C--CS
T ss_pred CCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEEE--C------CCcEEEEECC-CCCEEEEecccccCCC-C--CC
Confidence 87651 2333 21223345678999767787732 2 3469999987 565321111 11111 0 11
Q ss_pred Cc-CceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccc--cccCC-C---ceeecccceeeeeecCCCCEEEEE
Q 004735 303 PT-EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSR-P---LWVFGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 303 ~~-~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~--~~~~~-~---~w~~~~~~~~~~~~~~~~~~l~~~ 374 (732)
+. .++|+|++. ||+ ++. +...|++++.++. ...+.... ..... + .-......+.+.+ ++ .||++
T Consensus 268 P~~~ia~~p~~g~lyv-~d~--~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~---dG-~lyva 339 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYM-SDQ--NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE---DG-NFYIV 339 (409)
T ss_dssp SCCEEEEETTTTEEEE-EET--TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT---TC-CEEEE
T ss_pred ccccEEEeCCCCEEEE-EeC--CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC---CC-CEEEE
Confidence 23 788999655 654 444 4457999988765 33333111 00000 0 0000122344542 44 46555
Q ss_pred EEECCEEEEEEEECCCCceEEec
Q 004735 375 YRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 375 s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
+..+...|.++++.++.+..+.
T Consensus 340 -d~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 340 -DGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp -ETTTTCEEEEEETTTTEEEEEE
T ss_pred -eCCCCCEEEEEECCCCEEEEEe
Confidence 3214456888886667665553
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.5e-05 Score=77.68 Aligned_cols=241 Identities=8% Similarity=-0.035 Sum_probs=129.7
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l 167 (732)
.+..+.|+| ++.++ .-. .++...+|....+ ...+.+.. +.....+..++++ .++++...++.|
T Consensus 67 ~v~~~~~s~dg~~l~-s~s---~D~~v~~wd~~~~--~~~~~~~~---------h~~~v~~~~~~~~~~~l~s~s~D~~i 131 (319)
T 3frx_A 67 IVQDCTLTADGAYAL-SAS---WDKTLRLWDVATG--ETYQRFVG---------HKSDVMSVDIDKKASMIISGSRDKTI 131 (319)
T ss_dssp CEEEEEECTTSSEEE-EEE---TTSEEEEEETTTT--EEEEEEEC---------CSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred cEEEEEECCCCCEEE-EEe---CCCEEEEEECCCC--CeeEEEcc---------CCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 456788998 55443 333 2466666654322 11111111 1122334444433 556666678889
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCC------CCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPR------FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spd------G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
.++|+.+ .....+... ........|+|. +..++.... . ..|.++|+.+++. ...+..
T Consensus 132 ~vwd~~~--~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~l~s~~~-d--------~~i~~wd~~~~~~--~~~~~~ 194 (319)
T 3frx_A 132 KVWTIKG--QCLATLLGH----NDWVSQVRVVPNEKADDDSVTIISAGN-D--------KMVKAWNLNQFQI--EADFIG 194 (319)
T ss_dssp EEEETTS--CEEEEECCC----SSCEEEEEECCC------CCEEEEEET-T--------SCEEEEETTTTEE--EEEECC
T ss_pred EEEECCC--CeEEEEecc----CCcEEEEEEccCCCCCCCccEEEEEeC-C--------CEEEEEECCcchh--heeecC
Confidence 9999975 444444433 233455667774 445444333 2 4678889887651 223334
Q ss_pred CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 242 ~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
....+....|||||+.|+-.+ ....|.++|+. +++. +..+... ..+..++|+|||.++.....
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~--------~dg~i~iwd~~-~~~~--~~~~~~~-----~~v~~~~~sp~~~~la~~~~- 257 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAG--------KDGEIMLWNLA-AKKA--MYTLSAQ-----DEVFSLAFSPNRYWLAAATA- 257 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEE--------TTCEEEEEETT-TTEE--EEEEECC-----SCEEEEEECSSSSEEEEEET-
T ss_pred CCCcEEEEEEcCCCCEEEEEe--------CCCeEEEEECC-CCcE--EEEecCC-----CcEEEEEEcCCCCEEEEEcC-
Confidence 445567789999999888665 23459999998 6654 3444443 34678899999984444443
Q ss_pred CCeeeEEEEeccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 322 NGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
+. +.+++.+++... .+....... ...-......+.|.+ +++.| ++...++.-+||.+.
T Consensus 258 -~~--i~v~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp---dg~~l-~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 258 -TG--IKVFSLDPQYLVDDLRPEFAGY-SKAAEPHAVSLAWSA---DGQTL-FAGYTDNVIRVWQVM 316 (319)
T ss_dssp -TE--EEEEEETTEEEEEEECCCCTTC-CGGGCCCEEEEEECT---TSSEE-EEEETTSCEEEEEEE
T ss_pred -CC--cEEEEeCcCeeeeccCcccccc-ccCcCcceeEEEECC---CCCEE-EEeecCceEEEEEEe
Confidence 23 444455554332 221111000 000001112345553 66555 455667777777654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-05 Score=79.99 Aligned_cols=237 Identities=11% Similarity=0.024 Sum_probs=128.6
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
..+|+.+.++.+. .++.|+++|+.+ ++..+ +.... +.......+|+|+|++++....+ ..|.+++
T Consensus 30 ~l~WS~~~~lAvg-~D~tV~iWd~~t--g~~~~~~~~~~--~~~~V~~v~~~~~~~~l~sgs~D---------g~v~iw~ 95 (318)
T 4ggc_A 30 LVDWSSGNVLAVA-LDNSVYLWSASS--GDILQLLQMEQ--PGEYISSVAWIKEGNYLAVGTSS---------AEVQLWD 95 (318)
T ss_dssp CEEECTTSEEEEE-ETTEEEEEETTT--CCEEEEEECCS--TTCCEEEEEECTTSSEEEEEETT---------SEEEEEE
T ss_pred EEEECCCCEEEEE-eCCEEEEEECCC--CCEEEEEEecC--CCCeEEEEEECCCCCEEEEEECC---------CcEEEee
Confidence 4566655444443 477899999988 66544 33211 13446778899999987655442 3566666
Q ss_pred cCCCCccccEEccc------------------------------------------CCCceeccccCCCCCeEEEEeccC
Q 004735 228 LNGQNIQEPKVLVS------------------------------------------GSDFYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 228 ~~~~~~~~~~~lt~------------------------------------------~~~~~~~p~~SPDG~~la~~~~~~ 265 (732)
+.+++ ...... .........++++|+.|+....
T Consensus 96 ~~~~~---~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-- 170 (318)
T 4ggc_A 96 VQQQK---RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-- 170 (318)
T ss_dssp TTTTE---EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred cCCce---eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec--
Confidence 66554 211110 1112233456777777665442
Q ss_pred CCCCCCccEEEEEEecCCCcee--eeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecc
Q 004735 266 PNMPWDKAELWVGYISENGDVY--KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS 342 (732)
Q Consensus 266 ~~~~~~~~~l~v~d~~~~g~~~--~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~ 342 (732)
...|.++|+. +++.. ......... ..+....|+|++. +++.... .....|..++...+.......
T Consensus 171 ------d~~i~iwd~~-~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 171 ------DNLVNVWPSA-PGEGGWVPLQTFTQHQ----GAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp ------TSCEEEEESS-CBTTBSCCSEEECCCC----SCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETTTCCEEEEEE
T ss_pred ------CcceeEEECC-CCcccccceeeecccC----CceEEEEecCCCCcEEEEEec-CCCCEEEEEeccccccccccc
Confidence 2237778877 55321 122222222 4566778999887 6655443 333456666776665544433
Q ss_pred cccccCCCceeecccceeeeeecCCCCEEEEEEE-ECCEEEEEEEECCCCce-EEeccCCCceEEe-eEeCCEEEEEEeC
Q 004735 343 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~-~~g~~~ly~~~~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~ 419 (732)
.........|.+ +++.++..+. .++. |++++..+++. ..+......|..+ ..+++.+++.++.
T Consensus 239 ~~~~v~~~~~~~------------~~~~~~~~sg~~d~~--i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 239 AHSQVCSILWSP------------HYKELISGHGFAQNQ--LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp CSSCEEEEEEET------------TTTEEEEEECTTTCC--EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ceeeeeeeeecc------------cccceEEEEEcCCCE--EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 222222222332 6666665542 3444 55557777664 4555556678777 4455666655553
Q ss_pred CCCCcEEEEEEcCC
Q 004735 420 GVEPSSVAKVTLDD 433 (732)
Q Consensus 420 ~~~~~~ly~~dl~~ 433 (732)
. ..|.++|+..
T Consensus 305 D---~~v~iWd~~~ 315 (318)
T 4ggc_A 305 D---ETLRLWRCFE 315 (318)
T ss_dssp T---TEEEEECCSC
T ss_pred C---CeEEEEECCC
Confidence 3 2455555543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=7e-06 Score=85.61 Aligned_cols=152 Identities=11% Similarity=0.085 Sum_probs=93.5
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceecCCCC-CCCCeEeeceeecCC----CCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPR----FNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~spd----G~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
+..++....++.|.++++.++ ...+.+.... ..........+|+|+ |+.|+.... . ..|.++|+.
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-d--------g~i~v~d~~ 103 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS-R--------GIIRIINPI 103 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET-T--------CEEEEECTT
T ss_pred CceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC-C--------CEEEEEEch
Confidence 344455545668899998752 3333333210 001234567789999 555544433 2 589999998
Q ss_pred CCCccccEEcccCCCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe---cCCCCCccccCcC
Q 004735 230 GQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV---AGFDPTIVESPTE 305 (732)
Q Consensus 230 ~~~~~~~~~lt~~~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~---~~~~~~~~~~~~~ 305 (732)
+++. ...+......+....|+| |++.|+..+. ...|.++|+. +++. ...+ .... ..+..
T Consensus 104 ~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~s~~~--------dg~i~iwd~~-~~~~--~~~~~~~~~~~----~~v~~ 166 (366)
T 3k26_A 104 TMQC--IKHYVGHGNAINELKFHPRDPNLLLSVSK--------DHALRLWNIQ-TDTL--VAIFGGVEGHR----DEVLS 166 (366)
T ss_dssp TCCE--EEEEESCCSCEEEEEECSSCTTEEEEEET--------TSCEEEEETT-TTEE--EEEECSTTSCS----SCEEE
T ss_pred hceE--eeeecCCCCcEEEEEECCCCCCEEEEEeC--------CCeEEEEEee-cCeE--EEEeccccccc----CceeE
Confidence 8761 333444455677889999 8888876652 2348999998 6654 4444 3333 56788
Q ss_pred ceeCCCCcEEEEEeccCCeeeEEEEeccCCe
Q 004735 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 306 ~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
+.|+|||+.+++... .+. |.++|+.+++
T Consensus 167 ~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~ 194 (366)
T 3k26_A 167 ADYDLLGEKIMSCGM-DHS--LKLWRINSKR 194 (366)
T ss_dssp EEECTTSSEEEEEET-TSC--EEEEESCSHH
T ss_pred EEECCCCCEEEEecC-CCC--EEEEECCCCc
Confidence 999999995445544 343 5666776654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.44 E-value=9.9e-05 Score=74.82 Aligned_cols=234 Identities=7% Similarity=-0.032 Sum_probs=126.4
Q ss_pred EEEEEeCCCCeEEEEeCCCCCC-CceecCCCCCCCCeEeeceeecCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
..+++...++.|.++++.++.. ....+... ........|+|+ |+.|+....+ ..|.++|+.+++
T Consensus 22 ~~las~s~D~~v~iw~~~~~~~~~~~~l~gH----~~~V~~v~~s~~~~g~~l~s~s~D---------~~v~iWd~~~~~ 88 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKVMIWKEENGR 88 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSSCBCCCEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------TEEEEEEBSSSC
T ss_pred CEEEEEeCCCEEEEEecCCCCcEEEEEEccc----cCCeEEEEecCCCcCCEEEEEcCC---------CEEEEEEcCCCc
Confidence 4455656778899999874101 12334433 334567789874 8875544432 478888988764
Q ss_pred ccccEEcccCCCceeccccCCC--CCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPD--G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
......+......+....|+|| |+.|+..+. ...|.++|+. ++.......+.+.. ..+....|+|
T Consensus 89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~--------d~~v~~wd~~-~~~~~~~~~~~~h~----~~v~~~~~~p 155 (297)
T 2pm7_B 89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS--------DGKVSVVEFK-ENGTTSPIIIDAHA----IGVNSASWAP 155 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCGGGCSEEEEEET--------TSEEEEEEBC-SSSCBCCEEEECCS----SCEEEEEECC
T ss_pred eEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC--------CCcEEEEEec-CCCceeeeeeeccc----CccceEeecC
Confidence 1112333334455677899998 888876652 3458888987 44321223344443 5567789999
Q ss_pred C-------------CcEEEEEeccCCeeeEEEEeccCCe--E---EEecccccccCCCceeecccceeeeeecCCC--CE
Q 004735 311 K-------------GELFFVTDRKNGFWNLHKWIESNNE--V---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEK--NL 370 (732)
Q Consensus 311 D-------------g~l~~~~~~~~g~~~l~~~d~~~g~--~---~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~ 370 (732)
+ ++++++... .+.-+|| |..+++ . ..+......+. .+.|.+ ++ +.
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~-D~~v~lw--d~~~~~~~~~~~~~l~~H~~~V~---------~v~~sp---~~~~~~ 220 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGA-DNLVKIW--KYNSDAQTYVLESTLEGHSDWVR---------DVAWSP---TVLLRS 220 (297)
T ss_dssp CC------------CCEEEEEET-TSCEEEE--EEETTTTEEEEEEEECCCSSCEE---------EEEECC---CCSSSE
T ss_pred CcccccccCCCCCCcceEEEEcC-CCcEEEE--EEcCCCceEEEEEEecCCCCceE---------EEEECC---CCCCce
Confidence 7 345555554 4555555 444432 1 12221221222 234432 43 46
Q ss_pred EEEEEEECCEEEEEEEECCCCce--EEec--cCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEc
Q 004735 371 IACSYRQNGRSYLGILDDFGHSL--SLLD--IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTL 431 (732)
Q Consensus 371 l~~~s~~~g~~~ly~~~~~~~~~--~~lt--~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl 431 (732)
++.+...++.-.||-++...+.. +.+. .....+..+ ..+++.+++.++. ++.-.||..+.
T Consensus 221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~-D~~v~lw~~~~ 285 (297)
T 2pm7_B 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENL 285 (297)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET-TSCEEEEEECT
T ss_pred EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC-CCcEEEEEECC
Confidence 66777778888888665432222 2231 123345555 3445555555543 44444555443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-05 Score=86.01 Aligned_cols=213 Identities=8% Similarity=0.067 Sum_probs=119.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~ 166 (732)
..+.+++|+| ++.+.+.-. .++...+|-.... ..+.+.... .. .....++.++++ .++++...++.
T Consensus 165 ~~V~~l~f~p~~~~~l~s~s---~D~~v~iwd~~~~---~~~~~~~~~-~~-----~~~~~~~~~~~~~~~l~~g~~dg~ 232 (435)
T 4e54_B 165 GSITGLKFNPLNTNQFYASS---MEGTTRLQDFKGN---ILRVFASSD-TI-----NIWFCSLDVSASSRMVVTGDNVGN 232 (435)
T ss_dssp CCCCEEEECSSCTTEEEEEC---SSSCEEEEETTSC---EEEEEECCS-SC-----SCCCCCEEEETTTTEEEEECSSSB
T ss_pred CCEEEEEEeCCCCCEEEEEe---CCCEEEEeeccCC---ceeEEeccC-CC-----CccEEEEEECCCCCEEEEEeCCCc
Confidence 4567899998 666655544 2466666654211 212221111 00 111234455543 45566667889
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc---cCC
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV---SGS 243 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt---~~~ 243 (732)
|.++|+.+ .....+... ........|+|+++.++++...+ ..|.++|+.+++. ...+. ...
T Consensus 233 i~~wd~~~--~~~~~~~~h----~~~v~~v~~~p~~~~~~~s~s~d--------~~v~iwd~~~~~~--~~~~~~~~~h~ 296 (435)
T 4e54_B 233 VILLNMDG--KELWNLRMH----KKKVTHVALNPCCDWFLATASVD--------QTVKIWDLRQVRG--KASFLYSLPHR 296 (435)
T ss_dssp EEEEESSS--CBCCCSBCC----SSCEEEEEECTTCSSEEEEEETT--------SBCCEEETTTCCS--SSCCSBCCBCS
T ss_pred EeeeccCc--ceeEEEecc----cceEEeeeecCCCceEEEEecCc--------ceeeEEecccccc--cceEEEeeecc
Confidence 99999986 544445443 34456788999998766665433 4567778876541 11221 223
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCC-C-CccccCcCceeCCCCc-EEEEEec
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-P-TIVESPTEPKWSSKGE-LFFVTDR 320 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~-~-~~~~~~~~~~wspDg~-l~~~~~~ 320 (732)
..+...+|||||++|+..+. ...|.++|+. +++.. ..+.... . ..........|+|++. ++.....
T Consensus 297 ~~v~~~~~spdg~~l~s~~~--------D~~i~iwd~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (435)
T 4e54_B 297 HPVNAACFSPDGARLLTTDQ--------KSEIRVYSAS-QWDCP--LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP 365 (435)
T ss_dssp SCEEECCBCTTSSEEEEEES--------SSCEEEEESS-SSSSE--EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCC
T ss_pred ccccceeECCCCCeeEEEcC--------CCEEEEEECC-CCccc--eEEecccccccccceeEEEEEcCCCCEEEEEEcC
Confidence 44567899999999886652 2348899988 66531 2221111 0 0002234567999888 4443222
Q ss_pred cC--------CeeeEEEEeccCCeEEEe
Q 004735 321 KN--------GFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 321 ~~--------g~~~l~~~d~~~g~~~~l 340 (732)
.. ....|.++|..+|+....
T Consensus 366 d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 366 DPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp CTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred CCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 01 123477888888775543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-05 Score=84.25 Aligned_cols=205 Identities=12% Similarity=0.039 Sum_probs=116.7
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
..++|+|+|+ |+++ +.. ...|+++|++++. .+.+........ ++|+|||+.|++..... ..
T Consensus 134 ~~la~d~~g~-lyv~-d~~-------~~~I~~id~~~g~---~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~------~~ 194 (409)
T 3hrp_A 134 WGIAAVGNNT-VLAY-QRD-------DPRVRLISVDDNK---VTTVHPGFKGGK-PAVTKDKQRVYSIGWEG------TH 194 (409)
T ss_dssp EEEEECSTTE-EEEE-ETT-------TTEEEEEETTTTE---EEEEEETCCBCB-CEECTTSSEEEEEBSST------TC
T ss_pred eEEEEeCCCC-EEEE-ecC-------CCcEEEEECCCCE---EEEeeccCCCCc-eeEecCCCcEEEEecCC------Cc
Confidence 5677999998 4444 422 2689999999887 666554433333 89999999887665322 22
Q ss_pred EEEEEEecCCCce-eeeEEe-cCCCCCccccCcCceeCC-CCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCC
Q 004735 274 ELWVGYISENGDV-YKRVCV-AGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 350 (732)
Q Consensus 274 ~l~v~d~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~ 350 (732)
.|++++.. ++.. ..+..+ .... ..+..++++| +|.||+ ++. ...|++++++++..+.+.... .....
T Consensus 195 ~I~~~d~~-~~~~~~~~g~~~~~~~----~~p~~iav~p~~g~lyv-~d~---~~~I~~~d~~~~~~~~~~~~~-~~g~~ 264 (409)
T 3hrp_A 195 TVYVYMKA-SGWAPTRIGQLGSTFS----GKIGAVALDETEEWLYF-VDS---NKNFGRFNVKTQEVTLIKQLE-LSGSL 264 (409)
T ss_dssp EEEEEEGG-GTTCEEEEEECCTTSC----SCCCBCEECTTSSEEEE-ECT---TCEEEEEETTTCCEEEEEECC-CCSCC
T ss_pred eEEEEEcC-CCceeEEeeeccchhc----CCcEEEEEeCCCCeEEE-EEC---CCcEEEEECCCCCEEEEeccc-ccCCC
Confidence 69999987 4432 111111 2122 4567889999 455776 443 237999999888765552110 00111
Q ss_pred ceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec-cC--------------CCceEEe-eEeCCEEE
Q 004735 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD-IP--------------FTDIDNI-TLGNDCLF 414 (732)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt-~~--------------~~~v~~~-~~~~~~~~ 414 (732)
.|.|. ..+.|.+ +++.||++.. +...|++++.++. ...+. .. ......+ ..+++. +
T Consensus 265 ~~~P~-~~ia~~p---~~g~lyv~d~--~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-l 336 (409)
T 3hrp_A 265 GTNPG-PYLIYYF---VDSNFYMSDQ--NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-F 336 (409)
T ss_dssp CCSSC-CEEEEET---TTTEEEEEET--TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-E
T ss_pred CCCcc-ccEEEeC---CCCEEEEEeC--CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-E
Confidence 11110 1455553 4678887753 3346888888765 33332 11 1223444 344455 4
Q ss_pred EEEeCCCCCcEEEEEEcCCCcc
Q 004735 415 VEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 415 ~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
|++.. .....|+++++.++++
T Consensus 337 yvad~-~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 337 YIVDG-FKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEEET-TTTCEEEEEETTTTEE
T ss_pred EEEeC-CCCCEEEEEECCCCEE
Confidence 44432 0245788999777764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-05 Score=82.47 Aligned_cols=260 Identities=12% Similarity=0.044 Sum_probs=134.6
Q ss_pred CccCceEEcCCCcEEEE-------eecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC--CEEEE
Q 004735 89 KRLGGTAVDGHGRLIWL-------ESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG--DTVIF 159 (732)
Q Consensus 89 ~~~~~~~~~pg~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~--~~i~f 159 (732)
..++++.|++.+.+|+. +.. .+ .|++++..+| +.+.+.... .. -.......+.++. +.+++
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~---~~--~i~~~d~~~g-~~~~~~~~~--~~--~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKP---AG--EILRIDLKTG-KKTVICKPE--VN--GYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEE---CC--EEEEECTTTC-CEEEEECCE--ET--TEECCEEEEEECSSSSEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCC---CC--EEEEEeCCCC-cEEEEEecc--cC--CCCCCCceEEEecCCCcEEE
Confidence 45789999985578888 432 23 4666665543 333222100 00 0001122344443 46666
Q ss_pred EeCCCCeEEEEeCCCCCCCceec-CCCC-CCCCeEeeceeecCCCCEEEEEEeccC-------CCCCCceeEEEEEEcCC
Q 004735 160 SNYKDQRLYKHSIDSKDSSPLPI-TPDY-GEPLVSYADGIFDPRFNRYVTVREDRR-------QDALNSTTEIVAIALNG 230 (732)
Q Consensus 160 ~~~~~~~l~~~d~~~~~~~~~~l-t~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~-------~~~~~~~~~l~~~d~~~ 230 (732)
... .+.|++++.+ ++.+.+ .... ........+..++|||+.+ +...... .........|++++.+
T Consensus 88 ~~~-~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 88 ADM-RLGLLVVQTD---GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EET-TTEEEEEETT---SCEEECCSBCTTSCBCBCCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred EEC-CCCEEEEeCC---CCEEEEEeccCCCccccCCcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCC-
Confidence 654 3479999987 445544 3211 1111234677899999853 3332110 0000113689999987
Q ss_pred CCccccEEcccCCCceeccccC----CCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 231 QNIQEPKVLVSGSDFYAFPRMD----PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 231 ~~~~~~~~lt~~~~~~~~p~~S----PDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
++ .+.+...........|+ |||+.|++.... ...|++++++.+|+......+..........+..+
T Consensus 162 g~---~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~-------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 162 GQ---MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP-------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp SC---EEEEEEEESSEEEEEEEECTTSCEEEEEEEETT-------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred CC---EEEeccCCCCcceEEEecccCCCCCEEEEEECC-------CCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 65 55544333334567899 999888666422 34589998863455433333222110000124567
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
.+++||++++.... ...|+++|+++++........ ..+ ...+.+.+ +++.||++...+ ..|+++
T Consensus 232 ~~d~~G~l~v~~~~---~~~i~~~d~~~g~~~~~~~~~-----~~~---~~~i~~~~---dg~~l~v~~~~~--~~l~~~ 295 (314)
T 1pjx_A 232 DFDEDNNLLVANWG---SSHIEVFGPDGGQPKMRIRCP-----FEK---PSNLHFKP---QTKTIFVTEHEN--NAVWKF 295 (314)
T ss_dssp EEBTTCCEEEEEET---TTEEEEECTTCBSCSEEEECS-----SSC---EEEEEECT---TSSEEEEEETTT--TEEEEE
T ss_pred EECCCCCEEEEEcC---CCEEEEEcCCCCcEeEEEeCC-----CCC---ceeEEECC---CCCEEEEEeCCC--CeEEEE
Confidence 89999986655433 236888998866532222111 011 12233432 566577665433 357777
Q ss_pred ECCC
Q 004735 387 DDFG 390 (732)
Q Consensus 387 ~~~~ 390 (732)
+++.
T Consensus 296 ~~~~ 299 (314)
T 1pjx_A 296 EWQR 299 (314)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 7654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.8e-07 Score=96.20 Aligned_cols=201 Identities=8% Similarity=0.068 Sum_probs=105.8
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
....+|+|||++|+....+ ..|.++++.++.......+......+...+|||||++|+..+.+
T Consensus 14 v~~~~~s~~g~~l~~~~~d---------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-------- 76 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTAT---------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-------- 76 (377)
T ss_dssp CSCCEECSSSSEEECCCSS---------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT--------
T ss_pred EEEEEECCCCCEEEEecCC---------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC--------
Confidence 3567899999986654332 45667777766200023344444566778999999999877632
Q ss_pred cEEEEEEecCCCc-eeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCe----EEEecc-cccc
Q 004735 273 AELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE----VLAIYS-LDAE 346 (732)
Q Consensus 273 ~~l~v~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~----~~~l~~-~~~~ 346 (732)
..|.++|+. +++ ......+.+.. ..+..+.|+|||++++.... .+. |.++|+.+++ .+.+.. ....
T Consensus 77 ~~v~vwd~~-~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~h~~~ 148 (377)
T 3dwl_C 77 RNAYVYEKR-PDGTWKQTLVLLRLN----RAATFVRWSPNEDKFAVGSG-ARV--ISVCYFEQENDWWVSKHLKRPLRST 148 (377)
T ss_dssp SSEEEC-------CCCCEEECCCCS----SCEEEEECCTTSSCCEEEES-SSC--EEECCC-----CCCCEEECSSCCSC
T ss_pred CeEEEEEcC-CCCceeeeeEecccC----CceEEEEECCCCCEEEEEec-CCe--EEEEEECCcccceeeeEeecccCCC
Confidence 238888887 554 22234444443 56788999999993334433 343 5566766664 333432 2222
Q ss_pred cCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC----------------Cc-eEEeccCCCceEEe-eE
Q 004735 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG----------------HS-LSLLDIPFTDIDNI-TL 408 (732)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~----------------~~-~~~lt~~~~~v~~~-~~ 408 (732)
+.. +.|.+ +++ ++++...++.-.||-+.... ++ ...+ .....+..+ ..
T Consensus 149 v~~---------~~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s 214 (377)
T 3dwl_C 149 ILS---------LDWHP---NNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS 214 (377)
T ss_dssp EEE---------EEECT---TSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC
T ss_pred eEE---------EEEcC---CCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC
Confidence 222 33432 555 44455567777777653211 11 1122 233446666 34
Q ss_pred eCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 409 GNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 409 ~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+++.+++.++.. ..|.++|+.+++
T Consensus 215 p~~~~l~~~~~d---~~i~iwd~~~~~ 238 (377)
T 3dwl_C 215 PSGNALAYAGHD---SSVTIAYPSAPE 238 (377)
T ss_dssp TTSSCEEEEETT---TEEC-CEECSTT
T ss_pred CCCCEEEEEeCC---CcEEEEECCCCC
Confidence 455555555433 357777777765
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=9.7e-06 Score=93.21 Aligned_cols=231 Identities=10% Similarity=0.007 Sum_probs=135.1
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCC-----ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSS-----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~-----~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
.++++...++.|.++++..+ .. .+.++.. .......+|||||++|+....+ ..|.++|+.+
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~-~~~~~~~~~~~~~h----~~~v~~v~~s~~g~~l~sgs~D---------g~v~vwd~~~ 461 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKD-DKAYGVAQRRLTGH----SHFVEDVVLSSDGQFALSGSWD---------GELRLWDLAA 461 (694)
T ss_dssp SEEEEEETTSEEEEEECCCS-TTCSCEEEEEEECC----SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTT
T ss_pred CEEEEEeCCCcEEEEEccCC-CcccccccceecCC----CCcEEEEEECCCCCEEEEEeCC---------CcEEEEECCC
Confidence 57777778888999998751 11 1234433 3345678899999986655442 5888999988
Q ss_pred CCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 231 ~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
+.. .+.+......+...+|||||++|+-.+.+ ..|.++|+. +... ..+..... .....+..+.|+|
T Consensus 462 ~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~D--------~~i~iwd~~-~~~~--~~~~~~~~-~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 462 GVS--TRRFVGHTKDVLSVAFSLDNRQIVSASRD--------RTIKLWNTL-GECK--YTISEGGE-GHRDWVSCVRFSP 527 (694)
T ss_dssp TEE--EEEEECCSSCEEEEEECTTSSCEEEEETT--------SCEEEECTT-SCEE--EEECSSTT-SCSSCEEEEEECS
T ss_pred Ccc--eeEEeCCCCCEEEEEEeCCCCEEEEEeCC--------CEEEEEECC-CCcc--eeeccCCC-CCCCcEEEEEEeC
Confidence 761 33444445566778999999999866632 237777865 3322 22222111 0003466789999
Q ss_pred CCc--EEEEEeccCCeeeEEEEeccCCeEEEecc-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 311 KGE--LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 311 Dg~--l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
++. ++++... .+. |.++|+.+++...... ....+. .+.|.+ +++ ++++...++.-.|| |
T Consensus 528 ~~~~~~l~s~s~-d~~--v~vwd~~~~~~~~~~~~h~~~v~---------~v~~sp---dg~-~l~sg~~Dg~i~iw--d 589 (694)
T 3dm0_A 528 NTLQPTIVSASW-DKT--VKVWNLSNCKLRSTLAGHTGYVS---------TVAVSP---DGS-LCASGGKDGVVLLW--D 589 (694)
T ss_dssp CSSSCEEEEEET-TSC--EEEEETTTCCEEEEECCCSSCEE---------EEEECT---TSS-EEEEEETTSBCEEE--E
T ss_pred CCCcceEEEEeC-CCe--EEEEECCCCcEEEEEcCCCCCEE---------EEEEeC---CCC-EEEEEeCCCeEEEE--E
Confidence 974 5555544 444 5566777766554332 222222 233432 554 55566667766665 6
Q ss_pred CCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 388 DFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 388 ~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+.+++..........+..+ ..+++.+++.+.. ..|.++|+.+++.
T Consensus 590 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 590 LAEGKKLYSLEANSVIHALCFSPNRYWLCAATE----HGIKIWDLESKSI 635 (694)
T ss_dssp TTTTEEEECCBCSSCEEEEEECSSSSEEEEEET----TEEEEEETTTTEE
T ss_pred CCCCceEEEecCCCcEEEEEEcCCCcEEEEEcC----CCEEEEECCCCCC
Confidence 6666543322334446666 4455555544432 2488999988764
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.5e-07 Score=94.57 Aligned_cols=112 Identities=10% Similarity=-0.064 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCCCccCCc-ccHHHHHHHH-CCCEEEEEcCCCCCCCChhhHHhh---ccCCCc----ccHHHHHHHHHH
Q 004735 494 KPPLLVKSHGGPTSEARGI-LNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERL---LGRWGI----VDVNDCCSCATF 564 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~-~G~~v~~~d~rG~~g~g~~~~~~~---~~~~~~----~~~~D~~~~i~~ 564 (732)
..| ||++|||++...... .......+++ .|+.|+++|+||.|.+.. ..... ..+++. ..++|+.+.+++
T Consensus 38 g~P-i~l~~Ggeg~~~~~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p-~~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~ 115 (446)
T 3n2z_B 38 GGS-ILFYTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLP-FGDNSFKDSRHLNFLTSEQALADFAELIKH 115 (446)
T ss_dssp TCE-EEEEECCSSCHHHHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCT-TGGGGGSCTTTSTTCSHHHHHHHHHHHHHH
T ss_pred CCC-EEEEeCCCCcchhhhhcccHHHHHHHHhCCcEEEEecCCCCCCCC-CCccccccchhhccCCHHHHHHHHHHHHHH
Confidence 346 566688865432211 1122333444 489999999997654421 11111 112221 237788888888
Q ss_pred HHhcC-CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 565 LVGSG-KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 565 l~~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
+..+. .....+++++||||||.++++++. +|+++.++|+.++.
T Consensus 116 l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssap 160 (446)
T 3n2z_B 116 LKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAP 160 (446)
T ss_dssp HHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCC
T ss_pred HHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEeccc
Confidence 87652 234468999999999999999998 99999999987753
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.7e-06 Score=91.33 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=108.3
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC-----ceeccccCCCCCeEEEEeccC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-----FYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~-----~~~~p~~SPDG~~la~~~~~~ 265 (732)
......+|||||++|+....+ ..+.+++.++ . ...+. ... .+...+|||||+.||..+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~d---------g~V~iwd~~~-~---l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs--- 148 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNN---------GNVSVFKDNK-M---LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN--- 148 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETT---------SCEEEEETTE-E---EEECC-CSSCSTTTCEEEEEECSSSSCEEEEE---
T ss_pred CcEEEEEECCCCCEEEEEeCC---------CcEEEEeCCc-e---eeecc-CCCccccccEEEEEEcCCCCEEEEEc---
Confidence 345678899999998766553 3566677543 2 33333 222 356789999999998776
Q ss_pred CCCCCCccEEEEEEecCCCcee-----eeEEe----cCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCe
Q 004735 266 PNMPWDKAELWVGYISENGDVY-----KRVCV----AGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 266 ~~~~~~~~~l~v~d~~~~g~~~-----~~~~~----~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
...+|.++|+. ++... .+..+ .+.. ..+..++|+||| ++..+.+ ..++.+++++++
T Consensus 149 -----~DGtVkIWd~~-~~~l~~~~~i~l~ti~~~~~gh~----~~V~sVawSPdg-Laass~D----~tVrlWd~~~~~ 213 (588)
T 2j04_A 149 -----EDGELQFFSIR-KNSENTPEFYFESSIRLSDAGSK----DWVTHIVWYEDV-LVAALSN----NSVFSMTVSASS 213 (588)
T ss_dssp -----TTSEEEEEECC-CCTTTCCCCEEEEEEECSCTTCC----CCEEEEEEETTE-EEEEETT----CCEEEECCCSSS
T ss_pred -----CCCEEEEEECC-CCccccccceeeeeeeccccccc----ccEEEEEEcCCc-EEEEeCC----CeEEEEECCCCc
Confidence 34568899988 56421 12333 2222 456788999999 5543332 346666777765
Q ss_pred EE----Eeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec-cCCCceEEe-e--
Q 004735 337 VL----AIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD-IPFTDIDNI-T-- 407 (732)
Q Consensus 337 ~~----~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt-~~~~~v~~~-~-- 407 (732)
.. .+... ...+. .+.|. ++.|+.++ ++ .|.+++..+++...+. .....+..+ .
T Consensus 214 ~~~~~~tL~~~h~~~V~---------svaFs-----g~~LASa~--~~--tIkLWd~~~~~~~~~~~gh~~~V~~va~~~ 275 (588)
T 2j04_A 214 HQPVSRMIQNASRRKIT---------DLKIV-----DYKVVLTC--PG--YVHKIDLKNYSISSLKTGSLENFHIIPLNH 275 (588)
T ss_dssp SCCCEEEEECCCSSCCC---------CEEEE-----TTEEEEEC--SS--EEEEEETTTTEEEEEECSCCSCCCEEEETT
T ss_pred cccceeeecccccCcEE---------EEEEE-----CCEEEEEe--CC--eEEEEECCCCeEEEEEcCCCceEEEEEeee
Confidence 32 23211 11222 23442 24555443 34 5666688888775554 334446655 3
Q ss_pred EeCCEEEEEEeCCCCCcEEEEEE
Q 004735 408 LGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
.+++..+..+. .++. .+|..|
T Consensus 276 s~d~~~La~a~-edG~-klw~~d 296 (588)
T 2j04_A 276 EKESTILLMSN-KTSY-KVLLED 296 (588)
T ss_dssp CSSCEEEEECS-SCEE-EEEESS
T ss_pred CCCCCEEEEEc-CCCC-EEEeec
Confidence 55555554444 3333 677653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.7e-06 Score=88.19 Aligned_cols=76 Identities=7% Similarity=0.007 Sum_probs=47.2
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE-------ecCCCCCccccCcCceeCCCC-cEE
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-------VAGFDPTIVESPTEPKWSSKG-ELF 315 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~wspDg-~l~ 315 (732)
..+....|+|||+.|+.. . ...|.++|+...++. ... +.+.. ..+..+.|+||| +++
T Consensus 178 ~~v~~~~~~~~~~~l~s~--~-------d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l 242 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA--D-------DLRINLWHLEITDRS--FNIVDIKPANMEELT----EVITAAEFHPNSCNTF 242 (447)
T ss_dssp SCCCEEEECTTSSEEEEE--C-------SSEEEEEETTEEEEE--EEEEECCCSSGGGCC----CCEEEEEECSSCTTEE
T ss_pred cceEEEEEcCCCCEEEEe--C-------CCeEEEEECCCCCce--eeeeecccccccccC----cceEEEEECCCCCcEE
Confidence 445667899999988753 2 234888888722222 221 22332 457788999999 666
Q ss_pred EEEeccCCeeeEEEEeccCCeE
Q 004735 316 FVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
++... .| .|.++|+.+++.
T Consensus 243 ~s~~~-dg--~i~iwd~~~~~~ 261 (447)
T 3dw8_B 243 VYSSS-KG--TIRLCDMRASAL 261 (447)
T ss_dssp EEEET-TS--CEEEEETTTCSS
T ss_pred EEEeC-CC--eEEEEECcCCcc
Confidence 55554 44 466667777653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.1e-05 Score=80.07 Aligned_cols=290 Identities=9% Similarity=0.014 Sum_probs=148.7
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCC
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~ 165 (732)
...+.++.|+| ++.++- .. .++...+|..... .....+.. +.......+++++ ..+++...++
T Consensus 66 ~~~V~~~~~sp~~~~l~s-~s---~D~~v~iWd~~~~--~~~~~~~~---------h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVS-AS---QDGRLIVWNALTS--QKTHAIKL---------HCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp SSCEEEEEECTTSSCEEE-EE---TTSEEEEEETTTT--EEEEEEEC---------CCTTCCCCEECTTSSEEEECCSSS
T ss_pred ccEEEEEEEcCCCCEEEE-Ee---CCCeEEEEECCCC--ccceEEec---------CCCCEEEEEECCCCCEEEEeeCCC
Confidence 34567899999 665543 32 3577677765322 11111111 1111222333322 3445555677
Q ss_pred eEEEEeCCCCC---C---CceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc
Q 004735 166 RLYKHSIDSKD---S---SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (732)
Q Consensus 166 ~l~~~d~~~~~---~---~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 239 (732)
.+.++++.+.. + ..+.++.. ........|+|++...+++...+ ..|.++|+.+++ ....
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh----~~~v~~~~~~~~~~~~l~s~s~D--------~~i~~wd~~~~~---~~~~ 195 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGH----KGYASSCQYVPDQETRLITGSGD--------QTCVLWDVTTGQ---RISI 195 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCC----SSCCCCCBCCSSSSSCEEEECTT--------SCEEEECTTTCC---EEEE
T ss_pred cEEEEECCCCccccCCccceeeccCC----CcceEEEEEecCCCCEEEEECCC--------CcEEEEEcCCCc---EEEE
Confidence 78888876410 0 01122222 22345667899765434444322 478888998876 3332
Q ss_pred c-----c-CCCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 240 V-----S-GSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 240 t-----~-~~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
. . ....+....|+| |++.|+-.+. ...|.++|+...++. ...+.+.. ..+..+.|+|||
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~--------D~~v~~wd~~~~~~~--~~~~~~h~----~~v~~v~~~p~~ 261 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSLNANMFISGSC--------DTTVRLWDLRITSRA--VRTYHGHE----GDINSVKFFPDG 261 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSSSCCEEEEEET--------TSCEEEEETTTTCCC--CEEECCCS----SCCCEEEECTTS
T ss_pred eecccCCCCccCeEEEEeecCCCCEEEEEEC--------CCeEEEEECCCCCcc--eEEECCcC----CCeEEEEEecCC
Confidence 2 1 122344556765 8887765542 233888898623333 45555554 667889999999
Q ss_pred cEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 313 ~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
+.+++... .+ .|.++|+.+++........... ...-.+....+.|.+ +++.| ++...+|. |+++|...++
T Consensus 262 ~~l~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~---~g~~l-~~g~~dg~--i~vwd~~~~~ 331 (380)
T 3iz6_a 262 QRFGTGSD-DG--TCRLFDMRTGHQLQVYNREPDR-NDNELPIVTSVAFSI---SGRLL-FAGYSNGD--CYVWDTLLAE 331 (380)
T ss_dssp SEEEEECS-SS--CEEEEETTTTEEEEEECCCCSS-SCCSSCSCSEEEECS---SSSEE-EEECTTSC--EEEEETTTCC
T ss_pred CeEEEEcC-CC--eEEEEECCCCcEEEEecccccc-cccccCceEEEEECC---CCCEE-EEEECCCC--EEEEECCCCc
Confidence 95555444 34 3666788887655443221110 000011123445553 55544 45545565 4455776665
Q ss_pred eE-Eec----cCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 393 LS-LLD----IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 393 ~~-~lt----~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
.. .+. .....|..+ ..+++.+++.++ .++ .|.++++.++
T Consensus 332 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~--~i~iW~~~~~ 376 (380)
T 3iz6_a 332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGS-WDK--NLKIWAFSGH 376 (380)
T ss_dssp EEEEECCSCSSCCCCCCEEEECSSSSEEEEEC-TTS--CEEEEECCSS
T ss_pred eEEEEecccCCCCCceEEEEECCCCCEEEEee-CCC--CEEEEecCCC
Confidence 43 331 234446666 345555555444 332 4555566554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.1e-05 Score=78.62 Aligned_cols=157 Identities=9% Similarity=-0.027 Sum_probs=83.3
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCC---C--CCCe-EeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---G--EPLV-SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 152 ~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~---~--~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.+.+.++.....+++||++|+.+.-.+++....-. - ..+. +-.....+||| .++....+..+ .....|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g---~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEG---EGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTS---CSCCEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCC---CCCCeEEE
Confidence 45668888888888999999974102232221110 0 0011 22344689999 32222232211 12478999
Q ss_pred EEcCCCCccccEEcccC--C-CceeccccCCCCCeEEEEeccC-----CCC-C-----CCccEEEEEEecCCCceeeeEE
Q 004735 226 IALNGQNIQEPKVLVSG--S-DFYAFPRMDPRGERMAWIEWHH-----PNM-P-----WDKAELWVGYISENGDVYKRVC 291 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~--~-~~~~~p~~SPDG~~la~~~~~~-----~~~-~-----~~~~~l~v~d~~~~g~~~~~~~ 291 (732)
+|.++.+. ...+..+ . .+.....|+||++.++-..|-. .+. + ....+|.++|++ +++......
T Consensus 169 lD~~T~~v--~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~tI~ 245 (462)
T 2ece_A 169 LDHYSFEP--LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIHSLT 245 (462)
T ss_dssp ECTTTCCE--EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEEEEE
T ss_pred EECCCCeE--EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEeeEEe
Confidence 99998872 3334322 2 3344577899999664433321 110 1 125789999998 676532222
Q ss_pred ecCCCCCccccCcCc--eeCCCCc-EEEEEe
Q 004735 292 VAGFDPTIVESPTEP--KWSSKGE-LFFVTD 319 (732)
Q Consensus 292 ~~~~~~~~~~~~~~~--~wspDg~-l~~~~~ 319 (732)
+.... .....+ .++|||+ .|+...
T Consensus 246 vg~~g----~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 246 LGEEN----RMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp SCTTE----EEEEEEEECSSTTCCEEEEEEE
T ss_pred cCCCC----CccceeEeeECCCCCEEEEEEe
Confidence 21111 222233 4599999 554444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=6.6e-05 Score=83.28 Aligned_cols=246 Identities=10% Similarity=0.033 Sum_probs=129.1
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCcee-cCCCC--CC-----CCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDY--GE-----PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~-lt~~~--~~-----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
++..+++.+...+.+.++|..+ .++.. +.... .. +..+......|+++..+++...+ ...|+
T Consensus 254 DGk~l~v~n~~~~~v~ViD~~t--~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~--------~g~v~ 323 (567)
T 1qks_A 254 EDKYAIAGAYWPPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE--------TGKIL 323 (567)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT--------TTEEE
T ss_pred CCCEEEEEEccCCeEEEEECCC--CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC--------CCeEE
Confidence 3457777777778999999876 55433 22110 00 01144556678888765544332 26899
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccC-
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP- 303 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~- 303 (732)
++|....+.-.++.+.. ..+.....|+|||++++... .. ...|.++|++ ++++.......+.. ...
T Consensus 324 ~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~-~~------sn~V~ViD~~-t~kl~~~i~vgg~~----Phpg 390 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAA-NA------RNKLVVIDTK-EGKLVAIEDTGGQT----PHPG 390 (567)
T ss_dssp EEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEE-GG------GTEEEEEETT-TTEEEEEEECSSSS----BCCT
T ss_pred EEecCCCccceeeeeec-cccccCceECCCCCEEEEEe-CC------CCeEEEEECC-CCcEEEEEeccCcC----CCCc
Confidence 99987643000122222 22334567999999886554 22 3459999998 78763332220221 111
Q ss_pred cCcee-CCCCc-EEEEEeccCCeeeEEEEeccCCe--------EEEecccccccCCCceeecccceeeeeecCCCCEEEE
Q 004735 304 TEPKW-SSKGE-LFFVTDRKNGFWNLHKWIESNNE--------VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC 373 (732)
Q Consensus 304 ~~~~w-spDg~-l~~~~~~~~g~~~l~~~d~~~g~--------~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~ 373 (732)
..+.| .||+. ++++... +...|.++|.++++ .+.|.... ..+.+. ...+ +++.+|+
T Consensus 391 ~g~~~~~p~~g~v~~t~~~--g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i------~~~p---~~~~l~v 456 (567)
T 1qks_A 391 RGANFVHPTFGPVWATSHM--GDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFI------KTHP---NSQYLYV 456 (567)
T ss_dssp TCEEEEETTTEEEEEEEBS--SSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCE------ECCT---TCSEEEE
T ss_pred cceeeECCCCCcEEEeCCC--CCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEE------EeCC---CCCeEEE
Confidence 23344 68866 6655544 44457778876622 22332110 111111 1222 6666655
Q ss_pred EEEECC-----EEEEEEEECCCC-----c--eEEecc--------CCCceEEe--eEeCCEEEEEEeC-CCCCcEEEEEE
Q 004735 374 SYRQNG-----RSYLGILDDFGH-----S--LSLLDI--------PFTDIDNI--TLGNDCLFVEGAS-GVEPSSVAKVT 430 (732)
Q Consensus 374 ~s~~~g-----~~~ly~~~~~~~-----~--~~~lt~--------~~~~v~~~--~~~~~~~~~~~~~-~~~~~~ly~~d 430 (732)
. .+.+ ...|.++|.++. . .+.|.. +...+..+ ..+++.+++...+ .+...+|.++|
T Consensus 457 ~-~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 457 D-ATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp E-CTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred e-cCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 4 3222 236777887654 1 133421 12223333 3445555554433 33567899999
Q ss_pred cCCCcc
Q 004735 431 LDDHKL 436 (732)
Q Consensus 431 l~~~~~ 436 (732)
.++.++
T Consensus 536 ~~t~~~ 541 (567)
T 1qks_A 536 DKTLEL 541 (567)
T ss_dssp TTTTEE
T ss_pred CCCceE
Confidence 988875
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.38 E-value=6.3e-05 Score=77.31 Aligned_cols=201 Identities=11% Similarity=0.002 Sum_probs=114.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC---CEEEEEeCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKD 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~---~~i~f~~~~~ 164 (732)
..+..+.|+| ++.++.. . .++...+|...... ....+.. .-..+...+.+..+++ +.++++...+
T Consensus 12 ~~v~~~~~~~~~~~l~~~-~---~dg~i~iw~~~~~~--~~~~~~~-----~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATC-S---SDQHIKVFKLDKDT--SNWELSD-----SWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp SCEEEEEECSSSSEEEEE-E---TTSEEEEEEECSSS--CCEEEEE-----EEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cceeEEEEcCCCCEEEEe-e---CCCeEEEEECCCCC--Ccceecc-----eeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 4567899999 6655443 2 35777778765431 1111110 0001222334455553 4566666678
Q ss_pred CeEEEEeCCCCCCCc----------eecCCCCCCCCeEeeceeecCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 165 QRLYKHSIDSKDSSP----------LPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~----------~~lt~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
+.|.++|+.+ +.. ..+... ........|+|+ |+.++....+ ..|.++|+.+++
T Consensus 81 g~v~vwd~~~--~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iwd~~~~~ 145 (351)
T 3f3f_A 81 KTVKLWEEDP--DQEECSGRRWNKLCTLNDS----KGSLYSVKFAPAHLGLKLACLGND---------GILRLYDALEPS 145 (351)
T ss_dssp SCEEEEEECT--TSCTTSSCSEEEEEEECCC----SSCEEEEEECCGGGCSEEEEEETT---------CEEEEEECSSTT
T ss_pred CeEEEEecCC--CcccccccCcceeeeeccc----CCceeEEEEcCCCCCcEEEEecCC---------CcEEEecCCChH
Confidence 8899999876 321 122222 334567889999 9987665542 578889988765
Q ss_pred ccccEEcc-------------cCCCceeccccCCC---CCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCC
Q 004735 233 IQEPKVLV-------------SGSDFYAFPRMDPR---GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 296 (732)
Q Consensus 233 ~~~~~~lt-------------~~~~~~~~p~~SPD---G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~ 296 (732)
. ...+. ..........|+|+ ++.|+.... ...+...+.. .++......+.+..
T Consensus 146 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~h~ 214 (351)
T 3f3f_A 146 D--LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL--------EQAIIYQRGK-DGKLHVAAKLPGHK 214 (351)
T ss_dssp C--TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET--------TEEEEEEECT-TSCEEEEEECCCCC
T ss_pred H--hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC--------CCcEEEEccC-CCceeeeeecCCCC
Confidence 1 11111 11223456789997 887776652 2234444444 56554455555544
Q ss_pred CCccccCcCceeCCCC----cEEEEEeccCCeeeEEEEe
Q 004735 297 PTIVESPTEPKWSSKG----ELFFVTDRKNGFWNLHKWI 331 (732)
Q Consensus 297 ~~~~~~~~~~~wspDg----~l~~~~~~~~g~~~l~~~d 331 (732)
..+..+.|+|+| +++++... .|.-.+|-+.
T Consensus 215 ----~~i~~~~~~p~~~~~~~~l~s~~~-dg~i~iwd~~ 248 (351)
T 3f3f_A 215 ----SLIRSISWAPSIGRWYQLIATGCK-DGRIRIFKIT 248 (351)
T ss_dssp ----SCEEEEEECCCSSCSSEEEEEEET-TSCEEEEEEE
T ss_pred ----cceeEEEECCCCCCcceEEEEEcC-CCeEEEEeCC
Confidence 567889999998 65555555 5655555443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.7e-05 Score=86.78 Aligned_cols=232 Identities=10% Similarity=0.021 Sum_probs=136.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-c
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~ 234 (732)
.++|.+ ...|..+++++ .....|... ......+.|++.+++|+++... ...|+++++++... .
T Consensus 397 ~Ll~an--~~~Ir~i~l~~--~~~~~l~~~----~~~~~gl~~d~~~~~lY~sD~~--------~~~I~~~~l~g~~~~~ 460 (791)
T 3m0c_C 397 YLFFTN--RHEVRKMTLDR--SEYTSLIPN----LRNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVS 460 (791)
T ss_dssp EEEEEC--BSSEEEECTTS--CCCEEEECS----CSSEEEEEEETTTTEEEEEETT--------TTEEEEEEC-------
T ss_pred cccccc--ccceeEeeccC--CcceeeecC----CCceEEEeecccCCeeEEeecc--------ceeEEEEeccCCCCCc
Confidence 466664 34599999986 555555543 1223456788888876665432 26899999986310 0
Q ss_pred ccEEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 235 EPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 235 ~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
..+.+.. +.....+.++.+.++.|||+.. ....|++++++ +... ..++.... ..+..++..|.+.
T Consensus 461 ~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~-------~~~~I~v~~ld-G~~~--~~l~~~~l----~~P~gIaVDp~~g 526 (791)
T 3m0c_C 461 SYDTVISRDIQAPDGLAVDWIHSNIYWTDS-------VLGTVSVADTK-GVKR--KTLFRENG----SKPRAIVVDPVHG 526 (791)
T ss_dssp -CEEEECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETT-SSSE--EEEEECTT----CCEEEEEEETTTT
T ss_pred ceeEEEecCCCCcceeeeeecCCcEEEEec-------CCCeEEEEeCC-CCeE--EEEEeCCC----CCcceEEEecCCC
Confidence 0333332 3344456788888999988763 24569999987 3332 23333222 3456778888755
Q ss_pred -EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 314 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 314 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
|||+ +. .....|+++++++...+.+.... ..|- ..+.+-+ .++.|||+. .+...|+++++++..
T Consensus 527 ~LYwt-D~-g~~~~I~~~~~dG~~~~~lv~~~-----l~~P---~GLavD~---~~~~LYwaD--~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 527 FMYWT-DW-GTPAKIKKGGLNGVDIYSLVTEN-----IQWP---NGITLDL---LSGRLYWVD--SKLHSISSIDVNGGN 591 (791)
T ss_dssp EEEEE-EC-SSSCEEEEEETTSCCEEEEECSS-----CSCE---EEEEEET---TTTEEEEEE--TTTTEEEEEETTSCS
T ss_pred CEEEe-cC-CCCCeEEEEecCCCceEEEEeCC-----CCCc---eEEEEec---CCCeEEEEe--CCCCcEEEEecCCCc
Confidence 6654 44 23367999999887766665321 1221 1233322 577888875 344579999999887
Q ss_pred eEEeccCC---CceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 393 LSLLDIPF---TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 393 ~~~lt~~~---~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
.+.+.... .....+...++++|+.-. ....|++++..+|+
T Consensus 592 ~~~v~~~~~~l~~P~glav~~~~lYwtD~---~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 592 RKTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS 634 (791)
T ss_dssp CEEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred eEEEecCCCccCCCCEEEEeCCEEEEEEC---CCCEEEEEeCCCCc
Confidence 77665431 223344445565554432 23578888866664
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-05 Score=79.68 Aligned_cols=187 Identities=10% Similarity=-0.020 Sum_probs=108.0
Q ss_pred CCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecC--CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc
Q 004735 163 KDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (732)
Q Consensus 163 ~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 239 (732)
.++.+.++++.+ ++ .+.+.... ........|+| +|++++....+ ..|.++|+.+++ ...+
T Consensus 102 ~~~~~~~~~~~~--~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~---~~~~ 164 (343)
T 3lrv_A 102 PGNQITILDSKT--NKVLREIEVDS---ANEIIYMYGHNEVNTEYFIWADNR---------GTIGFQSYEDDS---QYIV 164 (343)
T ss_dssp TTTEEEEEETTT--CCEEEEEECCC---SSCEEEEECCC---CCEEEEEETT---------CCEEEEESSSSC---EEEE
T ss_pred ccCceEEeecCC--cceeEEeecCC---CCCEEEEEcCCCCCCCEEEEEeCC---------CcEEEEECCCCc---EEEE
Confidence 344566667665 44 33333221 23456678999 99986655442 478889999887 5443
Q ss_pred ccC--CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecC-CCCCccccCcCceeCCCCcEEE
Q 004735 240 VSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDPTIVESPTEPKWSSKGELFF 316 (732)
Q Consensus 240 t~~--~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~-~~~~~~~~~~~~~wspDg~l~~ 316 (732)
... ...+....|+|||+.|+... . ...|.++|+. +++.. ...+.. .. ..+..+.|+|||++++
T Consensus 165 ~~~~~~~~i~~~~~~pdg~~lasg~-~-------dg~i~iwd~~-~~~~~-~~~~~~~h~----~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDSLLLALYS-P-------DGILDVYNLS-SPDQA-SSRFPVDEE----AKIKEVKFADNGYWMV 230 (343)
T ss_dssp ECCCSSCCCCEEEECTTSCEEEEEC-T-------TSCEEEEESS-CTTSC-CEECCCCTT----SCEEEEEECTTSSEEE
T ss_pred EecCCCCceEEEEECCCCCEEEEEc-C-------CCEEEEEECC-CCCCC-ccEEeccCC----CCEEEEEEeCCCCEEE
Confidence 322 22456679999999887554 1 2348999998 66542 133444 33 5678899999999444
Q ss_pred EEeccCCeeeEEEEeccCCeEE-Eeccc---ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 317 VTDRKNGFWNLHKWIESNNEVL-AIYSL---DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 317 ~~~~~~g~~~l~~~d~~~g~~~-~l~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
.... + .|.++|+.+++.. .+... ...... ..+.|.+ +++.|+..+..++.-+||.++...+.
T Consensus 231 s~~~--~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~---~g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 231 VECD--Q--TVVCFDLRKDVGTLAYPTYTIPEFKTGT-------VTYDIDD---SGKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEES--S--BEEEEETTSSTTCBSSCCCBC-----CC-------EEEEECT---TSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred EEeC--C--eEEEEEcCCCCcceeecccccccccccc-------eEEEECC---CCCEEEEecCCCCcEEEEEEcccccc
Confidence 4444 3 6777888776432 12110 011111 1234443 66655554443777888887655554
Q ss_pred eE
Q 004735 393 LS 394 (732)
Q Consensus 393 ~~ 394 (732)
+.
T Consensus 297 ~~ 298 (343)
T 3lrv_A 297 WT 298 (343)
T ss_dssp EE
T ss_pred eE
Confidence 44
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-05 Score=78.99 Aligned_cols=200 Identities=9% Similarity=-0.037 Sum_probs=109.5
Q ss_pred ceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCcee---cCCCCCCCCeEeeceeecC--CCCEEEEEEeccCCCCCCcee
Q 004735 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLP---ITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTT 221 (732)
Q Consensus 148 ~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~---lt~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~ 221 (732)
.+..++++ ..+++...++.|.++++.++....+. +... .......+|+| ||+.|+....+ .
T Consensus 15 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~d~~~l~s~~~d---------g 81 (351)
T 3f3f_A 15 HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH----DSSIVAIDWASPEYGRIIASASYD---------K 81 (351)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC----SSCEEEEEECCGGGCSEEEEEETT---------S
T ss_pred eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC----CCcEEEEEEcCCCCCCEEEEEcCC---------C
Confidence 34444433 44556567788999998752011122 2222 33456778999 68886665542 4
Q ss_pred EEEEEEcCCCCc-------cccEEcccCCCceeccccCCC--CCeEEEEeccCCCCCCCccEEEEEEecCCCcee-eeEE
Q 004735 222 EIVAIALNGQNI-------QEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVC 291 (732)
Q Consensus 222 ~l~~~d~~~~~~-------~~~~~lt~~~~~~~~p~~SPD--G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~-~~~~ 291 (732)
.|.++|+.+++. .....+...........|+|| |+.|+... ....|.++|+. +++.. ....
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~dg~v~iwd~~-~~~~~~~~~~ 152 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG--------NDGILRLYDAL-EPSDLRSWTL 152 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--------TTCEEEEEECS-STTCTTCCEE
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec--------CCCcEEEecCC-ChHHhccccc
Confidence 677788876530 002223334455677899999 99888766 23458999987 55421 1110
Q ss_pred ------ec----CCCCCccccCcCceeCCC---CcEEEEEeccCCeeeEEEEeccCCeEEEecc---cccccCCCceeec
Q 004735 292 ------VA----GFDPTIVESPTEPKWSSK---GELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFG 355 (732)
Q Consensus 292 ------~~----~~~~~~~~~~~~~~wspD---g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~ 355 (732)
.. ... ..+..+.|+|+ +++++.... .+. +...+...++...+.. ....+.
T Consensus 153 ~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~~h~~~i~------- 218 (351)
T 3f3f_A 153 TSEMKVLSIPPANHL----QSDFCLSWCPSRFSPEKLAVSAL-EQA--IIYQRGKDGKLHVAAKLPGHKSLIR------- 218 (351)
T ss_dssp EEEEESCSCCCSSCS----CCCEEEEECCCSSSCCEEEEEET-TEE--EEEEECTTSCEEEEEECCCCCSCEE-------
T ss_pred cccccccccccCCcc----cceeEEEeccCCCCCcEEEEecC-CCc--EEEEccCCCceeeeeecCCCCccee-------
Confidence 00 111 45667889997 665544444 232 3333444555433322 121222
Q ss_pred ccceeeeeecCCCC---EEEEEEEECCEEEEEEEEC
Q 004735 356 INSYEIIQSHGEKN---LIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 356 ~~~~~~~~~~~~~~---~l~~~s~~~g~~~ly~~~~ 388 (732)
.+.|.+ ++. .++++...++.-.||-+..
T Consensus 219 --~~~~~p---~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 219 --SISWAP---SIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp --EEEECC---CSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred --EEEECC---CCCCcceEEEEEcCCCeEEEEeCCC
Confidence 233432 431 6777777788777776653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-05 Score=81.68 Aligned_cols=98 Identities=2% Similarity=-0.189 Sum_probs=57.7
Q ss_pred CEEEEEeCCCC----eEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEecc-CCCCCCceeEEEEEEc
Q 004735 155 DTVIFSNYKDQ----RLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIAL 228 (732)
Q Consensus 155 ~~i~f~~~~~~----~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~-~~~~~~~~~~l~~~d~ 228 (732)
.+++..+...+ .++++|.++ ++. ..+..+. . ..+.+||||++++...... .....+..+.|.++|+
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t--~~v~~~i~vG~----~--P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~ 103 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGC--GVTLGHSLGAF----L--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP 103 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECT----T--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred CeEEEECCccCCccceEEEEECCC--CeEEEEEeCCC----C--CceEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 46666776555 899999987 443 2333221 1 1578999999855443210 0000011378999999
Q ss_pred CCCCccccEEcccC--C-----CceeccccCCCCCeEEEEe
Q 004735 229 NGQNIQEPKVLVSG--S-----DFYAFPRMDPRGERMAWIE 262 (732)
Q Consensus 229 ~~~~~~~~~~lt~~--~-----~~~~~p~~SPDG~~la~~~ 262 (732)
.+++. ...+.-+ . ..-.+..+||||++|+...
T Consensus 104 ~T~~v--v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 104 VTFLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp TTCCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred CCCCE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEc
Confidence 99872 2333221 1 1233568999999986654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.1e-05 Score=74.65 Aligned_cols=233 Identities=8% Similarity=0.002 Sum_probs=124.5
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
++.+++....++.|+++|.++ |+ ..++.... .....+..++|||+.++ .. ...|+.+|.+ |+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t--G~~~w~~~~~~---~~~~~~~~~~pdG~ilv--s~---------~~~V~~~d~~-G~ 66 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT--KEIVWEYPLEK---GWECNSVAATKAGEILF--SY---------SKGAKMITRD-GR 66 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT--TEEEEEEECCT---TCCCCEEEECTTSCEEE--EC---------BSEEEEECTT-SC
T ss_pred CCcEEEeeCCCCEEEEEECCC--CeEEEEeCCCc---cCCCcCeEECCCCCEEE--eC---------CCCEEEECCC-CC
Confidence 457888877788999999866 44 33443321 12336677999999654 22 1579999994 44
Q ss_pred ccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 233 IQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
. ...+..+. .......++|||+.|+-.. .. ..+++.+|. +|+..+...+.............+..++|
T Consensus 67 ~--~W~~~~~~~~~~~~~~~~~dG~~lv~~~-~~------~~~v~~vd~--~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 67 E--LWNIAAPAGCEMQTARILPDGNALVAWC-GH------PSTILEVNM--KGEVLSKTEFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp E--EEEEECCTTCEEEEEEECTTSCEEEEEE-ST------TEEEEEECT--TSCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred E--EEEEcCCCCccccccEECCCCCEEEEec-CC------CCEEEEEeC--CCCEEEEEeccCCCCcccccccCceECCC
Confidence 1 44444332 2345677899999775433 21 345777764 46653322222110000012334567899
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeE-EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 390 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~ 390 (732)
|++++... +...|+.+|++ |+. ..+... ..+ + ...+++ +++ +++..... ..|+.+++++
T Consensus 136 G~~lv~~~---~~~~v~~~d~~-G~~~w~~~~~----~~~-~-----~~~~~~---~g~-~~v~~~~~--~~v~~~d~~t 195 (276)
T 3no2_A 136 GNYLVPLF---ATSEVREIAPN-GQLLNSVKLS----GTP-F-----SSAFLD---NGD-CLVACGDA--HCFVQLNLES 195 (276)
T ss_dssp SCEEEEET---TTTEEEEECTT-SCEEEEEECS----SCC-C-----EEEECT---TSC-EEEECBTT--SEEEEECTTT
T ss_pred CCEEEEec---CCCEEEEECCC-CCEEEEEECC----CCc-c-----ceeEcC---CCC-EEEEeCCC--CeEEEEeCcC
Confidence 98554432 23468899998 544 333221 111 1 112231 444 44444333 3599999996
Q ss_pred Cce-EEeccCC------CceEEe-eEeCCEEEEEEeCCC-------CCcEEEEEEcCCCc
Q 004735 391 HSL-SLLDIPF------TDIDNI-TLGNDCLFVEGASGV-------EPSSVAKVTLDDHK 435 (732)
Q Consensus 391 ~~~-~~lt~~~------~~v~~~-~~~~~~~~~~~~~~~-------~~~~ly~~dl~~~~ 435 (732)
|+. .++.... ..+..+ ..+++.+++...... ....++.+|. +|+
T Consensus 196 G~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~ 254 (276)
T 3no2_A 196 NRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGK 254 (276)
T ss_dssp CCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSB
T ss_pred CcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC-CCC
Confidence 654 4454221 123333 345566655543221 3446788775 444
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00023 Score=77.07 Aligned_cols=278 Identities=10% Similarity=0.028 Sum_probs=147.4
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE---CCEEEEEeCCCC
Q 004735 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF---GDTVIFSNYKDQ 165 (732)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~---~~~i~f~~~~~~ 165 (732)
..+..+.|+|++ ...+-. .++...+|....+ +....+.. +...+.+..+. ++..+++...++
T Consensus 163 ~~V~~l~~~~~~-~l~s~s---~dg~i~vwd~~~~---~~~~~~~~--------h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 163 GGVWALKYAHGG-ILVSGS---TDRTVRVWDIKKG---CCTHVFEG--------HNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp SCEEEEEECSTT-EEEEEE---TTSCEEEEETTTT---EEEEEECC--------CSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred cCEEEEEEcCCC-EEEEEe---CCCCEEEEECCCC---cEEEEECC--------CCCccEEEEEecCCCCCEEEEEcCCC
Confidence 345678888733 333332 3477667765432 22211111 11122333333 336667777788
Q ss_pred eEEEEeCCCCCCCceecCCCCCCC------------------CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEP------------------LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~------------------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.|.++|+.+ +............ +....-..++|+|+.++....+ ..|.++|
T Consensus 228 ~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d---------~~i~vwd 296 (464)
T 3v7d_B 228 TLHVWKLPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD---------NTLIVWD 296 (464)
T ss_dssp CEEEEECCC--CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETT---------SCEEEEE
T ss_pred cEEEeeCCC--CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCC---------CeEEEEE
Confidence 899999976 3321110000000 0000112467888886655442 4788899
Q ss_pred cCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
+.+++. ...+...........|+|||+.|+..+. ...|.++|+. +|+. +..+.+.. ..+..+.
T Consensus 297 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~--------dg~i~vwd~~-~~~~--~~~~~~h~----~~v~~~~ 359 (464)
T 3v7d_B 297 VAQMKC--LYILSGHTDRIYSTIYDHERKRCISASM--------DTTIRIWDLE-NGEL--MYTLQGHT----ALVGLLR 359 (464)
T ss_dssp TTTTEE--EEEECCCSSCEEEEEEETTTTEEEEEET--------TSCEEEEETT-TTEE--EEEECCCS----SCEEEEE
T ss_pred CCCCcE--EEEecCCCCCEEEEEEcCCCCEEEEEeC--------CCcEEEEECC-CCcE--EEEEeCCC----CcEEEEE
Confidence 987761 2333334455677899999998876652 2348999998 6754 45555554 5566777
Q ss_pred eCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 308 wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
|+ ++.+++... .|. |..+|+.+++............. ..|.+ +++.++..+ ++. |.+++
T Consensus 360 ~~--~~~l~s~s~-dg~--v~vwd~~~~~~~~~~~~~~~~~~---------~~~~~---~~~~l~~~~--dg~--i~iwd 418 (464)
T 3v7d_B 360 LS--DKFLVSAAA-DGS--IRGWDANDYSRKFSYHHTNLSAI---------TTFYV---SDNILVSGS--ENQ--FNIYN 418 (464)
T ss_dssp EC--SSEEEEEET-TSE--EEEEETTTCCEEEEEECTTCCCE---------EEEEE---CSSEEEEEE--TTE--EEEEE
T ss_pred Ec--CCEEEEEeC-CCc--EEEEECCCCceeeeecCCCCccE---------EEEEe---CCCEEEEec--CCe--EEEEE
Confidence 76 454445444 344 66667777654433322211111 22332 555554443 564 55568
Q ss_pred CCCCceEE--eccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEc
Q 004735 388 DFGHSLSL--LDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTL 431 (732)
Q Consensus 388 ~~~~~~~~--lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl 431 (732)
..+++... +......+..+..+++.+++..+ .++..-++.+|.
T Consensus 419 ~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~-~~g~~~i~~ldf 463 (464)
T 3v7d_B 419 LRSGKLVHANILKDADQIWSVNFKGKTLVAAVE-KDGQSFLEILDF 463 (464)
T ss_dssp TTTCCEEESCTTTTCSEEEEEEEETTEEEEEEE-ETTEEEEEEEEC
T ss_pred CCCCcEEehhhccCCCcEEEEEecCCEEEEEEE-eCCeEEEEEeec
Confidence 88877653 33345557777555665554444 343444555553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-05 Score=80.39 Aligned_cols=226 Identities=8% Similarity=-0.003 Sum_probs=121.1
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-CCCCcc---------cccccc-cCCceeEEE--CC
Q 004735 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAV---------RTTAQE-YGGGAFRIF--GD 155 (732)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~-~~~~~~---------~~~~~~-~g~~~~~~~--~~ 155 (732)
..++++.|++.+.++|++.. .+ .|++++..++ ..+.+. +..+.. ...... .....++++ ++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~---~~--~i~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQ---DG--RVIKYEGPNS-GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp SCCCCEECCTTCSSEEEECT---TS--EEEEECCTTT-CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CCceEEEEcCCCCEEEEEcC---CC--eEEEECCCCC-ceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 46789999985566777653 24 3667766532 222211 111000 000000 011234455 35
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCC-CCCeEeeceeecC-CCCEEEEEEeccCCCC----------CCceeEE
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG-EPLVSYADGIFDP-RFNRYVTVREDRRQDA----------LNSTTEI 223 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~-~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~----------~~~~~~l 223 (732)
.|++.... ..|++++.++ +..+.+..... .......+..++| +|+. ++. +...... ......|
T Consensus 93 ~l~v~d~~-~~i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l-~v~-d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 93 QLYIVDCY-YHLSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGIV-YFT-DVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp EEEEEETT-TEEEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCCE-EEE-ESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred cEEEEECC-CCEEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCEE-EEE-CCcccccccccceehcccCCCceE
Confidence 67666543 4599999876 55555532211 0012346788999 9973 333 3211000 0013689
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccC
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~ 303 (732)
+++|.++++ .+.+..+.....+.+|+|||++|++.... ...|++++++ ++.......+.... + +
T Consensus 168 ~~~d~~~~~---~~~~~~~~~~p~gia~~~dg~~lyv~d~~-------~~~I~~~~~~-~~~~~~~~~~~~~~----g-P 231 (322)
T 2fp8_A 168 IKYDPSTKE---TTLLLKELHVPGGAEVSADSSFVLVAEFL-------SHQIVKYWLE-GPKKGTAEVLVKIP----N-P 231 (322)
T ss_dssp EEEETTTTE---EEEEEEEESCCCEEEECTTSSEEEEEEGG-------GTEEEEEESS-STTTTCEEEEEECS----S-E
T ss_pred EEEeCCCCE---EEEeccCCccCcceEECCCCCEEEEEeCC-------CCeEEEEECC-CCcCCccceEEeCC----C-C
Confidence 999998877 55554333334567899999988766532 3469999987 43222222222221 3 4
Q ss_pred cCceeCCCCcEEEEEecc-------CCeeeEEEEeccCCeEEEec
Q 004735 304 TEPKWSSKGELFFVTDRK-------NGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~-------~g~~~l~~~d~~~g~~~~l~ 341 (732)
..+..++||+|++..... .....|+++|+++...+.+.
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~ 276 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP 276 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE
Confidence 567889999855443220 11457999998755444443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-06 Score=98.46 Aligned_cols=211 Identities=9% Similarity=0.054 Sum_probs=123.1
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCC---CCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCC
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKA---GDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK 163 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~ 163 (732)
...+.++.|++ ++.|||++... ++ |++.+..+ +.....++... +....+.++.+.++.|++++..
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~---~~--I~~~~~~g~~~~~~~~~~i~~~------~~~P~glavD~~~g~LY~tD~~ 473 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQ---RM--ICSTQLDRAHGVSSYDTVISRD------IQAPDGLAVDWIHSNIYWTDSV 473 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTT---TS--BEEEESCCCCC-CCCCCBCCSC------C--CCCEECCCSSSBCEECCTT
T ss_pred CcceEEEccccccCeEEEEecCC---Ce--EEEEecCCCCCCcceEEEEeCC------CCCcceEEEEeeCCcEEEEecc
Confidence 35678999999 89999998643 44 44544432 11222222111 1112233344446688888777
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cC
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SG 242 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~ 242 (732)
.+.|+++++++ ...+.+.... .....+++++|++.+|+++.... ...|+++++++.. .+.+. ..
T Consensus 474 ~~~I~v~d~dg--~~~~~l~~~~---~~~P~giavDp~~g~ly~td~~~-------~~~I~~~~~dG~~---~~~l~~~~ 538 (699)
T 1n7d_A 474 LGTVSVADTKG--VKRKTLFREQ---GSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVD---IYSLVTEN 538 (699)
T ss_dssp TSCEEEEBSSS--CCEEEECCCS---SCCCCCEECCSSSSCCEECCCSS-------SCCEEBCCSSSCC---CCEESCSS
T ss_pred CCeEEEEecCC--CceEEEEeCC---CCCcceEEEccCCCcEEEcccCC-------CCeEEEEeCCCCC---eeEEEeCC
Confidence 78999999986 5555544321 12236678999888766553211 2589999988765 44443 33
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 321 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~ 321 (732)
...-.+.+|+|++++|+|+.. ....|++++++ +... ..++.... . ...+..+.. |+. |||+. .
T Consensus 539 l~~PnGlavd~~~~~LY~aD~-------~~~~I~~~d~d-G~~~--~~~~~~~~-~-~~~P~glav--d~~~lywtd-~- 602 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDS-------KLHSISSIDVN-GGNR--KTILEDEK-R-LAHPFSLAV--FEDKVFWTD-I- 602 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEET-------TTTEEEEECSS-SSCC--EEECCCSS-S-CSSCCCCEE--ETTEEEEEC-S-
T ss_pred CCCccEEEEeccCCEEEEEec-------CCCeEEEEccC-CCce--EEEEecCC-c-CCCceEeEE--ECCEEEEEe-C-
Confidence 344567899999999988763 23569999987 3322 22222211 0 023344555 344 66553 3
Q ss_pred CCeeeEEEEeccCCeEEEec
Q 004735 322 NGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~ 341 (732)
+...|.+++..+|+...+.
T Consensus 603 -~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 603 -INEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp -TTTCEEEEETTTEEEEECC
T ss_pred -CCCeEEEEEccCCCceEEe
Confidence 3457999998877655444
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.5e-05 Score=82.90 Aligned_cols=192 Identities=9% Similarity=-0.025 Sum_probs=110.0
Q ss_pred ceeEEE--CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCC-CCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 148 GAFRIF--GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG-EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 148 ~~~~~~--~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~-~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
.+.+++ |..|+ +...++.+.+++.+ +....+. ... -+...+..++|||||++|+....+ ..|-
T Consensus 89 ~~vawSPdG~~LA-s~s~dg~V~iwd~~---~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D---------GtVk 154 (588)
T 2j04_A 89 RVCKPSPIDDWMA-VLSNNGNVSVFKDN---KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED---------GELQ 154 (588)
T ss_dssp EEEEECSSSSCEE-EEETTSCEEEEETT---EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT---------SEEE
T ss_pred EEEEECCCCCEEE-EEeCCCcEEEEeCC---ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC---------CEEE
Confidence 344444 33555 44467778888865 4333334 210 001235678899999987666552 4788
Q ss_pred EEEcCCCCccc-----cEEcc----cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCcee-eeEEe-c
Q 004735 225 AIALNGQNIQE-----PKVLV----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCV-A 293 (732)
Q Consensus 225 ~~d~~~~~~~~-----~~~lt----~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~-~~~~~-~ 293 (732)
++++.++.... ...+. .....+...+||||| |+..+.+ ..++++|++ +++.. ....+ .
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D--------~tVrlWd~~-~~~~~~~~~tL~~ 223 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN--------NSVFSMTVS-ASSHQPVSRMIQN 223 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT--------CCEEEECCC-SSSSCCCEEEEEC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC--------CeEEEEECC-CCccccceeeecc
Confidence 88988875100 13331 122466778999999 5544422 238888987 55532 12233 2
Q ss_pred CCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceee--eeecCCCCEE
Q 004735 294 GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEI--IQSHGEKNLI 371 (732)
Q Consensus 294 ~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~l 371 (732)
+.. ..+..++|+ |+.+.++.. ..|..+|..+++...+..+. ....+ ++.| . +++..
T Consensus 224 ~h~----~~V~svaFs--g~~LASa~~----~tIkLWd~~~~~~~~~~~gh---~~~V~-----~va~~~s----~d~~~ 281 (588)
T 2j04_A 224 ASR----RKITDLKIV--DYKVVLTCP----GYVHKIDLKNYSISSLKTGS---LENFH-----IIPLNHE----KESTI 281 (588)
T ss_dssp CCS----SCCCCEEEE--TTEEEEECS----SEEEEEETTTTEEEEEECSC---CSCCC-----EEEETTC----SSCEE
T ss_pred ccc----CcEEEEEEE--CCEEEEEeC----CeEEEEECCCCeEEEEEcCC---CceEE-----EEEeeeC----CCCCE
Confidence 333 568899999 463334332 36888888888775444221 12111 2334 3 45566
Q ss_pred EEEEEECCEEEEEEEE
Q 004735 372 ACSYRQNGRSYLGILD 387 (732)
Q Consensus 372 ~~~s~~~g~~~ly~~~ 387 (732)
+.++.++|. +||..+
T Consensus 282 La~a~edG~-klw~~d 296 (588)
T 2j04_A 282 LLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEECSSCEE-EEEESS
T ss_pred EEEEcCCCC-EEEeec
Confidence 777777888 888764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.3e-05 Score=82.72 Aligned_cols=237 Identities=12% Similarity=0.047 Sum_probs=125.7
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+..++++ ..+++...++.|.++|+.+ +. ...+... .......+|+|||++|+....+ ..+.++
T Consensus 71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~--~~~~~~~~~h----~~~v~~~~~s~~g~~las~~~d---------~~v~iw 135 (380)
T 3iz6_a 71 SLDWTPEKNWIVSASQDGRLIVWNALT--SQKTHAIKLH----CPWVMECAFAPNGQSVACGGLD---------SACSIF 135 (380)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTT--TEEEEEEECC----CTTCCCCEECTTSSEEEECCSS---------SCCEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC--CccceEEecC----CCCEEEEEECCCCCEEEEeeCC---------CcEEEE
Confidence 3444433 4556666788999999876 43 2333322 2234667899999987654332 345556
Q ss_pred EcCCCC-----ccccEEcccCCCceeccccCCCCCe-EEEEeccCCCCCCCccEEEEEEecCCCceeeeEEec-----CC
Q 004735 227 ALNGQN-----IQEPKVLVSGSDFYAFPRMDPRGER-MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-----GF 295 (732)
Q Consensus 227 d~~~~~-----~~~~~~lt~~~~~~~~p~~SPDG~~-la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~-----~~ 295 (732)
++.+.. ....+.+...........|+|++.. |+-.+ . ...|.++|+. +|+. +..+. +.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s-~-------D~~i~~wd~~-~~~~--~~~~~~~~~~~h 204 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS-G-------DQTCVLWDVT-TGQR--ISIFGSEFPSGH 204 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC-T-------TSCEEEECTT-TCCE--EEEECCCSSSSC
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEEC-C-------CCcEEEEEcC-CCcE--EEEeecccCCCC
Confidence 665421 0001223333445566789997654 54333 2 2338888988 6654 33331 22
Q ss_pred CCCccccCcCceeCC-CCcEEEEEeccCCeeeEEEEeccC-Ce-EEEecccccccCCCceeecccceeeeeecCCCCEEE
Q 004735 296 DPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESN-NE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 372 (732)
Q Consensus 296 ~~~~~~~~~~~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~-g~-~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~ 372 (732)
. ..+....|++ |++++++... .+. |.++|+.. ++ .+.+......+.. +.|.+ +++. +
T Consensus 205 ~----~~v~~~~~~~~~~~~l~sgs~-D~~--v~~wd~~~~~~~~~~~~~h~~~v~~---------v~~~p---~~~~-l 264 (380)
T 3iz6_a 205 T----ADVLSLSINSLNANMFISGSC-DTT--VRLWDLRITSRAVRTYHGHEGDINS---------VKFFP---DGQR-F 264 (380)
T ss_dssp C----SCEEEEEECSSSCCEEEEEET-TSC--EEEEETTTTCCCCEEECCCSSCCCE---------EEECT---TSSE-E
T ss_pred c----cCeEEEEeecCCCCEEEEEEC-CCe--EEEEECCCCCcceEEECCcCCCeEE---------EEEec---CCCe-E
Confidence 2 3455667866 6666655554 454 44556642 22 3333322222323 33432 5554 4
Q ss_pred EEEEECCEEEEEEEECCCCceEEe-ccCC-------CceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 373 CSYRQNGRSYLGILDDFGHSLSLL-DIPF-------TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 373 ~~s~~~g~~~ly~~~~~~~~~~~l-t~~~-------~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
++...++.-.|| |+.+++.... .... ..+..+ ..+++.+++.++.. ..++++|+..++.
T Consensus 265 ~s~s~D~~i~lw--d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~vwd~~~~~~ 332 (380)
T 3iz6_a 265 GTGSDDGTCRLF--DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN---GDCYVWDTLLAEM 332 (380)
T ss_dssp EEECSSSCEEEE--ETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT---SCEEEEETTTCCE
T ss_pred EEEcCCCeEEEE--ECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC---CCEEEEECCCCce
Confidence 555566765565 6766654332 2211 113444 34455566555432 4688888877653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00017 Score=81.07 Aligned_cols=230 Identities=14% Similarity=0.116 Sum_probs=140.5
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
-|+|+. ...|.++++++ .....+.+-.+ -.......|+++++.|+++... ...|++++++++.
T Consensus 8 ~Ll~s~--~~~I~~i~l~~--~~~~~~~~~~~--~~~~~~l~~d~~~~~lywtD~~--------~~~I~r~~~~g~~--- 70 (628)
T 4a0p_A 8 FLLFSR--RADIRRISLET--NNNNVAIPLTG--VKEASALDFDVTDNRIYWTDIS--------LKTISRAFMNGSA--- 70 (628)
T ss_dssp EEEEEE--TTEEEEEESSC--TTCEEECCCCS--CSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCS---
T ss_pred EEEEEe--CCcEEEEECCC--CCcceEEEcCC--CCceEEEEEECCCCEEEEEECC--------CCeEEEEECCCCC---
Confidence 467774 55799999986 44443332210 1123456799988886665332 2689999999876
Q ss_pred cEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-
Q 004735 236 PKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 313 (732)
Q Consensus 236 ~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~- 313 (732)
.+.+. .+.....+.++.+.++.|+|+.. ....|.+++++ ++.. ..++...- ..+..++..|...
T Consensus 71 ~~~v~~~g~~~P~GlAvD~~~~~LY~tD~-------~~~~I~v~~~d-G~~~--~~l~~~~l----~~P~~iavdp~~G~ 136 (628)
T 4a0p_A 71 LEHVVEFGLDYPEGMAVDWLGKNLYWADT-------GTNRIEVSKLD-GQHR--QVLVWKDL----DSPRALALDPAEGF 136 (628)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETT-STTC--EEEECSSC----CCEEEEEEETTTTE
T ss_pred cEEEEeCCCCCcceEEEEeCCCEEEEEEC-------CCCEEEEEecC-CCcE--EEEEeCCC----CCcccEEEccCCCe
Confidence 55443 33333456678888889988763 24569999987 3322 22332222 3456778888544
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
||| ++. .....|+++++++...+.+... ..|- ..+.+-+ +++.|||+.. +...|++++++++..
T Consensus 137 lY~-tD~-g~~~~I~r~~~dG~~~~~l~~~------~~~P---~GlalD~---~~~~LY~aD~--~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 137 MYW-TEW-GGKPKIDRAAMDGSERTTLVPN------VGRA---NGLTIDY---AKRRLYWTDL--DTNLIESSNMLGLNR 200 (628)
T ss_dssp EEE-EEC-SSSCEEEEEETTSCSCEEEECS------CSSE---EEEEEET---TTTEEEEEET--TTTEEEEEETTSCSC
T ss_pred EEE-eCC-CCCCEEEEEeCCCCceEEEECC------CCCc---ceEEEcc---ccCEEEEEEC--CCCEEEEEcCCCCce
Confidence 665 454 3356899999988777666531 1221 1233322 5788998764 345789999988776
Q ss_pred EEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 394 SLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 394 ~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.+.........+...++.+++.-. ....|+++|..+|+
T Consensus 201 ~v~~~~l~~P~glav~~~~ly~tD~---~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 201 EVIADDLPHPFGLTQYQDYIYWTDW---SRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEECCSCEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred EEeeccCCCceEEEEECCEEEEecC---CCCEEEEEECCCCC
Confidence 5554433344455445566655442 33579999976665
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.9e-05 Score=75.87 Aligned_cols=243 Identities=12% Similarity=0.072 Sum_probs=126.2
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE--CCEEEEEeCC-CCe
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYK-DQR 166 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~--~~~i~f~~~~-~~~ 166 (732)
.+.+++++|.+.+|+.+... ++ |.+++.. | +....+......... ......++++ ++.+++.... ++.
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~---~~--i~~~d~~-g-~~~~~~~~~~~~~~~--~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNN---HR--IQIFDKE-G-RFKFQFGECGKRDSQ--LLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGG---TE--EEEECTT-S-CEEEEECCBSSSTTC--BSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCceEEECCCCCEEEEECCC---CE--EEEECCC-C-cEEEEecccCCCccc--ccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 46678888844677776532 33 5555554 2 322222111000000 0112234442 4577777643 678
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc--CCC
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSD 244 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--~~~ 244 (732)
|++++.++ ...+.+.... .......+++|+|+ +++... . ...|++++.++.. ...+.. ...
T Consensus 102 i~~~d~~g--~~~~~~~~~~---~~~~~~i~~~~~g~-l~v~~~-~-------~~~i~~~~~~g~~---~~~~~~~~~~~ 164 (286)
T 1q7f_A 102 IQIYNQYG--QFVRKFGATI---LQHPRGVTVDNKGR-IIVVEC-K-------VMRVIIFDQNGNV---LHKFGCSKHLE 164 (286)
T ss_dssp EEEECTTS--CEEEEECTTT---CSCEEEEEECTTSC-EEEEET-T-------TTEEEEECTTSCE---EEEEECTTTCS
T ss_pred EEEECCCC--cEEEEecCcc---CCCceEEEEeCCCC-EEEEEC-C-------CCEEEEEcCCCCE---EEEeCCCCccC
Confidence 99999653 3333443221 12346678999998 333322 1 2589999977554 444432 223
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCe
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF 324 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~ 324 (732)
.....+++|||+ |++... ....|+++|.+ |+. +..+...... ..+..+++++||++++.... +.
T Consensus 165 ~p~~i~~~~~g~-l~v~~~-------~~~~i~~~~~~--g~~--~~~~~~~g~~--~~p~~i~~d~~G~l~v~~~~--~~ 228 (286)
T 1q7f_A 165 FPNGVVVNDKQE-IFISDN-------RAHCVKVFNYE--GQY--LRQIGGEGIT--NYPIGVGINSNGEILIADNH--NN 228 (286)
T ss_dssp SEEEEEECSSSE-EEEEEG-------GGTEEEEEETT--CCE--EEEESCTTTS--CSEEEEEECTTCCEEEEECS--SS
T ss_pred CcEEEEECCCCC-EEEEEC-------CCCEEEEEcCC--CCE--EEEEccCCcc--CCCcEEEECCCCCEEEEeCC--CC
Confidence 345678999987 554432 23459999865 433 2333322100 34567789999986655432 22
Q ss_pred eeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 325 WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 325 ~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
..|.+++.++...+.+.... .... ...+.+. .++.+|++ +.++.-.+|.+
T Consensus 229 ~~i~~~~~~g~~~~~~~~~~-~~~~------~~~i~~~----~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 229 FNLTIFTQDGQLISALESKV-KHAQ------CFDVALM----DDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp CEEEEECTTSCEEEEEEESS-CCSC------EEEEEEE----TTTEEEEE-ETTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEcccC-CCCc------ceeEEEC----CCCcEEEE-CCCCeEEEEEc
Confidence 36888887665555554221 0000 1233444 34467766 44555555543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.8e-05 Score=82.53 Aligned_cols=261 Identities=9% Similarity=0.048 Sum_probs=128.6
Q ss_pred CCccCceEEcC-CCcEEEEeecCCC----CCceEEEEcCCCCCCCCccc-CCCCCccccc-ccccCCceeEEECCEEEEE
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTE----AGRGVLVKEPAKAGDEPSDI-TPKEYAVRTT-AQEYGGGAFRIFGDTVIFS 160 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~~l-~~~~~~~~~~-~~~~g~~~~~~~~~~i~f~ 160 (732)
+..+ ++.++| |+.+|........ .+.-.+...+..++.....+ ++.. .+.. .....+..+++++.++++.
T Consensus 118 G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~--~r~~~g~~P~~~~~spDGk~lyV~ 194 (426)
T 3c75_H 118 GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA--PRFLVGTYQWMNALTPDNKNLLFY 194 (426)
T ss_dssp CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC--CCCCBSCCGGGSEECTTSSEEEEE
T ss_pred CCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc--cccccCCCcceEEEcCCCCEEEEE
Confidence 4567 899999 8888887641100 01114556666644211222 1100 0000 0011123344455577777
Q ss_pred eCC-CCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE
Q 004735 161 NYK-DQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV 238 (732)
Q Consensus 161 ~~~-~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 238 (732)
+.. .+.|.++|+++ .+. ..+.-. +. ....|+|++.++..... ..+..+++.+++ +..
T Consensus 195 n~~~~~~VsVID~~t--~kvv~~I~v~----g~----~~~~p~g~~~~v~~~~d--------G~~~~V~~~~~~---v~~ 253 (426)
T 3c75_H 195 QFSPAPAVGVVDLEG--KTFDRMLDVP----DC----YHIFPASPTVFYMNCRD--------GSLARVDFADGE---TKV 253 (426)
T ss_dssp ECSSSCEEEEEETTT--TEEEEEEECC----SE----EEEEEEETTEEEEEETT--------SSEEEEECCTTC---CEE
T ss_pred ecCCCCeEEEEECCC--CeEEEEEEcC----Cc----eeeccCCCcEEEEEcCC--------CCEEEEECCCCc---EEE
Confidence 654 57899999987 433 333322 11 12345554333322211 234445554444 321
Q ss_pred -----cccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEec---CC--CCCcc-ccCcCc
Q 004735 239 -----LVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA---GF--DPTIV-ESPTEP 306 (732)
Q Consensus 239 -----lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~---~~--~~~~~-~~~~~~ 306 (732)
+.-+. .....+.++|||++++|... ...++++|+. +++..-...+. .. ...|. .....+
T Consensus 254 ~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--------~g~V~ViD~~-~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 254 TNTEVFHTEDELLINHPAFSLRSGRLVWPTY--------TGKIFQADLT-AEGATFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp EECCCCSCTTSCBCSCCEECTTTCEEEEEBT--------TSEEEEEEEC-SSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred EeeeeeccCCCceeeEeeecCCCCEEEEEeC--------CCcEEEEecc-CCceEEeeeeeeccccccccccccCCceee
Confidence 11111 11234567999999998862 2369999997 44432111110 00 00000 112236
Q ss_pred eeCCCCc-EEEEEec-c-----CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 307 KWSSKGE-LFFVTDR-K-----NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 307 ~wspDg~-l~~~~~~-~-----~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
.++|||+ +|+.... . .+...|..+|..+.+...-.+.. ... ..+.|.+ |++.++++.+. +
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P-----~gia~sp---Dg~~~lyv~n~-~ 391 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEI-----DSINVSQ---DAEPLLYALSA-G 391 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEE-----CEEEECC---SSSCEEEEEET-T
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----CCc-----CeEEEcc---CCCEEEEEEcC-C
Confidence 8899988 5554322 0 12457999999987654322211 111 2234443 67734455542 2
Q ss_pred EEEEEEEECCCCceE
Q 004735 380 RSYLGILDDFGHSLS 394 (732)
Q Consensus 380 ~~~ly~~~~~~~~~~ 394 (732)
...|.++|+.++++.
T Consensus 392 s~~VsVID~~t~kvv 406 (426)
T 3c75_H 392 TQTLHIYDAATGEEL 406 (426)
T ss_dssp TTEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCCEE
Confidence 246888899888754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00012 Score=75.55 Aligned_cols=156 Identities=8% Similarity=-0.039 Sum_probs=90.3
Q ss_pred CceeEEECC-EEEEEeCCCCeEEEEeCCCCCCC-----c---eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCC
Q 004735 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS-----P---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL 217 (732)
Q Consensus 147 ~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~-----~---~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 217 (732)
+.+..++++ .++++...++.|.++++.. .. . ..+... .......+|+|||++|+....+
T Consensus 61 v~~v~~sp~~~~las~s~D~~v~iw~~~~--~~~~~~~~~~~~~~~~h----~~~V~~v~~sp~g~~las~s~D------ 128 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEE--SADRTFEMDLLAIIEGH----ENEVKGVAWSNDGYYLATCSRD------ 128 (330)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC---------CCCEEEEEEC--------CEEEEEECTTSCEEEEEETT------
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEccc--CcCccccceeEEEEcCC----CCcEEEEEECCCCCEEEEEeCC------
Confidence 344555433 4555666778888888853 21 1 122222 3345678899999987665542
Q ss_pred CceeEEEEEEcCC-CCc-cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCC
Q 004735 218 NSTTEIVAIALNG-QNI-QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF 295 (732)
Q Consensus 218 ~~~~~l~~~d~~~-~~~-~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~ 295 (732)
..|.++|+.. +.. .....+......+....|+|||+.|+-.+.+ ..|.++|+. ++....+..+.+.
T Consensus 129 ---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D--------~~i~iW~~~-~~~~~~~~~~~~h 196 (330)
T 2hes_X 129 ---KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD--------DTVRIWKDY-DDDWECVAVLNGH 196 (330)
T ss_dssp ---SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT--------SCEEEEEEE-TTEEEEEEEECCC
T ss_pred ---CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC--------CeEEEEECC-CCCeeEEEEccCC
Confidence 4677778743 220 0012333444556778999999988766632 237777876 5543335556665
Q ss_pred CCCccccCcCceeCCC--CcEEEEEeccCCeeeEEEEe
Q 004735 296 DPTIVESPTEPKWSSK--GELFFVTDRKNGFWNLHKWI 331 (732)
Q Consensus 296 ~~~~~~~~~~~~wspD--g~l~~~~~~~~g~~~l~~~d 331 (732)
. ..+..+.|+|+ +.++++... .+.-+||.+.
T Consensus 197 ~----~~v~~~~~~~~~~~~~l~s~s~-D~~v~iw~~~ 229 (330)
T 2hes_X 197 E----GTVWSSDFDKTEGVFRLCSGSD-DSTVRVWKYM 229 (330)
T ss_dssp S----SCEEEEEECCSSSSCEEEEEET-TSCEEEEEEE
T ss_pred C----CcEEEEEecCCCCeeEEEEEeC-CCeEEEEEec
Confidence 4 56778899999 444445444 5666666543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.2e-05 Score=74.38 Aligned_cols=197 Identities=12% Similarity=0.024 Sum_probs=106.1
Q ss_pred eEEEC-CEEEE-EeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 150 FRIFG-DTVIF-SNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 150 ~~~~~-~~i~f-~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
++++. +.+++ ....++.|++++..+ +..+.+.... ........++|||+ |++. ... ..|++++
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~--~~~~~~~~~~---~~~p~~i~~~~~g~-l~v~-~~~--------~~i~~~d 93 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGS--TGTTVLPFNG---LYQPQGLAVDGAGT-VYVT-DFN--------NRVVTLA 93 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-------EECCCCS---CCSCCCEEECTTCC-EEEE-ETT--------TEEEEEC
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCC--cccceEeeCC---cCCcceeEECCCCC-EEEE-cCC--------CEEEEEe
Confidence 34443 35666 545667899999875 4444333221 12235678999998 3443 321 5899999
Q ss_pred cCCCCccccEEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 228 LNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 228 ~~~~~~~~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
.+++. ...+.. +........++|||+ |++.... ...|++++.. +... ........ ..+..+
T Consensus 94 ~~~~~---~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~-------~~~i~~~~~~-~~~~--~~~~~~~~----~~p~~i 155 (270)
T 1rwi_B 94 AGSNN---QTVLPFDGLNYPEGLAVDTQGA-VYVADRG-------NNRVVKLAAG-SKTQ--TVLPFTGL----NDPDGV 155 (270)
T ss_dssp TTCSC---CEECCCCSCSSEEEEEECTTCC-EEEEEGG-------GTEEEEECTT-CCSC--EECCCCSC----CSCCCE
T ss_pred CCCce---EeeeecCCcCCCcceEECCCCC-EEEEECC-------CCEEEEEECC-Ccee--EeeccccC----CCceeE
Confidence 98776 554432 223445678899997 6554321 3458888543 2221 11111111 345678
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
.+++||++|+.. . +...|++++++++......... ... ...+.+. .++.+|++...+ ..|+++
T Consensus 156 ~~~~~g~l~v~~-~--~~~~i~~~~~~~~~~~~~~~~~--~~~------p~~i~~d----~~g~l~v~~~~~--~~v~~~ 218 (270)
T 1rwi_B 156 AVDNSGNVYVTD-T--DNNRVVKLEAESNNQVVLPFTD--ITA------PWGIAVD----EAGTVYVTEHNT--NQVVKL 218 (270)
T ss_dssp EECTTCCEEEEE-G--GGTEEEEECTTTCCEEECCCSS--CCS------EEEEEEC----TTCCEEEEETTT--SCEEEE
T ss_pred EEeCCCCEEEEE-C--CCCEEEEEecCCCceEeecccC--CCC------ceEEEEC----CCCCEEEEECCC--CcEEEE
Confidence 999999865543 3 2346889998876654432111 111 1223332 334566654322 357788
Q ss_pred ECCCCceEEe
Q 004735 387 DDFGHSLSLL 396 (732)
Q Consensus 387 ~~~~~~~~~l 396 (732)
+.++.....+
T Consensus 219 ~~~~~~~~~~ 228 (270)
T 1rwi_B 219 LAGSTTSTVL 228 (270)
T ss_dssp CTTCSCCEEC
T ss_pred cCCCCcceee
Confidence 8877655443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=7.3e-05 Score=76.24 Aligned_cols=200 Identities=8% Similarity=-0.036 Sum_probs=110.7
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-CEEEEEeCCC--C
Q 004735 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKD--Q 165 (732)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-~~i~f~~~~~--~ 165 (732)
..+++++|+|.+.+||++... + .|++++++ ++.......+ .....++++. +++++..... .
T Consensus 32 ~~pegia~~~~g~lyv~d~~~---~--~I~~~d~~--g~~~~~~~~~---------~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEV---G--EIVSITPD--GNQQIHATVE---------GKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTT---T--EEEEECTT--CCEEEEEECS---------SEEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCC---C--eEEEECCC--CceEEEEeCC---------CCceeEEEcCCCcEEEEeccCCcc
Confidence 467899999855699998632 3 46777766 2322222111 0012234443 3566665432 2
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEe-eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc-----
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSY-ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL----- 239 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~-~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l----- 239 (732)
.|++++..+ ++.+.+.... ..++ ..++..+++ .+ |+.+.. ...||++|.++++ .+..
T Consensus 96 ~v~~~d~~~--g~~~~~~~~~---~~~~~~g~~~~~~~-~~-~v~d~~-------~g~i~~~d~~~~~---~~v~~~~~~ 158 (306)
T 2p4o_A 96 PVVSLVKSD--GTVETLLTLP---DAIFLNGITPLSDT-QY-LTADSY-------RGAIWLIDVVQPS---GSIWLEHPM 158 (306)
T ss_dssp EEEEEECTT--SCEEEEEECT---TCSCEEEEEESSSS-EE-EEEETT-------TTEEEEEETTTTE---EEEEEECGG
T ss_pred eEEEEcCCC--CeEEEEEeCC---CccccCcccccCCC-cE-EEEECC-------CCeEEEEeCCCCc---EeEEEECCc
Confidence 588888776 6665554321 1122 233344444 43 444321 2689999987653 2111
Q ss_pred ----c--cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 240 ----V--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 240 ----t--~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
. .+....++ +||||++|++... ...+|++++++.+|++.....+... ..+..++.++||+
T Consensus 159 ~~~~~~~~~~~~png--is~dg~~lyv~d~-------~~~~I~~~~~~~~g~~~~~~~~~~~-----~~P~gi~vd~dG~ 224 (306)
T 2p4o_A 159 LARSNSESVFPAANG--LKRFGNFLYVSNT-------EKMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGN 224 (306)
T ss_dssp GSCSSTTCCSCSEEE--EEEETTEEEEEET-------TTTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCC
T ss_pred cccccccCCCCcCCC--cCcCCCEEEEEeC-------CCCEEEEEEeCCCCCCCccEEEecc-----CCCCCeEECCCCC
Confidence 0 11111223 3999998877652 2456999999733655444443322 2356889999998
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEE
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
+ |+++. +..+|.+++++ |+...
T Consensus 225 l-~va~~--~~~~V~~~~~~-G~~~~ 246 (306)
T 2p4o_A 225 L-YGATH--IYNSVVRIAPD-RSTTI 246 (306)
T ss_dssp E-EEECB--TTCCEEEECTT-CCEEE
T ss_pred E-EEEeC--CCCeEEEECCC-CCEEE
Confidence 6 45554 34568899986 54433
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-05 Score=77.72 Aligned_cols=235 Identities=13% Similarity=0.068 Sum_probs=131.0
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeE
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l 167 (732)
..+..+.|+| ++.++... .++...+|........+...... .+.....++.++++.+ ++...++.|
T Consensus 60 ~~v~~~~~~~~~~~l~~~~----~dg~i~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~l-~~~~~d~~i 126 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGG----KDTMINGVPLFATSGEDPLYTLI--------GHQGNVCSLSFQDGVV-ISGSWDKTA 126 (313)
T ss_dssp SCEEEEEEETTTTEEEEEE----TTSCEEEEETTCCTTSCC-CEEC--------CCSSCEEEEEEETTEE-EEEETTSEE
T ss_pred ccEEEEEECCCCCEEEEec----CCCeEEEEEeeecCCCCcccchh--------hcccCEEEEEecCCEE-EEEeCCCCE
Confidence 3567889999 66555433 24666677664431111111111 1222334556665544 455567889
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-CCCc
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDF 245 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~~~~ 245 (732)
.++|.. .....+... ........|+| +++.++....+ ..|.++|... . ...+.. ....
T Consensus 127 ~~~d~~---~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~-~---~~~~~~~~~~~ 186 (313)
T 3odt_A 127 KVWKEG---SLVYNLQAH----NASVWDAKVVSFSENKFLTASAD---------KTIKLWQNDK-V---IKTFSGIHNDV 186 (313)
T ss_dssp EEEETT---EEEEEEECC----SSCEEEEEEEETTTTEEEEEETT---------SCEEEEETTE-E---EEEECSSCSSC
T ss_pred EEEcCC---cEEEecccC----CCceeEEEEccCCCCEEEEEECC---------CCEEEEecCc-e---EEEEeccCccc
Confidence 999832 333344433 23345566777 88886655442 4677778432 2 333333 4455
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCee
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~ 325 (732)
.....|+|||+ |+... ....|.++|+. +++. +..+.... ..+..+.|+|||+++ .... .|
T Consensus 187 i~~~~~~~~~~-~~~~~--------~dg~i~i~d~~-~~~~--~~~~~~~~----~~i~~~~~~~~~~l~-~~~~-dg-- 246 (313)
T 3odt_A 187 VRHLAVVDDGH-FISCS--------NDGLIKLVDMH-TGDV--LRTYEGHE----SFVYCIKLLPNGDIV-SCGE-DR-- 246 (313)
T ss_dssp EEEEEEEETTE-EEEEE--------TTSEEEEEETT-TCCE--EEEEECCS----SCEEEEEECTTSCEE-EEET-TS--
T ss_pred EEEEEEcCCCe-EEEcc--------CCCeEEEEECC-chhh--hhhhhcCC----ceEEEEEEecCCCEE-EEec-CC--
Confidence 67789999998 65444 23459999998 6765 44455444 567789999999644 3333 33
Q ss_pred eEEEEeccCCeEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 326 NLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
.|..+|+.+++....... ...+.. +.|.+ ++. ++ +...+|.-.|| ++.+++
T Consensus 247 ~v~iwd~~~~~~~~~~~~~~~~i~~---------~~~~~---~~~-~~-~~~~dg~i~iw--~~~~~~ 298 (313)
T 3odt_A 247 TVRIWSKENGSLKQVITLPAISIWS---------VDCMS---NGD-II-VGSSDNLVRIF--SQEKSR 298 (313)
T ss_dssp EEEEECTTTCCEEEEEECSSSCEEE---------EEECT---TSC-EE-EEETTSCEEEE--ESCGGG
T ss_pred EEEEEECCCCceeEEEeccCceEEE---------EEEcc---CCC-EE-EEeCCCcEEEE--eCCCCc
Confidence 477778888765544322 212222 33432 554 43 45556655555 555554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-05 Score=89.90 Aligned_cols=207 Identities=10% Similarity=0.084 Sum_probs=122.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCC---CCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAG---DEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~ 164 (732)
..+.++.+++ ++.|||++... + .|++.+..+. +....++... +....+.++.+.++.|+|++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~---~--~I~~~~l~g~~~~~~~~~vi~~~------l~~P~GLAvD~~~~~LY~tD~~~ 492 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQ---R--MICSTQLDRAHGVSSYDTVISRD------IQAPDGLAVDWIHSNIYWTDSVL 492 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTT---T--EEEEEEC--------CEEEECSS------CSCCCEEEEETTTTEEEEEETTT
T ss_pred CceEEEeecccCCeeEEeeccc---e--eEEEEeccCCCCCcceeEEEecC------CCCcceeeeeecCCcEEEEecCC
Confidence 4567889998 89999998732 3 4555554421 0122222211 11222333444477999999888
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-CC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GS 243 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~~ 243 (732)
+.|+++++++ ...+.|.... .....+++++|.+.+|+++.... ...|+++++++.. .+.+.. +-
T Consensus 493 ~~I~v~~ldG--~~~~~l~~~~---l~~P~gIaVDp~~g~LYwtD~g~-------~~~I~~~~~dG~~---~~~lv~~~l 557 (791)
T 3m0c_C 493 GTVSVADTKG--VKRKTLFREN---GSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVD---IYSLVTENI 557 (791)
T ss_dssp TEEEEEETTS--SSEEEEEECT---TCCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCC---EEEEECSSC
T ss_pred CeEEEEeCCC--CeEEEEEeCC---CCCcceEEEecCCCCEEEecCCC-------CCeEEEEecCCCc---eEEEEeCCC
Confidence 8999999986 5555554321 12346778999988876664321 2589999999876 555543 33
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
..-.+.+++|++++|||+.. ....|++++++ +... ..++.... .+ .....+. .++. ||| ++.
T Consensus 558 ~~P~GLavD~~~~~LYwaD~-------~~~~I~~~d~d-G~~~--~~v~~~~~-~l-~~P~gla--v~~~~lYw-tD~-- 620 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDS-------KLHSISSIDVN-GGNR--KTILEDEK-RL-AHPFSLA--VFEDKVFW-TDI-- 620 (791)
T ss_dssp SCEEEEEEETTTTEEEEEET-------TTTEEEEEETT-SCSC--EEEEECTT-TT-SSEEEEE--EETTEEEE-EET--
T ss_pred CCceEEEEecCCCeEEEEeC-------CCCcEEEEecC-CCce--EEEecCCC-cc-CCCCEEE--EeCCEEEE-EEC--
Confidence 44566789999999988862 24569999987 3322 22333221 00 1122233 3444 554 444
Q ss_pred CeeeEEEEeccCCeEE
Q 004735 323 GFWNLHKWIESNNEVL 338 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~ 338 (732)
+...|++++..+|+.+
T Consensus 621 ~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 621 INEAIFSANRLTGSDV 636 (791)
T ss_dssp TTTEEEEEETTTCCCC
T ss_pred CCCEEEEEeCCCCcce
Confidence 4567888887666433
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-05 Score=93.37 Aligned_cols=231 Identities=6% Similarity=-0.045 Sum_probs=127.2
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCce---ecCCCCCCCCeEeeceeecCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPL---PITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~---~lt~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.+++...++.|.++++.+ +..+ .+... ........|+|+ |+.|+....+ ..|.++|+.++
T Consensus 23 ~latg~~dg~I~vwd~~~--~~~~~~~~l~~h----~~~V~~l~~s~~~~~~~l~s~s~D---------g~I~vwd~~~~ 87 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEG--ETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYD---------GKVLIWKEENG 87 (753)
T ss_dssp CEEEEETTTEEEEEEEET--TEEEEEEEECCC----SSCEEEEEECCTTSCSEEEEEETT---------SCEEEEEEETT
T ss_pred eEEEEECCCcEEEEecCC--CCCccceeccCC----cCceEEEEecCCCCCCEEEEEeCC---------CeEEEEECCCC
Confidence 344555678888888864 2222 23322 334567789998 8886665542 46788888877
Q ss_pred CccccEEcccCCCceeccccCCC--CCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 232 NIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 232 ~~~~~~~lt~~~~~~~~p~~SPD--G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
+......+......+....|||| |+.|+..+ ....|.++|+. ++.......+.+.. ..+..+.|+
T Consensus 88 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--------~dg~I~vwdl~-~~~~~~~~~~~~~~----~~v~~l~~~ 154 (753)
T 3jro_A 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--------SDGKVSVVEFK-ENGTTSPIIIDAHA----IGVNSASWA 154 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--------TTSEEEEEECC-SSSCCCCEEEECCS----SCEEEEEEC
T ss_pred cccccccccCCCCCeEEEEECCCCCCCEEEEEe--------CCCcEEEEEee-cCCCcceeEeecCC----CceEEEEec
Confidence 41113334444556778899999 99887766 23459999998 55332233444443 567788999
Q ss_pred C-------------CCcEEEEEeccCCeeeEEEEeccCCe--EEE---ecccccccCCCceeecccceeeeeecCCC--C
Q 004735 310 S-------------KGELFFVTDRKNGFWNLHKWIESNNE--VLA---IYSLDAEFSRPLWVFGINSYEIIQSHGEK--N 369 (732)
Q Consensus 310 p-------------Dg~l~~~~~~~~g~~~l~~~d~~~g~--~~~---l~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~ 369 (732)
| ||+++++... .|.-.+| |..++. ... +......+... .|.+ ++ +
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~-dg~I~iw--d~~~~~~~~~~~~~~~~h~~~V~~l---------~~sp---~~~~~ 219 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGA-DNLVKIW--KYNSDAQTYVLESTLEGHSDWVRDV---------AWSP---TVLLR 219 (753)
T ss_dssp CCC---------CGGGCCEEEEET-TSCEEEE--EEETTTTEEEEEEEECCCSSCEEEE---------EECC---CCSSS
T ss_pred CcccccccccccCCCCCEEEEEEC-CCeEEEE--eccCCcccceeeeeecCCCCcEEEE---------Eecc---CCCCC
Confidence 9 5774444444 4554444 544432 122 21222222223 3332 42 5
Q ss_pred EEEEEEEECCEEEEEEEECCCCce-EEec---cCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 370 LIACSYRQNGRSYLGILDDFGHSL-SLLD---IPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 370 ~l~~~s~~~g~~~ly~~~~~~~~~-~~lt---~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
.++++...+|.-.||-+....+.. ..+. .....+..+ ..+++.+++.++. + ..|+++++.+
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-D--g~I~vwd~~~ 285 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-D--NKVTLWKENL 285 (753)
T ss_dssp EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS-S--SCEECCBCCS
T ss_pred CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC-C--CEEEEEecCC
Confidence 667777778877777554322111 1111 123345445 3445555555543 2 2466666654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.4e-05 Score=78.56 Aligned_cols=148 Identities=7% Similarity=-0.040 Sum_probs=89.1
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
..+++...++.|.++|+.+ ++...+.... ........+|+|||+.++.... . ..|.++|+.+++.
T Consensus 140 ~~l~s~s~dg~i~~wd~~~--~~~~~~~~~~--~~~~i~~~~~~pdg~~lasg~~-d--------g~i~iwd~~~~~~-- 204 (343)
T 3lrv_A 140 EYFIWADNRGTIGFQSYED--DSQYIVHSAK--SDVEYSSGVLHKDSLLLALYSP-D--------GILDVYNLSSPDQ-- 204 (343)
T ss_dssp CEEEEEETTCCEEEEESSS--SCEEEEECCC--SSCCCCEEEECTTSCEEEEECT-T--------SCEEEEESSCTTS--
T ss_pred CEEEEEeCCCcEEEEECCC--CcEEEEEecC--CCCceEEEEECCCCCEEEEEcC-C--------CEEEEEECCCCCC--
Confidence 4455556788899999987 5554333221 1223567789999997554433 1 5788899998761
Q ss_pred c-EEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce-eeeEEecCCCCCccccCc--CceeCC
Q 004735 236 P-KVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPT--EPKWSS 310 (732)
Q Consensus 236 ~-~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~-~~~~~~~~~~~~~~~~~~--~~~wsp 310 (732)
. ..+.. ....+....|||||++|+..+ +. .|.++|+. .++. .....+.... ..+. .+.|+|
T Consensus 205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~--------~v~iwd~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 270 (343)
T 3lrv_A 205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ--------TVVCFDLR-KDVGTLAYPTYTIPE----FKTGTVTYDIDD 270 (343)
T ss_dssp CCEECCCCTTSCEEEEEECTTSSEEEEEE-SS--------BEEEEETT-SSTTCBSSCCCBC---------CCEEEEECT
T ss_pred CccEEeccCCCCEEEEEEeCCCCEEEEEe-CC--------eEEEEEcC-CCCcceeeccccccc----ccccceEEEECC
Confidence 2 34444 355677889999999988766 22 49999998 5532 1121111111 1222 389999
Q ss_pred CCc-EEEEEeccCCeeeEEEEecc
Q 004735 311 KGE-LFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 311 Dg~-l~~~~~~~~g~~~l~~~d~~ 333 (732)
||+ |+..+.. .+..+||.++..
T Consensus 271 ~g~~l~~~s~~-d~~i~v~~~~~~ 293 (343)
T 3lrv_A 271 SGKNMIAYSNE-SNSLTIYKFDKK 293 (343)
T ss_dssp TSSEEEEEETT-TTEEEEEEECTT
T ss_pred CCCEEEEecCC-CCcEEEEEEccc
Confidence 999 4433332 355566655433
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.2e-05 Score=75.37 Aligned_cols=203 Identities=10% Similarity=0.045 Sum_probs=118.9
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~ 169 (732)
.+.++.++|.+.+|...... +...|...+..+| +...-++-+ ..+.+..+++++++++.....++.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg-~v~~~i~l~-------~~~fgeGi~~~g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLY---GRSSVRQVALQTG-KVENIHKMD-------DSYFGEGLTLLNEKLYQVVWLKNIGFI 90 (266)
T ss_dssp CEEEEEECSTTEEEEEECST---TTCEEEEEETTTC-CEEEEEECC-------TTCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred CcccEEEeCCCeEEEECCCC---CCCEEEEEECCCC-CEEEEEecC-------CCcceEEEEEeCCEEEEEEecCCEEEE
Confidence 34689999634666655422 3335777777765 322221111 011223467788899999988899999
Q ss_pred EeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC--CC--
Q 004735 170 HSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG--SD-- 244 (732)
Q Consensus 170 ~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~--~~-- 244 (732)
+|.++ .+ ...+..+ .. ....+++||++++ +++ . .+.|+++|.++.+. .+.+.-+ ..
T Consensus 91 iD~~t--~~v~~~i~~g-~~-----~g~glt~Dg~~l~-vs~-g-------s~~l~viD~~t~~v--~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 91 YDRRT--LSNIKNFTHQ-MK-----DGWGLATDGKILY-GSD-G-------TSILYEIDPHTFKL--IKKHNVKYNGHRV 151 (266)
T ss_dssp EETTT--TEEEEEEECC-SS-----SCCEEEECSSSEE-EEC-S-------SSEEEEECTTTCCE--EEEEECEETTEEC
T ss_pred EECCC--CcEEEEEECC-CC-----CeEEEEECCCEEE-EEC-C-------CCeEEEEECCCCcE--EEEEEECCCCccc
Confidence 99987 43 3334322 01 1223778999854 544 2 26899999998762 3333321 11
Q ss_pred -ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCC--------CCCccccCcCceeCCCCcEE
Q 004735 245 -FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF--------DPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 245 -~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~wspDg~l~ 315 (732)
..+...|. || +|+ +.. |...+|.++|.+ +|++.....+.+. .+. ...+..++|+|||+.+
T Consensus 152 ~~~nele~~-dg-~ly-vn~------~~~~~V~vID~~-tg~V~~~I~~~g~~~~~~~~~~~~-~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 152 IRLNELEYI-NG-EVW-ANI------WQTDCIARISAK-DGTLLGWILLPNLRKKLIDEGFRD-IDVLNGIAWDQENKRI 220 (266)
T ss_dssp CCEEEEEEE-TT-EEE-EEE------TTSSEEEEEETT-TCCEEEEEECHHHHHHHHHTTCTT-CCCEEEEEEETTTTEE
T ss_pred ccceeEEEE-CC-EEE-Eec------CCCCeEEEEECC-CCcEEEEEECCCcccccccccccc-cCceEEEEEcCCCCEE
Confidence 23345677 76 564 441 234579999998 8887443333211 000 0234578999999966
Q ss_pred EEEeccCCeeeEEEEeccCC
Q 004735 316 FVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g 335 (732)
|++.. .+..|+.+++...
T Consensus 221 fVTgk--~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 221 FVTGK--LWPKLFEIKLHLV 238 (266)
T ss_dssp EEEET--TCSEEEEEEEEEC
T ss_pred EEECC--CCCeEEEEEEecc
Confidence 66664 5667888876543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.2e-05 Score=85.97 Aligned_cols=202 Identities=12% Similarity=0.091 Sum_probs=126.9
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~ 168 (732)
.+.++.+++ ++.+||.+... + .|++.+.+++ ..+.+...+ +....+.++.+.++.|+|++...+.|+
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~---~--~I~r~~~~g~-~~~~v~~~g------~~~P~GlAvD~~~~~LY~tD~~~~~I~ 105 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISL---K--TISRAFMNGS-ALEHVVEFG------LDYPEGMAVDWLGKNLYWADTGTNRIE 105 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTT---T--EEEEEETTSC-SCEEEECSS------CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEEEEEECCCCEEEEEECCC---C--eEEEEECCCC-CcEEEEeCC------CCCcceEEEEeCCCEEEEEECCCCEEE
Confidence 456889999 99999999743 3 4666665522 333333322 111223344445779999988888999
Q ss_pred EEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceec
Q 004735 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAF 248 (732)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~ 248 (732)
++++++ ...+.|.... .....+.+++|....|+++.... ...|+++++++.. .+.+..+-..-.+
T Consensus 106 v~~~dG--~~~~~l~~~~---l~~P~~iavdp~~G~lY~tD~g~-------~~~I~r~~~dG~~---~~~l~~~~~~P~G 170 (628)
T 4a0p_A 106 VSKLDG--QHRQVLVWKD---LDSPRALALDPAEGFMYWTEWGG-------KPKIDRAAMDGSE---RTTLVPNVGRANG 170 (628)
T ss_dssp EEETTS--TTCEEEECSS---CCCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCS---CEEEECSCSSEEE
T ss_pred EEecCC--CcEEEEEeCC---CCCcccEEEccCCCeEEEeCCCC-------CCEEEEEeCCCCc---eEEEECCCCCcce
Confidence 999986 5555554221 22336778999777766654321 2699999999887 6776655555567
Q ss_pred cccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEE
Q 004735 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~ 328 (732)
.++++++++|+|+.. ....|+++|++ ++.. +++...- ..+..++... +.+|++ +. +...|+
T Consensus 171 lalD~~~~~LY~aD~-------~~~~I~~~d~d-G~~~---~v~~~~l----~~P~glav~~-~~ly~t-D~--~~~~I~ 231 (628)
T 4a0p_A 171 LTIDYAKRRLYWTDL-------DTNLIESSNML-GLNR---EVIADDL----PHPFGLTQYQ-DYIYWT-DW--SRRSIE 231 (628)
T ss_dssp EEEETTTTEEEEEET-------TTTEEEEEETT-SCSC---EEEEECC----SCEEEEEEET-TEEEEE-ET--TTTEEE
T ss_pred EEEccccCEEEEEEC-------CCCEEEEEcCC-CCce---EEeeccC----CCceEEEEEC-CEEEEe-cC--CCCEEE
Confidence 899999999988863 23569999987 3332 2333222 2334445433 336554 44 345688
Q ss_pred EEeccCCeE
Q 004735 329 KWIESNNEV 337 (732)
Q Consensus 329 ~~d~~~g~~ 337 (732)
++|..+|+.
T Consensus 232 ~~dk~tg~~ 240 (628)
T 4a0p_A 232 RANKTSGQN 240 (628)
T ss_dssp EEETTTCCS
T ss_pred EEECCCCCc
Confidence 888766643
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00051 Score=70.46 Aligned_cols=235 Identities=9% Similarity=-0.025 Sum_probs=132.0
Q ss_pred CceeEEEC--CEEEEEeCCCCeEEEEeCCCCCCCc------eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCC
Q 004735 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSSP------LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (732)
Q Consensus 147 ~~~~~~~~--~~i~f~~~~~~~l~~~d~~~~~~~~------~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 218 (732)
+.+.++++ ..++++...|+.|.++|+.. .+. +.+... ........|+|||++|+....+
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~--~~~~~~~~~~~l~~h----~~~V~~~~~s~dg~~l~s~~~d------- 107 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTR--DETNYGIPQRALRGH----SHFVSDVVISSDGQFALSGSWD------- 107 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECC--SSSCSEEEEEEECCC----SSCEEEEEECTTSSEEEEEETT-------
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCC--CCcccceeeEEEeCC----CCCEEEEEECCCCCEEEEEccc-------
Confidence 44555553 35777777888898898875 321 122222 3345677899999987655442
Q ss_pred ceeEEEEEEcCCCCccccEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 219 STTEIVAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 219 ~~~~l~~~d~~~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
..|.+++...+. ... ............++|+++.|+..+.+ ..+.++|+. .... ......+..
T Consensus 108 --~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--------~~~~~~d~~-~~~~-~~~~~~~~~- 171 (340)
T 4aow_A 108 --GTLRLWDLTTGT---TTRRFVGHTKDVLSVAFSSDNRQIVSGSRD--------KTIKLWNTL-GVCK-YTVQDESHS- 171 (340)
T ss_dssp --SEEEEEETTTTE---EEEEEECCSSCEEEEEECTTSSCEEEEETT--------SCEEEECTT-SCEE-EEECSSSCS-
T ss_pred --ccceEEeecccc---eeeeecCCCCceeEEEEeecCccceeecCC--------CeEEEEEeC-CCce-EEEEecccc-
Confidence 477888887665 322 22333444556789999988766522 237777765 3221 112222222
Q ss_pred CccccCcCceeCCCCc--EEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEE
Q 004735 298 TIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~--l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 374 (732)
..+....|++++. +++.... .+ .|..+|..+++....... ...+. .+.|.+ +++ ++++
T Consensus 172 ---~~v~~~~~~~~~~~~~~~s~~~-d~--~i~i~d~~~~~~~~~~~~h~~~v~---------~~~~s~---~~~-~l~s 232 (340)
T 4aow_A 172 ---EWVSCVRFSPNSSNPIIVSCGW-DK--LVKVWNLANCKLKTNHIGHTGYLN---------TVTVSP---DGS-LCAS 232 (340)
T ss_dssp ---SCEEEEEECSCSSSCEEEEEET-TS--CEEEEETTTTEEEEEECCCSSCEE---------EEEECT---TSS-EEEE
T ss_pred ---CcccceEEccCCCCcEEEEEcC-CC--EEEEEECCCCceeeEecCCCCcEE---------EEEECC---CCC-EEEE
Confidence 4456778888876 4444433 33 466678888765543322 21122 234442 555 4555
Q ss_pred EEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 375 YRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 375 s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
...++.-.|| ++.+++....-.....+..+ ..+++.++..+. ...|.++|++++.
T Consensus 233 ~s~Dg~i~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~iwd~~~~~ 288 (340)
T 4aow_A 233 GGKDGQAMLW--DLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT----GPSIKIWDLEGKI 288 (340)
T ss_dssp EETTCEEEEE--ETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE----TTEEEEEETTTTE
T ss_pred EeCCCeEEEE--EeccCceeeeecCCceEEeeecCCCCceeeccC----CCEEEEEECCCCe
Confidence 5567765555 77666544333334445555 344554443332 2468888888765
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.6e-06 Score=74.86 Aligned_cols=93 Identities=11% Similarity=-0.113 Sum_probs=58.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.+++..... +.|.||++| + ....+. .. ++ .+|.|+++|++|.+......
T Consensus 10 ~g~~~~~~~~g------------~~~~vv~~H-~--~~~~~~--~~---l~-~~~~v~~~d~~G~G~s~~~~-------- 60 (131)
T 2dst_A 10 YGLNLVFDRVG------------KGPPVLLVA-E--EASRWP--EA---LP-EGYAFYLLDLPGYGRTEGPR-------- 60 (131)
T ss_dssp TTEEEEEEEEC------------CSSEEEEES-S--SGGGCC--SC---CC-TTSEEEEECCTTSTTCCCCC--------
T ss_pred CCEEEEEEEcC------------CCCeEEEEc-C--CHHHHH--HH---Hh-CCcEEEEECCCCCCCCCCCC--------
Confidence 67777654332 136899999 2 222222 11 43 45999999999765432210
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD 596 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~ 596 (732)
. . .++..+.+..+++.. +.+++.++|||+||.+++.++. +|.
T Consensus 61 ~-~-~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 61 M-A-PEELAHFVAGFAVMM--NLGAPWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp C-C-HHHHHHHHHHHHHHT--TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred C-C-HHHHHHHHHHHHHHc--CCCccEEEEEChHHHHHHHHHhcCCc
Confidence 0 0 445555555444442 3468999999999999999988 775
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00014 Score=75.04 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=92.9
Q ss_pred EEEEEeCCC--C--eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccC--C------C--CCCcee
Q 004735 156 TVIFSNYKD--Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR--Q------D--ALNSTT 221 (732)
Q Consensus 156 ~i~f~~~~~--~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~--~------~--~~~~~~ 221 (732)
+|++++... . .||.++.++ +..+.+..-.+..-.+.+|..+.++|++ |+....- + + ......
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~--~~~~~~~~~~g~~~~~pND~~v~~~G~f--yvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEE--KSLLHLKTIRHKLLPSVNDIVAVGPEHF--YATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTT--TEEEEEEEECCTTCSSEEEEEEEETTEE--EEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred EEEEEECCCCCCeEEEEEEECCC--CEEEEEeccccCCCCCCceEEEeCCCCE--EecCCcEeCCcccccchhhccCCcc
Confidence 566666553 2 688888765 4444343322222345689999999984 3333210 0 0 001247
Q ss_pred EEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 222 ~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
.||+++. ++ .+.+..+-.+-++.+|||||++|++.... ..+|++++++.+|++...+.+. .. .
T Consensus 204 ~vyr~d~--~~---~~~~~~~l~~pNGia~spDg~~lYvadt~-------~~~I~~~~~~~~g~l~~~~~~~-~~----g 266 (355)
T 3sre_A 204 FVTYYSP--ND---VRVVAEGFDFANGINISPDGKYVYIAELL-------AHKIHVYEKHANWTLTPLRVLS-FD----T 266 (355)
T ss_dssp EEEEECT--TC---CEEEEEEESSEEEEEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEE-CS----S
T ss_pred EEEEEEC--Ce---EEEeecCCcccCcceECCCCCEEEEEeCC-------CCeEEEEEECCCCcEecCEEEe-CC----C
Confidence 8999987 35 67777666677899999999999887632 3469999998667777666663 23 5
Q ss_pred cCcCceeCC-CCcEEEEEe
Q 004735 302 SPTEPKWSS-KGELFFVTD 319 (732)
Q Consensus 302 ~~~~~~wsp-Dg~l~~~~~ 319 (732)
.+..++.++ ||+++....
T Consensus 267 ~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 267 LVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEEEEEECTTTCCEEEEEE
T ss_pred CCceEEEeCCCCcEEEEec
Confidence 677889999 598666444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-05 Score=75.15 Aligned_cols=198 Identities=10% Similarity=-0.020 Sum_probs=111.5
Q ss_pred EEECCEEEEEeCCCC--eEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 151 RIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~--~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.++++.++.+....+ .|.++|+++ ++.. .+.-. . ++..-...++|++|+...+. .+.++++|
T Consensus 49 ~~~~~~LyestG~~g~S~v~~vD~~T--gkv~~~~~l~----~-~~FgeGit~~g~~ly~ltw~--------~~~v~v~D 113 (262)
T 3nol_A 49 FYRNGYFYESTGLNGRSSIRKVDIES--GKTLQQIELG----K-RYFGEGISDWKDKIVGLTWK--------NGLGFVWN 113 (262)
T ss_dssp EEETTEEEEEEEETTEEEEEEECTTT--CCEEEEEECC----T-TCCEEEEEEETTEEEEEESS--------SSEEEEEE
T ss_pred EEECCEEEEECCCCCCceEEEEECCC--CcEEEEEecC----C-ccceeEEEEeCCEEEEEEee--------CCEEEEEE
Confidence 345678888876654 899999998 5543 33222 1 11112255678887666543 27999999
Q ss_pred cCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
.++.+. ..++.-+. .+-.+++||++|+ ++ +. ..+|+++|.+ +.+........... .....+..+.
T Consensus 114 ~~t~~~--~~ti~~~~---eG~glt~dg~~L~-~S-dG------s~~i~~iDp~-T~~v~~~I~V~~~g-~~~~~lNELe 178 (262)
T 3nol_A 114 IRNLRQ--VRSFNYDG---EGWGLTHNDQYLI-MS-DG------TPVLRFLDPE-SLTPVRTITVTAHG-EELPELNELE 178 (262)
T ss_dssp TTTCCE--EEEEECSS---CCCCEEECSSCEE-EC-CS------SSEEEEECTT-TCSEEEEEECEETT-EECCCEEEEE
T ss_pred CccCcE--EEEEECCC---CceEEecCCCEEE-EE-CC------CCeEEEEcCC-CCeEEEEEEeccCC-ccccccceeE
Confidence 998762 33443322 2235678998874 54 22 3459999988 66653322222211 0001223467
Q ss_pred eCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccc---c--CCCceeecccceeeeeecCCCCEEEEEEEECCEEE
Q 004735 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE---F--SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (732)
Q Consensus 308 wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~---~--~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ 382 (732)
|. ||+||. ... ....|.++|+++|++........- . ..+. ....+.+++.+ ++++||++. ..++.
T Consensus 179 ~~-~G~lya-n~w--~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~-~~vlNGIA~dp---~~~~lfVTG--K~Wp~ 248 (262)
T 3nol_A 179 WV-DGEIFA-NVW--QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSP-IDVLNGIAWDK---EHHRLFVTG--KLWPK 248 (262)
T ss_dssp EE-TTEEEE-EET--TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSS-CCCEEEEEEET---TTTEEEEEE--TTCSE
T ss_pred EE-CCEEEE-EEc--cCCeEEEEECCCCcEEEEEECCcCccccccccCc-CCceEEEEEcC---CCCEEEEEC--CCCCc
Confidence 86 787654 333 234799999999987655432110 0 0010 01123445543 667777765 46778
Q ss_pred EEEEEC
Q 004735 383 LGILDD 388 (732)
Q Consensus 383 ly~~~~ 388 (732)
||.+.+
T Consensus 249 ~~ev~~ 254 (262)
T 3nol_A 249 VFEITL 254 (262)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 887754
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00011 Score=77.29 Aligned_cols=195 Identities=12% Similarity=0.017 Sum_probs=100.6
Q ss_pred CeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEecc-------CCCCC----CceeEEEEEEcCCCC
Q 004735 165 QRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-------RQDAL----NSTTEIVAIALNGQN 232 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~-------~~~~~----~~~~~l~~~d~~~~~ 232 (732)
+.|.++|.++ .+. .++..+... .....++.|+|+++. +++++-. +-.+. .....|.++|+++++
T Consensus 164 g~v~vlD~~T--~~v~~~~~~~~~~-~~~~Yd~~~~p~~~~-mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 164 GGILMLDHYS--FEPLGKWEIDRGD-QYLAYDFWWNLPNEV-LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp CEEEEECTTT--CCEEEECCSBCTT-CCCCCCEEEETTTTE-EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CeEEEEECCC--CeEEEEEccCCCC-ccccceEEECCCCCE-EEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 5899999987 543 334322111 122246789999995 5555310 00000 124799999999876
Q ss_pred ccccEEcccCCCceec-----cccCCCCCeEEEEec-cCCCCCCCccEEEEEEecCCCceeeeEEe--cCCCCCc-----
Q 004735 233 IQEPKVLVSGSDFYAF-----PRMDPRGERMAWIEW-HHPNMPWDKAELWVGYISENGDVYKRVCV--AGFDPTI----- 299 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~-----p~~SPDG~~la~~~~-~~~~~~~~~~~l~v~d~~~~g~~~~~~~~--~~~~~~~----- 299 (732)
. ...+.-+.. ... +.++|||++++.+.. +... ..++|+++..+ +|+......+ ......+
T Consensus 240 ~--~~tI~vg~~-g~~P~~i~f~~~Pdg~~aYV~~e~~~~~---Lss~V~v~~~d-~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 240 R--IHSLTLGEE-NRMALELRPLHDPTKLMGFINMVVSLKD---LSSSIWLWFYE-DGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp E--EEEEESCTT-EEEEEEEEECSSTTCCEEEEEEEEETTT---CCEEEEEEEEE-TTEEEEEEEEEECCEECCSSCCGG
T ss_pred E--eeEEecCCC-CCccceeEeeECCCCCEEEEEEeeeccC---CCceEEEEEec-CCceeEEEEEeCCCcccccccccc
Confidence 1 233333321 122 346999997655442 1111 23568887777 5655433332 1100000
Q ss_pred -------cccCcCceeCCCCcEEEEEeccCCeeeEEEEecc-CCeEEEec--ccccccCCCce------eecccceeeee
Q 004735 300 -------VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES-NNEVLAIY--SLDAEFSRPLW------VFGINSYEIIQ 363 (732)
Q Consensus 300 -------~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~-~g~~~~l~--~~~~~~~~~~w------~~~~~~~~~~~ 363 (732)
......+..|+||+.+|++++..+ .|..+|.. .++.+.+. .-...+..+.+ ..+.+.+.+.+
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d--~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIG--EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR 390 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEETTTT--EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeCCCC--EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC
Confidence 033567889999996667777344 55555553 33333321 11111100010 01235566665
Q ss_pred ecCCCCEEEEEE
Q 004735 364 SHGEKNLIACSY 375 (732)
Q Consensus 364 ~~~~~~~l~~~s 375 (732)
||++||++.
T Consensus 391 ---DGk~LyVaN 399 (462)
T 2ece_A 391 ---DGRRVYVTN 399 (462)
T ss_dssp ---TSSEEEEEC
T ss_pred ---CCCEEEEEc
Confidence 788888776
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.20 E-value=7.4e-06 Score=93.59 Aligned_cols=228 Identities=10% Similarity=0.027 Sum_probs=128.8
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC----CC
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----QN 232 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~----~~ 232 (732)
++|++ ...|+++++++ .....+.... .....+.|+++++.|+++.. . ...|+++++++ ..
T Consensus 380 ll~~~--~~~I~~id~~~--~~~~~~~~~~----~~p~gla~d~~~~~Ly~sD~-~-------~~~I~~~~~~g~~~~~~ 443 (699)
T 1n7d_A 380 LFFTN--RHEVRKMTLDR--SEYTSLIPNL----RNVVALDTEVASNRIYWSDL-S-------QRMICSTQLDRAHGVSS 443 (699)
T ss_dssp BCCCC--TTC-CEECTTS--CCEECCSCCC----TTCCCCEEETTTTEEEECCT-T-------TTSBEEEESCCCCC-CC
T ss_pred EEecC--ccceEEEeCCC--CcceeeeccC----cceEEEccccccCeEEEEec-C-------CCeEEEEecCCCCCCcc
Confidence 45553 34689999986 5555544331 12256789998888665532 2 25789999886 22
Q ss_pred ccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 233 IQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
...+. .+.....+.++.+.++.|+|+... ...|++++++ ++.. ..++.... ..+..++++|+
T Consensus 444 ---~~~~i~~~~~~P~glavD~~~g~LY~tD~~-------~~~I~v~d~d-g~~~--~~l~~~~~----~~P~giavDp~ 506 (699)
T 1n7d_A 444 ---YDTVISRDIQAPDGLAVDWIHSNIYWTDSV-------LGTVSVADTK-GVKR--KTLFREQG----SKPRAIVVDPV 506 (699)
T ss_dssp ---CCCBCCSCC--CCCEECCCSSSBCEECCTT-------TSCEEEEBSS-SCCE--EEECCCSS----CCCCCEECCSS
T ss_pred ---eEEEEeCCCCCcceEEEEeeCCcEEEEecc-------CCeEEEEecC-CCce--EEEEeCCC----CCcceEEEccC
Confidence 22222 222233456778778888776422 3458999886 3332 22333222 34567889987
Q ss_pred Cc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC
Q 004735 312 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 390 (732)
Q Consensus 312 g~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~ 390 (732)
+. |||+ +. .....|+++++++...+.+.... +. | .+.+.+.+ +++.|||+.. +...|+++++++
T Consensus 507 ~g~ly~t-d~-~~~~~I~~~~~dG~~~~~l~~~~--l~---~---PnGlavd~---~~~~LY~aD~--~~~~I~~~d~dG 571 (699)
T 1n7d_A 507 HGFMYWT-DW-GTPAKIKKGGLNGVDIYSLVTEN--IQ---W---PNGITLDL---LSGRLYWVDS--KLHSISSIDVNG 571 (699)
T ss_dssp SSCCEEC-CC-SSSCCEEBCCSSSCCCCEESCSS--CS---S---CCCEEECT---TTCCEEEEET--TTTEEEEECSSS
T ss_pred CCcEEEc-cc-CCCCeEEEEeCCCCCeeEEEeCC--CC---C---ccEEEEec---cCCEEEEEec--CCCeEEEEccCC
Confidence 66 6654 43 22367999988776555443221 11 1 12233432 5678888763 445789999988
Q ss_pred CceEEeccCC---CceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 391 HSLSLLDIPF---TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 391 ~~~~~lt~~~---~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
...+.+.... .....+..+++++|+... ....|++++..+|+
T Consensus 572 ~~~~~~~~~~~~~~~P~glavd~~~lywtd~---~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 572 GNRKTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS 616 (699)
T ss_dssp SCCEEECCCSSSCSSCCCCEEETTEEEEECS---TTTCEEEEETTTEE
T ss_pred CceEEEEecCCcCCCceEeEEECCEEEEEeC---CCCeEEEEEccCCC
Confidence 7666554321 222334445565554442 23578888877665
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00011 Score=76.29 Aligned_cols=115 Identities=6% Similarity=-0.091 Sum_probs=78.4
Q ss_pred CceeEEECC----EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCcee
Q 004735 147 GGAFRIFGD----TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT 221 (732)
Q Consensus 147 ~~~~~~~~~----~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~ 221 (732)
+.+..++++ ..+++...++.|.++++.+.+... +.+... ........|+|||++|+....+ .
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~d---------g 108 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH----TGPVLDVCWSDDGSKVFTASCD---------K 108 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC----SSCEEEEEECTTSSEEEEEETT---------S
T ss_pred eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc----cCCEEEEEECcCCCEEEEEcCC---------C
Confidence 445555554 677777778889999987520222 233322 3345678899999987755442 5
Q ss_pred EEEEEEcCCCCccccEEcccCCCceecccc--CCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce
Q 004735 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRM--DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV 286 (732)
Q Consensus 222 ~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~--SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~ 286 (732)
.|.++|+.+++ ...+......+....| +|||+.|+..+ ....|.++|+. +++.
T Consensus 109 ~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~dg~i~vwd~~-~~~~ 163 (368)
T 3mmy_A 109 TAKMWDLSSNQ---AIQIAQHDAPVKTIHWIKAPNYSCVMTGS--------WDKTLKFWDTR-SSNP 163 (368)
T ss_dssp EEEEEETTTTE---EEEEEECSSCEEEEEEEECSSCEEEEEEE--------TTSEEEEECSS-CSSC
T ss_pred cEEEEEcCCCC---ceeeccccCceEEEEEEeCCCCCEEEEcc--------CCCcEEEEECC-CCcE
Confidence 88999999887 6666555566677888 99999887665 23459999988 6654
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=98.20 E-value=5.7e-06 Score=86.37 Aligned_cols=100 Identities=12% Similarity=0.046 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCCCccC-----Cccc----HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHH-
Q 004735 495 PPLLVKSHGGPTSEAR-----GILN----LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF- 564 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~-----~~~~----~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~- 564 (732)
.|.||++||....... ..|. .+++.|.++||.|+++|++|.+ .+... ..++...++.
T Consensus 6 ~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G---~s~~~----------a~~l~~~i~~~ 72 (387)
T 2dsn_A 6 DAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLS---SNWDR----------ACEAYAQLVGG 72 (387)
T ss_dssp CCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSB---CHHHH----------HHHHHHHHHCE
T ss_pred CCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCC---Ccccc----------HHHHHHHHHhh
Confidence 4558899997543211 1233 3458888999999999998643 22111 1112222210
Q ss_pred -------HH----------------hcCCCCCCcEEEEEcChHHHHHHHHHh--------------------CC------
Q 004735 565 -------LV----------------GSGKADEKRLCITGGSAGGYTTLAALA--------------------FR------ 595 (732)
Q Consensus 565 -------l~----------------~~~~~d~~ri~i~G~S~GG~~a~~~~~--------------------~p------ 595 (732)
+. ++ ....+++.|+||||||.++..++. +|
T Consensus 73 ~vDy~~~~a~~~~~~~~~~~l~~ll~~-~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~ 151 (387)
T 2dsn_A 73 TVDYGAAHAAKHGHARFGRTYPGLLPE-LKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGH 151 (387)
T ss_dssp EEECCHHHHHHHTSCSEEEEECCSCGG-GGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCC
T ss_pred hhhhhhhhhhhccchhhhhhHHHHHHH-hcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccc
Confidence 10 01 023478999999999999988886 35
Q ss_pred CcceEEEeecCcC
Q 004735 596 DTFKAGASLYGVA 608 (732)
Q Consensus 596 ~~~~a~v~~~~~~ 608 (732)
++++.+|.+++..
T Consensus 152 ~~V~sLV~i~tP~ 164 (387)
T 2dsn_A 152 HFVLSVTTIATPH 164 (387)
T ss_dssp CCEEEEEEESCCT
T ss_pred cceeEEEEECCCC
Confidence 7899999888653
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00015 Score=75.47 Aligned_cols=213 Identities=13% Similarity=0.020 Sum_probs=114.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeE
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l 167 (732)
..+..+.++| |+++|.....+ .+ .+...+..++ +...-++-+ +.....+.+.+.++....++.+
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~--~~--~VsVID~~t~-~vv~tI~v~----------g~~~~~P~g~~~~~~~~~DG~~ 201 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSP--AP--AVGVVDLEGK-AFKRMLDVP----------DCYHIFPTAPDTFFMHCRDGSL 201 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSS--SC--EEEEEETTTT-EEEEEEECC----------SEEEEEEEETTEEEEEETTSCE
T ss_pred CCCceEEEcCCCCEEEEEEcCC--CC--eEEEEECCCC-cEEEEEECC----------CcceeecCCCceeEEECCCCCE
Confidence 3678899999 88877765422 13 3444555533 211111111 0011123333333344456777
Q ss_pred EEEeCCCCCCCcee-cCCC-CCCCCeEeeceeec-CCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc---
Q 004735 168 YKHSIDSKDSSPLP-ITPD-YGEPLVSYADGIFD-PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--- 241 (732)
Q Consensus 168 ~~~d~~~~~~~~~~-lt~~-~~~~~~~~~~~~~s-pdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--- 241 (732)
..+++.+. ++... .+.. +......+..+.|. +||+ ++|+.. ..++|++|+.++. ++.+..
T Consensus 202 ~~v~~~~~-g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~vs~---------~g~V~v~d~~~~~---~~v~~~~~~ 267 (386)
T 3sjl_D 202 AKVAFGTE-GTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVWPTY---------TGKIHQIDLSSGD---AKFLPAVEA 267 (386)
T ss_dssp EEEECCSS-SCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEEEBT---------TSEEEEEECTTSS---CEECCCEES
T ss_pred EEEECCCC-CeEEEeecceeccccccccccceeEcCCCc-EEEEeC---------CCEEEEEECCCCc---ceeecceec
Confidence 77777541 23211 0100 00012233445664 6885 466655 1589999998765 433211
Q ss_pred --------C--CCceeccccCCCCCeEEEEeccCCCCC--CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 242 --------G--SDFYAFPRMDPRGERMAWIEWHHPNMP--WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 242 --------~--~~~~~~p~~SPDG~~la~~~~~~~~~~--~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
+ ++-.....++||+++|+.......... ....+|+++|+. +++......+. .....+.++
T Consensus 268 ~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-t~kv~~~i~vg-------~~~~~lavs 339 (386)
T 3sjl_D 268 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKFEMG-------HEIDSINVS 339 (386)
T ss_dssp SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEEE-------EEECEEEEC
T ss_pred cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC-CCeEEEEEECC-------CCcceEEEC
Confidence 0 111223466899999876542211100 024789999998 77763322222 224578999
Q ss_pred CCCc-EEEEEeccCCeeeEEEEeccCCeEEEe
Q 004735 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 310 pDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l 340 (732)
+||+ ++|+++. +...|..+|..+++...-
T Consensus 340 ~D~~~~ly~tn~--~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 340 QDEKPLLYALST--GDKTLYIHDAESGEELRS 369 (386)
T ss_dssp SSSSCEEEEEET--TTTEEEEEETTTCCEEEE
T ss_pred CCCCeEEEEEcC--CCCeEEEEECCCCcEEEE
Confidence 9998 8888876 445688999998875543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.18 E-value=5.2e-05 Score=79.22 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=93.8
Q ss_pred EEECCEEEEE-eCCCCeEEEEeCCCCCCC-----------------ceecCCCCCCCCeEeeceeecCCCCEEEEEEecc
Q 004735 151 RIFGDTVIFS-NYKDQRLYKHSIDSKDSS-----------------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR 212 (732)
Q Consensus 151 ~~~~~~i~f~-~~~~~~l~~~d~~~~~~~-----------------~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 212 (732)
+++...+++. ...++.|.++|+.+ +. .+.+... .......+|||||++|+....+
T Consensus 144 ~~s~~~la~~sg~~~g~v~iwd~~~--~~~~~~~~~~~~~~~~~p~~~~~~~h----~~~v~~~~~s~~g~~l~s~s~d- 216 (355)
T 3vu4_A 144 EFSNGLLVYSNEFNLGQIHITKLQS--SGSATTQDQGVQQKAILGKGVLIKAH----TNPIKMVRLNRKSDMVATCSQD- 216 (355)
T ss_dssp EEETTEEEEEESSCTTCEEEEECCC--------------------CCEEECCC----SSCEEEEEECTTSSEEEEEETT-
T ss_pred EEEccEEEEeCCCcCcEEEEEECCC--CCccccccccccccccCcccEEEEcc----CCceEEEEECCCCCEEEEEeCC-
Confidence 3444667776 45678899999986 43 2334333 3456778899999986655442
Q ss_pred CCCCCCceeE-EEEEEcCCCCccccEEccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee
Q 004735 213 RQDALNSTTE-IVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR 289 (732)
Q Consensus 213 ~~~~~~~~~~-l~~~d~~~~~~~~~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~ 289 (732)
.. |.++|+.+++. ...+.. ....+...+|||||++|+..+. ...|.++|+. .+...+.
T Consensus 217 --------~~~v~iwd~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~--------d~~v~iw~~~-~~~~~~~ 277 (355)
T 3vu4_A 217 --------GTIIRVFKTEDGVL--VREFRRGLDRADVVDMKWSTDGSKLAVVSD--------KWTLHVFEIF-NDQDNKR 277 (355)
T ss_dssp --------CSEEEEEETTTCCE--EEEEECTTCCSCEEEEEECTTSCEEEEEET--------TCEEEEEESS-CCSCCCS
T ss_pred --------CCEEEEEECCCCcE--EEEEEcCCCCCcEEEEEECCCCCEEEEEEC--------CCEEEEEEcc-CCCCccc
Confidence 34 88889998761 334442 3456677899999999987762 3458888987 4432222
Q ss_pred EEecC-----C-CCCc-----------cccCcCceeCCCCcEEEEEeccCCeeeEEEEec
Q 004735 290 VCVAG-----F-DPTI-----------VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 290 ~~~~~-----~-~~~~-----------~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~ 332 (732)
..+.. . ...| ......++|++||+.++.... .|..++|.+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~-dg~~~~~~~~~ 336 (355)
T 3vu4_A 278 HALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH-TRMIETFKVVF 336 (355)
T ss_dssp EETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT-TTEEEEEEEEE
T ss_pred ccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC-CCeEEEEEEEc
Confidence 22111 0 0000 011245689999984444444 57777776654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00021 Score=74.79 Aligned_cols=130 Identities=7% Similarity=-0.012 Sum_probs=73.6
Q ss_pred CCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE-EcccCCCceeccccCCCCCeEEEEeccCCCCCC--CccEEE
Q 004735 200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELW 276 (732)
Q Consensus 200 pdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~--~~~~l~ 276 (732)
||++++ |+....... -....|+++|.++++ +. .+..+. .- ...+||||++||........... ....|.
T Consensus 13 ~~~~~~-yv~~~~~~~--~~d~~v~v~D~~t~~---~~~~i~~g~-~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~ 84 (361)
T 2oiz_A 13 PQENRI-YVMDSVFMH--LTESRVHVYDYTNGK---FLGMVPTAF-NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVE 84 (361)
T ss_dssp CGGGEE-EEEECCGGG--GGGCEEEEEETTTCC---EEEEEECCE-EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEE
T ss_pred CCCCEE-EEECCCCCc--cccCeEEEEECCCCe---EEEEecCCC-CC-ceEECCCCCEEEEEEecccccccCCCCCEEE
Confidence 578874 444321100 002589999998887 43 333332 22 67899999988765421100000 134589
Q ss_pred EEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE
Q 004735 277 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 277 v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
++|+. +++......+......-...+..+.++|||+.+|+++. .....|.++|+++++...
T Consensus 85 v~d~~-t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~-~~~~~v~v~d~~~~~~~~ 145 (361)
T 2oiz_A 85 VWDAD-KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA-SPATSIGIVDVAKGDYVE 145 (361)
T ss_dssp EEETT-TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE-SSSEEEEEEETTTTEEEE
T ss_pred EEECc-CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC-CCCCeEEEEECCCCcEEE
Confidence 99987 66653222222110000024567899999996666665 334568888998876543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-05 Score=76.04 Aligned_cols=200 Identities=9% Similarity=-0.112 Sum_probs=112.0
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
+.++++.++++...+++|.++|++++ ...+.+ -. ...+. -...++|++|+...+. .+.++++|.+
T Consensus 60 L~~~~~~Ly~stG~~g~v~~iD~~Tg-kv~~~~-l~----~~~Fg-eGit~~g~~Ly~ltw~--------~~~v~V~D~~ 124 (268)
T 3nok_A 60 LVFHQGHFFESTGHQGTLRQLSLESA-QPVWME-RL----GNIFA-EGLASDGERLYQLTWT--------EGLLFTWSGM 124 (268)
T ss_dssp EEEETTEEEEEETTTTEEEECCSSCS-SCSEEE-EC----TTCCE-EEEEECSSCEEEEESS--------SCEEEEEETT
T ss_pred EEEECCEEEEEcCCCCEEEEEECCCC-cEEeEE-CC----CCcce-eEEEEeCCEEEEEEcc--------CCEEEEEECC
Confidence 45568899999988889999999983 333444 22 11111 1246678887665442 2799999999
Q ss_pred CCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 230 ~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
+.+. ..++..+.+ +-.+++||++|+ ++ +. ..+|+++|.+ +.+........... .-...+..+.|.
T Consensus 125 Tl~~--~~ti~~~~e---GwGLt~Dg~~L~-vS-dG------s~~l~~iDp~-T~~v~~~I~V~~~g-~~v~~lNeLe~~ 189 (268)
T 3nok_A 125 PPQR--ERTTRYSGE---GWGLCYWNGKLV-RS-DG------GTMLTFHEPD-GFALVGAVQVKLRG-QPVELINELECA 189 (268)
T ss_dssp TTEE--EEEEECSSC---CCCEEEETTEEE-EE-CS------SSEEEEECTT-TCCEEEEEECEETT-EECCCEEEEEEE
T ss_pred cCcE--EEEEeCCCc---eeEEecCCCEEE-EE-CC------CCEEEEEcCC-CCeEEEEEEeCCCC-cccccccccEEe
Confidence 8762 334432221 234578999875 44 22 3469999988 66653322222221 100123456776
Q ss_pred CCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccc---ccC--CCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---EFS--RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 310 pDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~---~~~--~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
||+|| .... ....|.++|+++|++........ ... ...-..-.+.+++.+ ++++||++. ..+..||
T Consensus 190 -dG~ly-anvw--~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp---~~~rlfVTG--K~Wp~~~ 260 (268)
T 3nok_A 190 -NGVIY-ANIW--HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP---GSGRIFMTG--KLWPRLF 260 (268)
T ss_dssp -TTEEE-EEET--TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT---TTCCEEEEE--TTCSEEE
T ss_pred -CCEEE-EEEC--CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC---CCCEEEEeC--CCCCceE
Confidence 78765 3333 23479999999998765442210 000 000000112344432 566676654 4567788
Q ss_pred EEEC
Q 004735 385 ILDD 388 (732)
Q Consensus 385 ~~~~ 388 (732)
.+.+
T Consensus 261 ev~~ 264 (268)
T 3nok_A 261 EVRL 264 (268)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00017 Score=74.04 Aligned_cols=236 Identities=11% Similarity=0.082 Sum_probs=124.5
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCC----------------CCeEeeceeecC-CCCEEEEEEeccCCCCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE----------------PLVSYADGIFDP-RFNRYVTVREDRRQDALN 218 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~----------------~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~ 218 (732)
.++|+....+.|++++.++ +..+.+...... ...+.....+++ +|+ | |+.+..
T Consensus 31 ~~l~v~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l-~v~d~~------ 100 (322)
T 2fp8_A 31 KGFYTSVQDGRVIKYEGPN--SGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-L-YIVDCY------ 100 (322)
T ss_dssp SSEEEECTTSEEEEECCTT--TCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-E-EEEETT------
T ss_pred CEEEEEcCCCeEEEECCCC--CceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-E-EEEECC------
Confidence 4566766678899998875 544433211000 001224566887 554 3 343321
Q ss_pred ceeEEEEEEcCCCCccccEEcccC---C--CceeccccCC-CCCeEEEEeccCCCC----------CCCccEEEEEEecC
Q 004735 219 STTEIVAIALNGQNIQEPKVLVSG---S--DFYAFPRMDP-RGERMAWIEWHHPNM----------PWDKAELWVGYISE 282 (732)
Q Consensus 219 ~~~~l~~~d~~~~~~~~~~~lt~~---~--~~~~~p~~SP-DG~~la~~~~~~~~~----------~~~~~~l~v~d~~~ 282 (732)
..|+++|.+++. .+.+... . .+.....+.| ||+ |++........ ......|+++|.+
T Consensus 101 --~~i~~~d~~~g~---~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~- 173 (322)
T 2fp8_A 101 --YHLSVVGSEGGH---ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS- 173 (322)
T ss_dssp --TEEEEECTTCEE---CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT-
T ss_pred --CCEEEEeCCCCE---EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCC-
Confidence 358899988776 5555321 1 1234567899 885 76665321100 0023579999976
Q ss_pred CCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCC---eEEEecccccccCCCceeecccce
Q 004735 283 NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN---EVLAIYSLDAEFSRPLWVFGINSY 359 (732)
Q Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g---~~~~l~~~~~~~~~~~w~~~~~~~ 359 (732)
+++... ..... .....++|++||+.+|+++. +..+|++++++++ +.+.+... ..| ..+
T Consensus 174 ~~~~~~--~~~~~-----~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~----~gP------~gi 234 (322)
T 2fp8_A 174 TKETTL--LLKEL-----HVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKI----PNP------GNI 234 (322)
T ss_dssp TTEEEE--EEEEE-----SCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEEC----SSE------EEE
T ss_pred CCEEEE--eccCC-----ccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeC----CCC------CCe
Confidence 565422 12221 23457899999995555554 3456888888753 33333211 111 223
Q ss_pred eeeeecCCCCEEEEEEEE--------CCEEEEEEEECCCCceEEeccCC----CceEEeeEeCCEEEEEEeCCCCCcEEE
Q 004735 360 EIIQSHGEKNLIACSYRQ--------NGRSYLGILDDFGHSLSLLDIPF----TDIDNITLGNDCLFVEGASGVEPSSVA 427 (732)
Q Consensus 360 ~~~~~~~~~~~l~~~s~~--------~g~~~ly~~~~~~~~~~~lt~~~----~~v~~~~~~~~~~~~~~~~~~~~~~ly 427 (732)
.+- .++.||++... .....|++++.++...+.+..+. ..+..+...++++++.... ...|.
T Consensus 235 ~~d----~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~---~~~i~ 307 (322)
T 2fp8_A 235 KRN----ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF---HGSVG 307 (322)
T ss_dssp EEC----TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSS---CSEEE
T ss_pred EEC----CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecC---CCceE
Confidence 332 33346655543 22467999999876666666543 2233443445655543322 24577
Q ss_pred EEEcCCC
Q 004735 428 KVTLDDH 434 (732)
Q Consensus 428 ~~dl~~~ 434 (732)
+++++..
T Consensus 308 ~~~~~~~ 314 (322)
T 2fp8_A 308 ILVYDKK 314 (322)
T ss_dssp EEEC---
T ss_pred EEecccc
Confidence 7776543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=5.5e-05 Score=84.91 Aligned_cols=205 Identities=11% Similarity=0.118 Sum_probs=122.9
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeE
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l 167 (732)
..+.++.+++ ++.|||.+... + .|++....++.....++..+ +....+.++.+.++.|++.+...+.|
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~---~--~I~r~~~~g~~~~~~v~~~~------~~~P~GlAvD~~~~~ly~~d~~~~~I 108 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSE---E--AIKRTEFNKTESVQNVVVSG------LLSPDGLACDWLGEKLYWTDSETNRI 108 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTT---T--EEEEEEC-----CEEEECSS------CSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEEEeCCCEEEEEECCC---C--eEEEEEccCCCceEEEEeCC------CCCcCeEEEEecCCEEEEEeCCCCEE
Confidence 4567889999 99999998742 3 46666555211112233222 11122333444467899998888899
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-CCCce
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFY 246 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~~~~~ 246 (732)
.+.++++ ...+.|.... .....+.+++|.+.+|+++.... ...|++.++++.. .+.+.. .-..-
T Consensus 109 ~v~~~dG--~~~~~l~~~~---l~~P~~Iavdp~~g~ly~tD~g~-------~~~I~r~~~dG~~---~~~l~~~~~~~P 173 (619)
T 3s94_A 109 EVSNLDG--SLRKVLFWQE---LDQPRAIALDPSSGFMYWTDWGE-------VPKIERAGMDGSS---RFIIINSEIYWP 173 (619)
T ss_dssp EEEETTS--CSCEEEECSS---CSCCCCEEEETTTTEEEEEECSS-------SCEEEEEETTSCS---CEEEECSSCSSE
T ss_pred EEEECCC--CCEEEEEeCC---CCCCceEEEecCCCeEEEeccCC-------CCEEEEEECCCCc---eEEEEeCCCCCC
Confidence 9999986 5555554321 12236788999888766664321 2589999999876 555543 33344
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
.+.+++|++++|+|.... ...|+++|++ ++.. ..+..+.. ..+..+++..| .||+ ++. +...
T Consensus 174 ~Glald~~~~~LY~aD~~-------~~~I~~~~~d-G~~~--~~~~~~~~----~~P~gi~~~~~-~ly~-td~--~~~~ 235 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAK-------LNFIHKSNLD-GTNR--QAVVKGSL----PHPFALTLFED-ILYW-TDW--STHS 235 (619)
T ss_dssp EEEEEETTTTEEEEEETT-------TCCEEEESSS-CCEE--C-------------CCCEEESSS-EEEE-ECT--TTCS
T ss_pred cEEEEEccCCEEEEEeCC-------CCeEEEecCC-CCcc--EEEEeCCC----CCceEEEEeCC-EEEE-ecC--CCCE
Confidence 667899999999888632 3459999987 3322 22222222 34456666555 3554 454 4457
Q ss_pred EEEEeccCCeE
Q 004735 327 LHKWIESNNEV 337 (732)
Q Consensus 327 l~~~d~~~g~~ 337 (732)
|+++|..+|+.
T Consensus 236 V~~~d~~tg~~ 246 (619)
T 3s94_A 236 ILACNKYTGEG 246 (619)
T ss_dssp EEEEESSSCCC
T ss_pred EEEEECCCCcc
Confidence 88899877753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00017 Score=78.12 Aligned_cols=234 Identities=12% Similarity=0.040 Sum_probs=130.6
Q ss_pred CCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeec--CCCCEEEEEEeccCCCCCCceeE
Q 004735 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFD--PRFNRYVTVREDRRQDALNSTTE 222 (732)
Q Consensus 146 g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~~~~~~~~~ 222 (732)
.+.+..++++..+++...++.|.++|+.+ ++. ..+... ........|+ ++++.++....+ ..
T Consensus 164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~--~~~~~~~~~h----~~~v~~l~~~~~~~~~~l~s~s~d---------~~ 228 (464)
T 3v7d_B 164 GVWALKYAHGGILVSGSTDRTVRVWDIKK--GCCTHVFEGH----NSTVRCLDIVEYKNIKYIVTGSRD---------NT 228 (464)
T ss_dssp CEEEEEECSTTEEEEEETTSCEEEEETTT--TEEEEEECCC----SSCEEEEEEEESSSCEEEEEEETT---------SC
T ss_pred CEEEEEEcCCCEEEEEeCCCCEEEEECCC--CcEEEEECCC----CCccEEEEEecCCCCCEEEEEcCC---------Cc
Confidence 34455566554666777788999999987 443 333322 2233344455 677775555432 46
Q ss_pred EEEEEcCCCCccccEEc-----------------------ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEE
Q 004735 223 IVAIALNGQNIQEPKVL-----------------------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGY 279 (732)
Q Consensus 223 l~~~d~~~~~~~~~~~l-----------------------t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d 279 (732)
|.++|+.++. .... ..+.. ..-..++|||+.|+.... ...|.++|
T Consensus 229 i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~--------d~~i~vwd 296 (464)
T 3v7d_B 229 LHVWKLPKES---SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM-ASVRTVSGHGNIVVSGSY--------DNTLIVWD 296 (464)
T ss_dssp EEEEECCCCC---CC------CCSSEEESCGGGCTTEEEEECCCS-SCEEEEEEETTEEEEEET--------TSCEEEEE
T ss_pred EEEeeCCCCc---ccccccccCCcceEeeccCCCeEEEEEccCcc-ceEEEEcCCCCEEEEEeC--------CCeEEEEE
Confidence 7778887654 2110 01110 111246889998876652 23489999
Q ss_pred ecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccce
Q 004735 280 ISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSY 359 (732)
Q Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~ 359 (732)
+. +++. +..+.+.. ..+..+.|+|||+.+++... .+ .|..+|+.+++........ ..+. ..+
T Consensus 297 ~~-~~~~--~~~~~~~~----~~v~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~h---~~~v-----~~~ 358 (464)
T 3v7d_B 297 VA-QMKC--LYILSGHT----DRIYSTIYDHERKRCISASM-DT--TIRIWDLENGELMYTLQGH---TALV-----GLL 358 (464)
T ss_dssp TT-TTEE--EEEECCCS----SCEEEEEEETTTTEEEEEET-TS--CEEEEETTTTEEEEEECCC---SSCE-----EEE
T ss_pred CC-CCcE--EEEecCCC----CCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEEeCC---CCcE-----EEE
Confidence 98 6654 45555554 56778899999995545544 34 3667788777654433221 1111 122
Q ss_pred eeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 360 EIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 360 ~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+ +++ .+++...+|.-.+| ++.++...........+..+ ...++.+++.++ . ..+.++|+.+++.
T Consensus 359 ~~-----~~~-~l~s~s~dg~v~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d---g~i~iwd~~~g~~ 424 (464)
T 3v7d_B 359 RL-----SDK-FLVSAAADGSIRGW--DANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E---NQFNIYNLRSGKL 424 (464)
T ss_dssp EE-----CSS-EEEEEETTSEEEEE--ETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T---TEEEEEETTTCCE
T ss_pred EE-----cCC-EEEEEeCCCcEEEE--ECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C---CeEEEEECCCCcE
Confidence 33 444 44555566765555 66665543332222222222 334455555554 2 4799999998874
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00022 Score=70.79 Aligned_cols=200 Identities=16% Similarity=0.125 Sum_probs=107.8
Q ss_pred ccCceEEcCCCcEEE-EeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-CEEEEEeCCCCeE
Q 004735 90 RLGGTAVDGHGRLIW-LESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-~~i~f~~~~~~~l 167 (732)
.+.++.++|.+.+|+ .+.. .+ .|++++.+++ ........ . ......+++++ +.+++... ++.|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~---~~--~i~~~~~~~~--~~~~~~~~-~------~~~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGM---YG--RVVKLATGST--GTTVLPFN-G------LYQPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCCEEEEECSS---SC--EEEEECC-------EECCCC-S------CCSCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEECCCCCEEEEccCC---CC--cEEEecCCCc--ccceEeeC-C------cCCcceeEECCCCCEEEEcC-CCEE
Confidence 667889988445777 5432 23 3556655422 22222111 0 01122344443 35666665 7789
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-CCCce
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFY 246 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~~~~~ 246 (732)
++++.++ ...+.+.... ........++|+|+ |+ +.... ...|++++..+.. ...... +....
T Consensus 90 ~~~d~~~--~~~~~~~~~~---~~~p~~i~~~~~g~-l~-v~~~~-------~~~i~~~~~~~~~---~~~~~~~~~~~p 152 (270)
T 1rwi_B 90 VTLAAGS--NNQTVLPFDG---LNYPEGLAVDTQGA-VY-VADRG-------NNRVVKLAAGSKT---QTVLPFTGLNDP 152 (270)
T ss_dssp EEECTTC--SCCEECCCCS---CSSEEEEEECTTCC-EE-EEEGG-------GTEEEEECTTCCS---CEECCCCSCCSC
T ss_pred EEEeCCC--ceEeeeecCC---cCCCcceEECCCCC-EE-EEECC-------CCEEEEEECCCce---eEeeccccCCCc
Confidence 9999886 5554443221 12335678999998 33 33322 2578888765544 333221 22234
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
....++|||+ |++... ....|+++|.+ ++... ....... ..+..+.+++||.+|+... +...
T Consensus 153 ~~i~~~~~g~-l~v~~~-------~~~~i~~~~~~-~~~~~--~~~~~~~----~~p~~i~~d~~g~l~v~~~---~~~~ 214 (270)
T 1rwi_B 153 DGVAVDNSGN-VYVTDT-------DNNRVVKLEAE-SNNQV--VLPFTDI----TAPWGIAVDEAGTVYVTEH---NTNQ 214 (270)
T ss_dssp CCEEECTTCC-EEEEEG-------GGTEEEEECTT-TCCEE--ECCCSSC----CSEEEEEECTTCCEEEEET---TTSC
T ss_pred eeEEEeCCCC-EEEEEC-------CCCEEEEEecC-CCceE--eecccCC----CCceEEEECCCCCEEEEEC---CCCc
Confidence 5678899997 655442 13469999876 44331 1111111 3355778999997665443 2345
Q ss_pred EEEEeccCCeEEE
Q 004735 327 LHKWIESNNEVLA 339 (732)
Q Consensus 327 l~~~d~~~g~~~~ 339 (732)
|+++++++.....
T Consensus 215 v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 215 VVKLLAGSTTSTV 227 (270)
T ss_dssp EEEECTTCSCCEE
T ss_pred EEEEcCCCCccee
Confidence 8888887765443
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.15 E-value=6.4e-06 Score=87.29 Aligned_cols=110 Identities=11% Similarity=-0.028 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCCCc------cCCccc----HHHHHHHHCCCEEEEEcCCCCCCCChhhHHh------hccCCCc-----
Q 004735 494 KPPLLVKSHGGPTSE------ARGILN----LSIQYWTSRGWAFVDVNYGGSTGYGREFRER------LLGRWGI----- 552 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~------~~~~~~----~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~------~~~~~~~----- 552 (732)
..|.||++||..... ....|. .+.+.|.++||.|+++|++|.+......... .....+.
T Consensus 51 ~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~~ 130 (431)
T 2hih_A 51 NKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSEK 130 (431)
T ss_dssp CSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHHH
T ss_pred CCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhcccccccccccc
Confidence 346689999975431 123342 4788889999999999999754321100000 0000000
Q ss_pred ----ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh---------------------------CCCcceEE
Q 004735 553 ----VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---------------------------FRDTFKAG 601 (732)
Q Consensus 553 ----~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---------------------------~p~~~~a~ 601 (732)
...+|+.+. +++.. ..+++.|+||||||.+++.++. +|+++..+
T Consensus 131 ~~~~~~a~dl~~l----l~~l~-~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~sl 205 (431)
T 2hih_A 131 YGHERYGKTYEGV----LKDWK-PGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSI 205 (431)
T ss_dssp HTCCSEEEEECCS----CTTCB-TTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEEE
T ss_pred CCHHHHHHHHHHH----HHHhC-CCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeEE
Confidence 000111111 11110 1378999999999999988754 47889999
Q ss_pred EeecCcC
Q 004735 602 ASLYGVA 608 (732)
Q Consensus 602 v~~~~~~ 608 (732)
+++++..
T Consensus 206 v~i~tP~ 212 (431)
T 2hih_A 206 TTIATPH 212 (431)
T ss_dssp EEESCCT
T ss_pred EEECCCC
Confidence 9988754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00012 Score=78.61 Aligned_cols=242 Identities=9% Similarity=0.093 Sum_probs=130.1
Q ss_pred CceeEEEC--CEEEEEeCCCCeEEEEeCCC---CCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCce
Q 004735 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDS---KDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST 220 (732)
Q Consensus 147 ~~~~~~~~--~~i~f~~~~~~~l~~~d~~~---~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 220 (732)
+.+..+++ +.++++...++.|.++|+.+ + ...+ .++.. ........+|+|+++.|+....+
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d--------- 132 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-EVYSSSLTYD---CSSTVTQITMIPNFDAFAVSSKD--------- 132 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-CCCSCSEEEE---CSSCEEEEEECTTSSEEEEEETT---------
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECcccccC-cccceeeecc---CCCCEEEEEEeCCCCEEEEEeCC---------
Confidence 34445554 34566666788899999853 1 1111 11111 12345678899999987665542
Q ss_pred eEEEEEEcC---CCCccccEEccc-------------CCCceec--cccCCCCCeEEEEeccCCCCCCCccEEEEEEecC
Q 004735 221 TEIVAIALN---GQNIQEPKVLVS-------------GSDFYAF--PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE 282 (732)
Q Consensus 221 ~~l~~~d~~---~~~~~~~~~lt~-------------~~~~~~~--p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~ 282 (732)
..|.++|+. .++ ...... ....... ..++|||+.|+... ....|.++|+.
T Consensus 133 g~i~vwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~d~~i~iwd~~- 200 (437)
T 3gre_A 133 GQIIVLKVNHYQQES---EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT--------NLSRVIIFDIR- 200 (437)
T ss_dssp SEEEEEEEEEEEETT---EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE--------TTSEEEEEETT-
T ss_pred CEEEEEEeccccCCc---eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe--------CCCeEEEEeCC-
Confidence 466666663 333 222111 1111111 22678998887766 23469999998
Q ss_pred CCceeeeEEecC--CCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec--ccccccCCCceeecccc
Q 004735 283 NGDVYKRVCVAG--FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGINS 358 (732)
Q Consensus 283 ~g~~~~~~~~~~--~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~~~ 358 (732)
+++. +..+.. .. ..+..+.|+|||+++++... .|. |..+|+.+++..... .....+....|.+
T Consensus 201 ~~~~--~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---- 267 (437)
T 3gre_A 201 TLER--LQIIENSPRH----GAVSSICIDEECCVLILGTT-RGI--IDIWDIRFNVLIRSWSFGDHAPITHVEVCQ---- 267 (437)
T ss_dssp TCCE--EEEEECCGGG----CCEEEEEECTTSCEEEEEET-TSC--EEEEETTTTEEEEEEBCTTCEEEEEEEECT----
T ss_pred CCee--eEEEccCCCC----CceEEEEECCCCCEEEEEcC-CCe--EEEEEcCCccEEEEEecCCCCceEEEEecc----
Confidence 6665 344444 22 56778899999985555554 343 666677777654322 2222222222222
Q ss_pred eeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE-EeccC--------------------------CCceEEeeEeCC
Q 004735 359 YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIP--------------------------FTDIDNITLGND 411 (732)
Q Consensus 359 ~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~-~lt~~--------------------------~~~v~~~~~~~~ 411 (732)
.|. .++.++++...++ .|.++++.+++.. .+... ...+..+...++
T Consensus 268 -~~s----~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~ 340 (437)
T 3gre_A 268 -FYG----KNSVIVVGGSSKT--FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSND 340 (437)
T ss_dssp -TTC----TTEEEEEEESTTE--EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETT
T ss_pred -ccC----CCccEEEEEcCCC--cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCc
Confidence 111 3344555554454 4555577766532 23211 111333422355
Q ss_pred EEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 412 CLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 412 ~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+++.++.. ..|+++|+.+++.
T Consensus 341 ~~l~s~~~d---~~i~~wd~~~~~~ 362 (437)
T 3gre_A 341 KILLTDEAT---SSIVMFSLNELSS 362 (437)
T ss_dssp EEEEEEGGG---TEEEEEETTCGGG
T ss_pred eEEEecCCC---CeEEEEECCCccc
Confidence 666655543 3788999888764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.8e-05 Score=80.48 Aligned_cols=199 Identities=11% Similarity=-0.047 Sum_probs=114.2
Q ss_pred CeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc--------------cCCCceeccccCC-
Q 004735 190 LVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--------------SGSDFYAFPRMDP- 253 (732)
Q Consensus 190 ~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt--------------~~~~~~~~p~~SP- 253 (732)
.......+|+| ||++|+....+ ..|.++++.+++ ..... .....+....|+|
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~d---------g~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSD---------GVIVLYDLENSS---RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETT---------SCEEEEECCCCS---SSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred CCcEEEEEEecCCCCEEEEEcCC---------CeEEEEECCCCc---ccceEeccccccccccccccCCCcEEEEEEccC
Confidence 34557788999 99987665542 468888988765 22111 1334566789999
Q ss_pred CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC---CcEEEEEeccCCeeeEEEE
Q 004735 254 RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK---GELFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 254 DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD---g~l~~~~~~~~g~~~l~~~ 330 (732)
+++.|+..+ ....|.++|+. +++. ...+... ..+....|+++ +.+++.... .+ .|..+
T Consensus 111 ~~~~l~s~~--------~d~~i~iwd~~-~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~ 171 (408)
T 4a11_B 111 DTGMFTSSS--------FDKTLKVWDTN-TLQT--ADVFNFE-----ETVYSHHMSPVSTKHCLVAVGTR-GP--KVQLC 171 (408)
T ss_dssp CTTCEEEEE--------TTSEEEEEETT-TTEE--EEEEECS-----SCEEEEEECSSCSSCCEEEEEES-SS--SEEEE
T ss_pred CCcEEEEEe--------CCCeEEEeeCC-CCcc--ceeccCC-----CceeeeEeecCCCCCcEEEEEcC-CC--eEEEE
Confidence 666666554 23458999998 6654 3333322 33456677774 445555544 44 46666
Q ss_pred eccCCeEEE-ecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC--ceEEe-----------
Q 004735 331 IESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH--SLSLL----------- 396 (732)
Q Consensus 331 d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~--~~~~l----------- 396 (732)
|+.+++... +......+....|++ +++.++++...+|.-.+| ++..+ ....+
T Consensus 172 d~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~ll~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 172 DLKSGSCSHILQGHRQEILAVSWSP------------RYDYILATASADSRVKLW--DVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp ESSSSCCCEEECCCCSCEEEEEECS------------SCTTEEEEEETTSCEEEE--ETTCSSCCSEECCTTTTCSCCCT
T ss_pred eCCCcceeeeecCCCCcEEEEEECC------------CCCcEEEEEcCCCcEEEE--ECCCCCcccccccccccccceee
Confidence 777765433 322222222233333 666667777777766666 44433 22333
Q ss_pred ----ccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 397 ----DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 397 ----t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
......+..+ ..+++..++.++.. ..+.++|+.+++.
T Consensus 238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~ 279 (408)
T 4a11_B 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTD---NRMRLWNSSNGEN 279 (408)
T ss_dssp TTSSCSCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCB
T ss_pred ccccccccCceeEEEEcCCCCEEEEecCC---CeEEEEECCCCcc
Confidence 1223446666 34455555555543 3588888888764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00011 Score=71.59 Aligned_cols=198 Identities=12% Similarity=0.083 Sum_probs=117.4
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEEe
Q 004735 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (732)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d 171 (732)
.++.++ ++.+|.... ..|+..|...+.++|.....+...+ ++-+....+.+++|+.....++.++++|
T Consensus 46 qGL~~~-~~~LyestG---~~g~S~v~~vD~~Tgkv~~~~~l~~--------~~FgeGit~~g~~ly~ltw~~~~v~v~D 113 (262)
T 3nol_A 46 EGFFYR-NGYFYESTG---LNGRSSIRKVDIESGKTLQQIELGK--------RYFGEGISDWKDKIVGLTWKNGLGFVWN 113 (262)
T ss_dssp EEEEEE-TTEEEEEEE---ETTEEEEEEECTTTCCEEEEEECCT--------TCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred ceEEEE-CCEEEEECC---CCCCceEEEEECCCCcEEEEEecCC--------ccceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence 688888 777777655 2466678888888763222221111 1222336677899999988889999999
Q ss_pred CCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc--cCC---Cce
Q 004735 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGS---DFY 246 (732)
Q Consensus 172 ~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt--~~~---~~~ 246 (732)
.++. .....+.... ....+++||++| |+++. ...|+++|.++.+. ...+. .+. ...
T Consensus 114 ~~t~-~~~~ti~~~~-------eG~glt~dg~~L-~~SdG--------s~~i~~iDp~T~~v--~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 114 IRNL-RQVRSFNYDG-------EGWGLTHNDQYL-IMSDG--------TPVLRFLDPESLTP--VRTITVTAHGEELPEL 174 (262)
T ss_dssp TTTC-CEEEEEECSS-------CCCCEEECSSCE-EECCS--------SSEEEEECTTTCSE--EEEEECEETTEECCCE
T ss_pred CccC-cEEEEEECCC-------CceEEecCCCEE-EEECC--------CCeEEEEcCCCCeE--EEEEEeccCCcccccc
Confidence 9872 2233444321 112356788874 44331 26899999998762 22332 211 122
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC------CccccCcCceeCCCCcEEEEEec
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP------TIVESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~------~~~~~~~~~~wspDg~l~~~~~~ 320 (732)
+...|. || +|+... |....|.++|.+ +|++.....+.+-.+ ........++|+|+++.+|++..
T Consensus 175 NELe~~-~G-~lyan~-------w~~~~I~vIDp~-tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 175 NELEWV-DG-EIFANV-------WQTNKIVRIDPE-TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEE-TT-EEEEEE-------TTSSEEEEECTT-TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ceeEEE-CC-EEEEEE-------ccCCeEEEEECC-CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 335665 77 465443 234569999998 888754443322100 00023467899999885556554
Q ss_pred cCCeeeEEEEec
Q 004735 321 KNGFWNLHKWIE 332 (732)
Q Consensus 321 ~~g~~~l~~~d~ 332 (732)
.+..||.+.+
T Consensus 245 --~Wp~~~ev~~ 254 (262)
T 3nol_A 245 --LWPKVFEITL 254 (262)
T ss_dssp --TCSEEEEEEE
T ss_pred --CCCceEEEEE
Confidence 5677887654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0001 Score=85.51 Aligned_cols=213 Identities=12% Similarity=0.066 Sum_probs=120.2
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCC--CCeEEEEeccCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNM 268 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPD--G~~la~~~~~~~~~ 268 (732)
.....++|+|||++|+....+ ..|.++++.++.......+......+....|||| |+.|+..+.
T Consensus 10 ~~V~~l~~s~dg~~latg~~d---------g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~----- 75 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSD---------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY----- 75 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETT---------TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET-----
T ss_pred ceeEEEEECCCCCeEEEEECC---------CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC-----
Confidence 345667899999986655442 4677778764431112333344456677899998 998877662
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC--CcEEEEEeccCCeeeEEEEeccCCe---EEEeccc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK--GELFFVTDRKNGFWNLHKWIESNNE---VLAIYSL 343 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD--g~l~~~~~~~~g~~~l~~~d~~~g~---~~~l~~~ 343 (732)
...|.++|+. +++......+.+.. ..+..+.|+|+ |+++++... .|. |..+|+.++. ...+...
T Consensus 76 ---Dg~I~vwd~~-~~~~~~~~~~~~h~----~~V~~v~~sp~~~~~~l~sgs~-dg~--I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 76 ---DGKVLIWKEE-NGRWSQIAVHAVHS----ASVNSVQWAPHEYGPLLLVASS-DGK--VSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp ---TSCEEEEEEE-TTEEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEET-TSE--EEEEECCSSSCCCCEEEECC
T ss_pred ---CCeEEEEECC-CCcccccccccCCC----CCeEEEEECCCCCCCEEEEEeC-CCc--EEEEEeecCCCcceeEeecC
Confidence 2348899998 67644455555554 66788999999 775555554 454 5555655542 1222222
Q ss_pred ccccCCCceeeccc----ceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce---EEeccCCCceEEe-eEeC---CE
Q 004735 344 DAEFSRPLWVFGIN----SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL---SLLDIPFTDIDNI-TLGN---DC 412 (732)
Q Consensus 344 ~~~~~~~~w~~~~~----~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~---~~lt~~~~~v~~~-~~~~---~~ 412 (732)
...+....|.+... ..... .++.++++...+|.-++|-+....... ..+......+..+ ..++ +.
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~----~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGT----KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp SSCEEEEEECCCC---------C----GGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred CCceEEEEecCcccccccccccC----CCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 22222233332100 00000 024455666678877777665443222 2334445567777 3444 66
Q ss_pred EEEEEeCCCCCcEEEEEEcCCCc
Q 004735 413 LFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 413 ~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+++.++.. ..|.++|+.+++
T Consensus 221 ~l~s~s~D---g~I~iwd~~~~~ 240 (753)
T 3jro_A 221 YLASVSQD---RTCIIWTQDNEQ 240 (753)
T ss_dssp EEEEEESS---SCEEEEEESSSS
T ss_pred EEEEEecC---CEEEEecCCCCC
Confidence 76666543 246777776653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=6.4e-05 Score=74.06 Aligned_cols=201 Identities=10% Similarity=-0.138 Sum_probs=109.0
Q ss_pred EEEC-CEEEEEeCC--CCeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 151 RIFG-DTVIFSNYK--DQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 151 ~~~~-~~i~f~~~~--~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
.+++ +.++.+... .+.|.++|+++ ++..+ +.-+. .. ....+.++|++|+...+. .+.++++
T Consensus 27 ~~~~dg~Lyvstg~~~~s~v~~iD~~t--g~v~~~i~l~~---~~--fgeGi~~~g~~lyv~t~~--------~~~v~vi 91 (266)
T 2iwa_A 27 VYAENDTLFESTGLYGRSSVRQVALQT--GKVENIHKMDD---SY--FGEGLTLLNEKLYQVVWL--------KNIGFIY 91 (266)
T ss_dssp EECSTTEEEEEECSTTTCEEEEEETTT--CCEEEEEECCT---TC--CEEEEEEETTEEEEEETT--------CSEEEEE
T ss_pred EEeCCCeEEEECCCCCCCEEEEEECCC--CCEEEEEecCC---Cc--ceEEEEEeCCEEEEEEec--------CCEEEEE
Confidence 3444 566666543 46899999998 65433 22221 11 111245567886665442 2689999
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|.++.+. ...+..+ . -.+-.++|||++|+ ++ +. ...|+++|.+ +.+........... .-...+..+
T Consensus 92 D~~t~~v--~~~i~~g-~-~~g~glt~Dg~~l~-vs-~g------s~~l~viD~~-t~~v~~~I~Vg~~~-~p~~~~nel 157 (266)
T 2iwa_A 92 DRRTLSN--IKNFTHQ-M-KDGWGLATDGKILY-GS-DG------TSILYEIDPH-TFKLIKKHNVKYNG-HRVIRLNEL 157 (266)
T ss_dssp ETTTTEE--EEEEECC-S-SSCCEEEECSSSEE-EE-CS------SSEEEEECTT-TCCEEEEEECEETT-EECCCEEEE
T ss_pred ECCCCcE--EEEEECC-C-CCeEEEEECCCEEE-EE-CC------CCeEEEEECC-CCcEEEEEEECCCC-cccccceeE
Confidence 9998762 3344333 0 11234789999886 44 22 3469999988 65542222221111 000123456
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccc---c---cCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---E---FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~---~---~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
.|. ||++| .... ....|.++|+++++.....+... . ...+.- ...+.+.+.+ +++++|++. ..+
T Consensus 158 e~~-dg~ly-vn~~--~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~-~v~nGIa~~~---~~~~lfVTg--k~~ 227 (266)
T 2iwa_A 158 EYI-NGEVW-ANIW--QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDI-DVLNGIAWDQ---ENKRIFVTG--KLW 227 (266)
T ss_dssp EEE-TTEEE-EEET--TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTC-CCEEEEEEET---TTTEEEEEE--TTC
T ss_pred EEE-CCEEE-EecC--CCCeEEEEECCCCcEEEEEECCCccccccccccccc-CceEEEEEcC---CCCEEEEEC--CCC
Confidence 777 77655 4443 23479999999998654432210 0 000100 0112344543 667777665 355
Q ss_pred EEEEEEECCC
Q 004735 381 SYLGILDDFG 390 (732)
Q Consensus 381 ~~ly~~~~~~ 390 (732)
..||.+++..
T Consensus 228 ~~v~~i~l~~ 237 (266)
T 2iwa_A 228 PKLFEIKLHL 237 (266)
T ss_dssp SEEEEEEEEE
T ss_pred CeEEEEEEec
Confidence 6777777654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00014 Score=85.99 Aligned_cols=206 Identities=9% Similarity=-0.073 Sum_probs=117.9
Q ss_pred CceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 147 ~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
+.+++++++ .++.+...++.|.+++..+ .+....... .......+|+| |++|+....+ ..|.+
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~--~~~~~~~~~----~~~V~~l~fsp-g~~L~S~s~D---------~~v~l 83 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQ--VEVVIKLED----RSAIKEMRFVK-GIYLVVINAK---------DTVYV 83 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTT--CEEEEECSS----CCCEEEEEEET-TTEEEEEETT---------CEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCC--cEEEEEcCC----CCCEEEEEEcC-CCEEEEEECc---------CeEEE
Confidence 345555544 4555666778899999875 433222222 23456778999 8865555432 58899
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE---------ecCCC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC---------VAGFD 296 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~---------~~~~~ 296 (732)
+|+.+++ ..........+...+|||||++|+.... ...|.++|+. +++...... +.+..
T Consensus 84 Wd~~~~~---~~~~~~~~~~V~~v~~sp~g~~l~sgs~--------dg~V~lwd~~-~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 84 LSLYSQK---VLTTVFVPGKITSIDTDASLDWMLIGLQ--------NGSMIVYDID-RDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp EETTTCS---EEEEEECSSCEEEEECCTTCSEEEEEET--------TSCEEEEETT-TTEEEEEEECCHHHHHTCSSSCC
T ss_pred EECCCCc---EEEEEcCCCCEEEEEECCCCCEEEEEcC--------CCcEEEEECC-CCccccceeccccccccccccCC
Confidence 9998876 3322223445677899999999876552 2348899998 665432221 12222
Q ss_pred CCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCC-------ce---eecccceeeeeec
Q 004735 297 PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-------LW---VFGINSYEIIQSH 365 (732)
Q Consensus 297 ~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~-------~w---~~~~~~~~~~~~~ 365 (732)
..+..++|+|++. ++.+... .+ .+ ++|+.+++.............+ .+ ......+.|.+
T Consensus 152 ----~~V~sl~~sp~~~~~l~~g~~-dg--~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-- 221 (902)
T 2oaj_A 152 ----SPIVSIQWNPRDIGTVLISYE-YV--TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-- 221 (902)
T ss_dssp ----CCCCEEEEETTEEEEEEEECS-SC--EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--
T ss_pred ----CCeEEEEEccCCCCEEEEEeC-CC--cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--
Confidence 4677889999754 5555544 34 35 7788887654433211000000 00 01123445653
Q ss_pred CCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 366 GEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 366 ~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
+++ ++++...++.-.|| |..+++..
T Consensus 222 -dg~-~lasgs~Dg~i~lW--d~~~g~~~ 246 (902)
T 2oaj_A 222 -NSL-HIITIHEDNSLVFW--DANSGHMI 246 (902)
T ss_dssp -TSS-EEEEEETTCCEEEE--ETTTCCEE
T ss_pred -CCC-EEEEEECCCeEEEE--ECCCCcEE
Confidence 555 45555667765555 77666643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0004 Score=74.46 Aligned_cols=210 Identities=8% Similarity=-0.034 Sum_probs=115.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~ 166 (732)
..+.+++|+| .+.+..+-. .++...+|.......+.... .....-+...+.+..++++ ..+++...++.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~ 134 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGS---DQGVIKIWNLKEIIVGEVYS------SSLTYDCSSTVTQITMIPNFDAFAVSSKDGQ 134 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEE---TTSEEEEEEHHHHHTTCCCS------CSEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CceEEEEECCCCCCEEEEec---CCceEEEeECcccccCcccc------eeeeccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 4567899998 666555554 35777777664310001000 0001112233445555543 45566667788
Q ss_pred EEEEeCC---CCCCCceecCCC---------C--CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 167 LYKHSID---SKDSSPLPITPD---------Y--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 167 l~~~d~~---~~~~~~~~lt~~---------~--~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
|.++|+. . +........ + ...........++|||+.++....+ ..|.++|+.+++
T Consensus 135 i~vwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~ 203 (437)
T 3gre_A 135 IIVLKVNHYQQ--ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL---------SRVIIFDIRTLE 203 (437)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT---------SEEEEEETTTCC
T ss_pred EEEEEeccccC--CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCe
Confidence 8888874 2 322211110 0 0001111122367888876655442 589999998876
Q ss_pred ccccEE-ccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEec-CCCCCccccCcCc--
Q 004735 233 IQEPKV-LVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDPTIVESPTEP-- 306 (732)
Q Consensus 233 ~~~~~~-lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~-~~~~~~~~~~~~~-- 306 (732)
... +.. ....+....|||||+.|+..+. ...|.++|+. .++. +..+. ... ..+..+
T Consensus 204 ---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--------dg~i~iwd~~-~~~~--~~~~~~~~~----~~v~~~~~ 265 (437)
T 3gre_A 204 ---RLQIIENSPRHGAVSSICIDEECCVLILGTT--------RGIIDIWDIR-FNVL--IRSWSFGDH----APITHVEV 265 (437)
T ss_dssp ---EEEEEECCGGGCCEEEEEECTTSCEEEEEET--------TSCEEEEETT-TTEE--EEEEBCTTC----EEEEEEEE
T ss_pred ---eeEEEccCCCCCceEEEEECCCCCEEEEEcC--------CCeEEEEEcC-CccE--EEEEecCCC----CceEEEEe
Confidence 433 332 2345677899999998876652 2348999998 6654 33332 222 345555
Q ss_pred --eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE
Q 004735 307 --KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 307 --~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
.|++||++++.... . ..|.++|+.+++...
T Consensus 266 ~~~~s~~~~~l~s~~~-d--g~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSS-K--TFLTIWNFVKGHCQY 297 (437)
T ss_dssp CTTTCTTEEEEEEEST-T--EEEEEEETTTTEEEE
T ss_pred ccccCCCccEEEEEcC-C--CcEEEEEcCCCcEEE
Confidence 55567765545433 2 357777888776543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00011 Score=86.75 Aligned_cols=198 Identities=10% Similarity=-0.032 Sum_probs=116.4
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
....+|||||++|+....+ ..|.+++..+++ ..........+...+||| |++|+-.+ ..
T Consensus 20 V~~lafspdg~~lAsgs~D---------g~I~lw~~~~~~---~~~~~~~~~~V~~l~fsp-g~~L~S~s--------~D 78 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVT---------GEVHIYGQQQVE---VVIKLEDRSAIKEMRFVK-GIYLVVIN--------AK 78 (902)
T ss_dssp EEEEEEETTTTEEEEEETT---------SEEEEECSTTCE---EEEECSSCCCEEEEEEET-TTEEEEEE--------TT
T ss_pred cEEEEECCCCCEEEEEeCC---------CEEEEEeCCCcE---EEEEcCCCCCEEEEEEcC-CCEEEEEE--------Cc
Confidence 4567899999986655432 478888887765 433333445567789999 88777665 23
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecc-------c-c
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-------L-D 344 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-------~-~ 344 (732)
..|.++|+. +++. +..+... ..+..+.|+|||+.+++... .|. |.++|+.+++...... . .
T Consensus 79 ~~v~lWd~~-~~~~--~~~~~~~-----~~V~~v~~sp~g~~l~sgs~-dg~--V~lwd~~~~~~~~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 79 DTVYVLSLY-SQKV--LTTVFVP-----GKITSIDTDASLDWMLIGLQ-NGS--MIVYDIDRDQLSSFKLDNLQKSSFFP 147 (902)
T ss_dssp CEEEEEETT-TCSE--EEEEECS-----SCEEEEECCTTCSEEEEEET-TSC--EEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred CeEEEEECC-CCcE--EEEEcCC-----CCEEEEEECCCCCEEEEEcC-CCc--EEEEECCCCccccceecccccccccc
Confidence 458999998 6764 3333322 45678899999995555554 454 5666787776532110 0 0
Q ss_pred cccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE-EeccC------------------CCceEE
Q 004735 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIP------------------FTDIDN 405 (732)
Q Consensus 345 ~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~-~lt~~------------------~~~v~~ 405 (732)
.....+ ...+.|.+ ++..++++...++.. ++|+.+++.. .+... ...|..
T Consensus 148 ~~h~~~-----V~sl~~sp---~~~~~l~~g~~dg~v---lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~ 216 (902)
T 2oaj_A 148 AARLSP-----IVSIQWNP---RDIGTVLISYEYVTL---TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216 (902)
T ss_dssp SSCCCC-----CCEEEEET---TEEEEEEEECSSCEE---EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred ccCCCC-----eEEEEEcc---CCCCEEEEEeCCCcE---EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence 000111 22345543 444455555556654 5577776543 33221 134666
Q ss_pred e-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 406 I-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 406 ~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+ ..+++.+++.++.. ..|.++|+.+++.
T Consensus 217 v~fspdg~~lasgs~D---g~i~lWd~~~g~~ 245 (902)
T 2oaj_A 217 SLYHPNSLHIITIHED---NSLVFWDANSGHM 245 (902)
T ss_dssp EEECTTSSEEEEEETT---CCEEEEETTTCCE
T ss_pred EEEcCCCCEEEEEECC---CeEEEEECCCCcE
Confidence 6 44556666555543 3588888887764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0001 Score=75.56 Aligned_cols=234 Identities=10% Similarity=0.028 Sum_probs=119.3
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCc---eecCCCCCCCCeEeeceeecC--CCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
..+++...++.|.++|+.+ +.. ..+... .......+|+| +|+.|+....+ ..|.++|+.+
T Consensus 26 ~~lasgs~D~~v~lwd~~~--~~~~~~~~l~gH----~~~V~~v~~~~~~~~~~l~s~s~D---------~~v~iWd~~~ 90 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRN--GGQILIADLRGH----EGPVWQVAWAHPMYGNILASCSYD---------RKVIIWREEN 90 (316)
T ss_dssp CEEEEEETTTEEEEEEEET--TEEEEEEEEECC----SSCEEEEEECCGGGSSCEEEEETT---------SCEEEECCSS
T ss_pred CEEEEEeCCCeEEEEEecC--CCcEEEEEEcCC----CccEEEEEeCCCCCCCEEEEEECC---------CEEEEEECCC
Confidence 4455666788888899875 432 223332 33456778986 47775554432 4677788877
Q ss_pred CCccccEEcccCCCceeccccCCC--CCeEEEEeccCCCCCCCccEEEEEEecCCC-ceeeeEEecCCCCCccccCcCce
Q 004735 231 QNIQEPKVLVSGSDFYAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 231 ~~~~~~~~lt~~~~~~~~p~~SPD--G~~la~~~~~~~~~~~~~~~l~v~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
++......+......+...+|+|| |+.|+-.+. ...|.++|+. ++ .......+.+.. ..+..+.
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~--------D~~i~lwd~~-~~~~~~~~~~~~~h~----~~v~~~~ 157 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS--------DGAISLLTYT-GEGQWEVKKINNAHT----IGCNAVS 157 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS--------SSCEEEEEEC-SSSCEEECCBTTSSS----SCBCCCE
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC--------CCCEEEEecC-CCCCcceeeeecccc----CCcceEE
Confidence 641112223333445667899998 777765542 2337888887 44 221122223332 4567789
Q ss_pred eCCCC-----------------cEEEEEeccCCeeeEEEEeccCC-eEEEecccccccCCCceeecccceeeeeecCCC-
Q 004735 308 WSSKG-----------------ELFFVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEK- 368 (732)
Q Consensus 308 wspDg-----------------~l~~~~~~~~g~~~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~- 368 (732)
|+|++ +++.+... .+.-+|| |..++ +.+.+..... ...+. ..+.|.+ ++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-D~~v~lW--d~~~~~~~~~~~~l~~---h~~~V---~~v~~sp---~~~ 225 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGC-DNLIKLW--KEEEDGQWKEEQKLEA---HSDWV---RDVAWAP---SIG 225 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBT-TSBCCEE--EECTTSCEEEEECCBC---CSSCE---EEEECCC---CSS
T ss_pred EccccCCccccccccccCccccceEEEecC-CCeEEEE--EeCCCCccceeeeccc---CCCce---EEEEecC---CCC
Confidence 99983 33333333 4444555 44432 2222211110 11111 1233432 33
Q ss_pred --CEEEEEEEECCEEEEEEEECCC-Cc--eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 369 --NLIACSYRQNGRSYLGILDDFG-HS--LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 369 --~~l~~~s~~~g~~~ly~~~~~~-~~--~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
..++++...++.-.||.++... +. .+.+......+..+ ..+++.+++.++. ++.-.||..+
T Consensus 226 ~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~-D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG-DNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES-SSCEEEEEEC
T ss_pred CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-CCeEEEEEEC
Confidence 2466677778877777543211 11 22333334456666 3455555555543 3334455443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00012 Score=76.00 Aligned_cols=221 Identities=9% Similarity=-0.047 Sum_probs=119.3
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCC-cccccccccCCceeEEEC-CEEEEEeCC---
Q 004735 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEY-AVRTTAQEYGGGAFRIFG-DTVIFSNYK--- 163 (732)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~-~~~~~~~~~g~~~~~~~~-~~i~f~~~~--- 163 (732)
..+.++.++|.+++|....+-.+ +...|+..+ . | +.. .+|... .....+ .......+++ ++|++.+..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~-~~~~l~~~~-~-g-~~~-~~p~~~~~~~~~~--~~p~gv~~d~~g~L~v~D~g~~~ 89 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQ-PEMQVAELT-Q-D-GLI-PFPPQSGNAIITF--DTVLGIKSDGNGIVWMLDNGNQS 89 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGC-CSCSEEEEE-T-T-EEE-ESCCCCSSCCCCC--SCEEEEEECSSSEEEEEECHHHH
T ss_pred CCcceEEECCCCCEEEEeCCCCC-CceEEEEEC-C-C-Cee-cCCCcccCcccce--eEeeEEEEcCCCcEEEEcCCCCc
Confidence 36788999985567766543221 213455554 2 2 222 122110 000000 1112344454 477777644
Q ss_pred --CCeEEEEeCCCCCCC-ceecCCC--CCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE
Q 004735 164 --DQRLYKHSIDSKDSS-PLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV 238 (732)
Q Consensus 164 --~~~l~~~d~~~~~~~-~~~lt~~--~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 238 (732)
...|+++|+++ ++ .+.+... ...+.....+++++|++..+ |+.+.... ....|+++|+++++ ..+
T Consensus 90 ~~~~~i~~~d~~t--g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~-yvtd~~~~----~~~~i~v~d~~~g~---~~r 159 (343)
T 2qe8_A 90 KSVPKLVAWDTLN--NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFV-YISDPAPD----DKAALIRVDLQTGL---AAR 159 (343)
T ss_dssp TSCCEEEEEETTT--TEEEEEEECCTTTSCTTCCCCEEEEETTTTEE-EEEECCSG----GGCEEEEEETTTCC---EEE
T ss_pred CCCCeEEEEECCC--CeEEEEEECChhhcccccccceEEEecCCCEE-EEEcCccC----CCCeEEEEECCCCC---EEE
Confidence 46899999987 55 3333321 01112344778899987764 55442100 13689999998776 444
Q ss_pred cccCC------------------------------CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec--CCCce
Q 004735 239 LVSGS------------------------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDV 286 (732)
Q Consensus 239 lt~~~------------------------------~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~--~~g~~ 286 (732)
+..+. ....+.+|||||+.|++.... ...||.++.+ .++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-------~~~l~~~~~~~~~~~~~ 232 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-------STSMYRIKSADLSNLQL 232 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-------CSEEEEEEHHHHTCTTC
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-------CCeEEEEEHHHhcCCCC
Confidence 32210 112457899999999887632 3468998853 12221
Q ss_pred ee------eEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 287 YK------RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 287 ~~------~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
.. .... +.. .....+++++||++|+. +. +...|.++|+++|+.+.+.
T Consensus 233 ~~~~~~~~~~~~-g~~----g~pdgia~d~~G~l~va-~~--~~~~V~~~d~~~G~~~~~~ 285 (343)
T 2qe8_A 233 TDAELGSKIERY-SEK----PICDGISIDKDHNIYVG-DL--AHSAIGVITSADRAYKLLV 285 (343)
T ss_dssp CHHHHHTTCEEE-EEC----CSCSCEEECTTCCEEEE-EG--GGTEEEEEETTTTEEEEEE
T ss_pred ChhhhhcceEec-ccC----CCCceEEECCCCCEEEE-cc--CCCeEEEEECCCCCEEEEE
Confidence 11 1111 111 34567899999976654 33 3456899998567665554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00013 Score=74.31 Aligned_cols=239 Identities=9% Similarity=0.002 Sum_probs=124.4
Q ss_pred CEEEEE-------eCCCCeEEEEeCCCCCCCceecCCCC-CCCCeEeeceeecCC-CCEEEEEEeccCCCCCCceeEEEE
Q 004735 155 DTVIFS-------NYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 155 ~~i~f~-------~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
+.+++. ...++.|+++++.+ ++.+.+.... ...........++|| |+ |++... . ..|++
T Consensus 29 g~l~~~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~-~--------~~l~~ 96 (314)
T 1pjx_A 29 GDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADM-R--------LGLLV 96 (314)
T ss_dssp SCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSE-EEEEET-T--------TEEEE
T ss_pred CCEEEEEeccccCCCCCCEEEEEeCCC--CcEEEEEecccCCCCCCCceEEEecCCCc-EEEEEC-C--------CCEEE
Confidence 356666 34566899999876 6666554310 000122356779999 65 343332 1 47999
Q ss_pred EEcCCCCccccEEc-ccCC-----CceeccccCCCCCeEEEEeccCC--------CCCCCccEEEEEEecCCCceeeeEE
Q 004735 226 IALNGQNIQEPKVL-VSGS-----DFYAFPRMDPRGERMAWIEWHHP--------NMPWDKAELWVGYISENGDVYKRVC 291 (732)
Q Consensus 226 ~d~~~~~~~~~~~l-t~~~-----~~~~~p~~SPDG~~la~~~~~~~--------~~~~~~~~l~v~d~~~~g~~~~~~~ 291 (732)
++.+ ++ .+.+ .... .......++|||+ |++...... ........|++++.+ |+... .
T Consensus 97 ~d~~-g~---~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~--~ 167 (314)
T 1pjx_A 97 VQTD-GT---FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQ--V 167 (314)
T ss_dssp EETT-SC---EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEE--E
T ss_pred EeCC-CC---EEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC--CCEEE--e
Confidence 9998 76 5555 3211 1234568899996 555542210 000112568888754 55422 2
Q ss_pred ecCCCCCccccCcCceeC----CCCcEEEEEeccCCeeeEEEEecc-CCeEEE---ecccccccCCCceeecccceeeee
Q 004735 292 VAGFDPTIVESPTEPKWS----SKGELFFVTDRKNGFWNLHKWIES-NNEVLA---IYSLDAEFSRPLWVFGINSYEIIQ 363 (732)
Q Consensus 292 ~~~~~~~~~~~~~~~~ws----pDg~l~~~~~~~~g~~~l~~~d~~-~g~~~~---l~~~~~~~~~~~w~~~~~~~~~~~ 363 (732)
.... .....+.|+ +||+.+|.++. +...|++++++ +++... +....... ... ...+.+.
T Consensus 168 ~~~~-----~~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~---p~~i~~d- 234 (314)
T 1pjx_A 168 DTAF-----QFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGG---ADGMDFD- 234 (314)
T ss_dssp EEEE-----SSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCS--SCE---EEEEEEB-
T ss_pred ccCC-----CCcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCC--CCC---CCceEEC-
Confidence 2221 233567899 99984444443 22457777765 454321 11111000 000 1223333
Q ss_pred ecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 364 SHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 364 ~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
.++.++++...++ .|+++++++++ .+.+..+...+..+ ..++++.+|+++... ..|++++++..
T Consensus 235 ---~~G~l~v~~~~~~--~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~--~~l~~~~~~~~ 300 (314)
T 1pjx_A 235 ---EDNNLLVANWGSS--HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN--NAVWKFEWQRN 300 (314)
T ss_dssp ---TTCCEEEEEETTT--EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT--TEEEEEECSSC
T ss_pred ---CCCCEEEEEcCCC--EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC--CeEEEEeCCCC
Confidence 3445665554333 68888988444 44555444455555 334555455554332 46888887653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0012 Score=66.25 Aligned_cols=276 Identities=12% Similarity=0.064 Sum_probs=143.6
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC-CCCCcccccccccCCceeEEE-CCEEEEEeCCCCeE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT-PKEYAVRTTAQEYGGGAFRIF-GDTVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~-~~~~~~~~~~~~~g~~~~~~~-~~~i~f~~~~~~~l 167 (732)
.+.++..++.+.+|+.... .+ .+++++.. + ....+. +.. .........+ ++.+++.....+.|
T Consensus 16 ~~~~i~~d~~g~l~v~~~~---~~--~v~~~d~~-~-~~~~~~~~~~--------~~~~~~i~~~~~g~l~v~~~~~~~i 80 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHK---AN--MISCINLD-G-KITEYPLPTP--------DAKVMCLTISSDGEVWFTENAANKI 80 (299)
T ss_dssp CEEEEEECTTSCEEEEETT---TT--EEEEECTT-C-CEEEEECSST--------TCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CccceEECCCCCEEEEecC---CC--cEEEEcCC-C-CeEEecCCcc--------cCceeeEEECCCCCEEEeCCCCCeE
Confidence 5677888875567766532 23 35566554 2 333222 111 0112233443 33677776666789
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc--cCCCc
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSDF 245 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt--~~~~~ 245 (732)
++++.+ +..+.+.... .........++|+|+. ++... . ...|++++. +++ ...+. .....
T Consensus 81 ~~~~~~---g~~~~~~~~~--~~~~~~~i~~~~~g~l-~v~~~-~-------~~~i~~~d~-~g~---~~~~~~~~~~~~ 142 (299)
T 2z2n_A 81 GRITKK---GIIKEYTLPN--PDSAPYGITEGPNGDI-WFTEM-N-------GNRIGRITD-DGK---IREYELPNKGSY 142 (299)
T ss_dssp EEECTT---SCEEEEECSS--TTCCEEEEEECTTSCE-EEEET-T-------TTEEEEECT-TCC---EEEEECSSTTCC
T ss_pred EEECCC---CcEEEEeCCC--cCCCceeeEECCCCCE-EEEec-C-------CceEEEECC-CCC---EEEecCCCCCCC
Confidence 999986 3444433210 1223456778999974 33322 1 158999998 555 44332 12234
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCee
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~ 325 (732)
.....++|||+ |++... ....|+++|. +|+.... ...... ..+..+.+++||++++.... ..
T Consensus 143 ~~~i~~~~~g~-l~v~~~-------~~~~i~~~~~--~g~~~~~-~~~~~~----~~~~~i~~~~~g~l~v~~~~---~~ 204 (299)
T 2z2n_A 143 PSFITLGSDNA-LWFTEN-------QNNAIGRITE--SGDITEF-KIPTPA----SGPVGITKGNDDALWFVEII---GN 204 (299)
T ss_dssp EEEEEECTTSC-EEEEET-------TTTEEEEECT--TCCEEEE-ECSSTT----CCEEEEEECTTSSEEEEETT---TT
T ss_pred CceEEEcCCCC-EEEEeC-------CCCEEEEEcC--CCcEEEe-eCCCCC----CcceeEEECCCCCEEEEccC---Cc
Confidence 45678899985 655442 2345888886 4655322 122222 34556788999887655432 34
Q ss_pred eEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccC--CCce
Q 004735 326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--FTDI 403 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~--~~~v 403 (732)
.|+++++ +++.+.+... ..... ...+.+. .++.+++... +...|++++.+ ++.+.+..+ ...+
T Consensus 205 ~i~~~~~-~g~~~~~~~~-~~~~~------~~~i~~~----~~g~l~v~~~--~~~~i~~~d~~-g~~~~~~~~~~~~~~ 269 (299)
T 2z2n_A 205 KIGRITT-SGEITEFKIP-TPNAR------PHAITAG----AGIDLWFTEW--GANKIGRLTSN-NIIEEYPIQIKSAEP 269 (299)
T ss_dssp EEEEECT-TCCEEEEECS-STTCC------EEEEEEC----STTCEEEEET--TTTEEEEEETT-TEEEEEECSSSSCCE
T ss_pred eEEEECC-CCcEEEEECC-CCCCC------ceeEEEC----CCCCEEEecc--CCceEEEECCC-CceEEEeCCCCCCcc
Confidence 6888998 6665544211 01111 1123332 3344665542 22457888884 555555322 2345
Q ss_pred EEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 404 DNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
..+..+++.+++.. . ...|+++++++++
T Consensus 270 ~~i~~~~g~l~v~~-~---~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 270 HGICFDGETIWFAM-E---CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEEECSSCEEEEE-T---TTEEEEEEEC---
T ss_pred ceEEecCCCEEEEe-c---CCcEEEEEcCccc
Confidence 55533555554443 2 2468888876654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00079 Score=69.23 Aligned_cols=148 Identities=10% Similarity=0.005 Sum_probs=81.0
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc----
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS---- 241 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~---- 241 (732)
.|+++|.++ ++........ .-....+.+++|+|+ |+ +.+.. ...|++++.++.. .....+..
T Consensus 70 ~i~~~d~~~--g~~~~~~~~~--~~~~p~gia~d~~g~-l~-v~d~~-------~~~v~~~~~~g~~-~~~~~~~~~~~~ 135 (329)
T 3fvz_A 70 TILVIDPNN--AEILQSSGKN--LFYLPHGLSIDTDGN-YW-VTDVA-------LHQVFKLDPHSKE-GPLLILGRSMQP 135 (329)
T ss_dssp CEEEECTTT--CCEEEEECTT--TCSSEEEEEECTTSC-EE-EEETT-------TTEEEEECTTCSS-CCSEEESBTTBC
T ss_pred cEEEEECCC--CeEEeccCCC--ccCCceEEEECCCCC-EE-EEECC-------CCEEEEEeCCCCe-EEEEEecccCCC
Confidence 699999876 5543322210 012335678999999 34 44322 2689999987652 00344421
Q ss_pred C--C---CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCC------CCccccCcCceeCC
Q 004735 242 G--S---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD------PTIVESPTEPKWSS 310 (732)
Q Consensus 242 ~--~---~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~------~~~~~~~~~~~wsp 310 (732)
+ . ......+++|++..|++.... ....|++++. +|+. +..+.... +.....+..++++|
T Consensus 136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~------~~~~I~~~~~--~g~~--~~~~~~~g~~~~~~~~~~~~p~gia~d~ 205 (329)
T 3fvz_A 136 GSDQNHFCQPTDVAVEPSTGAVFVSDGY------CNSRIVQFSP--SGKF--VTQWGEESSGSSPRPGQFSVPHSLALVP 205 (329)
T ss_dssp CCSTTCCSSEEEEEECTTTCCEEEEECS------SCCEEEEECT--TSCE--EEEECEECCSSSCCTTEESCEEEEEEET
T ss_pred CCCccccCCCcEEEEeCCCCeEEEEeCC------CCCeEEEEcC--CCCE--EEEeccCCCCCCCCCcccCCCcEEEEEC
Confidence 1 1 123456899944457665421 2356888884 4654 23222110 00112356778999
Q ss_pred CCcEEEEEeccCCeeeEEEEeccCCeEEE
Q 004735 311 KGELFFVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 311 Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
|+..+|+++. +..+|.++++++|+...
T Consensus 206 ~~g~l~v~d~--~~~~I~~~~~~~G~~~~ 232 (329)
T 3fvz_A 206 HLDQLCVADR--ENGRIQCFKTDTKEFVR 232 (329)
T ss_dssp TTTEEEEEET--TTTEEEEEETTTCCEEE
T ss_pred CCCEEEEEEC--CCCEEEEEECCCCcEEE
Confidence 9443344554 44578889998665443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00048 Score=73.58 Aligned_cols=240 Identities=8% Similarity=-0.018 Sum_probs=134.2
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~ 168 (732)
.+.+++|+| |+.++- -. .++...+|....+ +...... .+.....++++++. ++.+...++.++
T Consensus 149 ~V~sv~fspdg~~las-gs---~Dg~v~iWd~~~~---~~~~~~~--------~h~~~v~~~s~~~~-~l~sgs~d~~i~ 212 (420)
T 4gga_A 149 YISSVAWIKEGNYLAV-GT---SSAEVQLWDVQQQ---KRLRNMT--------SHSARVGSLSWNSY-ILSSGSRSGHIH 212 (420)
T ss_dssp CEEEEEECTTSSEEEE-EE---TTSCEEEEETTTT---EEEEEEC--------CCSSCEEEEEEETT-EEEEEETTSEEE
T ss_pred cEEEEEECCCCCEEEE-EE---CCCeEEEEEcCCC---cEEEEEe--------CCCCceEEEeeCCC-EEEEEeCCCcee
Confidence 356888998 554443 22 3466666665322 2111111 11222345666655 445555778899
Q ss_pred EEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc--ccEEcccCCCce
Q 004735 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ--EPKVLVSGSDFY 246 (732)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~lt~~~~~~ 246 (732)
+++..........+... ........|+|+|+.++....+ ..+.+++..+++.. ...........+
T Consensus 213 ~~d~~~~~~~~~~~~~h----~~~~~~~~~~~~g~~l~s~~~D---------~~v~i~~~~~~~~~~~~~~~~~~~~~~V 279 (420)
T 4gga_A 213 HHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRHLASGGND---------NLVNVWPSAPGEGGWVPLQTFTQHQGAV 279 (420)
T ss_dssp EEETTSSSCEEEEEECC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred EeeecccceeeEEeccc----ccceeeeeecCCCCeeeeeecc---------ccceEEeeccccccceeeeeecccCCce
Confidence 99987510112223322 2334566799999987665442 46777787765410 012223334456
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 325 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~ 325 (732)
....|+|++..++.+.... ....|.++|+. +|+. ...+... ..+....|+++++ ++..+.. ...
T Consensus 280 ~~~~~~p~~~~~la~~~gs-----~D~~I~iwd~~-t~~~--~~~~~~~-----~~v~~~~~~~~~~~lv~~sg~--~d~ 344 (420)
T 4gga_A 280 KAVAWCPWQSNVLATGGGT-----SDRHIRIWNVC-SGAC--LSAVDAH-----SQVCSILWSPHYKELISGHGF--AQN 344 (420)
T ss_dssp EEEEECTTCTTEEEEEECT-----TTCEEEEEETT-TTEE--EEEEECS-----SCEEEEEEETTTTEEEEEECT--TTC
T ss_pred eeeeeCCCcccEEEEEeec-----CCCEEEEEeCC-cccc--ceeeccc-----cceeeeeecCCCCeEEEEEec--CCC
Confidence 6788999888887664221 23458999998 7765 3333333 3456788999999 6555432 234
Q ss_pred eEEEEeccCCeEEE-ecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 326 NLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 326 ~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
.|.++|..+++... +......+.. +.|.+ ++.. +++...|+.-.||.+
T Consensus 345 ~I~iwd~~~~~~v~~l~gH~~~V~~---------l~~sp---dg~~-l~S~s~D~tvriWdv 393 (420)
T 4gga_A 345 QLVIWKYPTMAKVAELKGHTSRVLS---------LTMSP---DGAT-VASAAADETLRLWRC 393 (420)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEE---------EEECT---TSSC-EEEEETTTEEEEECC
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEE---------EEEcC---CCCE-EEEEecCCeEEEEEC
Confidence 57777887776443 3322222222 33442 5554 456667888778754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00022 Score=69.38 Aligned_cols=193 Identities=9% Similarity=-0.007 Sum_probs=115.2
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEEe
Q 004735 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (732)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d 171 (732)
.++.++ ++.+|..... .|+ |...+.++|...+.+++. .+-+....+.+++|+.....++.++++|
T Consensus 58 qGL~~~-~~~Ly~stG~---~g~--v~~iD~~Tgkv~~~~l~~---------~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGH---QGT--LRQLSLESAQPVWMERLG---------NIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEE-TTEEEEEETT---TTE--EEECCSSCSSCSEEEECT---------TCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred ceEEEE-CCEEEEEcCC---CCE--EEEEECCCCcEEeEECCC---------CcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 678888 8888877653 344 677788776433333221 1112235667889999988889999999
Q ss_pred CCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc--cCC---Cce
Q 004735 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGS---DFY 246 (732)
Q Consensus 172 ~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt--~~~---~~~ 246 (732)
.++. ...+.+.... ....+++||++| |+++ . ...|+++|.++.+. ...+. ... .+.
T Consensus 123 ~~Tl-~~~~ti~~~~-------eGwGLt~Dg~~L-~vSd-G-------s~~l~~iDp~T~~v--~~~I~V~~~g~~v~~l 183 (268)
T 3nok_A 123 GMPP-QRERTTRYSG-------EGWGLCYWNGKL-VRSD-G-------GTMLTFHEPDGFAL--VGAVQVKLRGQPVELI 183 (268)
T ss_dssp TTTT-EEEEEEECSS-------CCCCEEEETTEE-EEEC-S-------SSEEEEECTTTCCE--EEEEECEETTEECCCE
T ss_pred CCcC-cEEEEEeCCC-------ceeEEecCCCEE-EEEC-C-------CCEEEEEcCCCCeE--EEEEEeCCCCcccccc
Confidence 9872 2233444321 112356789875 4443 2 26899999998762 22332 221 123
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecC---------CCCCccccCcCceeCCCCcEEEE
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG---------FDPTIVESPTEPKWSSKGELFFV 317 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~wspDg~l~~~ 317 (732)
+...|. || +|+... |...+|.++|.+ +|++.....+.+ .+.. .....++|+|+++.+|+
T Consensus 184 NeLe~~-dG-~lyanv-------w~s~~I~vIDp~-TG~V~~~Idl~~L~~~~~~~~~~~~--~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 184 NELECA-NG-VIYANI-------WHSSDVLEIDPA-TGTVVGVIDASALTRAVAGQVTNPE--AVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp EEEEEE-TT-EEEEEE-------TTCSEEEEECTT-TCBEEEEEECHHHHHHHTTTCCCTT--CCEEEEEECTTTCCEEE
T ss_pred cccEEe-CC-EEEEEE-------CCCCeEEEEeCC-CCcEEEEEECCCCcccccccccCcC--CceEEEEEcCCCCEEEE
Confidence 345665 77 465433 234579999998 888754443321 1101 24567899999884445
Q ss_pred EeccCCeeeEEEEec
Q 004735 318 TDRKNGFWNLHKWIE 332 (732)
Q Consensus 318 ~~~~~g~~~l~~~d~ 332 (732)
+.. -|..||.+.+
T Consensus 252 TGK--~Wp~~~ev~~ 264 (268)
T 3nok_A 252 TGK--LWPRLFEVRL 264 (268)
T ss_dssp EET--TCSEEEEEEE
T ss_pred eCC--CCCceEEEEE
Confidence 543 4667887654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0001 Score=75.54 Aligned_cols=249 Identities=9% Similarity=-0.048 Sum_probs=127.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC---CEEEEEeCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG---DTVIFSNYKD 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~---~~i~f~~~~~ 164 (732)
..+..++|+| |+.++--. .++...+|....+ +...+.. -.-|...+.+..++. +.++++...+
T Consensus 14 ~~V~~v~~s~~g~~lasgs----~D~~v~lwd~~~~---~~~~~~~------l~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCS----SDRSVKIFDVRNG---GQILIAD------LRGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp CCEEEEEECGGGCEEEEEE----TTTEEEEEEEETT---EEEEEEE------EECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred CeEEEeeEcCCCCEEEEEe----CCCeEEEEEecCC---CcEEEEE------EcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 3456889998 66554332 3467667765322 1111100 001122233444432 3556666678
Q ss_pred CeEEEEeCCCCCCCcee---cCCCCCCCCeEeeceeecCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE--
Q 004735 165 QRLYKHSIDSKDSSPLP---ITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-- 237 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~---lt~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-- 237 (732)
+.|.++|+.+ +..+. +... .......+|+|+ |+.|+.... + ..|.++++.++.. ..
T Consensus 81 ~~v~iWd~~~--~~~~~~~~~~~h----~~~V~~v~~~p~~~g~~lasgs~-D--------~~i~lwd~~~~~~--~~~~ 143 (316)
T 3bg1_A 81 RKVIIWREEN--GTWEKSHEHAGH----DSSVNSVCWAPHDYGLILACGSS-D--------GAISLLTYTGEGQ--WEVK 143 (316)
T ss_dssp SCEEEECCSS--SCCCEEEEECCC----SSCCCEEEECCTTTCSCEEEECS-S--------SCEEEEEECSSSC--EEEC
T ss_pred CEEEEEECCC--CcceEEEEccCC----CCceEEEEECCCCCCcEEEEEcC-C--------CCEEEEecCCCCC--ccee
Confidence 8899999986 43222 2222 234567789998 666544433 2 4567777766530 11
Q ss_pred E-cccCCCceeccccCCCC-----------------CeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCc
Q 004735 238 V-LVSGSDFYAFPRMDPRG-----------------ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (732)
Q Consensus 238 ~-lt~~~~~~~~p~~SPDG-----------------~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~ 299 (732)
. +...........|+|++ +.|+-.+ . ...|.++|+...+.......+.+..
T Consensus 144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs--~------D~~v~lWd~~~~~~~~~~~~l~~h~--- 212 (316)
T 3bg1_A 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG--C------DNLIKLWKEEEDGQWKEEQKLEAHS--- 212 (316)
T ss_dssp CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB--T------TSBCCEEEECTTSCEEEEECCBCCS---
T ss_pred eeeccccCCcceEEEccccCCccccccccccCccccceEEEec--C------CCeEEEEEeCCCCccceeeecccCC---
Confidence 1 11222334567888873 4554322 1 2336777776223232334445543
Q ss_pred cccCcCceeCCCC----cEEEEEeccCCeeeEEEEeccC---Ce--EEEecccccccCCCceeecccceeeeeecCCCCE
Q 004735 300 VESPTEPKWSSKG----ELFFVTDRKNGFWNLHKWIESN---NE--VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL 370 (732)
Q Consensus 300 ~~~~~~~~wspDg----~l~~~~~~~~g~~~l~~~d~~~---g~--~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 370 (732)
..+..+.|+||+ +++++... .+.-.|| ++.+ ++ .+.+... ....| .+.|.+ +++.
T Consensus 213 -~~V~~v~~sp~~~~~~~~las~s~-D~~v~iw--~~~~~~~~~~~~~~~~~~----~~~v~-----~v~~sp---~g~~ 276 (316)
T 3bg1_A 213 -DWVRDVAWAPSIGLPTSTIASCSQ-DGRVFIW--TCDDASSNTWSPKLLHKF----NDVVW-----HVSWSI---TANI 276 (316)
T ss_dssp -SCEEEEECCCCSSCSCCEEEEEET-TCEEEEE--ECSSTTCCCCBCCEEEEC----SSCEE-----EEEECT---TTCC
T ss_pred -CceEEEEecCCCCCCCceEEEEcC-CCeEEEE--EccCccccchhhhhhhcC----CCcEE-----EEEEcC---CCCE
Confidence 557788999997 55555554 5655555 4443 11 1122111 12222 234442 5554
Q ss_pred EEEEEEECCEEEEEEEECCCCceEEe
Q 004735 371 IACSYRQNGRSYLGILDDFGHSLSLL 396 (732)
Q Consensus 371 l~~~s~~~g~~~ly~~~~~~~~~~~l 396 (732)
+++...++.-+||..+.. ++++++
T Consensus 277 -las~~~D~~v~lw~~~~~-g~~~~~ 300 (316)
T 3bg1_A 277 -LAVSGGDNKVTLWKESVD-GQWVCI 300 (316)
T ss_dssp -EEEEESSSCEEEEEECTT-SCEEEE
T ss_pred -EEEEcCCCeEEEEEECCC-CcEEEe
Confidence 455566888888877654 344433
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00083 Score=67.84 Aligned_cols=224 Identities=12% Similarity=0.049 Sum_probs=120.4
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+..+++...++.|.++|+.+ +... .+... ........|+|+|+.|+....+ ..|.++++.....
T Consensus 29 ~~~l~s~~~dg~v~vw~~~~--~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d---------g~i~~~~~~~~~~ 93 (313)
T 3odt_A 29 DSKVASVSRDGTVRLWSKDD--QWLGTVVYTG----QGFLNSVCYDSEKELLLFGGKD---------TMINGVPLFATSG 93 (313)
T ss_dssp TTEEEEEETTSEEEEEEESS--SEEEEEEEEC----SSCEEEEEEETTTTEEEEEETT---------SCEEEEETTCCTT
T ss_pred CCEEEEEEcCCcEEEEECCC--CEEEEEeecC----CccEEEEEECCCCCEEEEecCC---------CeEEEEEeeecCC
Confidence 33455666788899999976 4332 23222 3345677899999987666542 4566677665320
Q ss_pred -cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC-C
Q 004735 234 -QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-K 311 (732)
Q Consensus 234 -~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp-D 311 (732)
.....+...........| |++.|+..+ ....|.++| . ++. ...+.... ..+....|.| +
T Consensus 94 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~--------~d~~i~~~d-~--~~~--~~~~~~~~----~~v~~~~~~~~~ 154 (313)
T 3odt_A 94 EDPLYTLIGHQGNVCSLSF--QDGVVISGS--------WDKTAKVWK-E--GSL--VYNLQAHN----ASVWDAKVVSFS 154 (313)
T ss_dssp SCC-CEECCCSSCEEEEEE--ETTEEEEEE--------TTSEEEEEE-T--TEE--EEEEECCS----SCEEEEEEEETT
T ss_pred CCcccchhhcccCEEEEEe--cCCEEEEEe--------CCCCEEEEc-C--CcE--EEecccCC----CceeEEEEccCC
Confidence 002223333333444455 677776655 234588887 2 322 34444443 5566778888 7
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEecc-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 390 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~ 390 (732)
++++++... .+. |..+|. ....+.+.. ...... .+.|.+ ++. +++...++. |+++++.+
T Consensus 155 ~~~l~~~~~-d~~--i~i~d~-~~~~~~~~~~~~~~i~---------~~~~~~---~~~--~~~~~~dg~--i~i~d~~~ 214 (313)
T 3odt_A 155 ENKFLTASA-DKT--IKLWQN-DKVIKTFSGIHNDVVR---------HLAVVD---DGH--FISCSNDGL--IKLVDMHT 214 (313)
T ss_dssp TTEEEEEET-TSC--EEEEET-TEEEEEECSSCSSCEE---------EEEEEE---TTE--EEEEETTSE--EEEEETTT
T ss_pred CCEEEEEEC-CCC--EEEEec-CceEEEEeccCcccEE---------EEEEcC---CCe--EEEccCCCe--EEEEECCc
Confidence 775555544 454 444552 222222322 221222 233432 444 445555665 55557776
Q ss_pred Cce-EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 391 HSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 391 ~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
++. ..+......+..+ ..+++. ++.++. ...|+++|+.+++.
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~---dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 215 GDVLRTYEGHESFVYCIKLLPNGD-IVSCGE---DRTVRIWSKENGSL 258 (313)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSC-EEEEET---TSEEEEECTTTCCE
T ss_pred hhhhhhhhcCCceEEEEEEecCCC-EEEEec---CCEEEEEECCCCce
Confidence 654 4455455667777 344443 334332 24688888887764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00056 Score=76.70 Aligned_cols=206 Identities=13% Similarity=0.103 Sum_probs=125.0
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~ 168 (732)
.+.++.+++ ++.|||.+... + .|++...+++ ..+.+.... +....+.++.+.++.|++++...+.|.
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~---~--~I~r~~~~g~-~~~~v~~~~------~~~p~GlAvD~~~~~lY~tD~~~~~I~ 417 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEV---R--AIRRSFIDGS-GSQFVVTAQ------IAHPDGIAVDWVARNLYWTDTGTDRIE 417 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTT---T--EEEEEETTSC-SCEEEECSS------CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred ccEEEEEEcCCCeEEEEeCCC---C--eEEEEEcCCC-ccEEEEECC------CCCcCceEEecccCcEEEEeCCCCcEE
Confidence 345778898 89999998632 3 4677766522 233333221 111223344444778999988888999
Q ss_pred EEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-CCCcee
Q 004735 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYA 247 (732)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~~~~~~ 247 (732)
+.++++ ...+.|.... -..-.+.++.|....|+++.... ...|++.++++.. .+.+.. .-..-.
T Consensus 418 v~~~~G--~~~~~l~~~~---l~~P~~iavdp~~G~ly~tD~g~-------~~~I~r~~~dG~~---~~~l~~~~l~~P~ 482 (619)
T 3s94_A 418 VTRLNG--TMRKILISED---LEEPRAIVLDPMVGYMYWTDWGE-------IPKIERAALDGSD---RVVLVNTSLGWPN 482 (619)
T ss_dssp EEETTS--CSCEEEECTT---CCSEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCS---CEEEECSSCSCEE
T ss_pred EEeCCC--CeEEEEEECC---CCCeeeEEEEcCCCcEEEecCCC-------CCEEEEEccCCCc---cEEEEeCCCCCCe
Confidence 999986 5455554321 22336778999866666654321 2589999999866 555543 234456
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeE
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l 327 (732)
+.++++++++|+|... ....|+.++++ +... ..++.+.- ..+..++...| .||| ++. +...|
T Consensus 483 GlalD~~~~~LY~aD~-------~~~~I~~~~~d-G~~~--~~~~~~~l----~~P~glav~~~-~ly~-tD~--~~~~I 544 (619)
T 3s94_A 483 GLALDYDEGKIYWGDA-------KTDKIEVMNTD-GTGR--RVLVEDKI----PHIFGFTLLGD-YVYW-TDW--QRRSI 544 (619)
T ss_dssp EEEEETTTTEEEEEET-------TTTEEEEEESS-SCCC--EEEEECCC----CSSCCEEEETT-EEEE-ECT--TSSCE
T ss_pred eeEEcccCCEEEEEEC-------CCCEEEEEecC-CCce--EEEeccCC----CCcEEEEEECC-EEEE-eec--CCCeE
Confidence 6789999999988762 23569999987 3322 22333222 33344554332 3544 444 45678
Q ss_pred EEEeccCCeEEEe
Q 004735 328 HKWIESNNEVLAI 340 (732)
Q Consensus 328 ~~~d~~~g~~~~l 340 (732)
++++..+|+.+.+
T Consensus 545 ~~~~k~~g~~~~~ 557 (619)
T 3s94_A 545 ERVHKRSAEREVI 557 (619)
T ss_dssp EEEESSSCCEEEE
T ss_pred EEEEcCCCceEEE
Confidence 8888887754433
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0014 Score=68.22 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=88.7
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.+..++++.++... ++.|+++|+.+ + ++.+..- .....-..++| +.+++..... ...|.++|
T Consensus 104 ~~v~~~~~~~~~~~--~~~i~i~d~~~--~-~~~~~~~----~~~~~~~~~s~--~~la~~sg~~-------~g~v~iwd 165 (355)
T 3vu4_A 104 KDLFLSREFIVVSY--GDVISVFKFGN--P-WKRITDD----IRFGGVCEFSN--GLLVYSNEFN-------LGQIHITK 165 (355)
T ss_dssp EEEEECSSEEEEEE--TTEEEEEESST--T-CCBSSCC----EEEEEEEEEET--TEEEEEESSC-------TTCEEEEE
T ss_pred EEEEEcCCEEEEEE--cCEEEEEECCC--C-ceeeEEe----ccCCceEEEEc--cEEEEeCCCc-------CcEEEEEE
Confidence 44556666666653 56799999985 3 2333322 11223345677 6666652322 14678888
Q ss_pred cCCCCc-------------cc-cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccE-EEEEEecCCCceeeeEEe
Q 004735 228 LNGQNI-------------QE-PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE-LWVGYISENGDVYKRVCV 292 (732)
Q Consensus 228 ~~~~~~-------------~~-~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~-l~v~d~~~~g~~~~~~~~ 292 (732)
+.+++. .+ ...+......+...+|||||++|+-.+. ... |.++|+. +|+. +..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~--------d~~~v~iwd~~-~~~~--~~~~ 234 (355)
T 3vu4_A 166 LQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ--------DGTIIRVFKTE-DGVL--VREF 234 (355)
T ss_dssp CCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--------TCSEEEEEETT-TCCE--EEEE
T ss_pred CCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--------CCCEEEEEECC-CCcE--EEEE
Confidence 876420 00 2334444456677899999999887662 233 8888998 6765 4445
Q ss_pred c-C-CCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC
Q 004735 293 A-G-FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 293 ~-~-~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
. + .. ..+..+.|+|||+++++... .+.-+|| |+..
T Consensus 235 ~~g~h~----~~v~~~~~s~~~~~l~s~s~-d~~v~iw--~~~~ 271 (355)
T 3vu4_A 235 RRGLDR----ADVVDMKWSTDGSKLAVVSD-KWTLHVF--EIFN 271 (355)
T ss_dssp ECTTCC----SCEEEEEECTTSCEEEEEET-TCEEEEE--ESSC
T ss_pred EcCCCC----CcEEEEEECCCCCEEEEEEC-CCEEEEE--EccC
Confidence 4 3 33 56788999999995545544 4554554 5443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0031 Score=61.61 Aligned_cols=208 Identities=11% Similarity=0.050 Sum_probs=113.9
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
.....+|+|+++.|+++.+.. ..|+.+|++ +++ .+.+. .+..-..+.++.+||+ ++ ++..+
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~--------~~I~~ld~~-g~v--~~~i~l~g~~D~EGIa~~~~g~-~~-vs~E~----- 89 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKP--------AAIVEMTTN-GDL--IRTIPLDFVKDLETIEYIGDNQ-FV-ISDER----- 89 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETT--------EEEEEEETT-CCE--EEEEECSSCSSEEEEEECSTTE-EE-EEETT-----
T ss_pred CcceeEEeCCCCEEEEEECCC--------CeEEEEeCC-CCE--EEEEecCCCCChHHeEEeCCCE-EE-EEECC-----
Confidence 357788999999887777643 689999998 552 44443 2323344567788875 43 43222
Q ss_pred CccEEEEEEecCCCceeeeEEec--C--CCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEe--ccCCeEEEeccc
Q 004735 271 DKAELWVGYISENGDVYKRVCVA--G--FDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSL 343 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~~~~--~--~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d--~~~g~~~~l~~~ 343 (732)
..+|+++++...++........ - .... .....++|+|+++ ||....+ ....||.++ +.+...+.+. .
T Consensus 90 -~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N--~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~~-~ 163 (255)
T 3qqz_A 90 -DYAIYVISLTPNSEVKILKKIKIPLQESPTN--CGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHISK-D 163 (255)
T ss_dssp -TTEEEEEEECTTCCEEEEEEEECCCSSCCCS--SCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEEE-C
T ss_pred -CCcEEEEEcCCCCeeeeeeeecccccccccc--CCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeeec-c
Confidence 3469999987455422222221 1 1112 4567899999987 6665544 556799887 2222222221 1
Q ss_pred ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEe--ccCC-------CceEEe-eEeCCEE
Q 004735 344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL--DIPF-------TDIDNI-TLGNDCL 413 (732)
Q Consensus 344 ~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~l--t~~~-------~~v~~~-~~~~~~~ 413 (732)
. .........+.+.+.+-+ ..+++|+.+... ..|..+|.++..+..+ ..+. .....+ .++++.
T Consensus 164 ~-~~~~~~~~~d~S~l~~dp---~tg~lliLS~~s--~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~- 236 (255)
T 3qqz_A 164 K-ALQRQFTLDDVSGAEFNQ---QKNTLLVLSHES--RALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN- 236 (255)
T ss_dssp H-HHHHTCCSSCCCEEEEET---TTTEEEEEETTT--TEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-
T ss_pred h-hhccccccCCceeEEEcC---CCCeEEEEECCC--CeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-
Confidence 0 000000011223444443 566788887543 5678888887644433 3221 133555 344454
Q ss_pred EEEEeCCCCCcEEEEEEcCC
Q 004735 414 FVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 414 ~~~~~~~~~~~~ly~~dl~~ 433 (732)
+|+.+.+ ..+|++....
T Consensus 237 lyIvsE~---n~~y~f~~~~ 253 (255)
T 3qqz_A 237 IYIVSEP---NRFYRFTPQS 253 (255)
T ss_dssp EEEEETT---TEEEEEEC--
T ss_pred EEEEcCC---ceEEEEEecC
Confidence 5555544 4788886543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0018 Score=64.99 Aligned_cols=274 Identities=10% Similarity=0.050 Sum_probs=141.1
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-CEEEEEeCCCCeE
Q 004735 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-~~i~f~~~~~~~l 167 (732)
..+.++..++.+.+|+.... .+ .+.+++.. | +...+.... . .........+. +.+++.....+.|
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~---~~--~v~~~~~~-~-~~~~~~~~~-~------~~~~~~i~~~~~g~l~v~~~~~~~v 85 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHK---AN--KISSLDQS-G-RIKEFEVPT-P------DAKVMCLIVSSLGDIWFTENGANKI 85 (300)
T ss_dssp CCEEEEEECTTSCEEEEETT---TT--EEEEECTT-S-CEEEEECSS-T------TCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CCcceeeECCCCCEEEEcCC---CC--eEEEECCC-C-ceEEEECCC-C------CCcceeEEECCCCCEEEEecCCCeE
Confidence 35667888875567776542 23 35555554 2 332221110 0 00112334443 3677776656789
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc--cCCCc
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGSDF 245 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt--~~~~~ 245 (732)
+++|.+ ++.+.+.... .........++|+|+. ++. ... ...|++++.+ ++ ...+. .....
T Consensus 86 ~~~d~~---g~~~~~~~~~--~~~~~~~i~~~~~g~l-~v~-~~~-------~~~i~~~~~~-g~---~~~~~~~~~~~~ 147 (300)
T 2qc5_A 86 GKLSKK---GGFTEYPLPQ--PDSGPYGITEGLNGDI-WFT-QLN-------GDRIGKLTAD-GT---IYEYDLPNKGSY 147 (300)
T ss_dssp EEECTT---SCEEEEECSS--TTCCEEEEEECSTTCE-EEE-ETT-------TTEEEEECTT-SC---EEEEECSSTTCC
T ss_pred EEECCC---CCeEEecCCC--CCCCCccceECCCCCE-EEE-ccC-------CCeEEEECCC-CC---EEEccCCCCCCC
Confidence 999987 3334332211 0233456778899984 333 321 1589999988 55 44332 22234
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCee
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~ 325 (732)
.....++|||+ |++.. . ....|++++. +|+.... ...... ..+..+.+++||++++.... ..
T Consensus 148 ~~~i~~d~~g~-l~v~~-~------~~~~i~~~~~--~g~~~~~-~~~~~~----~~~~~i~~d~~g~l~v~~~~---~~ 209 (300)
T 2qc5_A 148 PAFITLGSDNA-LWFTE-N------QNNSIGRITN--TGKLEEY-PLPTNA----AAPVGITSGNDGALWFVEIM---GN 209 (300)
T ss_dssp EEEEEECTTSS-EEEEE-T------TTTEEEEECT--TCCEEEE-ECSSTT----CCEEEEEECTTSSEEEEETT---TT
T ss_pred ceeEEECCCCC-EEEEe-c------CCCeEEEECC--CCcEEEe-eCCCCC----CCcceEEECCCCCEEEEccC---CC
Confidence 45667899998 65544 2 1345888886 3555322 122222 34567788899887665432 33
Q ss_pred eEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccC--CCce
Q 004735 326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--FTDI 403 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~--~~~v 403 (732)
.|+++++ +++...+... .....| ..+.+. .++.|+++.. +...|++++.+ ++.+....+ ...+
T Consensus 210 ~i~~~~~-~g~~~~~~~~-~~~~~~------~~i~~d----~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~~~~~~~ 274 (300)
T 2qc5_A 210 KIGRITT-TGEISEYDIP-TPNARP------HAITAG----KNSEIWFTEW--GANQIGRITND-NTIQEYQLQTENAEP 274 (300)
T ss_dssp EEEEECT-TCCEEEEECS-STTCCE------EEEEEC----STTCEEEEET--TTTEEEEECTT-SCEEEEECCSTTCCC
T ss_pred EEEEEcC-CCcEEEEECC-CCCCCc------eEEEEC----CCCCEEEecc--CCCeEEEECCC-CcEEEEECCccCCcc
Confidence 5888888 5554443211 011111 122332 2344665542 23467888874 555544332 2334
Q ss_pred EEee-EeCCEEEEEEeCCCCCcEEEEEEcC
Q 004735 404 DNIT-LGNDCLFVEGASGVEPSSVAKVTLD 432 (732)
Q Consensus 404 ~~~~-~~~~~~~~~~~~~~~~~~ly~~dl~ 432 (732)
..+. .+++.+ +++.. . .|+++|++
T Consensus 275 ~~i~~~~~g~l-~v~~~--~--~i~~~~p~ 299 (300)
T 2qc5_A 275 HGITFGKDGSV-WFALK--C--KIGKLNLN 299 (300)
T ss_dssp CCEEECTTSCE-EEECS--S--EEEEEEEC
T ss_pred ceeEeCCCCCE-EEEcc--C--ceEEeCCC
Confidence 4442 334443 34432 2 77777653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0003 Score=67.83 Aligned_cols=201 Identities=10% Similarity=-0.025 Sum_probs=111.3
Q ss_pred eEEECCEEEEEeCCC--CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 150 FRIFGDTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~--~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
+.++++.++++.... +.|.++|+++ ++..+-...+ . ++..-...++|++|+...+. .+.++++|
T Consensus 26 L~~~~~~LyestG~~g~S~v~~vD~~t--gkv~~~~~l~---~-~~fgeGi~~~~~~ly~ltw~--------~~~v~v~D 91 (243)
T 3mbr_X 26 LFYLRGHLYESTGETGRSSVRKVDLET--GRILQRAEVP---P-PYFGAGIVAWRDRLIQLTWR--------NHEGFVYD 91 (243)
T ss_dssp EEEETTEEEEEECCTTSCEEEEEETTT--CCEEEEEECC---T-TCCEEEEEEETTEEEEEESS--------SSEEEEEE
T ss_pred EEEECCEEEEECCCCCCceEEEEECCC--CCEEEEEeCC---C-CcceeEEEEeCCEEEEEEee--------CCEEEEEE
Confidence 345678888887665 4899999998 6553322211 1 11112245568886665442 37999999
Q ss_pred cCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
.++.+. ...+..+. .+-.+++||++|+ ++ +. ..+|+++|.+ +.+........... .-...+..+.
T Consensus 92 ~~tl~~--~~ti~~~~---~Gwglt~dg~~L~-vS-dg------s~~l~~iDp~-t~~~~~~I~V~~~g-~~~~~lNeLe 156 (243)
T 3mbr_X 92 LATLTP--RARFRYPG---EGWALTSDDSHLY-MS-DG------TAVIRKLDPD-TLQQVGSIKVTAGG-RPLDNLNELE 156 (243)
T ss_dssp TTTTEE--EEEEECSS---CCCEEEECSSCEE-EE-CS------SSEEEEECTT-TCCEEEEEECEETT-EECCCEEEEE
T ss_pred CCcCcE--EEEEeCCC---CceEEeeCCCEEE-EE-CC------CCeEEEEeCC-CCeEEEEEEEccCC-cccccceeeE
Confidence 998762 33343322 1234578998874 55 32 3469999988 66553222222111 0001233456
Q ss_pred eCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccc---cC---CCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 308 WSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAE---FS---RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 308 wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~---~~---~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
|. ||+|| .... ....|.++|+++|++........- .. .+.- .-.+.+++.+ ++++||++. .-++
T Consensus 157 ~~-~G~ly-anvw--~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~-~vlNGIA~d~---~~~~lfVTG--K~wp 226 (243)
T 3mbr_X 157 WV-NGELL-ANVW--LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTN-DVLNGIAFDA---EHDRLFVTG--KRWP 226 (243)
T ss_dssp EE-TTEEE-EEET--TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTS-SCEEEEEEET---TTTEEEEEE--TTCS
T ss_pred Ee-CCEEE-EEEC--CCCeEEEEECCCCCEEEEEECCcCccccccccCCcC-CceEEEEEcC---CCCEEEEEC--CCCC
Confidence 65 77755 3333 234799999999987654422110 00 0100 0113344543 667777665 4567
Q ss_pred EEEEEECC
Q 004735 382 YLGILDDF 389 (732)
Q Consensus 382 ~ly~~~~~ 389 (732)
.||.+.+.
T Consensus 227 ~~~~v~~~ 234 (243)
T 3mbr_X 227 MLYEIRLT 234 (243)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEe
Confidence 88877653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0016 Score=65.18 Aligned_cols=231 Identities=12% Similarity=0.059 Sum_probs=120.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCC--CCCCeEeeceee-cCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIF-DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
.+++....++.|++++.++ ...+.+.... ..........++ +++|+ |++..... ...|++++.++..
T Consensus 42 ~l~v~~~~~~~i~~~d~~g--~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~-------~~~i~~~d~~g~~ 111 (286)
T 1q7f_A 42 DIIVADTNNHRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSP-------THQIQIYNQYGQF 111 (286)
T ss_dssp CEEEEEGGGTEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGG-------GCEEEEECTTSCE
T ss_pred CEEEEECCCCEEEEECCCC--cEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCC-------CCEEEEECCCCcE
Confidence 5666766677899999874 4444443210 000122345667 46665 34433211 2579999965443
Q ss_pred ccccEEcccC-CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 233 IQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
.+.+... ........++|||+ |++... ....|+++|.+ |+. ...+...... ..+..+++++|
T Consensus 112 ---~~~~~~~~~~~~~~i~~~~~g~-l~v~~~-------~~~~i~~~~~~--g~~--~~~~~~~~~~--~~p~~i~~~~~ 174 (286)
T 1q7f_A 112 ---VRKFGATILQHPRGVTVDNKGR-IIVVEC-------KVMRVIIFDQN--GNV--LHKFGCSKHL--EFPNGVVVNDK 174 (286)
T ss_dssp ---EEEECTTTCSCEEEEEECTTSC-EEEEET-------TTTEEEEECTT--SCE--EEEEECTTTC--SSEEEEEECSS
T ss_pred ---EEEecCccCCCceEEEEeCCCC-EEEEEC-------CCCEEEEEcCC--CCE--EEEeCCCCcc--CCcEEEEECCC
Confidence 3444322 23345678899997 655432 23468888854 543 2333211100 34567889999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
|++|+ ++. +...|+++++++...+.+... .....| ..+.+. .++.++++...++ ..|.+++.++.
T Consensus 175 g~l~v-~~~--~~~~i~~~~~~g~~~~~~~~~-g~~~~p------~~i~~d----~~G~l~v~~~~~~-~~i~~~~~~g~ 239 (286)
T 1q7f_A 175 QEIFI-SDN--RAHCVKVFNYEGQYLRQIGGE-GITNYP------IGVGIN----SNGEILIADNHNN-FNLTIFTQDGQ 239 (286)
T ss_dssp SEEEE-EEG--GGTEEEEEETTCCEEEEESCT-TTSCSE------EEEEEC----TTCCEEEEECSSS-CEEEEECTTSC
T ss_pred CCEEE-EEC--CCCEEEEEcCCCCEEEEEccC-CccCCC------cEEEEC----CCCCEEEEeCCCC-EEEEEECCCCC
Confidence 98554 433 234688888866555554321 111111 223343 3345665543322 26777787776
Q ss_pred ceEEeccCCC--ceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcC
Q 004735 392 SLSLLDIPFT--DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 432 (732)
Q Consensus 392 ~~~~lt~~~~--~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~ 432 (732)
.++.+..... .+..+ ..+++++++. .. + ..|.+++..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~-~--~~v~v~~~~ 279 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVLA-SK-D--YRLYIYRYV 279 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEEE-ET-T--TEEEEEECS
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEEE-CC-C--CeEEEEEcc
Confidence 6666654322 23444 3456665444 32 2 456666543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00034 Score=76.14 Aligned_cols=165 Identities=10% Similarity=-0.025 Sum_probs=91.6
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceee-c-CCCCEEEEEEeccC---------CCCCCceeEE
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF-D-PRFNRYVTVREDRR---------QDALNSTTEI 223 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~-s-pdG~~l~~~~~~~~---------~~~~~~~~~l 223 (732)
..+++.+..+++|.++|+++ .+..++..-+. ......+++ + |||++|++..+... ...++..+.+
T Consensus 102 ~~lfVnd~~~~rVavIdl~t--~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 102 RFLFMNDKANTRVARVRCDV--MKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEETTTTEEEEEETTT--TEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCC--ceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 35555555566999999997 55444222111 011233444 5 99999755542110 1223456788
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCC-------C-----------------------cc
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW-------D-----------------------KA 273 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~-------~-----------------------~~ 273 (732)
-++|.++.+. ..++.-+. ...+...||||++++..+.+.....+ . -.
T Consensus 178 tvID~~t~~v--~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEV--AWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEE--EEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeE--EEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 9999998762 33443222 23456789999988766643311000 0 01
Q ss_pred EEEEEEecCC--CceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCC
Q 004735 274 ELWVGYISEN--GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 274 ~l~v~d~~~~--g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g 335 (732)
.+-|+|.. + ++.- ...++.. ..+..+.+||||+.+|+++. +..++..+|.++.
T Consensus 255 ~V~VID~~-~~~~~~~-~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~~~~ 309 (595)
T 1fwx_A 255 GVKVVDGR-KEASSLF-TRYIPIA-----NNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRF 309 (595)
T ss_dssp TEEEEECS-GGGCCSS-EEEEEEE-----SSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGH
T ss_pred cEEEEeCc-ccCCcee-EEEEecC-----CCceEEEEcCCCCEEEEeCC--CCCeEEEEECccc
Confidence 25666665 3 2210 1122221 24568899999996667665 4456777787653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00076 Score=69.85 Aligned_cols=278 Identities=11% Similarity=0.008 Sum_probs=135.8
Q ss_pred CCccCceEEcC-C--CcEEEEeecCCCCCceEEEEcCCCCCCCCc-ccCCCCCcccccccccCCceeEEECC-EEEEEeC
Q 004735 88 SKRLGGTAVDG-H--GRLIWLESRPTEAGRGVLVKEPAKAGDEPS-DITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNY 162 (732)
Q Consensus 88 ~~~~~~~~~~p-g--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~ 162 (732)
...+.+++|+| + +.+..+-. .++...+|..... +... .... .+...+.+..++++ ..+++..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~---~dg~i~iw~~~~~--~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGS---WANDVRCWEVQDS--GQTIPKAQQ--------MHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEE---TTSEEEEEEECTT--SCEEEEEEE--------ECSSCEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEEC---CCCcEEEEEcCCC--CceeEEEec--------cccCCEEEEEECcCCCEEEEEc
Confidence 34568999998 4 46555544 3477777776542 1211 1110 12223344555533 4455666
Q ss_pred CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceee--cCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc
Q 004735 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF--DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (732)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~--spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt 240 (732)
.++.|.++|+.+ +....+... ........| +|+|+.++....+ ..|.++|+.+++ .....
T Consensus 106 ~dg~v~iwd~~~--~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~---~~~~~ 167 (368)
T 3mmy_A 106 CDKTAKMWDLSS--NQAIQIAQH----DAPVKTIHWIKAPNYSCVMTGSWD---------KTLKFWDTRSSN---PMMVL 167 (368)
T ss_dssp TTSEEEEEETTT--TEEEEEEEC----SSCEEEEEEEECSSCEEEEEEETT---------SEEEEECSSCSS---CSEEE
T ss_pred CCCcEEEEEcCC--CCceeeccc----cCceEEEEEEeCCCCCEEEEccCC---------CcEEEEECCCCc---EEEEE
Confidence 788999999987 655554433 334566778 9999876655442 579999998876 33333
Q ss_pred cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC--c--EEE
Q 004735 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG--E--LFF 316 (732)
Q Consensus 241 ~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg--~--l~~ 316 (732)
..........++ +..++... . ...+.++++. .+.. ......... . .......+.+++ . .++
T Consensus 168 ~~~~~~~~~~~~--~~~~~~~~-~-------~~~i~~~~~~-~~~~-~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 168 QLPERCYCADVI--YPMAVVAT-A-------ERGLIVYQLE-NQPS-EFRRIESPL-K--HQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp ECSSCEEEEEEE--TTEEEEEE-G-------GGCEEEEECS-SSCE-EEEECCCSC-S--SCEEEEEEEECTTSCEEEEE
T ss_pred ecCCCceEEEec--CCeeEEEe-C-------CCcEEEEEec-cccc-hhhhccccc-c--CCCceEEEcccCCCCCCeEE
Confidence 233323333333 34454444 2 2347888887 3332 122222111 0 111222222222 2 244
Q ss_pred EEeccCCeeeEEEEeccCCe----EEEeccccccc---CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC
Q 004735 317 VTDRKNGFWNLHKWIESNNE----VLAIYSLDAEF---SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (732)
Q Consensus 317 ~~~~~~g~~~l~~~d~~~g~----~~~l~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~ 389 (732)
.... .+.-.+| +..... ...+....... ..+.-......+.|.+ +++. +++...+|.-.|| ++.
T Consensus 233 ~~~~-dg~i~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~-l~s~~~dg~i~iw--d~~ 303 (368)
T 3mmy_A 233 LGSI-EGRVAIH--YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP---VHGT-LATVGSDGRFSFW--DKD 303 (368)
T ss_dssp EEET-TSEEEEE--ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT---TTCC-EEEEETTSCEEEE--ETT
T ss_pred EecC-CCcEEEE--ecCCCCccccceeeeeeecccccccccccccceEEEEEec---CCCE-EEEEccCCeEEEE--ECC
Confidence 4444 4554444 444432 11221111000 0000000122334442 5554 4555566655554 777
Q ss_pred CCce-EEeccCCCceEEe-eEeCCEEEEEEeCC
Q 004735 390 GHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASG 420 (732)
Q Consensus 390 ~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~ 420 (732)
+++. ..+......+..+ ..+++.+++.+++.
T Consensus 304 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 304 ARTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp TTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred CCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 6654 4455445667777 45566666666654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0012 Score=70.51 Aligned_cols=153 Identities=4% Similarity=0.022 Sum_probs=90.1
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
++.|++++.. +.|+++|+++ +..+.+... ......++|+++|++|++. +..... ....++.++.+++-
T Consensus 149 ~g~Lyv~d~~-~~I~~id~~~--~~v~~~~~~----~~~P~~ia~d~~G~~lyva-d~~~~~---~~~~v~~~~~~g~~- 216 (430)
T 3tc9_A 149 HNHLYLVGEQ-HPTRLIDFEK--EYVSTVYSG----LSKVRTICWTHEADSMIIT-NDQNNN---DRPNNYILTRESGF- 216 (430)
T ss_dssp EEEEEEEEBT-EEEEEEETTT--TEEEEEECC----CSCEEEEEECTTSSEEEEE-ECCSCT---TSEEEEEEEGGGTS-
T ss_pred CCeEEEEeCC-CcEEEEECCC--CEEEEEecC----CCCcceEEEeCCCCEEEEE-eCCCCc---ccceEEEEeCCCce-
Confidence 3467777655 7899999986 666555443 2334678899999975544 432211 12467777776543
Q ss_pred cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
...+.+.. .......+++|++.+|++..+ ...+|++++.+ ++....+..... . .....++|+|||+
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~-------~~~~V~~~~~~-~~~~~~~~~~~~-~----~~P~gia~~pdG~ 282 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSW-------NAGQVFRYDFT-TQETTPLFTIQD-S----GWEFHIQFHPSGN 282 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEET-------TTTEEEEEETT-TTEEEEEEECSS-S----SCCEEEEECTTSS
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEEC-------CCCEEEEEECC-CCcEEEEEEcCC-C----CcceeEEEcCCCC
Confidence 10123332 122345678995556877763 23569999987 554422221211 1 3356789999999
Q ss_pred EEEEEeccCCeeeEEEEeccC
Q 004735 314 LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~ 334 (732)
.+|.++. ...+|++++.++
T Consensus 283 ~lyv~d~--~~~~I~~~~~d~ 301 (430)
T 3tc9_A 283 YAYIVVV--NQHYILRSDYDW 301 (430)
T ss_dssp EEEEEET--TTTEEEEEEEET
T ss_pred EEEEEEC--CCCEEEEEeCCc
Confidence 3344444 345688777654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0001 Score=81.15 Aligned_cols=154 Identities=9% Similarity=-0.062 Sum_probs=90.6
Q ss_pred CceeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeece--eecCCC-CEEEEEEeccCCCCCCceeE
Q 004735 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADG--IFDPRF-NRYVTVREDRRQDALNSTTE 222 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~--~~spdG-~~l~~~~~~~~~~~~~~~~~ 222 (732)
..+++++++..+++...++.|.++|+.++ ..+. .+... ....... .|+|+| +. +++...+ ..
T Consensus 269 v~sv~~s~~~~lasgs~DgtV~lWD~~~~-~~~~~~~~~H----~~~V~sv~~~~s~~g~~~-laS~S~D--------~t 334 (524)
T 2j04_B 269 ITTFDFLSPTTVVCGFKNGFVAEFDLTDP-EVPSFYDQVH----DSYILSVSTAYSDFEDTV-VSTVAVD--------GY 334 (524)
T ss_dssp EEEEEESSSSEEEEEETTSEEEEEETTBC-SSCSEEEECS----SSCEEEEEEECCTTSCCE-EEEEETT--------SE
T ss_pred EEEEEecCCCeEEEEeCCCEEEEEECCCC-CCceEEeecc----cccEEEEEEEcCCCCCeE-EEEeccC--------Ce
Confidence 34556655556667778899999999862 2332 23322 2234454 578998 55 4444322 47
Q ss_pred EEEEEcCCCCccccEEccc-CC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 223 IVAIALNGQNIQEPKVLVS-GS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 223 l~~~d~~~~~~~~~~~lt~-~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
|.++|+.+++. ...+.. .. ..+...+|||||+.|+..+ ....+.++|+. ++.. ...+.+..
T Consensus 335 vklWD~~~~~~--~~~~~~~~~~~~v~~v~fsp~~~~l~s~~--------~d~tv~lwd~~-~~~~--~~~l~gH~---- 397 (524)
T 2j04_B 335 FYIFNPKDIAT--TKTTVSRFRGSNLVPVVYCPQIYSYIYSD--------GASSLRAVPSR-AAFA--VHPLVSRE---- 397 (524)
T ss_dssp EEEECGGGHHH--HCEEEEECSCCSCCCEEEETTTTEEEEEC--------SSSEEEEEETT-CTTC--CEEEEECS----
T ss_pred EEEEECCCCCc--ccccccccccCcccceEeCCCcCeEEEeC--------CCCcEEEEECc-cccc--ceeeecCC----
Confidence 88889876541 122221 11 1234578999999876544 12348888987 5653 23344444
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
..+..++|||||+++++... .+. |.++|+..
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~-Dgt--v~lwd~~~ 428 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSA-DGS--LIITNAAR 428 (524)
T ss_dssp SCEEEEECCSSCCBCEEEET-TTE--EECCBSCS
T ss_pred CceEEEEeCCCCCeEEEEEC-CCE--EEEEechH
Confidence 56788999999994444444 454 44455543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0028 Score=67.81 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=87.2
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
+.|++++.. +.|+++++++ +..+.+... ..+...++++|+|+ |+++ +..... ....++.++..++..
T Consensus 153 g~Lyv~D~~-~~I~~id~~~--g~v~~~~~~----~~~P~giavd~dG~-lyVa-d~~~~~---~~~gv~~~~~~~~~~- 219 (433)
T 4hw6_A 153 DDLYWVGQR-DAFRHVDFVN--QYVDIKTTN----IGQCADVNFTLNGD-MVVV-DDQSSD---TNTGIYLFTRASGFT- 219 (433)
T ss_dssp CEEEEECBT-SCEEEEETTT--TEEEEECCC----CSCEEEEEECTTCC-EEEE-ECCSCT---TSEEEEEECGGGTTC-
T ss_pred CEEEEEeCC-CCEEEEECCC--CEEEEeecC----CCCccEEEECCCCC-EEEE-cCCCCc---ccceEEEEECCCCee-
Confidence 577777655 7899999976 666665543 23346788999999 4444 322111 024567776654430
Q ss_pred ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 235 ~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
....+.. .......+++|++..|++..+ ...+|++++.+ +|+........+.. .....++|+|||+.
T Consensus 220 ~~~~~~~-~~~P~giavd~~~G~lyv~d~-------~~~~V~~~d~~-~g~~~~~~~~~~~~----~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 220 ERLSLCN-ARGAKTCAVHPQNGKIYYTRY-------HHAMISSYDPA-TGTLTEEEVMMDTK----GSNFHIVWHPTGDW 286 (433)
T ss_dssp CEEEEEE-CSSBCCCEECTTTCCEEECBT-------TCSEEEEECTT-TCCEEEEEEECSCC----SSCEEEEECTTSSE
T ss_pred ccccccc-cCCCCEEEEeCCCCeEEEEEC-------CCCEEEEEECC-CCeEEEEEeccCCC----CCcccEEEeCCCCE
Confidence 0122221 122345678995556866642 24569999987 67652211111221 22235899999994
Q ss_pred EEEEeccCCeeeEEEEecc
Q 004735 315 FFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~ 333 (732)
+|.++. +..+|++++.+
T Consensus 287 LYvad~--~~~~I~~~~~d 303 (433)
T 4hw6_A 287 AYIIYN--GKHCIYRVDYN 303 (433)
T ss_dssp EEEEET--TTTEEEEEEBC
T ss_pred EEEEeC--CCCEEEEEeCC
Confidence 444554 45578887765
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0034 Score=63.41 Aligned_cols=193 Identities=8% Similarity=-0.028 Sum_probs=102.3
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc---cCCCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV---SGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt---~~~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
+-.+||+++ .| ++..+ ..|+++|+.+|+ ..++. .....+....|+|||++|+-.+
T Consensus 29 ~~l~WS~~~-~l-Avg~D---------~tV~iWd~~tg~---~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs-------- 86 (318)
T 4ggc_A 29 NLVDWSSGN-VL-AVALD---------NSVYLWSASSGD---ILQLLQMEQPGEYISSVAWIKEGNYLAVGT-------- 86 (318)
T ss_dssp BCEEECTTS-EE-EEEET---------TEEEEEETTTCC---EEEEEECCSTTCCEEEEEECTTSSEEEEEE--------
T ss_pred eEEEECCCC-EE-EEEeC---------CEEEEEECCCCC---EEEEEEecCCCCeEEEEEECCCCCEEEEEE--------
Confidence 446799987 44 44332 479999999987 55443 2334567789999999987665
Q ss_pred CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCC--eEEEecccccccC
Q 004735 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFS 348 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g--~~~~l~~~~~~~~ 348 (732)
....|.++++. +++. +..+.+.. . ....+++++++++.... .+...++ +..++ ....+........
T Consensus 87 ~Dg~v~iw~~~-~~~~--~~~~~~h~----~--~~~~~~~~~~~l~s~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 87 SSAEVQLWDVQ-QQKR--LRNMTSHS----A--RVGSLSWNSYILSSGSR-SGHIHHH--DVRVAEHHVATLSGHSQEVC 154 (318)
T ss_dssp TTSEEEEEETT-TTEE--EEEEECCS----S--CEEEEEEETTEEEEEET-TSEEEEE--ETTSSSCEEEEEECCSSCEE
T ss_pred CCCcEEEeecC-Ccee--EEEecCcc----c--eEEEeecCCCEEEEEec-CCceEee--ecCCCceeEEEEcCccCceE
Confidence 23458899998 7765 44444443 1 23356667775555544 4544443 33332 2222222211111
Q ss_pred CCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-----EEeccCCCceEEe--eEeCCEEEEEEeCCC
Q 004735 349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-----SLLDIPFTDIDNI--TLGNDCLFVEGASGV 421 (732)
Q Consensus 349 ~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-----~~lt~~~~~v~~~--~~~~~~~~~~~~~~~ 421 (732)
.. .+.+ +++ ++++...++.-.|| ++.+++. .........+..+ ...+..+++..+ ..
T Consensus 155 ~~---------~~~~---~~~-~l~s~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~ 218 (318)
T 4ggc_A 155 GL---------RWAP---DGR-HLASGGNDNLVNVW--PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GT 218 (318)
T ss_dssp EE---------EECT---TSS-EEEEEETTSCEEEE--ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CT
T ss_pred EE---------EEcC---CCC-EEEEEecCcceeEE--ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cC
Confidence 11 2221 444 55566667766666 5555432 1222223345444 233344444333 23
Q ss_pred CCcEEEEEEcCCCcc
Q 004735 422 EPSSVAKVTLDDHKL 436 (732)
Q Consensus 422 ~~~~ly~~dl~~~~~ 436 (732)
....+.++|...+..
T Consensus 219 ~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 219 SDRHIRIWNVCSGAC 233 (318)
T ss_dssp TTCEEEEEETTTCCE
T ss_pred CCCEEEEEecccccc
Confidence 344566777766553
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.011 Score=63.37 Aligned_cols=232 Identities=11% Similarity=0.075 Sum_probs=124.1
Q ss_pred CceeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
..++.++++.++ +...++.|.++|+.+ ++.. .+... ........| +|+.++....+ ..|.+
T Consensus 202 v~~~~~~~~~l~-s~s~dg~i~~wd~~~--~~~~~~~~~~----~~~v~~~~~--~~~~l~~~~~d---------g~i~i 263 (445)
T 2ovr_B 202 VRCMHLHEKRVV-SGSRDATLRVWDIET--GQCLHVLMGH----VAAVRCVQY--DGRRVVSGAYD---------FMVKV 263 (445)
T ss_dssp EEEEEEETTEEE-EEETTSEEEEEESSS--CCEEEEEECC----SSCEEEEEE--CSSCEEEEETT---------SCEEE
T ss_pred EEEEEecCCEEE-EEeCCCEEEEEECCC--CcEEEEEcCC----cccEEEEEE--CCCEEEEEcCC---------CEEEE
Confidence 345666666644 445678899999987 4433 33322 222334444 78876555442 47888
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
+|+.+++. ...+...........| ||+.|+..+. ...|.++|+. +++. +..+.+.. ..+..
T Consensus 264 wd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~--------d~~i~i~d~~-~~~~--~~~~~~~~----~~v~~ 324 (445)
T 2ovr_B 264 WDPETETC--LHTLQGHTNRVYSLQF--DGIHVVSGSL--------DTSIRVWDVE-TGNC--IHTLTGHQ----SLTSG 324 (445)
T ss_dssp EEGGGTEE--EEEECCCSSCEEEEEE--CSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCCC----SCEEE
T ss_pred EECCCCcE--eEEecCCCCceEEEEE--CCCEEEEEeC--------CCeEEEEECC-CCCE--EEEEcCCc----ccEEE
Confidence 89887661 2333333334444555 8888876652 2348999998 6765 34444443 23333
Q ss_pred ceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEE
Q 004735 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (732)
Q Consensus 306 ~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~ 385 (732)
++++++++++... .| .|..+|+.+++.............+.. .+.| +++ ++++...+|.-.||
T Consensus 325 --~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~-----~~~~-----~~~-~l~s~~~dg~v~iw- 387 (445)
T 2ovr_B 325 --MELKDNILVSGNA-DS--TVKIWDIKTGQCLQTLQGPNKHQSAVT-----CLQF-----NKN-FVITSSDDGTVKLW- 387 (445)
T ss_dssp --EEEETTEEEEEET-TS--CEEEEETTTCCEEEEECSTTSCSSCEE-----EEEE-----CSS-EEEEEETTSEEEEE-
T ss_pred --EEEeCCEEEEEeC-CC--eEEEEECCCCcEEEEEccCCCCCCCEE-----EEEE-----CCC-EEEEEeCCCeEEEE-
Confidence 3445665555544 34 466678777664433322111112211 2233 444 44555566655555
Q ss_pred EECCCCce-EEec-----cCCCceEEe-eEeCCEEEEEEeCCCC-CcEEEEEEcCC
Q 004735 386 LDDFGHSL-SLLD-----IPFTDIDNI-TLGNDCLFVEGASGVE-PSSVAKVTLDD 433 (732)
Q Consensus 386 ~~~~~~~~-~~lt-----~~~~~v~~~-~~~~~~~~~~~~~~~~-~~~ly~~dl~~ 433 (732)
++.+++. +.+. .....+..+ ..+++.+++.++.... ...|+++|.+.
T Consensus 388 -d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 388 -DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp -ETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred -ECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 6766654 3441 224456666 3445555555544433 45578887654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0045 Score=63.45 Aligned_cols=165 Identities=10% Similarity=0.055 Sum_probs=91.3
Q ss_pred eEEE-CCEEEEEeCCCCeEEEEeCCCCCC--CceecCCC----C-CCCCeEeeceeecC-CCCEEEEEEeccCCCCCCce
Q 004735 150 FRIF-GDTVIFSNYKDQRLYKHSIDSKDS--SPLPITPD----Y-GEPLVSYADGIFDP-RFNRYVTVREDRRQDALNST 220 (732)
Q Consensus 150 ~~~~-~~~i~f~~~~~~~l~~~d~~~~~~--~~~~lt~~----~-~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~ 220 (732)
.+++ ++.++++...++.|++++.++ . ....+... . ...-....+.+++| +|+ | |+.+... .
T Consensus 96 ia~d~~g~l~v~d~~~~~v~~~~~~g--~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-l-yv~d~~~------~ 165 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVALHQVFKLDPHS--KEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-V-FVSDGYC------N 165 (329)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTC--SSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-E-EEEECSS------C
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCC--CeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-E-EEEeCCC------C
Confidence 3444 336788877778999999875 3 23333210 0 00011335678999 565 3 4433210 2
Q ss_pred eEEEEEEcCCCCccccEEccc-CC---------CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeE
Q 004735 221 TEIVAIALNGQNIQEPKVLVS-GS---------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 290 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~-~~---------~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~ 290 (732)
..|++++.++.. ...+.. +. ....+.+++||+..|+.... ....|.+++.+ +|+. +.
T Consensus 166 ~~I~~~~~~g~~---~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~-------~~~~I~~~~~~-~G~~--~~ 232 (329)
T 3fvz_A 166 SRIVQFSPSGKF---VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR-------ENGRIQCFKTD-TKEF--VR 232 (329)
T ss_dssp CEEEEECTTSCE---EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET-------TTTEEEEEETT-TCCE--EE
T ss_pred CeEEEEcCCCCE---EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC-------CCCEEEEEECC-CCcE--EE
Confidence 689999966543 333321 11 11345688999777866542 24569999987 6876 33
Q ss_pred EecCCCCCccccCcCceeCCCCcEEEEEec-----cCCeeeEEEEeccCCeEEEec
Q 004735 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDR-----KNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 291 ~~~~~~~~~~~~~~~~~wspDg~l~~~~~~-----~~g~~~l~~~d~~~g~~~~l~ 341 (732)
.+...... ..+..+.++| | +++..+. ..+...+++++..+|+.....
T Consensus 233 ~~~~~~~~--~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 233 EIKHASFG--RNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp EECCTTTT--TCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred EEeccccC--CCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 33222101 3345667888 4 3333332 022347888998887765443
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=9.3e-05 Score=71.82 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=85.3
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-cccH----------------HHHHHHHCCC
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNL----------------SIQYWTSRGW 525 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~~~~----------------~~~~l~~~G~ 525 (732)
-+.+... .+..+..|++.... .....|+||+++|||+..... .... ....|. +-.
T Consensus 23 y~~v~~~-~~~~lFywf~es~~------~~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~-~~a 94 (255)
T 1whs_A 23 YITVDEG-AGRSLFYLLQEAPE------DAQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWN-KVA 94 (255)
T ss_dssp EEEEETT-TTEEEEEEEECCCG------GGCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGG-GTS
T ss_pred EEECCCC-CCcEEEEEEEEecC------CCCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCccccc-ccC
Confidence 3455544 67889988887643 135679999999999875443 1100 000111 236
Q ss_pred EEEEEcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHHHH-HhcCCCCCCcEEEEEcChHHHHHHHHHh----C---CC
Q 004735 526 AFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFL-VGSGKADEKRLCITGGSAGGYTTLAALA----F---RD 596 (732)
Q Consensus 526 ~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~~l-~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~---p~ 596 (732)
.++.+|.+-..|+...........++. ...+|+...++.. .+.+.....++.|.|.|+||..+-.++. + .-
T Consensus 95 nvlfiDqPvGtGfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~i 174 (255)
T 1whs_A 95 NVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVI 174 (255)
T ss_dssp EEEEECCSTTSTTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSC
T ss_pred CEEEEecCCCCccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCccc
Confidence 899999654345433211111101111 2245555555533 3334455678999999999998877764 1 24
Q ss_pred cceEEEeecCcCCHHHH
Q 004735 597 TFKAGASLYGVADLSML 613 (732)
Q Consensus 597 ~~~a~v~~~~~~d~~~~ 613 (732)
.++++++.+|+.|....
T Consensus 175 nLkGi~ign~~~d~~~~ 191 (255)
T 1whs_A 175 NLKGFMVGNGLIDDYHD 191 (255)
T ss_dssp EEEEEEEEEECCBHHHH
T ss_pred ccceEEecCCccCHHHh
Confidence 58999999999987643
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00092 Score=64.42 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=115.3
Q ss_pred cCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEE
Q 004735 91 LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170 (732)
Q Consensus 91 ~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~ 170 (732)
..++.++ ++.+|.... ..|+..|...+..+|...+.+.... .+-+....+.+++|+.....++.++++
T Consensus 23 tqGL~~~-~~~LyestG---~~g~S~v~~vD~~tgkv~~~~~l~~--------~~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 23 TEGLFYL-RGHLYESTG---ETGRSSVRKVDLETGRILQRAEVPP--------PYFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEEEEE-TTEEEEEEC---CTTSCEEEEEETTTCCEEEEEECCT--------TCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred cccEEEE-CCEEEEECC---CCCCceEEEEECCCCCEEEEEeCCC--------CcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 3578888 777777654 2355577788887662222221111 122234667789999998888999999
Q ss_pred eCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc--cCC---C
Q 004735 171 SIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV--SGS---D 244 (732)
Q Consensus 171 d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt--~~~---~ 244 (732)
|.++ .+ ...+.... ....+.+||++| |+++. ...|+++|.++.+. .+.+. ... .
T Consensus 91 D~~t--l~~~~ti~~~~-------~Gwglt~dg~~L-~vSdg--------s~~l~~iDp~t~~~--~~~I~V~~~g~~~~ 150 (243)
T 3mbr_X 91 DLAT--LTPRARFRYPG-------EGWALTSDDSHL-YMSDG--------TAVIRKLDPDTLQQ--VGSIKVTAGGRPLD 150 (243)
T ss_dssp ETTT--TEEEEEEECSS-------CCCEEEECSSCE-EEECS--------SSEEEEECTTTCCE--EEEEECEETTEECC
T ss_pred ECCc--CcEEEEEeCCC-------CceEEeeCCCEE-EEECC--------CCeEEEEeCCCCeE--EEEEEEccCCcccc
Confidence 9987 33 33343321 112356788874 44442 26899999998762 23332 211 1
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC-------CccccCcCceeCCCCcEEEE
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-------TIVESPTEPKWSSKGELFFV 317 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~wspDg~l~~~ 317 (732)
+.+...|. ||+ |+-.. |...+|.++|.+ +|++.....+.+-.+ ........++|+|+++.+|+
T Consensus 151 ~lNeLe~~-~G~-lyanv-------w~s~~I~vIDp~-tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfV 220 (243)
T 3mbr_X 151 NLNELEWV-NGE-LLANV-------WLTSRIARIDPA-SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFV 220 (243)
T ss_dssp CEEEEEEE-TTE-EEEEE-------TTTTEEEEECTT-TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEE
T ss_pred cceeeEEe-CCE-EEEEE-------CCCCeEEEEECC-CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEE
Confidence 22334444 664 65333 234569999998 888754444332100 00023457899999885555
Q ss_pred EeccCCeeeEEEEec
Q 004735 318 TDRKNGFWNLHKWIE 332 (732)
Q Consensus 318 ~~~~~g~~~l~~~d~ 332 (732)
+.. -+..||.+.+
T Consensus 221 TGK--~wp~~~~v~~ 233 (243)
T 3mbr_X 221 TGK--RWPMLYEIRL 233 (243)
T ss_dssp EET--TCSEEEEEEE
T ss_pred ECC--CCCcEEEEEE
Confidence 544 4667887765
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0012 Score=70.80 Aligned_cols=164 Identities=7% Similarity=0.009 Sum_probs=95.2
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceee-------cCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF-------DPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~-------spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
++.|++.......|+++|+++ +....|.........+...++| +++|++|++....... . .....++++
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~--~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~-~-~~~~~V~~i 226 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKN--RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK-G-DESPSVYII 226 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTT--TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT-G-GGEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEECCC--CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC-c-ccCceEEEE
Confidence 346777765556899999987 6666655432111224566789 9999985555432211 0 113568888
Q ss_pred EcCC-CCccc-c--EEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC------CCce------e---
Q 004735 227 ALNG-QNIQE-P--KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE------NGDV------Y--- 287 (732)
Q Consensus 227 d~~~-~~~~~-~--~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~------~g~~------~--- 287 (732)
+.+. |.... . +.+... ......+.+|+++.|++.... ..+|+++|++. +|+. .
T Consensus 227 ~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~-------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 227 KRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYE-------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp ECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETT-------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred ecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECC-------CCEEEEEecccccccccCceeeccccccccc
Confidence 7655 34210 0 233321 123456789988889887732 34699999861 3433 0
Q ss_pred -eeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC
Q 004735 288 -KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 288 -~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
...++.-.+ . .....++|+|||+.+|+++. +..+|++++.++
T Consensus 299 ~~~~l~~~~~-~--~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg 341 (496)
T 3kya_A 299 TFKQLFTIAD-P--SWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDE 341 (496)
T ss_dssp TEEEEEECSS-S--SCCEEEEECTTSSEEEEEET--TTTEEEEEEEET
T ss_pred ccceeEecCC-C--CCceEEEEcCCCCEEEEEeC--CCCEEEEEecCC
Confidence 001222211 0 33457899999995556665 566788877654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0054 Score=61.34 Aligned_cols=225 Identities=10% Similarity=0.018 Sum_probs=121.7
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.+++.....+.|++++.+ +....+.... .........++++|+. ++.... ...|++++.+ ++
T Consensus 27 ~l~v~~~~~~~v~~~d~~---~~~~~~~~~~--~~~~~~~i~~~~~g~l-~v~~~~--------~~~i~~~~~~-g~--- 88 (299)
T 2z2n_A 27 KVWITQHKANMISCINLD---GKITEYPLPT--PDAKVMCLTISSDGEV-WFTENA--------ANKIGRITKK-GI--- 88 (299)
T ss_dssp CEEEEETTTTEEEEECTT---CCEEEEECSS--TTCCEEEEEECTTSCE-EEEETT--------TTEEEEECTT-SC---
T ss_pred CEEEEecCCCcEEEEcCC---CCeEEecCCc--ccCceeeEEECCCCCE-EEeCCC--------CCeEEEECCC-Cc---
Confidence 566666556789999887 3344332110 0223456778999984 333221 1579999987 44
Q ss_pred cEEcc--cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 236 PKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 236 ~~~lt--~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
.+.+. ..........++|||+ |++.... ...|+++|. +|+..... ..... ..+..+.+++||+
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~-------~~~i~~~d~--~g~~~~~~-~~~~~----~~~~~i~~~~~g~ 153 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGD-IWFTEMN-------GNRIGRITD--DGKIREYE-LPNKG----SYPSFITLGSDNA 153 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSC-EEEEETT-------TTEEEEECT--TCCEEEEE-CSSTT----CCEEEEEECTTSC
T ss_pred EEEEeCCCcCCCceeeEECCCCC-EEEEecC-------CceEEEECC--CCCEEEec-CCCCC----CCCceEEEcCCCC
Confidence 44433 1223445667889986 5544321 345888876 35543221 22222 3456778899998
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
+++.... ...|+++++ +++.+.+.... .... ...+.+. .++.+++..... ..|++++. +++.
T Consensus 154 l~v~~~~---~~~i~~~~~-~g~~~~~~~~~-~~~~------~~~i~~~----~~g~l~v~~~~~--~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 154 LWFTENQ---NNAIGRITE-SGDITEFKIPT-PASG------PVGITKG----NDDALWFVEIIG--NKIGRITT-SGEI 215 (299)
T ss_dssp EEEEETT---TTEEEEECT-TCCEEEEECSS-TTCC------EEEEEEC----TTSSEEEEETTT--TEEEEECT-TCCE
T ss_pred EEEEeCC---CCEEEEEcC-CCcEEEeeCCC-CCCc------ceeEEEC----CCCCEEEEccCC--ceEEEECC-CCcE
Confidence 7665432 346889998 67665542110 0111 1122332 334466554322 36888888 6666
Q ss_pred EEeccC--CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 394 SLLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 394 ~~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.+..+ ...+..+ ...++++++ +.. ....|+++|. .++
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~g~l~v-~~~--~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 216 TEFKIPTPNARPHAITAGAGIDLWF-TEW--GANKIGRLTS-NNI 256 (299)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEE-EET--TTTEEEEEET-TTE
T ss_pred EEEECCCCCCCceeEEECCCCCEEE-ecc--CCceEEEECC-CCc
Confidence 554332 3345555 334455444 331 2346888887 344
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00042 Score=71.87 Aligned_cols=218 Identities=12% Similarity=0.069 Sum_probs=114.6
Q ss_pred ccCCCCCCCCcCCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCC-ccc-CCCCCccccccccc
Q 004735 68 ITAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDI-TPKEYAVRTTAQEY 145 (732)
Q Consensus 68 ~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~l-~~~~~~~~~~~~~~ 145 (732)
++.||..|.... ...-..+.+++++|.+++|+++......+...|++++..+| +. +.+ ++..... ...
T Consensus 51 ~~~~~p~~~~~~-----~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg-~~~~~~~~~~~~~~----~~~ 120 (343)
T 2qe8_A 51 GLIPFPPQSGNA-----IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNN-QLSRVIYLPPPITL----SNS 120 (343)
T ss_dssp EEEESCCCCSSC-----CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTT-EEEEEEECCTTTSC----TTC
T ss_pred CeecCCCcccCc-----ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCC-eEEEEEECChhhcc----ccc
Confidence 355776665210 01124567889998667999986410000124777776644 32 222 1211000 011
Q ss_pred CCceeEEE--CCEEEEEeC---CCCeEEEEeCCCCCCCceecCCCC-C--C-------CC----------------eEee
Q 004735 146 GGGAFRIF--GDTVIFSNY---KDQRLYKHSIDSKDSSPLPITPDY-G--E-------PL----------------VSYA 194 (732)
Q Consensus 146 g~~~~~~~--~~~i~f~~~---~~~~l~~~d~~~~~~~~~~lt~~~-~--~-------~~----------------~~~~ 194 (732)
....+.++ ++.+++++. ..+.|+++|+++ ++..++.... . . .+ ....
T Consensus 121 ~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~--g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~ 198 (343)
T 2qe8_A 121 FVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT--GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVN 198 (343)
T ss_dssp CCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT--CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEE
T ss_pred ccceEEEecCCCEEEEEcCccCCCCeEEEEECCC--CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccc
Confidence 12345555 457777766 567899999986 5544432110 0 0 00 1125
Q ss_pred ceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC---CCccc------cEEcccCCCceeccccCCCCCeEEEEeccC
Q 004735 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG---QNIQE------PKVLVSGSDFYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~---~~~~~------~~~lt~~~~~~~~p~~SPDG~~la~~~~~~ 265 (732)
..+|||||+.|++.... ...||+++.+. +.... ...+ .......+.++++||+ |++..+
T Consensus 199 gia~s~dg~~ly~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~-- 266 (343)
T 2qe8_A 199 GIVLDAENEWLYLSPMH--------STSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDL-- 266 (343)
T ss_dssp EEEECTTSCEEEEEESS--------CSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEG--
T ss_pred eeEeccCCCEEEEEeCC--------CCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEcc--
Confidence 57899999986665432 15899998531 11000 0111 1112334578899985 655542
Q ss_pred CCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEec
Q 004735 266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 266 ~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~ 320 (732)
....|.++|.+ +|+.. .+..... . ..+..+++++||+||++...
T Consensus 267 -----~~~~V~~~d~~-~G~~~--~~~~~~~-~--~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 267 -----AHSAIGVITSA-DRAYK--LLVTDEK-L--SWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp -----GGTEEEEEETT-TTEEE--EEEECGG-G--SCEEEEEECTTSCEEEEECC
T ss_pred -----CCCeEEEEECC-CCCEE--EEEECCc-e--ecCCeeEECCCCcEEEEeCc
Confidence 24569999974 56552 2222210 0 34567888888887776654
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00029 Score=72.11 Aligned_cols=93 Identities=9% Similarity=0.012 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.+.|+++||.++. ...|..+...| ++.|+.+|+++.. ....++++.+.+...+.... ..+
T Consensus 46 ~~~l~~~hg~~g~--~~~~~~~~~~l---~~~v~~~~~~~~~--------------~~~~~~~~a~~~~~~i~~~~-~~~ 105 (316)
T 2px6_A 46 ERPLFLVHPIEGS--TTVFHSLASRL---SIPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQVQ-PEG 105 (316)
T ss_dssp SCCEEEECCTTCC--SGGGHHHHHHC---SSCEEEECCCTTS--------------CTTCHHHHHHHHHHHHTTTC-SSC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHhc---CCCEEEEECCCCC--------------CcCCHHHHHHHHHHHHHHhC-CCC
Confidence 4668899997433 34555555555 3899999997211 01224444444333333311 136
Q ss_pred cEEEEEcChHHHHHHHHHh-C---CCc---ceEEEeecCc
Q 004735 575 RLCITGGSAGGYTTLAALA-F---RDT---FKAGASLYGV 607 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~---p~~---~~a~v~~~~~ 607 (732)
++.++|||+||.+++.++. . ++. ++.++++++.
T Consensus 106 ~~~l~G~S~Gg~va~~~a~~l~~~g~~~p~v~~l~li~~~ 145 (316)
T 2px6_A 106 PYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 145 (316)
T ss_dssp CCEEEEETHHHHHHHHHHHHHHHHC---CCCCEEEEESCS
T ss_pred CEEEEEECHHHHHHHHHHHHHHHcCCcccccceEEEEcCC
Confidence 7999999999999998876 3 445 7778776654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.037 Score=62.78 Aligned_cols=174 Identities=11% Similarity=0.019 Sum_probs=87.2
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCC-CCCCCeE-eeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPD-YGEPLVS-YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~-~~~~~~~-~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
.+..+++|++. ..++.|+.+|..+ |+.. ..... ....... ...|.. .+..|++... ..+. .....|+.+
T Consensus 124 ~a~~~~~v~v~-~~dg~l~alD~~t--G~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~-~~~~--~~~g~v~a~ 195 (677)
T 1kb0_A 124 VALWKGKVYVG-AWDGRLIALDAAT--GKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNG-GAEY--GVRGYITAY 195 (677)
T ss_dssp CEEETTEEEEE-CTTSEEEEEETTT--CCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCB-CTTT--CCBCEEEEE
T ss_pred ceEECCEEEEE-cCCCEEEEEECCC--CCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEec-cccc--CCCCEEEEE
Confidence 34566777665 3567899999987 5542 22111 0000011 122222 3444443322 1110 113689999
Q ss_pred EcCCCCccccEEcccCC------------------------------CceeccccCCCCCeEEEEeccCCCCCCC-----
Q 004735 227 ALNGQNIQEPKVLVSGS------------------------------DFYAFPRMDPRGERMAWIEWHHPNMPWD----- 271 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~------------------------------~~~~~p~~SPDG~~la~~~~~~~~~~~~----- 271 (732)
|..+|+........... .....+.++|++..|++...+ .. +|.
T Consensus 196 D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~-~~-~w~~~~~~ 273 (677)
T 1kb0_A 196 DAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGN-GS-PWSHKVRS 273 (677)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCC-EE-SSCHHHHS
T ss_pred ECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCC-Cc-cccCCCCC
Confidence 99988711001111111 011245678898877655422 11 121
Q ss_pred --------ccEEEEEEecCCCceeeeEEecCCCCCccc-cCcCceeCC---CC---cEEEEEeccCCeeeEEEEeccCCe
Q 004735 272 --------KAELWVGYISENGDVYKRVCVAGFDPTIVE-SPTEPKWSS---KG---ELFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 272 --------~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~~wsp---Dg---~l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
...|+.+|.+ +|+..+.......+ .|.. ....|.... || ++++.... +| .||.+|..+|+
T Consensus 274 ~~~gd~~~~~sv~AlD~~-TG~~~W~~~~~~~d-~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~-~G--~l~~lD~~tG~ 348 (677)
T 1kb0_A 274 PKGGDNLYLASIVALDPD-TGKYKWHYQETPGD-NWDYTSTQPMILADIKIAGKPRKVILHAPK-NG--FFFVLDRTNGK 348 (677)
T ss_dssp TTCCCCTTTTEEEEECTT-TCCEEEEEESSTTC-CSCCCCCSCCEEEEEEETTEEEEEEEECCT-TS--EEEEEETTTCC
T ss_pred ccCCCCeeeEEEEEEECC-CCCEEEEEecCCCc-ccccccCCCcEEEecccCCcEeeEEEEECC-CC--EEEEEECCCCC
Confidence 2369999998 89886655544332 1211 123344332 67 34444444 34 68899999887
Q ss_pred EE
Q 004735 337 VL 338 (732)
Q Consensus 337 ~~ 338 (732)
..
T Consensus 349 ~l 350 (677)
T 1kb0_A 349 FI 350 (677)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.026 Score=64.01 Aligned_cols=86 Identities=13% Similarity=0.051 Sum_probs=46.9
Q ss_pred ceeecCCCCEEEEEEeccCC----------CCCCceeEEEEEEcCCCCccccEEcccCC----CceeccccCC---CCC-
Q 004735 195 DGIFDPRFNRYVTVREDRRQ----------DALNSTTEIVAIALNGQNIQEPKVLVSGS----DFYAFPRMDP---RGE- 256 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~----------~~~~~~~~l~~~d~~~~~~~~~~~lt~~~----~~~~~p~~SP---DG~- 256 (732)
.++++|+++.|++...+... ..+-....|+.+|+++|+.....+++... +....|.+.. ||+
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP 326 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence 46788999976655433210 11111246999999999821112333222 1123454433 785
Q ss_pred -eEEEEeccCCCCCCCccEEEEEEecCCCceee
Q 004735 257 -RMAWIEWHHPNMPWDKAELWVGYISENGDVYK 288 (732)
Q Consensus 257 -~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~ 288 (732)
.+++.. + ....||++|.. +|++..
T Consensus 327 ~~~l~~~-~------~~G~l~~lD~~-tG~~l~ 351 (677)
T 1kb0_A 327 RKVILHA-P------KNGFFFVLDRT-NGKFIS 351 (677)
T ss_dssp EEEEEEC-C------TTSEEEEEETT-TCCEEE
T ss_pred eeEEEEE-C------CCCEEEEEECC-CCCEec
Confidence 344443 2 24569999998 887643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0025 Score=68.37 Aligned_cols=119 Identities=11% Similarity=0.020 Sum_probs=68.8
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC-----Cc-ccc--EEccc-CCCceeccccCCC-CCeEEEEe
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-----NI-QEP--KVLVS-GSDFYAFPRMDPR-GERMAWIE 262 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~-~~~--~~lt~-~~~~~~~p~~SPD-G~~la~~~ 262 (732)
....+|+|||++|+....... . ...|.++|+.++ +. ... ..+.. ....+...+|+|+ ++.|+-.+
T Consensus 95 v~~l~~spdg~~lav~~~sgs-~----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSE-Y----GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETT-T----EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred ccEEEEcCCCCEEEEEEeccC-C----CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 567789999998765321011 1 267888887654 10 001 11111 2345667899998 66666555
Q ss_pred ccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC
Q 004735 263 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 263 ~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
. ...|.++|+. ++.. .....+.. ..+..++|+|||+.+++... .|. |..+|+.+
T Consensus 170 ~--------Dg~v~iwD~~-~~~~--~~~~~~~~----~~v~~v~wspdg~~lasgs~-dg~--v~iwd~~~ 223 (434)
T 2oit_A 170 A--------DGSIAVLQVT-ETVK--VCATLPST----VAVTSVCWSPKGKQLAVGKQ-NGT--VVQYLPTL 223 (434)
T ss_dssp T--------TSCEEEEEES-SSEE--EEEEECGG----GCEEEEEECTTSSCEEEEET-TSC--EEEECTTC
T ss_pred C--------CCeEEEEEcC-CCcc--eeeccCCC----CceeEEEEcCCCCEEEEEcC-CCc--EEEEccCC
Confidence 2 2338999998 5532 22222222 45678899999993334444 343 66667763
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0048 Score=60.24 Aligned_cols=214 Identities=10% Similarity=0.189 Sum_probs=117.9
Q ss_pred HHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE-CCEEEEE
Q 004735 83 VVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GDTVIFS 160 (732)
Q Consensus 83 ~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~-~~~i~f~ 160 (732)
.+-.....++++.|+| ++.+|.+...+ + .|++.+.. | +...-.+-. + ...+. .+++. ++.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~---~--~I~~ld~~-g-~v~~~i~l~-g----~~D~E--GIa~~~~g~~~vs 86 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKP---A--AIVEMTTN-G-DLIRTIPLD-F----VKDLE--TIEYIGDNQFVIS 86 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETT---E--EEEEEETT-C-CEEEEEECS-S----CSSEE--EEEECSTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCC---C--eEEEEeCC-C-CEEEEEecC-C----CCChH--HeEEeCCCEEEEE
Confidence 3444445789999999 88888877642 2 47777765 3 332222111 0 01111 12333 3466667
Q ss_pred eCCCCeEEEEeCCCCCCCc---eecCCC--CCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE--cCCCCc
Q 004735 161 NYKDQRLYKHSIDSKDSSP---LPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA--LNGQNI 233 (732)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~---~~lt~~--~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d--~~~~~~ 233 (732)
.+.+++|++++++.. +.. ...+.. .......+-..+|+|++++|+.+.+..+ ..||.++ +.+..
T Consensus 87 ~E~~~~l~~~~v~~~-~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-------~~i~~~~g~~~~~~- 157 (255)
T 3qqz_A 87 DERDYAIYVISLTPN-SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-------IEVYKVNGLLSSNE- 157 (255)
T ss_dssp ETTTTEEEEEEECTT-CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-------EEEEEEESTTCSSC-
T ss_pred ECCCCcEEEEEcCCC-CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC-------ceEEEEcccccCCc-
Confidence 777788999988752 321 122110 0011233466789999999777766442 5889888 22222
Q ss_pred cccEEccc-------CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC---CccccC
Q 004735 234 QEPKVLVS-------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP---TIVESP 303 (732)
Q Consensus 234 ~~~~~lt~-------~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~---~~~~~~ 303 (732)
.+.+.. ...-..+..+.|.-.+|+.++ +. ...|.++|.+ |++.....+..... ......
T Consensus 158 --l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS-~~------s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qp 226 (255)
T 3qqz_A 158 --LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLS-HE------SRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQA 226 (255)
T ss_dssp --CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEE-TT------TTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSE
T ss_pred --eeeecchhhccccccCCceeEEEcCCCCeEEEEE-CC------CCeEEEEcCC--CCEEEEEEcCCccCCcccccCCC
Confidence 222211 011234567788777887776 43 2348888765 66544444443210 000234
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEeccC
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
..+++++||+||.++.. ..+|++....
T Consensus 227 EGia~d~~G~lyIvsE~----n~~y~f~~~~ 253 (255)
T 3qqz_A 227 EGVAMDASGNIYIVSEP----NRFYRFTPQS 253 (255)
T ss_dssp EEEEECTTCCEEEEETT----TEEEEEEC--
T ss_pred CeeEECCCCCEEEEcCC----ceEEEEEecC
Confidence 67889999987766543 2677876544
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0032 Score=62.80 Aligned_cols=183 Identities=10% Similarity=-0.002 Sum_probs=97.6
Q ss_pred eEEEEEEcCCCCccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCc
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~ 299 (732)
..|+++|.++|+. +-++..+. .......++|||+.|+ +. ...|+.+|. +|+..+. +.... .
T Consensus 15 ~~v~~~d~~tG~~--~w~~~~~~~~~~~~~~~~pdG~ilv--s~--------~~~V~~~d~--~G~~~W~--~~~~~-~- 76 (276)
T 3no2_A 15 NKIAIINKDTKEI--VWEYPLEKGWECNSVAATKAGEILF--SY--------SKGAKMITR--DGRELWN--IAAPA-G- 76 (276)
T ss_dssp SEEEEEETTTTEE--EEEEECCTTCCCCEEEECTTSCEEE--EC--------BSEEEEECT--TSCEEEE--EECCT-T-
T ss_pred CEEEEEECCCCeE--EEEeCCCccCCCcCeEECCCCCEEE--eC--------CCCEEEECC--CCCEEEE--EcCCC-C-
Confidence 6899999978772 22333222 2344567899998555 31 234788876 4665332 22221 0
Q ss_pred cccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
..+..+.+++||++++.... ...+++.+++++.....+.-.. ....+.. ......+++ +++ ++++...+
T Consensus 77 -~~~~~~~~~~dG~~lv~~~~--~~~~v~~vd~~Gk~l~~~~~~~-~~~~~~~--~~~~v~~~~---~G~-~lv~~~~~- 145 (276)
T 3no2_A 77 -CEMQTARILPDGNALVAWCG--HPSTILEVNMKGEVLSKTEFET-GIERPHA--QFRQINKNK---KGN-YLVPLFAT- 145 (276)
T ss_dssp -CEEEEEEECTTSCEEEEEES--TTEEEEEECTTSCEEEEEEECC-SCSSGGG--SCSCCEECT---TSC-EEEEETTT-
T ss_pred -ccccccEECCCCCEEEEecC--CCCEEEEEeCCCCEEEEEeccC-CCCcccc--cccCceECC---CCC-EEEEecCC-
Confidence 23456788999995544322 1457888998665554443111 1111110 011223332 555 44443333
Q ss_pred EEEEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 380 RSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 380 ~~~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..|+.+|.+++.+.....+..........++.+++..... ..|+.+|.++|+.
T Consensus 146 -~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~---~~v~~~d~~tG~~ 198 (276)
T 3no2_A 146 -SEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDA---HCFVQLNLESNRI 198 (276)
T ss_dssp -TEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTT---SEEEEECTTTCCE
T ss_pred -CEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCC---CeEEEEeCcCCcE
Confidence 4688889985555555544332222234455565554432 4699999887763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0064 Score=61.61 Aligned_cols=149 Identities=8% Similarity=0.046 Sum_probs=80.1
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
+.|++++...++|+++|.++ +..+.+... ......+++|||+ | |+.+.... ...|++++..+++
T Consensus 43 g~lyv~d~~~~~I~~~d~~g--~~~~~~~~~-----~~p~gia~~~dG~-l-~vad~~~~-----~~~v~~~d~~~g~-- 106 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDG--NQQIHATVE-----GKVSGLAFTSNGD-L-VATGWNAD-----SIPVVSLVKSDGT-- 106 (306)
T ss_dssp SCEEEEETTTTEEEEECTTC--CEEEEEECS-----SEEEEEEECTTSC-E-EEEEECTT-----SCEEEEEECTTSC--
T ss_pred CCEEEEeCCCCeEEEECCCC--ceEEEEeCC-----CCceeEEEcCCCc-E-EEEeccCC-----cceEEEEcCCCCe--
Confidence 36888877778999999875 433323222 2346678999999 3 33331111 1468999988887
Q ss_pred ccEEccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecC-----CCCCccccCcCce
Q 004735 235 EPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-----FDPTIVESPTEPK 307 (732)
Q Consensus 235 ~~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~ 307 (732)
.+.+.. ...+..++...+++ .++... . ....||++|.. +++.+ +..... ...........+
T Consensus 107 -~~~~~~~~~~~~~~g~~~~~~~-~~~v~d--~-----~~g~i~~~d~~-~~~~~-v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 107 -VETLLTLPDAIFLNGITPLSDT-QYLTAD--S-----YRGAIWLIDVV-QPSGS-IWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp -EEEEEECTTCSCEEEEEESSSS-EEEEEE--T-----TTTEEEEEETT-TTEEE-EEEECGGGSCSSTTCCSCSEEEE-
T ss_pred -EEEEEeCCCccccCcccccCCC-cEEEEE--C-----CCCeEEEEeCC-CCcEe-EEEECCccccccccCCCCcCCCc-
Confidence 555542 22233445545544 454433 1 13469999976 44221 111110 000000111223
Q ss_pred eCCCCcEEEEEeccCCeeeEEEEeccC
Q 004735 308 WSSKGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 308 wspDg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
++||+.+|.++. +..+|+++++++
T Consensus 175 -s~dg~~lyv~d~--~~~~I~~~~~~~ 198 (306)
T 2p4o_A 175 -KRFGNFLYVSNT--EKMLLLRIPVDS 198 (306)
T ss_dssp -EEETTEEEEEET--TTTEEEEEEBCT
T ss_pred -CcCCCEEEEEeC--CCCEEEEEEeCC
Confidence 788884445554 345688888865
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.059 Score=57.50 Aligned_cols=227 Identities=9% Similarity=0.046 Sum_probs=125.0
Q ss_pred CceeEEECCEEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
+.+..++++ ++++...++.|.++|+.+ ++. ..+... ........| +++.++.... . ..|.+
T Consensus 162 v~~~~~~~~-~l~s~~~dg~i~vwd~~~--~~~~~~~~~h----~~~v~~~~~--~~~~l~s~s~-d--------g~i~~ 223 (445)
T 2ovr_B 162 VWSSQMRDN-IIISGSTDRTLKVWNAET--GECIHTLYGH----TSTVRCMHL--HEKRVVSGSR-D--------ATLRV 223 (445)
T ss_dssp EEEEEEETT-EEEEEETTSCEEEEETTT--TEEEEEECCC----SSCEEEEEE--ETTEEEEEET-T--------SEEEE
T ss_pred EEEEEecCC-EEEEEeCCCeEEEEECCc--CcEEEEECCC----CCcEEEEEe--cCCEEEEEeC-C--------CEEEE
Confidence 345556655 445555778899999987 443 333322 223344445 4666554443 2 58899
Q ss_pred EEcCCCCccccE-EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 226 IALNGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 226 ~d~~~~~~~~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
+|+.+++ .. .+...........| ||+.|+..+. ...|.++|+. +++. ...+.+.. ..+.
T Consensus 224 wd~~~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~--------dg~i~iwd~~-~~~~--~~~~~~~~----~~v~ 283 (445)
T 2ovr_B 224 WDIETGQ---CLHVLMGHVAAVRCVQY--DGRRVVSGAY--------DFMVKVWDPE-TETC--LHTLQGHT----NRVY 283 (445)
T ss_dssp EESSSCC---EEEEEECCSSCEEEEEE--CSSCEEEEET--------TSCEEEEEGG-GTEE--EEEECCCS----SCEE
T ss_pred EECCCCc---EEEEEcCCcccEEEEEE--CCCEEEEEcC--------CCEEEEEECC-CCcE--eEEecCCC----CceE
Confidence 9998876 33 33333333444444 8888876652 2348999988 6654 44455443 4455
Q ss_pred CceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 305 ~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
.+.| ||+.+++... .+ .|..+|+.+++........ .... ..+.+ +++. +++...+|.-.+|
T Consensus 284 ~~~~--~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~---~~~v-----~~~~~-----~~~~-l~~~~~dg~i~vw 344 (445)
T 2ovr_B 284 SLQF--DGIHVVSGSL-DT--SIRVWDVETGNCIHTLTGH---QSLT-----SGMEL-----KDNI-LVSGNADSTVKIW 344 (445)
T ss_dssp EEEE--CSSEEEEEET-TS--CEEEEETTTCCEEEEECCC---CSCE-----EEEEE-----ETTE-EEEEETTSCEEEE
T ss_pred EEEE--CCCEEEEEeC-CC--eEEEEECCCCCEEEEEcCC---cccE-----EEEEE-----eCCE-EEEEeCCCeEEEE
Confidence 6667 7774445444 34 3666788777654332211 1111 11122 4444 4455556655554
Q ss_pred EEECCCCce-EEecc---CCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 385 ILDDFGHSL-SLLDI---PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 385 ~~~~~~~~~-~~lt~---~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
++.+++. ..+.. ....+..+..++ .+++.++.. ..|.++|+.+++.
T Consensus 345 --d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~d---g~v~iwd~~~~~~ 394 (445)
T 2ovr_B 345 --DIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDD---GTVKLWDLKTGEF 394 (445)
T ss_dssp --ETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETT---SEEEEEETTTCCE
T ss_pred --ECCCCcEEEEEccCCCCCCCEEEEEECC-CEEEEEeCC---CeEEEEECCCCce
Confidence 7666654 44443 334466664444 445555433 4688889888764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0015 Score=71.77 Aligned_cols=222 Identities=8% Similarity=-0.043 Sum_probs=115.3
Q ss_pred eCCCCeEEEEeCCCCCCCce-----ecCCCCCCCCeEeeceeecCC------CCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 161 NYKDQRLYKHSIDSKDSSPL-----PITPDYGEPLVSYADGIFDPR------FNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~~-----~lt~~~~~~~~~~~~~~~spd------G~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
...++.|.++++++ ++.. .+... .......+|+|+ |+.|+....+ ..|.++|+.
T Consensus 179 ~s~D~tI~iWd~~~--~~~~~~~~~~l~~~----~~~V~~v~wsp~~~~~~~~~~LAs~s~D---------gtvrlWd~~ 243 (524)
T 2j04_B 179 EKHSSCIQIFKMNT--STLHCVKVQTIVHS----FGEVWDLKWHEGCHAPHLVGCLSFVSQE---------GTINFLEII 243 (524)
T ss_dssp ---CEEEEEEEEET--TTCCEEEEEEEEEC----CCSEEEEEECSSCCCSSSSCEEEEEETT---------SCEEEEECC
T ss_pred CCCCceEEEEEccC--CCCCceEEEEEEec----CCcEEEEEECCCCCCCCCCceEEEEecC---------CeEEEEEcC
Confidence 33455666777765 4321 12221 123466789987 5665555442 356677776
Q ss_pred CCCcc---------ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 230 GQNIQ---------EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 230 ~~~~~---------~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
++... +...+......+....|+|++ .|+..+ ....|.++|+. ++.. ....+.+..
T Consensus 244 ~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs--------~DgtV~lWD~~-~~~~-~~~~~~~H~---- 308 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGF--------KNGFVAEFDLT-DPEV-PSFYDQVHD---- 308 (524)
T ss_dssp CCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEE--------TTSEEEEEETT-BCSS-CSEEEECSS----
T ss_pred CCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEe--------CCCEEEEEECC-CCCC-ceEEeeccc----
Confidence 65310 011233333455677899875 566554 23458999997 5532 133344444
Q ss_pred ccCcCc--eeCCCC-cEEEEEeccCCeeeEEEEeccCCeEE-Eecccc--cccCCCceeecccceeeeeecCCCCEEEEE
Q 004735 301 ESPTEP--KWSSKG-ELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLD--AEFSRPLWVFGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 301 ~~~~~~--~wspDg-~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 374 (732)
..+..+ .|++|| +++.+... .+. |.++|+.+++.. .+.... ..+.. +.|.| +++.+ ++
T Consensus 309 ~~V~sv~~~~s~~g~~~laS~S~-D~t--vklWD~~~~~~~~~~~~~~~~~~v~~---------v~fsp---~~~~l-~s 372 (524)
T 2j04_B 309 SYILSVSTAYSDFEDTVVSTVAV-DGY--FYIFNPKDIATTKTTVSRFRGSNLVP---------VVYCP---QIYSY-IY 372 (524)
T ss_dssp SCEEEEEEECCTTSCCEEEEEET-TSE--EEEECGGGHHHHCEEEEECSCCSCCC---------EEEET---TTTEE-EE
T ss_pred ccEEEEEEEcCCCCCeEEEEecc-CCe--EEEEECCCCCcccccccccccCcccc---------eEeCC---CcCeE-EE
Confidence 456666 578998 66666555 454 555677665422 121111 01122 33432 55554 44
Q ss_pred EEECCEEEEEEEECCCCce-EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 375 YRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 375 s~~~g~~~ly~~~~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
+..++. |.++++.++.. ..+......|..+ ..+++.+++.++.. ..+.++|+..
T Consensus 373 ~~~d~t--v~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D---gtv~lwd~~~ 428 (524)
T 2j04_B 373 SDGASS--LRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD---GSLIITNAAR 428 (524)
T ss_dssp ECSSSE--EEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT---TEEECCBSCS
T ss_pred eCCCCc--EEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECC---CEEEEEechH
Confidence 444554 44457766653 5566666677777 44555555555433 2455555543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.092 Score=58.13 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=36.5
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccc-cCcCceeC---CCCc---EEEEEeccCCeeeEEEEeccCCeEE
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVE-SPTEPKWS---SKGE---LFFVTDRKNGFWNLHKWIESNNEVL 338 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~~ws---pDg~---l~~~~~~~~g~~~l~~~d~~~g~~~ 338 (732)
..|+.+|.+ +|+..+.......+ .|.. ....|... .||+ +++.... +| .||.+|.++|+..
T Consensus 272 ~~v~Ald~~-tG~~~W~~~~~~~d-~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~-~G--~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 272 MTIWGRDLD-TGMAKWGYQKTPHD-EWDFAGVNQMVLTDQPVNGKMTPLLSHIDR-NG--ILYTLNRENGNLI 339 (571)
T ss_dssp TEEEEEETT-TCCEEEEEESSTTC-SSCCCCCCCCEEEEEEETTEEEEEEEEECT-TS--EEEEEETTTCCEE
T ss_pred EEEEEEecC-CCcEEEEecCCCCc-ccccccCCCCEEEecccCCcEEEEEEEeCC-Cc--EEEEEECCCCCEE
Confidence 469999998 89886655544322 1111 22345443 3674 4455544 44 5899999888754
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0004 Score=74.13 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=79.6
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-H---------------HHHHHHHCCCEE
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-L---------------SIQYWTSRGWAF 527 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-~---------------~~~~l~~~G~~v 527 (732)
-.+... ++..+..|++...+ .....|+||++||||+........ . ....| .+-..+
T Consensus 24 Gyv~v~-~~~~lfy~f~~s~~------~~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw-~~~~~~ 95 (452)
T 1ivy_A 24 GYLKSS-GSKHLHYWFVESQK------DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSW-NLIANV 95 (452)
T ss_dssp EEEECS-TTEEEEEEEECCSS------CGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCG-GGSSEE
T ss_pred EEEeeC-CCCeEEEEEEEcCC------CCCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCcc-cccccE
Confidence 344444 57888888886543 134579999999999764321100 0 00001 134689
Q ss_pred EEEcC-CCCCCCChhhHHhhccCCCcc---cHHHHHH-HHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-----CCCc
Q 004735 528 VDVNY-GGSTGYGREFRERLLGRWGIV---DVNDCCS-CATFLVGSGKADEKRLCITGGSAGGYTTLAALA-----FRDT 597 (732)
Q Consensus 528 ~~~d~-rG~~g~g~~~~~~~~~~~~~~---~~~D~~~-~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-----~p~~ 597 (732)
+.+|. +|. |+... . ...+... ..+|... ..+|+...+.....++.|.|+|+||..+-.++. .+-.
T Consensus 96 lfiDqP~Gt-GfS~~--~--~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~ 170 (452)
T 1ivy_A 96 LYLESPAGV-GFSYS--D--DKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMN 170 (452)
T ss_dssp EEECCSTTS-TTCEE--S--SCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSC
T ss_pred EEEecCCCC-CcCCc--C--CCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccc
Confidence 99995 543 33321 1 1111111 2333333 344555544455689999999999996655543 3567
Q ss_pred ceEEEeecCcCCHH
Q 004735 598 FKAGASLYGVADLS 611 (732)
Q Consensus 598 ~~a~v~~~~~~d~~ 611 (732)
++++++.+|+.|..
T Consensus 171 l~g~~ign~~~d~~ 184 (452)
T 1ivy_A 171 LQGLAVGNGLSSYE 184 (452)
T ss_dssp EEEEEEESCCSBHH
T ss_pred cceEEecCCccChh
Confidence 89999999998754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00052 Score=71.41 Aligned_cols=257 Identities=8% Similarity=-0.051 Sum_probs=123.7
Q ss_pred CccCceEEcC-CCcEEEEeec---CCCC-CceEEEEcCCCCCCCCccc-CCCCCcccc-cccccCCceeEEECCEEEEEe
Q 004735 89 KRLGGTAVDG-HGRLIWLESR---PTEA-GRGVLVKEPAKAGDEPSDI-TPKEYAVRT-TAQEYGGGAFRIFGDTVIFSN 161 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~---~~~~-~~~~l~~~~~~~g~~~~~l-~~~~~~~~~-~~~~~g~~~~~~~~~~i~f~~ 161 (732)
..+ ++.++| ++.+|..... ...+ +.-.+..++..++.....+ ++.+ .+. ......+..+++++.++++.+
T Consensus 66 ~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~--~~~~~g~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 66 FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA--PRFSVGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS--CSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc--cccccCCCcceEEEcCCCCEEEEEc
Confidence 456 899999 8888887631 1000 1124666677654222222 1100 010 001112233444455677666
Q ss_pred CC-CCeEEE--EeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC-----CCc
Q 004735 162 YK-DQRLYK--HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-----QNI 233 (732)
Q Consensus 162 ~~-~~~l~~--~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~-----~~~ 233 (732)
.. .+.+.+ +|+.+ .+.+... +. ....|+|++.++..... ..+.++++++ ++
T Consensus 143 ~~~~~~v~V~~iD~~t----v~~i~v~----~~----~~~~p~g~~~~~~~~~d--------g~~~~vd~~~~~~~~~~- 201 (368)
T 1mda_H 143 FGSSAAAGLSVPGASD----DQLTKSA----SC----FHIHPGAAATHYLGSCP--------ASLAASDLAAAPAAAGI- 201 (368)
T ss_dssp CSSSCEEEEEETTTEE----EEEEECS----SC----CCCEEEETTEEECCCCT--------TSCEEEECCSSCCCCEE-
T ss_pred cCCCCeEEEEEEchhh----ceEEECC----Cc----eEEccCCCeEEEEEcCC--------CCEEEEECccccccCCe-
Confidence 54 356777 77752 3333221 11 12456666543322211 2344566665 33
Q ss_pred cccEEc-ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCC-----CCCcc-ccCcCc
Q 004735 234 QEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-----DPTIV-ESPTEP 306 (732)
Q Consensus 234 ~~~~~l-t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~-----~~~~~-~~~~~~ 306 (732)
+... +.--..-..|..++|+++++|++. ..++++|+. +++.+-...+.-. ...|. ......
T Consensus 202 --v~~~~t~~i~vg~~P~~~~~~~~~~~vs~---------~~V~viD~~-~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 202 --VGAQCTGAQNCSSQAAQANYPGMLVWAVA---------SSILQGDIP-AAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp --CCCCSCTTSCBCSCCEEETTTTEEEECBS---------SCCEEEECC-SSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred --EEEEeeeeeeCCCCccccccCCEEEEEcC---------CEEEEEECC-CCcceEEEEEEeccccccccccccCcceee
Confidence 1110 000000012323888999999874 238999986 4332111111100 00000 111226
Q ss_pred eeCCCCc-EEEEEeccC-C-----eeeEEEEeccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEE-E
Q 004735 307 KWSSKGE-LFFVTDRKN-G-----FWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR-Q 377 (732)
Q Consensus 307 ~wspDg~-l~~~~~~~~-g-----~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~-~ 377 (732)
.++|||+ +|+.... . + ...+..+|+++++.. .|..+. . ...+.|.+ |+++++++.+ .
T Consensus 270 ~~s~dg~~lyV~~~~-~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~---------p~gi~~s~---Dg~~l~va~~~~ 335 (368)
T 1mda_H 270 AKLKNTDGIMILTVE-HSRSCLAAAENTSSVTASVGQTSGPISNGH-D---------SDAIIAAQ---DGASDNYANSAG 335 (368)
T ss_dssp EEETTTTEEEEEEEE-CSSCTTSCEEEEEEEESSSCCEEECCEEEE-E---------ECEEEECC---SSSCEEEEEETT
T ss_pred EEcCCCCEEEEEecc-ccCcccccCCCEEEEECCCCeEEEEEECCC-C---------cceEEECC---CCCEEEEEccCC
Confidence 7999999 6655442 2 2 234558999887643 332221 1 12334443 7777777765 3
Q ss_pred CCEEEEEEEECCCCceE-Eec
Q 004735 378 NGRSYLGILDDFGHSLS-LLD 397 (732)
Q Consensus 378 ~g~~~ly~~~~~~~~~~-~lt 397 (732)
+ ..|.++|++++++. .+.
T Consensus 336 ~--~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 336 T--EVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp T--TEEEEEESSSCEEEEECC
T ss_pred C--CeEEEEECCCCcEEEEEE
Confidence 4 46788899887753 444
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.13 Score=58.37 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=31.9
Q ss_pred EEEEEEECCCCceEE-eccCCCceE-EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 381 SYLGILDDFGHSLSL-LDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 381 ~~ly~~~~~~~~~~~-lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..|+.+|+.+|++.- +..+..... .++..+ .++|+.+ ....|+.+|.++|+.
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag-glvf~gt---~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAG-NLVFEGS---ADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETT-TEEEEEC---TTSEEEEEETTTCCE
T ss_pred eeEEEEECCCCCeEeEccCCCCccCccceECC-CEEEEEC---CCCcEEEEECCCCcc
Confidence 669999999987642 332221222 334444 4556553 235799999999973
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0019 Score=68.28 Aligned_cols=66 Identities=18% Similarity=0.052 Sum_probs=42.1
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
+++++.+...|+.|.++|+.++ +....+... .......+|+|++..++++...+ ..|.++|+.+++
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~-~~~~~~~~~----~~~v~~v~~~p~~~~~l~~~~~d--------~~v~~wd~~t~~ 220 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDE-GPILAGYPL----SSPGISVQFRPSNPNQLIVGERN--------GNIRIFDWTLNL 220 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETT-EEEEEEEEC----SSCEEEEEEETTEEEEEEEEETT--------SEEEEEETTCCC
T ss_pred CCCEEEEEECCCeEEEEECCCC-ceeeeecCC----CCCcEEEEECCCCCceEEecCCC--------CEEEEEECCCCc
Confidence 3467778778888999998651 222222222 22335678999987655555433 578888888764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.026 Score=56.20 Aligned_cols=225 Identities=11% Similarity=0.034 Sum_probs=120.1
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.+++.....+.|++++.+ ++.+.+.... .........++++|+. ++. ... ...|+++|.+ ++
T Consensus 32 ~l~v~~~~~~~v~~~~~~---~~~~~~~~~~--~~~~~~~i~~~~~g~l-~v~-~~~-------~~~v~~~d~~-g~--- 93 (300)
T 2qc5_A 32 KVWFTQHKANKISSLDQS---GRIKEFEVPT--PDAKVMCLIVSSLGDI-WFT-ENG-------ANKIGKLSKK-GG--- 93 (300)
T ss_dssp CEEEEETTTTEEEEECTT---SCEEEEECSS--TTCCEEEEEECTTSCE-EEE-ETT-------TTEEEEECTT-SC---
T ss_pred CEEEEcCCCCeEEEECCC---CceEEEECCC--CCCcceeEEECCCCCE-EEE-ecC-------CCeEEEECCC-CC---
Confidence 566666566789999876 3333332211 0123456678899984 333 321 2579999988 55
Q ss_pred cEEccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 236 PKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 236 ~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
.+.+.. .........++|||+ |++.. . ....|++++.+ |+..... +.... ..+..+.+++||+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~-~------~~~~i~~~~~~--g~~~~~~-~~~~~----~~~~~i~~d~~g~ 158 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGD-IWFTQ-L------NGDRIGKLTAD--GTIYEYD-LPNKG----SYPAFITLGSDNA 158 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTC-EEEEE-T------TTTEEEEECTT--SCEEEEE-CSSTT----CCEEEEEECTTSS
T ss_pred eEEecCCCCCCCCccceECCCCC-EEEEc-c------CCCeEEEECCC--CCEEEcc-CCCCC----CCceeEEECCCCC
Confidence 443321 223345567889986 54443 2 13458888765 5543222 22222 4456778899998
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
+++... +...|+++++ +++...+... .....+ ..+.+. .++.+|++.... ..|++++. +++.
T Consensus 159 l~v~~~---~~~~i~~~~~-~g~~~~~~~~-~~~~~~------~~i~~d----~~g~l~v~~~~~--~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 159 LWFTEN---QNNSIGRITN-TGKLEEYPLP-TNAAAP------VGITSG----NDGALWFVEIMG--NKIGRITT-TGEI 220 (300)
T ss_dssp EEEEET---TTTEEEEECT-TCCEEEEECS-STTCCE------EEEEEC----TTSSEEEEETTT--TEEEEECT-TCCE
T ss_pred EEEEec---CCCeEEEECC-CCcEEEeeCC-CCCCCc------ceEEEC----CCCCEEEEccCC--CEEEEEcC-CCcE
Confidence 665443 2345889988 5555544311 011111 122332 344566654322 35888888 4555
Q ss_pred EEecc--CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 394 SLLDI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 394 ~~lt~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
..... ....+..+ ..+++.+++... ....|+++|. +++
T Consensus 221 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~---~~~~i~~~~~-~g~ 261 (300)
T 2qc5_A 221 SEYDIPTPNARPHAITAGKNSEIWFTEW---GANQIGRITN-DNT 261 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEET---TTTEEEEECT-TSC
T ss_pred EEEECCCCCCCceEEEECCCCCEEEecc---CCCeEEEECC-CCc
Confidence 44432 23345555 333455444332 2356888887 344
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 732 | ||||
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 3e-28 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 6e-25 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 5e-23 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 2e-22 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 1e-20 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 1e-19 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 4e-19 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 1e-18 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 5e-18 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 4e-17 | |
| d2jbwa1 | 360 | c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine h | 7e-16 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 5e-13 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 6e-12 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 2e-11 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 3e-11 | |
| d1jjia_ | 311 | c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeogl | 3e-11 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 5e-11 | |
| d1jfra_ | 260 | c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [Ta | 2e-09 | |
| d1jjfa_ | 255 | c.69.1.2 (A:) Feruloyl esterase domain of the cell | 2e-09 | |
| d1qlwa_ | 318 | c.69.1.15 (A:) A novel bacterial esterase {Alcalig | 1e-08 | |
| d2pbla1 | 261 | c.69.1.2 (A:1-261) Uncharacterized protein TM1040_ | 2e-08 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 3e-08 | |
| d1dina_ | 233 | c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas | 6e-08 | |
| d1u4na_ | 308 | c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus a | 8e-08 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 5e-07 | |
| d2h1ia1 | 202 | c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cer | 1e-06 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 1e-06 | |
| d1lzla_ | 317 | c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [Ta | 3e-06 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 1e-05 | |
| d1auoa_ | 218 | c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluor | 9e-05 | |
| d2r8ba1 | 203 | c.69.1.14 (A:44-246) Uncharacterized protein Atu24 | 1e-04 | |
| d1jkma_ | 358 | c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, | 1e-04 | |
| d3b5ea1 | 209 | c.69.1.14 (A:7-215) Uncharacterized protein Mll837 | 1e-04 | |
| d1uxoa_ | 186 | c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus | 4e-04 | |
| d1k8qa_ | 377 | c.69.1.6 (A:) Gastric lipase {Dog (Canis familiari | 6e-04 | |
| d1fj2a_ | 229 | c.69.1.14 (A:) Acyl protein thioesterase 1 {Human | 0.003 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (279), Expect = 3e-28
Identities = 41/258 (15%), Positives = 82/258 (31%), Gaps = 15/258 (5%)
Query: 464 IEFPT-EVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQY 519
+E+ E+ P+ + PLL+ G P S++ ++
Sbjct: 3 VEYRDIEIDDYNLPMQILKPAT----FTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVM 58
Query: 520 WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCIT 579
+S G V + GS G + + R G+++ D ++ D R+ +
Sbjct: 59 VSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVF 118
Query: 580 GGSAGGYTTLAALAFRD-----TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD 634
G GGY + L + TF G++L + D + + E + + +
Sbjct: 119 GKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKL--YASAFSERYLGLHGLDNRAY 176
Query: 635 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 694
K ++ D+ + ++ L +L Y E H F
Sbjct: 177 EMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFT 236
Query: 695 KAENIKFTLEQQMVFFAR 712
+ + + FF
Sbjct: 237 SSSLKQHLYRSIINFFVE 254
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 102 bits (254), Expect = 6e-25
Identities = 52/258 (20%), Positives = 87/258 (33%), Gaps = 10/258 (3%)
Query: 460 LP-ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNL 515
+P + ++F + K + P + +K PLL+ + GP S+ LN
Sbjct: 1 MPSKKLDF-IILNETKFWYQMILPPH----FDKSKKYPLLLDVYAGPCSQKADTVFRLNW 55
Query: 516 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575
+ ++ + GS G + + R G +V D A G D KR
Sbjct: 56 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 115
Query: 576 LCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD 634
+ I G S GGY T L FK G ++ V+ + + +
Sbjct: 116 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 175
Query: 635 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 694
+ +L G D V Q+ +I KAL + G+ + Y E HG
Sbjct: 176 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIA 235
Query: 695 KAENIKFTLEQQMVFFAR 712
+ + F +
Sbjct: 236 SSTAHQHIYTHMSHFIKQ 253
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 98.6 bits (244), Expect = 5e-23
Identities = 48/315 (15%), Positives = 86/315 (27%), Gaps = 57/315 (18%)
Query: 440 DFKVVWSSSPDTLKYKSYFSLPELIEFPTE-----------VPGQKAYAYYYPPSNPIYQ 488
DF W + + + E +E + GQ+ + P
Sbjct: 22 DFDEFWEETLAESEKFPLDPVFERMESHLKTVEAYDVTFSGYRGQRIKGWLLVPKLE--- 78
Query: 489 ASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNY---------------- 532
EEK P +V+ G +W S G+ ++
Sbjct: 79 ---EEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYP 132
Query: 533 -----GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587
G+ + D + D++R+ I GGS GG
Sbjct: 133 EGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGI 192
Query: 588 TLAALAFRDTFKAGASLYGVAD-----LSMLRAETHKFESRYIDNLVGSEKDYYEKSP-- 640
LA A KA + ++ + + ++ E+ +
Sbjct: 193 ALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYF 252
Query: 641 --INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 698
+NF + P + GL D + PP Y P + Y H +
Sbjct: 253 DGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNYYAG---PKEIRIYPYNNHEGGGS-- 307
Query: 699 IKFTLEQQMVFFARV 713
F +Q+ F ++
Sbjct: 308 --FQAVEQVKFLKKL 320
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 95.0 bits (234), Expect = 2e-22
Identities = 54/264 (20%), Positives = 84/264 (31%), Gaps = 9/264 (3%)
Query: 449 PDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE 508
P+ L+ + L+ + G + Y P +V HGGP +E
Sbjct: 2 PEDLRRS--IAGSRLVWVESF-DGSRVPTYVLES------GRAPTPGPTVVLVHGGPFAE 52
Query: 509 ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 568
+ + G+ V NY GSTGYG E+R +++G ++ D + A + S
Sbjct: 53 DSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARES 112
Query: 569 GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 628
G A E + + A V M F +
Sbjct: 113 GLASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLT 172
Query: 629 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 688
GS + +SPIN VD+ P+ L D P ++ L G
Sbjct: 173 GGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPD 232
Query: 689 EQHGFRKAENIKFTLEQQMVFFAR 712
H E+ L + F A
Sbjct: 233 AGHAINTMEDAVKILLPAVFFLAT 256
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 91.3 bits (226), Expect = 1e-20
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 7/136 (5%)
Query: 570 KADEKRLCITGGSAGGY-TTLAALAFRDTFKAGASLYGVADL----SMLRAETHKFESRY 624
+ + ++G ++GGY +A+ D F G ++ +
Sbjct: 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPS 66
Query: 625 IDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE--NGLPVA 682
I + K + + + I ++ G D V P+ ++ L N V+
Sbjct: 67 ITTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVS 126
Query: 683 LVEYEGEQHGFRKAEN 698
V G H F N
Sbjct: 127 YVTTTGAVHTFPTDFN 142
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 87.6 bits (215), Expect = 1e-19
Identities = 43/273 (15%), Positives = 71/273 (26%), Gaps = 24/273 (8%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
I +P++ G K + + P + +GG ++S +
Sbjct: 8 VQIFYPSK-DGTKIPMFIVHKKG----IKLDGSHPAFLYGYGGFNISITPNYSVSRLIFV 62
Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC-CSCATFLVGSGKADEKRLCITG 580
+ V G E + + D A +L+ G KRL I G
Sbjct: 63 RHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTING 122
Query: 581 GSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEK-- 638
GS GG R + + + D K ++E
Sbjct: 123 GSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLI 182
Query: 639 --------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL-------KENGLPVAL 683
D ++L D V P + K L ++ P+ +
Sbjct: 183 KYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLI 242
Query: 684 VEYEGEQHGFRKAENIKFTLEQQMV-FFARVVG 715
HG K M F AR +
Sbjct: 243 HVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 275
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 84.8 bits (208), Expect = 4e-19
Identities = 36/234 (15%), Positives = 60/234 (25%), Gaps = 20/234 (8%)
Query: 485 PIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544
+ PE LL+ HG S IL L + + RG+ + +
Sbjct: 14 SVLARIPEAPKALLLALHGLQGS-KEHILAL-LPGYAERGFLLLAFDAPRHGEREGPPPS 71
Query: 545 RLLGRWGIVDVNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALAFRDTFKA 600
R+ + L + GGS G + LA +
Sbjct: 72 SKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRG 131
Query: 601 GASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK 660
+ G L + + E P++ G D
Sbjct: 132 VLAFIGSGFPMKLPQGQVVEDPGVLALYQAPPATRGEA-------YGGVPLLHLHGSRDH 184
Query: 661 VVPPDQARKIYKALKENGLP--VALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712
+VP + K +AL+ + +A EG H + F
Sbjct: 185 IVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPLM-----ARVGLAFLEH 233
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 85.2 bits (209), Expect = 1e-18
Identities = 57/312 (18%), Positives = 93/312 (29%), Gaps = 55/312 (17%)
Query: 440 DFKVVWSSS--------PDTLKYKSYFSLP----ELIEFPTEVPGQKAYAYYYPPSNPIY 487
DF W S + + + + + + +Y P
Sbjct: 23 DFSEFWKLSLEELAKVQAEPDLQPVDYPADGVKVYRLTYKS-FGNARITGWYAVPDK--- 78
Query: 488 QASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 547
E P +VK HG S + W G+A + G
Sbjct: 79 ----EGPHPAIVKYHGYNAS--YDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHG 132
Query: 548 GRWGIVD--------------VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593
G + D + + DE R+ +TGGS GG T+AA A
Sbjct: 133 HALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAA 192
Query: 594 FRDTFKAGASLYGV-----------ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPIN 642
D KA + Y + L + + + V + K +N
Sbjct: 193 LSDIPKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMN 252
Query: 643 FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFT 702
D+ P+++ GL DKV PP Y L+ L Y H + A
Sbjct: 253 LADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLET---KKELKVYRYFGHEYIPAFQ---- 305
Query: 703 LEQQMVFFARVV 714
+++ FF +++
Sbjct: 306 -TEKLAFFKQIL 316
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 82.3 bits (202), Expect = 5e-18
Identities = 35/277 (12%), Positives = 61/277 (22%), Gaps = 36/277 (12%)
Query: 449 PDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE 508
P+ S F F + + + P+ +P P+L G +
Sbjct: 1 PNIADKGSVFYHFSATSFDSVDGTRHYRVWTAVPNT----TAPASGYPILYMLDGNAVMD 56
Query: 509 ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 568
R L Q V V Y + + R D S
Sbjct: 57 -RLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSG 115
Query: 569 GKA--------------------DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVA 608
G D +R + G S GG L + F++ S
Sbjct: 116 GSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSYYSASP-- 173
Query: 609 DLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQAR 668
+ + + + V +
Sbjct: 174 ---------SLGRGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIH 224
Query: 669 KIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQ 705
LK+ G+ ++ HG + + L
Sbjct: 225 TTLTILKDKGVNAVFWDFPNLGHGPMFNASFRQALLD 261
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 80.4 bits (197), Expect = 4e-17
Identities = 34/277 (12%), Positives = 68/277 (24%), Gaps = 39/277 (14%)
Query: 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVN 531
GQ+ + + PP K ++ + G +Y ++ G+ +
Sbjct: 14 GQELHVWETPPKEN-----VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYD 66
Query: 532 YGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA 591
G + G + + + + S
Sbjct: 67 SLHHVGLSSGSIDEFTMTTGKNSLCTVYHW------LQTKGTQNIGLIAASLSARVAYEV 120
Query: 592 LAFRDTFKAGASLYGVADL---------------------SMLRAETHKFESRYIDNLVG 630
+ GV +L + L E HK S
Sbjct: 121 -ISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCF 179
Query: 631 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690
S ++ V S P+I F D V ++ + ++ L G
Sbjct: 180 EHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTG--HCKLYSLLGSS 237
Query: 691 HGFRKAENIKFTLEQQMVFFARVV--GHFDVADEIIP 725
H + + Q + A + G ++ + I
Sbjct: 238 HDLGENLVVLRNFYQSVTKAAIAMDGGSLEIDVDFIE 274
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 77.7 bits (190), Expect = 7e-16
Identities = 42/248 (16%), Positives = 68/248 (27%), Gaps = 27/248 (10%)
Query: 453 KYKSYFSLP-ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG 511
K S P E E + Y P P P ++ G ++ +
Sbjct: 97 KAAPLLSPPAERHELVVDG--IPMPVYVRIPEGP-------GPHPAVIMLGGLEST--KE 145
Query: 512 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571
RG A + G R V D L
Sbjct: 146 ESFQMENLVLDRGMATATFDGPGQGEMFEYKRIAGDYEKYTSAVVDL------LTKLEAI 199
Query: 572 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETH------KFESRYI 625
+ + G S GG L + A A S G +DL ET K+ S+
Sbjct: 200 RNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETPLTKESWKYVSKVD 259
Query: 626 DNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685
+ + + + +CP + G+ D+ VP + + + + LV
Sbjct: 260 TLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAEH--LNLVV 316
Query: 686 YEGEQHGF 693
+ H
Sbjct: 317 EKDGDHCC 324
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 67.3 bits (163), Expect = 5e-13
Identities = 33/230 (14%), Positives = 62/230 (26%), Gaps = 23/230 (10%)
Query: 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW 520
+ I + +E + + + E+ PL V G +++ + +
Sbjct: 15 AKEIIWKSERLKNSRRVWIFTTGD-----VTAEERPLAVLLDGEFWAQSMPV-WPVLTSL 68
Query: 521 TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCIT 579
T R V L V ++ R +
Sbjct: 69 THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVA 128
Query: 580 GGSAGGYTTLAA-LAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEK 638
G S GG + L A L + + F S G + E EK
Sbjct: 129 GQSFGGLSALYAGLHWPERFGCVLSQSGS--------------YWWPHRGGQQEGVLLEK 174
Query: 639 SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 688
V I+L G+ + ++ + +Y L + + +G
Sbjct: 175 LKAGEVSAEGLRIVLEAGIREPMIMR-ANQALYAQLHPIKESIFWRQVDG 223
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 65.7 bits (159), Expect = 6e-12
Identities = 39/292 (13%), Positives = 77/292 (26%), Gaps = 67/292 (22%)
Query: 481 PPSNPIYQASPEEKPPLLVKS---HGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537
+ Q P++ + P G Y+ +RG+A + V G+
Sbjct: 90 SHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRS 149
Query: 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD--------------EKRLCITGGSA 583
+ + +L G +A ++ +TG S
Sbjct: 150 SDGFQTS-----GDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSY 204
Query: 584 GGYTTLAALAF-RDTFKAGASLYGVADLSMLRAETHKFESR------------------- 623
G A + + + G++ E S
Sbjct: 205 LGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRN 264
Query: 624 -----------------------YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK 660
+ +++++ + DK +++ GL+D
Sbjct: 265 LDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDW 324
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712
V P+QA +KAL E + G ++I F E +F
Sbjct: 325 NVTPEQAYNFWKALPEGH-AKHAFLHRGAHIYMNSWQSIDF-SETINAYFVA 374
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 63.1 bits (152), Expect = 2e-11
Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 32/237 (13%)
Query: 485 PIYQASPEEKPPLLVKSHGGP-TSEARGILNLS--IQYWTSRGWAFVDVNYGGSTGYGRE 541
+ S P L G + G + +++ G + V G S+ Y
Sbjct: 24 KVQFQSGGANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDW 83
Query: 542 FRERLLGRWGIVDVNDC---CSCATFLVGSGKADEKRLCITGGSAGGY-TTLAALAFRDT 597
++ + +L + + G S A+
Sbjct: 84 YQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQ 143
Query: 598 FKAGASLYGVADLS------MLRAETHKFESRYIDNLVGSEKD--YYEKSPINFVDKF-- 647
F ++ G+ D S ++ ++ G ++D + P+ V K
Sbjct: 144 FVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIA 203
Query: 648 -SCPIILFQGLEDKVVPP--------------DQARKIYKALKENGLPVALVEYEGE 689
+ + ++ G K A G + ++
Sbjct: 204 NNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDS 260
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 63.6 bits (153), Expect = 3e-11
Identities = 28/152 (18%), Positives = 45/152 (29%), Gaps = 13/152 (8%)
Query: 472 GQKAYAYYYPPSNP-----IYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA 526
G K Y P N + +P + R +L + G+
Sbjct: 38 GVKLYTVIVIPKNARNAPILLTRTPYNAKG--RANRVPNALTMREVLPQGDDVFVEGGYI 95
Query: 527 FVDVNYGGSTGYGREFR-----ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
V + G G ++ L + D +LV + R+ +TG
Sbjct: 96 RVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGS 155
Query: 582 SAGGYTTLAALAFR-DTFKAGASLYGVADLSM 612
S G+T + AL K A + D M
Sbjct: 156 SYEGFTVVMALLDPHPALKVAAPESPMVDGWM 187
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 62.8 bits (151), Expect = 3e-11
Identities = 35/228 (15%), Positives = 63/228 (27%), Gaps = 32/228 (14%)
Query: 486 IYQASPEEKPPLLVKSHGG--PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543
+YQ + P+LV HGG L + V V+Y + +
Sbjct: 72 VYQ--QKPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHKFP-- 127
Query: 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 603
+ D D + D ++ + G SAGG A
Sbjct: 128 ------AAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFI 181
Query: 604 LYGVADLSMLRAETHKFESRYIDNLV------------------GSEKDYYEKSPINFVD 645
+ + ++ + +K S I
Sbjct: 182 KHQILIYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADL 241
Query: 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
+ P ++ D + D+ + L+ G+ ++V Y G HGF
Sbjct: 242 ENLPPALIITAEYDPLR--DEGEVFGQMLRRAGVEASIVRYRGVLHGF 287
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 5e-11
Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 20/239 (8%)
Query: 487 YQASPEEKPPLLVKSHGG-------PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539
+Q + ++ HGG ++ + N T + Y S
Sbjct: 23 FQEISQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT 82
Query: 540 REFRERLLGRWGIVDVNDCCSCATFL----VGSGKADEKRLCITGGSAGGYTTLAAL-AF 594
V + + VG+ + + +
Sbjct: 83 NPRNLYDAVSNITRLVKEKGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGL 142
Query: 595 RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPI------NFVDKFS 648
K L G+ L L E +++ + Y E+ + +FS
Sbjct: 143 LQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFS 202
Query: 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG--FRKAENIKFTLEQ 705
+ L D+++ Q + L++ L L + H ++ + K+ +
Sbjct: 203 IDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYKNGKVAKYIFDN 261
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Score = 56.9 bits (136), Expect = 2e-09
Identities = 33/241 (13%), Positives = 62/241 (25%), Gaps = 47/241 (19%)
Query: 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSI 517
++ + G YYP S + + +V S G + +
Sbjct: 21 YATSQTSVSSLVASGFGGGTIYYPTS------TADGTFGAVVISPGFTAY--QSSIAWLG 72
Query: 518 QYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 577
S+G+ ++ + ++ D + + + + D RL
Sbjct: 73 PRLASQGFVVFTIDTNTTLDQPDSRG------RQLLSALDYLTQRSSV--RTRVDATRLG 124
Query: 578 ITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYE 637
+ G S GG +L A R + KA
Sbjct: 125 VMGHSMGGGGSLEAAKSRTSLKAAI-------------------------------PLTG 153
Query: 638 KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
+ + P ++ D V P K + L A +E G H
Sbjct: 154 WNTDKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTS 213
Query: 698 N 698
+
Sbjct: 214 D 214
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Score = 56.2 bits (134), Expect = 2e-09
Identities = 30/238 (12%), Positives = 57/238 (23%), Gaps = 31/238 (13%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-----RGILNLS 516
I + + A Y P S ++K +L HG SE G N+
Sbjct: 23 VNISYFSTATNSTRPARVYLPPG----YSKDKKYSVLYLLHGIGGSENDWFEGGGRANVI 78
Query: 517 IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576
+ G + +T + +N E R
Sbjct: 79 ADNLIAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYIESNYSVYTDREHRA 138
Query: 577 CITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYY 636
GG + L D F + S + +
Sbjct: 139 IAGLSMGGGQSFNIGLTNLDKFAYIGPI-----------------SAAPNTY---PNERL 178
Query: 637 EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 694
+ + + G D ++ +++++ N + +G H F
Sbjct: 179 FPDGGKAAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQGGGHDFN 234
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 29/274 (10%), Positives = 54/274 (19%), Gaps = 48/274 (17%)
Query: 456 SYFSLPELIEFPTEVPGQ-----KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR 510
+ L P + Y Y P K + HG +
Sbjct: 22 RDVTSETLSLSPKYDAHGTVTVDQMYVRYQIPQRA--------KRYPITLIHGCCLTGMT 73
Query: 511 GILNLS-----IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVND-------C 558
+Y+ +G++ ++ G + + G +
Sbjct: 74 WETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLGKAPASSLPDLFAAG 133
Query: 559 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETH 618
A + G T L D + + A
Sbjct: 134 HEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL 193
Query: 619 KFESRYIDNLVG------------------SEKDYYEKSPINFVDKFSCPIILFQGLEDK 660
+ G S + P + S P+++ G +
Sbjct: 194 DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIE 253
Query: 661 VVPPD-----QARKIYKALKENGLPVALVEYEGE 689
P AL G L+
Sbjct: 254 EFPRWAPRLKACHAFIDALNAAGGKGQLMSLPAL 287
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Score = 53.5 bits (127), Expect = 2e-08
Identities = 30/208 (14%), Positives = 61/208 (29%), Gaps = 22/208 (10%)
Query: 486 IYQASPEEKPPLLVKSHGGP-TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544
++ V HGG + + + S+GWA +Y
Sbjct: 54 LFLPEGTPVGLF-VFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRISEI- 111
Query: 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-RDTFKAGAS 603
+ + + K + + + G SAGG+ L GA
Sbjct: 112 -------------TQQISQAVTAAAKEIDGPIVLAGHSAGGHLVARMLDPEVLPEAVGAR 158
Query: 604 LYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVP 663
+ V +S L + + +SP+ +++ + ++ G ++
Sbjct: 159 IRNVVPISPLSDLRPLLRTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAF 218
Query: 664 PDQARKIYKALKENGLPVALVEYEGEQH 691
DQA + +A V + H
Sbjct: 219 LDQAIWLVEAWD-----ADHVIAFEKHH 241
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 54.4 bits (129), Expect = 3e-08
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 22/156 (14%)
Query: 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG---------GPTSEARGILNLSIQYWTS 522
G K + P + P+++ + + +L+ +
Sbjct: 34 GVKLHTVIVLPKGA-------KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVE 86
Query: 523 RGWAFVDVNYGGSTGYGREFR-----ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 577
G+ V + G G ++ L + D +LV + ++
Sbjct: 87 GGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVG 146
Query: 578 ITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSM 612
+ G S G+T + AL K + D M
Sbjct: 147 MIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWM 182
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Score = 52.0 bits (123), Expect = 6e-08
Identities = 33/234 (14%), Positives = 63/234 (26%), Gaps = 35/234 (14%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHG--GPTSEARGILNLSIQY 519
E I + G A P+ + P++V + G + R + +
Sbjct: 4 EGISIQSY-DGHTFGALVGSPA--------KAPAPVIVIAQEIFGVNAFMRET----VSW 50
Query: 520 WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCIT 579
+G+A V + G + + VG +A +
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQ 110
Query: 580 GGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKS 639
S G G+ + A ++ + +
Sbjct: 111 PYSNGKV-------------------GLVGYCLGGALAFLVAAKGYVDRAVGYYGVGLEK 151
Query: 640 PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
+N V + P + G +D VP + I + N + + YE H F
Sbjct: 152 QLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHWYEEAGHSF 204
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Score = 52.2 bits (123), Expect = 8e-08
Identities = 41/252 (16%), Positives = 68/252 (26%), Gaps = 30/252 (11%)
Query: 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQY 519
+ E+ EF ++PG+ Y P P LV HG G + ++
Sbjct: 43 VAEVREFDMDLPGRTLKVRMYRPEGVEPPY------PALVYYHG------GGWVVGDLET 90
Query: 520 WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCIT 579
+ D D D R+ +
Sbjct: 91 HDPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAYDALQWIAERAADFHLDPARIAVG 150
Query: 580 GGSAGG-----YTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD 634
G SAGG + LA +Y E+ L G
Sbjct: 151 GDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAHPPASIEENAEGYLLTGGMSL 210
Query: 635 YYEKSPINFVDKFSCPIILFQGLEDKVVPP-------------DQARKIYKALKENGLPV 681
++ +N +++ + P D P D + +AL + G+ V
Sbjct: 211 WFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLRDVGKLYAEALNKAGVKV 270
Query: 682 ALVEYEGEQHGF 693
+ +E HGF
Sbjct: 271 EIENFEDLIHGF 282
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 50.2 bits (118), Expect = 5e-07
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 8/127 (6%)
Query: 486 IYQASPEEKPPLLVKSH--GGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543
+Y+ + P+L+ + A + + + G+A V + G EF
Sbjct: 22 LYRPDADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEFV 81
Query: 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 603
+ D + D G AA++ KA A
Sbjct: 82 PHVDDEADAEDTLSWILEQAW------CDGNVGMFGVSYLGVTQWQAAVSGVGGLKAIAP 135
Query: 604 LYGVADL 610
ADL
Sbjct: 136 SMASADL 142
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 24/214 (11%), Positives = 52/214 (24%), Gaps = 30/214 (14%)
Query: 486 IYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543
++Q + P+L+ HG +E + + + + G + R
Sbjct: 5 VFQKGKDTSKPVLLLLHGTGGNELDLLPLAEIVDSEASVLSVRGNVLENGMPRFFRRLAE 64
Query: 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 603
I + K D + G S G + L + GA
Sbjct: 65 GIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAV 124
Query: 604 LYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVP 663
L+ + + + + + G D +
Sbjct: 125 LHH---------------------------PMVPRRGMQLANLAGKSVFIAAGTNDPICS 157
Query: 664 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
++ ++ L+ V + H E
Sbjct: 158 SAESEELKVLLENANANVTMHWENRG-HQLTMGE 190
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 31/227 (13%)
Query: 494 KPPLLVKSHG-GPTSEARGILNLS--IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550
P + + + + +G + V GG+ + + +W
Sbjct: 26 GPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPA-GGAYSMYTNWEQDGSKQW 84
Query: 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-ALAFRDTFKAGASLYGVAD 609
+ L + G + GGY +A A D F S+ G
Sbjct: 85 DTFLSAELPDW---LAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLY 141
Query: 610 LS------MLRAETHKFESRYIDNLVGSEKD--YYEKSPINFVDKFSC---PIILFQGLE 658
S + A +F + + G+ + + P + + ++
Sbjct: 142 PSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTN 201
Query: 659 DKVVPP-----------DQARKIYKALKE-NGLPVALVEYEGEQHGF 693
P +R Y + G +G+
Sbjct: 202 PGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHNGHFDFPASGDNGW 248
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 32/254 (12%), Positives = 57/254 (22%), Gaps = 35/254 (13%)
Query: 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWT 521
+ P + + P N P+L+ HG G + +
Sbjct: 51 RELSAPGLDGDPEVKIRFVTPDNT------AGPVPVLLWIHG------GGFAIGTAESSD 98
Query: 522 SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGG 581
+ D D R+ + G
Sbjct: 99 PFCVEVARELGFAVANVEYRLAPETTFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQ 158
Query: 582 SAGGYTTLA-ALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD------ 634
SAGG L RD + + + + ++D + +
Sbjct: 159 SAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWK 218
Query: 635 ---------------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGL 679
+P D P +E D+ + L + G+
Sbjct: 219 YYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDP-LRDEGIEYALRLLQAGV 277
Query: 680 PVALVEYEGEQHGF 693
V L + G HG
Sbjct: 278 SVELHSFPGTFHGS 291
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 32/255 (12%), Positives = 62/255 (24%), Gaps = 37/255 (14%)
Query: 471 PGQKAYAYYYPPSN----PIYQASPEEKPPLLVKSHG-GPTSEARGILNLS--IQYWTSR 523
PG Y PS I P + G + G + + +
Sbjct: 2 PGLP-VEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQS 60
Query: 524 GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC---CSCATFLVGSGKADEKRLCITG 580
G + + G S+ Y ++ + +L + G
Sbjct: 61 GLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVG 120
Query: 581 GSAGGYTTLA-ALAFRDTFKAGASLYGVADLSMLRAETHKFESRYI------DNLVGSEK 633
S G + L A + F ASL G + S T + +++ G
Sbjct: 121 LSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSS 180
Query: 634 D--YYEKSPINFVDKFSC---PIILFQGLEDKVVPP--------------DQARKIYKAL 674
D + P+ + + I ++ G +
Sbjct: 181 DPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTY 240
Query: 675 KENGLPVALVEYEGE 689
+G + +
Sbjct: 241 AADGGRNGVFNFPPN 255
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Score = 41.9 bits (97), Expect = 9e-05
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
P + G D VV R ++ LK G+ V EY H E
Sbjct: 159 PALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYPMG-HEVLPQE 205
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 30/225 (13%), Positives = 53/225 (23%), Gaps = 40/225 (17%)
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
+Y + PL V HG + + +
Sbjct: 5 SYFHKSRAGVA--------GAPLFVLLHGTGGD-ENQFFDFGARLLPQATILSPVGDVSE 55
Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA--DEKRLCITGGSAGGYTTLAAL 592
R G + +VD+ + + + + G S G L
Sbjct: 56 HGAARFFRRTGE-GVYDMVDLERATGKMADFIKANREHYQAGPVIGLGFSNGANILANVL 114
Query: 593 AFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPII 652
+ A L P K + ++
Sbjct: 115 IEQPELFDAAVLMH---------------------------PLIPFEPKISPAKPTRRVL 147
Query: 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
+ G D + P + + ++LK G V V + G H R E
Sbjct: 148 ITAGERDPICPVQLTKALEESLKAQGGTVETVWHPGG-HEIRSGE 191
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} Length = 358 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 639 SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
+ P ++ D D+ + L G+ VA G HG
Sbjct: 276 FASEDELRGLPPFVVAVNELD--PLRDEGIAFARRLARAGVDVAARVNIGLVHGA 328
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/213 (10%), Positives = 41/213 (19%), Gaps = 31/213 (14%)
Query: 487 YQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544
+ +E L HG E + T G + R
Sbjct: 15 LLGAGKESRECLFLLHGSGVDETTLVPLARRIAPTATLVAARGRIPQEDGFRWFERIDPT 74
Query: 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASL 604
R + + + + + G S G + + A+L
Sbjct: 75 RFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAAL 134
Query: 605 YGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPP 664
+ D ++ G D+ P
Sbjct: 135 LR---------------------------PMPVLDHVPATDLAGIRTLIIAGAADETYGP 167
Query: 665 DQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697
+ L +G V H +
Sbjct: 168 -FVPALVTLLSRHGAEVDARIIPSG-HDIGDPD 198
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 21/200 (10%), Positives = 48/200 (24%), Gaps = 36/200 (18%)
Query: 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 553
K ++ HG S + + G +N E L +
Sbjct: 2 KQVYII--HGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQPRLEDWLDTLSLYQ-- 57
Query: 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML 613
+ + S G L L A +
Sbjct: 58 ----------------HTLHENTYLVAHSLGCPAILRFLEHLQLRAALGGII-------- 93
Query: 614 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673
++ + L ++ + + + + +D++VP ++ + +
Sbjct: 94 ---LVSGFAKSLPTLQMLDEFTQGSFDHQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQ 150
Query: 674 LKENGLPVALVEYEGEQHGF 693
+ AL E + H
Sbjct: 151 -----IDAALYEVQHGGHFL 165
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Score = 40.5 bits (93), Expect = 6e-04
Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 3/92 (3%)
Query: 600 AGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLED 659
AG S+ V S + + + P + PI ++ G D
Sbjct: 265 AGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGND 324
Query: 660 KVVPPDQARKIYKALKENGLPVALVEYEGEQH 691
+ P + L + + H
Sbjct: 325 LLADPHDVDLLLSKLPNL---IYHRKIPPYNH 353
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.003
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 649 CPIILFQGLEDKVVPPDQARKIYKALKE--NGLPVALVEYEGEQHGFRKAE 697
I+ G D +VP + LK N V YEG H + E
Sbjct: 164 ISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQE 214
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 732 | |||
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.97 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.97 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.93 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.92 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.91 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.91 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.9 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.87 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.87 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.86 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.85 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.84 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.83 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.83 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.83 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.83 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.83 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.82 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.82 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.82 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.82 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.8 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.8 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.8 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.8 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.79 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.78 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.78 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.78 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.77 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.76 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.76 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.75 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.75 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.74 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.74 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.74 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.74 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.74 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.74 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.73 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.73 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.72 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.72 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.72 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.71 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.71 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.7 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.7 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.7 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.69 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.69 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.69 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.69 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.68 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.68 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.68 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.67 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.65 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.65 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.65 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.63 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.63 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.62 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.62 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.59 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.58 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.57 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.56 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.52 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.51 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.48 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.38 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.37 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.33 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.25 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.24 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 99.23 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 99.21 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.21 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 99.16 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 99.14 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.13 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 99.12 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.08 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.07 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.07 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 99.06 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.93 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.92 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.89 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.83 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.8 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.79 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.78 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.78 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.77 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.71 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.69 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.69 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.67 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.65 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.6 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.6 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.59 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.56 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.56 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.56 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.53 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.53 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.53 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.51 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.51 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.47 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.45 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.45 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.43 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.4 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.4 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.38 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.35 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.35 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.34 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.33 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.33 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.31 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.31 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.29 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.29 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.29 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.23 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.23 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.23 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.22 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.22 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.21 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 98.2 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.2 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.15 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.09 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.07 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.01 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 98.01 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.95 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.89 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.86 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.85 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 97.8 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.67 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.64 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.61 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.47 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 97.43 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.42 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.35 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.31 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.28 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.22 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.19 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.85 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 96.71 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.71 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 96.67 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.58 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 96.54 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.53 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.34 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.22 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.55 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.47 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.14 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.83 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.98 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 92.91 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.53 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.44 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 91.86 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.66 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.22 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 89.4 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 88.8 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 87.76 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 86.27 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 84.53 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 84.27 | |
| d1cexa_ | 197 | Cutinase {Fungus (Fusarium solani), subsp. pisi [T | 83.78 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 82.93 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 82.68 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 81.45 | |
| d1qoza_ | 207 | Acetylxylan esterase {Trichoderma reesei [TaxId: 5 | 81.18 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 80.54 |
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=2.5e-33 Score=281.27 Aligned_cols=249 Identities=26% Similarity=0.348 Sum_probs=222.1
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCC
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g 537 (732)
+...+.++|++. ||.+++++++.|++ ..++.|+||++|||++......+...++.|+++||+|+++|+|+.++
T Consensus 9 ~~~~~~v~~~s~-dG~~i~~~l~~p~~------~~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~ 81 (260)
T d2hu7a2 9 IAGSRLVWVESF-DGSRVPTYVLESGR------APTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTG 81 (260)
T ss_dssp EEEEEEEEEECT-TSCEEEEEEEEETT------SCSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSS
T ss_pred cCceEEEEEECC-CCCEEEEEEEeCCC------CCCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeeccc
Confidence 345688999998 99999999999976 24667999999998888777888888999999999999999999999
Q ss_pred CChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh
Q 004735 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE 616 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~ 616 (732)
+|.++......+++..+++|+.++++++.++. +.++++|+|+|+||++++.++. +|+.+++++..+|..++..+...
T Consensus 82 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~ 159 (260)
T d2hu7a2 82 YGEEWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYEL 159 (260)
T ss_dssp SCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHT
T ss_pred cccccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhcc
Confidence 99999988888888888999999999999875 6789999999999999999888 99999999999999998887665
Q ss_pred cchhhhhhhhhhc-CChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004735 617 THKFESRYIDNLV-GSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 617 ~~~~~~~~~~~~~-~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
.......+..... .+.+.+...+|+.+++++++|+|++||++|.+||+.++.+++++|++.|+++++++|++++|++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~~ 239 (260)
T d2hu7a2 160 SDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINT 239 (260)
T ss_dssp CCHHHHHHHHHHHCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEETTCCSSCCB
T ss_pred cccccccccccccccccccccccchhhcccccCCCceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEECcCCCCCCC
Confidence 5554444444433 467888999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccHHHHHHHHHHHHHHHhC
Q 004735 696 AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 696 ~~~~~~~~~~~~~fl~~~l~ 715 (732)
.++..++++.+++||.++|+
T Consensus 240 ~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 240 MEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHhc
Confidence 88889999999999999986
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=1.6e-30 Score=260.38 Aligned_cols=249 Identities=21% Similarity=0.249 Sum_probs=207.9
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC---CcccHHHHHHHHCCCEEEEEcCCCCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~---~~~~~~~~~l~~~G~~v~~~d~rG~~g 537 (732)
.|++.|... +|.++.++++.|++.+ +++++|+||++||||+.... ..+......++++||+|+.+|+||+++
T Consensus 3 ~~~~~~~~~-~~~~~~~~l~lP~~~~----~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~ 77 (258)
T d2bgra2 3 SKKLDFIIL-NETKFWYQMILPPHFD----KSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGY 77 (258)
T ss_dssp EEEEEEEEE-TTEEEEEEEEECTTCC----TTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSS
T ss_pred ceeEEEEEe-CCcEEEEEEEECCCcC----CCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCC
Confidence 477889887 9999999999999843 46788999999998654332 334456667888999999999999999
Q ss_pred CChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh
Q 004735 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE 616 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~ 616 (732)
++..+......+++..+.+|+.++++++.+++.+|+++|+++|+|+||.+++.++. +|+++.+++..++..........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T d2bgra2 78 QGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSV 157 (258)
T ss_dssp SCHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHH
T ss_pred cchHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeeccccccccccc
Confidence 99999998988899889999999999999999999999999999999999999988 89999999999887765433211
Q ss_pred cchhhhhhhhhhcCChhhhhhcCccccCCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004735 617 THKFESRYIDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
.... .........+.+.+...+++..+++++ +|+|++||++|.+||+.++++++++|+++|+++++++|++++|+|..
T Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~~g~~H~~~~ 236 (258)
T d2bgra2 158 YTER-YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIAS 236 (258)
T ss_dssp HHHH-HHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCTTCCS
T ss_pred ccch-hcccccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Confidence 1110 000111112456777888988888876 79999999999999999999999999999999999999999999988
Q ss_pred cccHHHHHHHHHHHHHHHhC
Q 004735 696 AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 696 ~~~~~~~~~~~~~fl~~~l~ 715 (732)
.+....+.+.+.+||+++|.
T Consensus 237 ~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 237 STAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHhc
Confidence 88888999999999999996
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.9e-31 Score=267.12 Aligned_cols=238 Identities=18% Similarity=0.245 Sum_probs=194.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc---CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhc
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLL 547 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~---~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~ 547 (732)
||..++++++.|++.+ +++++|+||++||||+... ........+.|+++||+|+++|+||++++|..+.....
T Consensus 11 dg~~l~~~l~~P~~~~----~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~ 86 (258)
T d1xfda2 11 DDYNLPMQILKPATFT----DTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVR 86 (258)
T ss_dssp TTEEECCBEEBCSSCC----SSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTT
T ss_pred CCeEEEEEEEECCCcC----CCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhh
Confidence 8999999999998843 3677899999999865432 22334566789999999999999999999999988888
Q ss_pred cCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEEEeecCcCCHHHHHhhcchhhh
Q 004735 548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F----RDTFKAGASLYGVADLSMLRAETHKFES 622 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~----p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 622 (732)
.+++..+++|+.++++++++++.+|++||+++|+|+||++++.++. . +..+++.+...++..+..... ....
T Consensus 87 ~~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 163 (258)
T d1xfda2 87 RRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYAS---AFSE 163 (258)
T ss_dssp TCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBH---HHHH
T ss_pred ccchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecccc---cccc
Confidence 8888888999999999999999999999999999999999998876 3 346788888888765432111 1111
Q ss_pred hhhhhhcCChhhhhhcCccccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHH
Q 004735 623 RYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKF 701 (732)
Q Consensus 623 ~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~ 701 (732)
.++.....+.+.|...++...+.++ ++|+|++||+.|.+||++++.+++++|++.|++++++++|+++|++...+....
T Consensus 164 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~ 243 (258)
T d1xfda2 164 RYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQH 243 (258)
T ss_dssp HHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHH
T ss_pred ccccccccchHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCcCHHH
Confidence 1111111245667777787777775 689999999999999999999999999999999999999999999987777788
Q ss_pred HHHHHHHHHHHHhC
Q 004735 702 TLEQQMVFFARVVG 715 (732)
Q Consensus 702 ~~~~~~~fl~~~l~ 715 (732)
.++.+++||+++|+
T Consensus 244 ~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 244 LYRSIINFFVECFR 257 (258)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhhC
Confidence 88999999999886
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=1.2e-24 Score=219.79 Aligned_cols=252 Identities=18% Similarity=0.168 Sum_probs=189.9
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HHHHHHHCCCEEEEEcCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
++|+++|++. ||.+|+++++.|++.. ++++.|+||++||||+......+.. ....++..++.++..++++...+
T Consensus 6 ~~e~v~~~s~-DG~~i~~~l~~P~~~~----~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
T d1qfma2 6 QTVQIFYPSK-DGTKIPMFIVHKKGIK----LDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEY 80 (280)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEETTCC----CSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTT
T ss_pred EEEEEEEECC-CCCEEEEEEEEcCCCC----CCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeecccccccccc
Confidence 4688999998 9999999999998743 4678999999999988776666544 44556667888889998887777
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~ 617 (732)
+................++...++.+...+...+..+++++|+|.||+++...+. .++.+++++...++.++.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (280)
T d1qfma2 81 GETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYT 160 (280)
T ss_dssp HHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGST
T ss_pred chhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhcccc
Confidence 6666655555555556777777888888888888899999999999999988888 899999999999998876543322
Q ss_pred chhhhhhhhhhcC---Chhhhhh------cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHh-------CCCCE
Q 004735 618 HKFESRYIDNLVG---SEKDYYE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE-------NGLPV 681 (732)
Q Consensus 618 ~~~~~~~~~~~~~---~~~~~~~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~-------~g~~~ 681 (732)
............. ....+.. .+++........|+|++||++|++||+.++++++++|++ .|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~~ 240 (280)
T d1qfma2 161 IGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPL 240 (280)
T ss_dssp TGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCE
T ss_pred ccccceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCcE
Confidence 2111111000000 1122223 344444444556899999999999999999999999964 47889
Q ss_pred EEEEeCCCCccCCCcc-cHHHHHHHHHHHHHHHhCC
Q 004735 682 ALVEYEGEQHGFRKAE-NIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 682 ~~~~~~~~gH~~~~~~-~~~~~~~~~~~fl~~~l~~ 716 (732)
++++++++||+|..+. +..+.+.++++||+++|+.
T Consensus 241 ~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~ 276 (280)
T d1qfma2 241 LIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 276 (280)
T ss_dssp EEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999987653 3346677899999999984
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=4.8e-24 Score=219.53 Aligned_cols=239 Identities=22% Similarity=0.243 Sum_probs=173.9
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+.+.++|++. +|.+|+++++.|++ .++.|+||++||+++. ...+...+..|+++||+|+++|+||.+.+.
T Consensus 55 ~~~~v~~~~~-dg~~i~~~l~~P~~-------~~~~P~vv~~HG~~~~--~~~~~~~~~~la~~Gy~vi~~D~rG~G~s~ 124 (318)
T d1l7aa_ 55 KVYRLTYKSF-GNARITGWYAVPDK-------EGPHPAIVKYHGYNAS--YDGEIHEMVNWALHGYATFGMLVRGQQRSE 124 (318)
T ss_dssp EEEEEEEEEG-GGEEEEEEEEEESS-------CSCEEEEEEECCTTCC--SGGGHHHHHHHHHTTCEEEEECCTTTSSSC
T ss_pred EEEEEEEECC-CCcEEEEEEEecCC-------CCCceEEEEecCCCCC--ccchHHHHHHHHHCCCEEEEEeeCCCCCCC
Confidence 4578999998 99999999999986 5678999999998443 345666788899999999999999987764
Q ss_pred hhhHHhhccCCC--------------cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeec
Q 004735 540 REFRERLLGRWG--------------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 605 (732)
Q Consensus 540 ~~~~~~~~~~~~--------------~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~ 605 (732)
..........++ ...+.|...+++++..++.++.++++++|+|+||.+++.++....+++++++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~~~~~~~~~ 204 (318)
T d1l7aa_ 125 DTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADY 204 (318)
T ss_dssp CCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSCCSEEEEES
T ss_pred CCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcccceEEEec
Confidence 433221111111 012568888999999999999999999999999999999988444566666666
Q ss_pred CcC-CHHHHHhhcchh---hhhhhhhhcCC----h---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHH
Q 004735 606 GVA-DLSMLRAETHKF---ESRYIDNLVGS----E---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 674 (732)
Q Consensus 606 ~~~-d~~~~~~~~~~~---~~~~~~~~~~~----~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (732)
|.. ++.......... ........... . ......++...++++++|+|++||++|.+||++++.++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l 284 (318)
T d1l7aa_ 205 PYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHL 284 (318)
T ss_dssp CCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHC
T ss_pred cccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCCEEEEEECCCCCcCHHHHHHHHHHc
Confidence 643 443332221111 00001111111 1 122334566778899999999999999999999999988876
Q ss_pred HhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 675 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
. .++++++|+++||.+. .+..+++++||+++|++
T Consensus 285 ~---~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~LkG 318 (318)
T d1l7aa_ 285 E---TKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILKG 318 (318)
T ss_dssp C---SSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHCC
T ss_pred C---CCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCCC
Confidence 3 4789999999999753 46778899999999984
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.91 E-value=4.6e-24 Score=222.93 Aligned_cols=234 Identities=15% Similarity=0.106 Sum_probs=170.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
..|.++++. +|.+++++++.|++ .++.|+||++||.... ...+....+.|+++||+|+++|+||.+...
T Consensus 105 ~~e~v~ip~--dg~~l~g~l~~P~~-------~~~~P~Vi~~hG~~~~--~e~~~~~~~~l~~~G~~vl~~D~~G~G~s~ 173 (360)
T d2jbwa1 105 PAERHELVV--DGIPMPVYVRIPEG-------PGPHPAVIMLGGLEST--KEESFQMENLVLDRGMATATFDGPGQGEMF 173 (360)
T ss_dssp CEEEEEEEE--TTEEEEEEEECCSS-------SCCEEEEEEECCSSCC--TTTTHHHHHHHHHTTCEEEEECCTTSGGGT
T ss_pred CeEEeecCc--CCcccceEEEecCC-------CCCceEEEEeCCCCcc--HHHHHHHHHHHHhcCCEEEEEccccccccC
Confidence 457788886 79999999999976 5678999999997433 344556788899999999999999765432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcch
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHK 619 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~ 619 (732)
... .. ......++.++++++.....+|.+||+|+|+|+||++++.++....+++++|+.+|+.++.........
T Consensus 174 ~~~-----~~-~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~pri~a~V~~~~~~~~~~~~~~~~~ 247 (360)
T d2jbwa1 174 EYK-----RI-AGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETPL 247 (360)
T ss_dssp TTC-----CS-CSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEESCCSCSTTGGGSCHH
T ss_pred ccc-----cc-cccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCCCcceEEEEcccccHHHHhhhhhh
Confidence 110 11 111234567789999999889999999999999999999999843469999999998876543322211
Q ss_pred hhhhhhhhhcC--C-----hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 620 FESRYIDNLVG--S-----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 620 ~~~~~~~~~~~--~-----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
....+ ....+ . .......+....+.+|++|+|++||++|. +|++++.++++.+... .++++++++++|.
T Consensus 248 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~~--~~~l~~~~~g~H~ 323 (360)
T d2jbwa1 248 TKESW-KYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE--HLNLVVEKDGDHC 323 (360)
T ss_dssp HHHHH-HHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG--GEEEEEETTCCGG
T ss_pred hhHHH-HHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cCHHHHHHHHHhcCCC--CeEEEEECCCCcC
Confidence 11111 11111 1 12223445556678899999999999998 6999999999887543 5688999999996
Q ss_pred CCCcccHHHHHHHHHHHHHHHhCC
Q 004735 693 FRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 693 ~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
.. .+..+....+.+||.++|..
T Consensus 324 ~~--~~~~~~~~~i~dWl~~~L~~ 345 (360)
T d2jbwa1 324 CH--NLGIRPRLEMADWLYDVLVA 345 (360)
T ss_dssp GG--GGTTHHHHHHHHHHHHHHTS
T ss_pred CC--cChHHHHHHHHHHHHHHhcc
Confidence 43 23456777899999999963
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=5.1e-24 Score=220.00 Aligned_cols=239 Identities=18% Similarity=0.193 Sum_probs=171.8
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+.+.++|++. +|.+++++++.|++ ..++.|+||++||++...... .....++++||.|+++|+||.+.++
T Consensus 54 ~~~~v~~~s~-dG~~l~~~l~~P~~------~~~~~P~Vv~~hG~~~~~~~~---~~~~~~a~~G~~v~~~D~rG~G~s~ 123 (322)
T d1vlqa_ 54 EAYDVTFSGY-RGQRIKGWLLVPKL------EEEKLPCVVQYIGYNGGRGFP---HDWLFWPSMGYICFVMDTRGQGSGW 123 (322)
T ss_dssp EEEEEEEECG-GGCEEEEEEEEECC------SCSSEEEEEECCCTTCCCCCG---GGGCHHHHTTCEEEEECCTTCCCSS
T ss_pred EEEEEEEECC-CCcEEEEEEEeccC------CCCCccEEEEecCCCCCcCcH---HHHHHHHhCCCEEEEeeccccCCCC
Confidence 4577899988 99999999999986 246789999999985543222 2345789999999999999987654
Q ss_pred hhhHHhhccC---------------------CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcc
Q 004735 540 REFRERLLGR---------------------WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTF 598 (732)
Q Consensus 540 ~~~~~~~~~~---------------------~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~ 598 (732)
.......... +....+.|+.++++++..++.+|.+|++++|+|+||++++.++....++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~~~ 203 (322)
T d1vlqa_ 124 LKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKA 203 (322)
T ss_dssp SCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCSSC
T ss_pred CCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCCCc
Confidence 4321110000 0011267899999999999999999999999999999999888855678
Q ss_pred eEEEeecCcCC-HHHHHhhcchhh----hhhhhhhcCC----hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHH
Q 004735 599 KAGASLYGVAD-LSMLRAETHKFE----SRYIDNLVGS----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARK 669 (732)
Q Consensus 599 ~a~v~~~~~~d-~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~ 669 (732)
+++++.++... +........... ..+....... .+.+...+|+.++.++++|+|++||++|.++|++++.+
T Consensus 204 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~~G~~D~~vp~~~~~~ 283 (322)
T d1vlqa_ 204 KALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFA 283 (322)
T ss_dssp CEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred cEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCCEEEEEeCCCCCcCHHHHHH
Confidence 99998887654 333322111110 1111111111 13445568899999999999999999999999999887
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 670 IYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+++++ +.++++++||+++|.... ....+..++||+++|+
T Consensus 284 ~~~~~---~~~~~l~~~p~~~H~~~~----~~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 284 AYNYY---AGPKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFE 322 (322)
T ss_dssp HHHHC---CSSEEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC
T ss_pred HHHHC---CCCeEEEEECCCCCCCcc----ccCHHHHHHHHHHHhC
Confidence 77655 558899999999997532 2333456799999874
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.3e-22 Score=215.86 Aligned_cols=324 Identities=12% Similarity=0.038 Sum_probs=206.9
Q ss_pred CCcCCHHHHhccCCc--cCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE
Q 004735 76 KSPLTADVVSGASKR--LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF 153 (732)
Q Consensus 76 ~~~~~~~~i~~~~~~--~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~ 153 (732)
+.++|+|+++...-. .-.+.|.+++.+++.+ ++|. ++.++..++ +.+.++... .+..+....|.++
T Consensus 2 ~~~~tle~~~~~~~~~~~~~~~W~~~~~~~~~~----~~g~--i~~~~~~~~-~~~~l~~~~-----~~~~~~~~~~~~S 69 (465)
T d1xfda1 2 KKKVTVEDLFSEDFKIHDPEAKWISDTEFIYRE----QKGT--VRLWNVETN-TSTVLIEGK-----KIESLRAIRYEIS 69 (465)
T ss_dssp CCCCCHHHHTCTTTCCCCCCCCBSSSSCBCCCC----SSSC--EEEBCGGGC-CCEEEECTT-----TTTTTTCSEEEEC
T ss_pred CCceeHHHHhCCccccCCCCCEEeCCCcEEEEe----CCCc--EEEEECCCC-CEEEEEcCc-----cccccccceeEEC
Confidence 356999999987222 2367899733333322 2343 566666654 444444322 1223445566666
Q ss_pred CC--EEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 154 GD--TVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 154 ~~--~i~f~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
+| .|+|.... .+.+|++|+.+ +..++|+..... ......+.|||||++|+|++. ++|
T Consensus 70 pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~--~~~~~l~~~~~~-~~~l~~~~wSPDG~~iafv~~----------~nl 136 (465)
T d1xfda1 70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPEVS-NAKLQYAGWGPKGQQLIFIFE----------NNI 136 (465)
T ss_dssp TTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCCEECCCTTCC-SCCCSBCCBCSSTTCEEEEET----------TEE
T ss_pred CCCCeEEEEEcccceeEeeccccEEEEEccC--CceeeccCccCC-ccccceeeeccCCceEEEEec----------ceE
Confidence 54 77776532 35899999998 888888764321 223445789999999999986 689
Q ss_pred EEEEcCCCCccccEEcccCCC-------------------ceeccccCCCCCeEEEEeccCCC-----------------
Q 004735 224 VAIALNGQNIQEPKVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPN----------------- 267 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~-------------------~~~~p~~SPDG~~la~~~~~~~~----------------- 267 (732)
|+++..++. ..++|.+.. ......|||||++|||.+.++..
T Consensus 137 ~~~~~~~~~---~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~ 213 (465)
T d1xfda1 137 YYCAHVGKQ---AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV 213 (465)
T ss_dssp EEESSSSSC---CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred EEEecCCCc---eEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccccee
Confidence 999999887 777774321 01234599999999999865542
Q ss_pred ---------CCCCccEEEEEEecCCCceeeeEEecCCC-CCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCe
Q 004735 268 ---------MPWDKAELWVGYISENGDVYKRVCVAGFD-PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 268 ---------~~~~~~~l~v~d~~~~g~~~~~~~~~~~~-~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
.+....+|+++|++ ++.... ...+... .....++..+.|++|++ +++..++.+....|+.+|+.+|+
T Consensus 214 ~~~~Yp~~G~~np~~~l~v~d~~-~~~~~~-~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~ 291 (465)
T d1xfda1 214 KPYHYPKAGSENPSISLHVIGLN-GPTHDL-EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (465)
T ss_dssp EEEECCBTTSCCCEEEEEEEESS-SSCCCE-ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred eeeeccccCCCCCceeEEEEecC-CCcEEE-EEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence 11123478999997 554321 2121111 01114566789999999 56666765667789999999999
Q ss_pred EEEecccccccCCCceeecc-cceeeeeecCCCCEEEE--EEEECCEEEEEEEE-------CCCCceEEeccCCCceEEe
Q 004735 337 VLAIYSLDAEFSRPLWVFGI-NSYEIIQSHGEKNLIAC--SYRQNGRSYLGILD-------DFGHSLSLLDIPFTDIDNI 406 (732)
Q Consensus 337 ~~~l~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~l~~--~s~~~g~~~ly~~~-------~~~~~~~~lt~~~~~v~~~ 406 (732)
.+.+..+. ...|.... ....|++ +++.++| .++++|+.|+|.+. ..++..++||.+.|.|..+
T Consensus 292 ~~~~~~e~----~~~wv~~~~~~p~~~~---dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i 364 (465)
T d1xfda1 292 CTKKHEDE----SEAWLHRQNEEPVFSK---DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI 364 (465)
T ss_dssp EEEEEEEE----CSSCCCCCCCCCEECT---TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred EEEEEEEc----CCceEeccCCceeEcc---CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEE
Confidence 88887542 23444221 2234443 6766544 46677888888774 3455678999999999887
Q ss_pred --eEeCCEEEEEEeCCCCCc--EEEEEEcCCCcc
Q 004735 407 --TLGNDCLFVEGASGVEPS--SVAKVTLDDHKL 436 (732)
Q Consensus 407 --~~~~~~~~~~~~~~~~~~--~ly~~dl~~~~~ 436 (732)
.+++++.+|+.++...|. +||+++++++..
T Consensus 365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~ 398 (465)
T d1xfda1 365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN 398 (465)
T ss_dssp EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc
Confidence 345555556666666554 499999998754
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.87 E-value=1.9e-21 Score=185.50 Aligned_cols=207 Identities=16% Similarity=0.114 Sum_probs=152.5
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCC---CccCCcccHHHHHHHHCCCEEEEEcCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT---SEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~---~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
+.+.+++.++ +| ++.+.+..|.... ..+.+++|++|+.|. .........+++.|+++||.|+.+||||.+
T Consensus 7 ~~~~l~i~gp-~G-~l~~~~~~p~~~~-----~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G 79 (218)
T d2fuka1 7 ESAALTLDGP-VG-PLDVAVDLPEPDV-----AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVG 79 (218)
T ss_dssp SCEEEEEEET-TE-EEEEEEECCCTTS-----CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTST
T ss_pred CceEEEEeCC-Cc-cEEEEEEcCCCCC-----CCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCc
Confidence 4567899987 66 7998999886522 345577888996433 222222445788899999999999999876
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhh
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAE 616 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~ 616 (732)
.+...+. ......+|+.++++++.++. +.++++++|+||||.+++.++... .++++|+++|......
T Consensus 80 ~S~g~~~------~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~-~~~~lil~ap~~~~~~---- 146 (218)
T d2fuka1 80 TSAGSFD------HGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL-EPQVLISIAPPAGRWD---- 146 (218)
T ss_dssp TCCSCCC------TTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH-CCSEEEEESCCBTTBC----
T ss_pred cCCCccC------cCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc-ccceEEEeCCcccchh----
Confidence 6433221 12345889999999999874 457999999999999999888733 2578888887643110
Q ss_pred cchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc
Q 004735 617 THKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 696 (732)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 696 (732)
. ...++.+|+|++||++|.++|++++.++++.+. .+.++++++|++|.|..
T Consensus 147 ---------------------~----~~~~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~~---~~~~l~~i~ga~H~f~~- 197 (218)
T d2fuka1 147 ---------------------F----SDVQPPAQWLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMPDTSHFFHR- 197 (218)
T ss_dssp ---------------------C----TTCCCCSSEEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEETTCCTTCTT-
T ss_pred ---------------------h----hccccccceeeEecCCCcCcCHHHHHHHHHHcc---CCceEEEeCCCCCCCCC-
Confidence 0 012456899999999999999999888876544 35689999999998764
Q ss_pred ccHHHHHHHHHHHHHHHhCC
Q 004735 697 ENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 697 ~~~~~~~~~~~~fl~~~l~~ 716 (732)
...+..+.+.+|++++|..
T Consensus 198 -~~~~l~~~~~~~v~~~l~~ 216 (218)
T d2fuka1 198 -KLIDLRGALQHGVRRWLPA 216 (218)
T ss_dssp -CHHHHHHHHHHHHGGGCSS
T ss_pred -CHHHHHHHHHHHHHHhcCC
Confidence 3356788899999999863
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.87 E-value=2.5e-21 Score=197.00 Aligned_cols=233 Identities=13% Similarity=0.175 Sum_probs=158.6
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
....++.. ||..+++|.+.|++.. .++.|+||++||.. .....+..++++|+++||+|+++|+||++|....
T Consensus 5 ~~h~~~~~-dg~~l~~w~~~p~~~~-----~~~~~~Vvi~HG~~--~~~~~~~~~a~~L~~~G~~Vi~~D~rGh~G~S~g 76 (302)
T d1thta_ 5 IAHVLRVN-NGQELHVWETPPKENV-----PFKNNTILIASGFA--RRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSG 76 (302)
T ss_dssp EEEEEEET-TTEEEEEEEECCCTTS-----CCCSCEEEEECTTC--GGGGGGHHHHHHHHTTTCCEEEECCCBCC-----
T ss_pred eeeEEEcC-CCCEEEEEEecCcCCC-----CCCCCEEEEeCCCc--chHHHHHHHHHHHHHCCCEEEEecCCCCCCCCCC
Confidence 34556776 9999999999997632 45679999999974 3345677899999999999999999986443221
Q ss_pred hHHhhccCCC-cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchh
Q 004735 542 FRERLLGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKF 620 (732)
Q Consensus 542 ~~~~~~~~~~-~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 620 (732)
. ...+. ....+|+.++++++.++ +.++++|+||||||.+++.++.. ..++++|+.+|+.++.........+
T Consensus 77 --~--~~~~~~~~~~~dl~~vi~~l~~~---~~~~i~lvG~SmGG~ial~~A~~-~~v~~li~~~g~~~~~~~~~~~~~~ 148 (302)
T d1thta_ 77 --S--IDEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-LELSFLITAVGVVNLRDTLEKALGF 148 (302)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-SCCSEEEEESCCSCHHHHHHHHHSS
T ss_pred --c--ccCCCHHHHHHHHHHHHHhhhcc---CCceeEEEEEchHHHHHHHHhcc-cccceeEeecccccHHHHHHHHHhh
Confidence 1 11111 12478899999999876 35689999999999999877763 3489999999998877543321111
Q ss_pred hhh-h-hhhhcC----C-----hhhhh------h----cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCC
Q 004735 621 ESR-Y-IDNLVG----S-----EKDYY------E----KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGL 679 (732)
Q Consensus 621 ~~~-~-~~~~~~----~-----~~~~~------~----~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~ 679 (732)
... . ...... . ...+. . .++...+.++++|+|+++|++|.+|++++++++++.++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~~~~~~~l~~~i~s~-- 226 (302)
T d1thta_ 149 DYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTG-- 226 (302)
T ss_dssp CGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTTC--
T ss_pred ccchhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhCCCC--
Confidence 000 0 000000 0 00000 0 1234567889999999999999999999999999887643
Q ss_pred CEEEEEeCCCCccCCCcc-cHHHHHHHHHHHHHH
Q 004735 680 PVALVEYEGEQHGFRKAE-NIKFTLEQQMVFFAR 712 (732)
Q Consensus 680 ~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~fl~~ 712 (732)
+.++++++|++|.+.... .....++.+..+...
T Consensus 227 ~~kl~~~~g~~H~l~e~~~~~~~~~~~~~~~~~~ 260 (302)
T d1thta_ 227 HCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIA 260 (302)
T ss_dssp CEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEecCCCcccccChHHHHHHHHHHHHHHhh
Confidence 679999999999876432 223344555555443
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.86 E-value=4e-21 Score=190.90 Aligned_cols=191 Identities=18% Similarity=0.199 Sum_probs=147.5
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCccc
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD 554 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~ 554 (732)
..+.+|.|.+.. +++.|+||++||+.+. ...+..+++.|+++||.|+++|++|...... ..
T Consensus 37 ~~~~ly~P~~~~-----~g~~P~Vv~~HG~~g~--~~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~~------------~~ 97 (260)
T d1jfra_ 37 GGGTIYYPTSTA-----DGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SR 97 (260)
T ss_dssp CCEEEEEESCCT-----TCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCHH------------HH
T ss_pred cCEEEEEcCCCC-----CCCccEEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeeCCCcCCch------------hh
Confidence 346778887622 4568999999997443 3445668899999999999999987544321 11
Q ss_pred HHHHHHHHHHHHhc----CCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcC
Q 004735 555 VNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG 630 (732)
Q Consensus 555 ~~D~~~~i~~l~~~----~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 630 (732)
..|+.++++++.+. +.+|.+||+++|||+||.+++.++....+++++++++|...
T Consensus 98 ~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~~~~A~v~~~~~~~--------------------- 156 (260)
T d1jfra_ 98 GRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTSLKAAIPLTGWNT--------------------- 156 (260)
T ss_dssp HHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTTCSEEEEESCCCS---------------------
T ss_pred HHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhccchhheeeecccc---------------------
Confidence 46788888888874 56899999999999999999999985567999999888632
Q ss_pred ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 631 SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 631 ~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
.....++++|+|+++|++|.++|+.+..+.+......+.+.++++++|++|++....+ ....+.+++||
T Consensus 157 ----------~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~ga~H~~~~~~~-~~~~~~~~~wl 225 (260)
T d1jfra_ 157 ----------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSD-TTIAKYSISWL 225 (260)
T ss_dssp ----------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEETTCCTTGGGSCC-HHHHHHHHHHH
T ss_pred ----------cccccccccceeEEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEECCCccCCCCCCh-HHHHHHHHHHH
Confidence 1234567899999999999999987655544445456778899999999998755443 55677889999
Q ss_pred HHHhCC
Q 004735 711 ARVVGH 716 (732)
Q Consensus 711 ~~~l~~ 716 (732)
+.+|++
T Consensus 226 ~~~L~~ 231 (260)
T d1jfra_ 226 KRFIDS 231 (260)
T ss_dssp HHHHSC
T ss_pred HHHhcC
Confidence 999984
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.85 E-value=8e-21 Score=185.59 Aligned_cols=209 Identities=18% Similarity=0.246 Sum_probs=150.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
|.|+|++. ||..+++++..|.+ ++.|+||++|++.+. .......++.|+++||.|++||+.+.++.+..
T Consensus 4 e~v~~~~~-dg~~~~a~~~~P~~--------~~~P~vl~~h~~~G~--~~~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~ 72 (233)
T d1dina_ 4 EGISIQSY-DGHTFGALVGSPAK--------APAPVIVIAQEIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTA 72 (233)
T ss_dssp TTCCEECT-TSCEECEEEECCSS--------SSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCB
T ss_pred eEEEEEcC-CCCEEEEEEECCCC--------CCceEEEEeCCCCCC--CHHHHHHHHHHHhcCCcceeeeeccCCCcCcc
Confidence 55788988 99999999999964 578999999976322 22344568889999999999997654433221
Q ss_pred h-----H--Hh---hccCC-CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCH
Q 004735 542 F-----R--ER---LLGRW-GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADL 610 (732)
Q Consensus 542 ~-----~--~~---~~~~~-~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~ 610 (732)
. . .. ..... ......|+.++++++.+.+. +.+||+++|+|+||.+++.++..+. +.++++.+|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~~~-~~~~~~~~~~~~- 149 (233)
T d1dina_ 73 LDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAKGY-VDRAVGYYGVGL- 149 (233)
T ss_dssp CCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHHTC-SSEEEEESCSCG-
T ss_pred cChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccccc-cceecccccccc-
Confidence 1 0 00 00000 11236788899999987764 5689999999999999998887654 556666655321
Q ss_pred HHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004735 611 SMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690 (732)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~g 690 (732)
.+++..+.++++|+|++||++|+++|.++.+.+.+.++ .+.++++++|+|++
T Consensus 150 ---------------------------~~~~~~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~-~~~~~~~~~y~ga~ 201 (233)
T d1dina_ 150 ---------------------------EKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFG-ANPLLQVHWYEEAG 201 (233)
T ss_dssp ---------------------------GGGGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHT-TCTTEEEEEETTCC
T ss_pred ---------------------------ccchhhhhccCCcceeeecccccCCCHHHHHHHHHHHh-cCCCEEEEEECCCC
Confidence 01223345678999999999999999998888877665 57799999999999
Q ss_pred ccCCCc-------ccHHHHHHHHHHHHHH
Q 004735 691 HGFRKA-------ENIKFTLEQQMVFFAR 712 (732)
Q Consensus 691 H~~~~~-------~~~~~~~~~~~~fl~~ 712 (732)
|+|..+ +..++.++++++||..
T Consensus 202 HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 202 HSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp TTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 998532 2234567888888864
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.84 E-value=4.5e-20 Score=189.47 Aligned_cols=236 Identities=17% Similarity=0.124 Sum_probs=153.6
Q ss_pred CcEEEEeeccCCCe-EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-cccHHHHHHH-HCCCEEEEEcCCCCC
Q 004735 460 LPELIEFPTEVPGQ-KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWT-SRGWAFVDVNYGGST 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~-~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~~~~~~~~l~-~~G~~v~~~d~rG~~ 536 (732)
+.+.+++++. +|. .+.+++|.|++ ..++.|+||++|||++..... ........++ +.||+|+.+|||..+
T Consensus 49 ~~~~~~~~~~-~g~~~i~~~~~~P~~------~~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~p 121 (317)
T d1lzla_ 49 SLRELSAPGL-DGDPEVKIRFVTPDN------TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAP 121 (317)
T ss_dssp EEEEEEECCS-TTCCCEEEEEEEESS------CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred eEEEEEEecC-CCCceEEEEEECCCC------CCCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccccc
Confidence 4577888887 775 69999999986 245789999999997654333 2334444554 569999999999876
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEEEeecCcC
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F----RDTFKAGASLYGVA 608 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~----p~~~~a~v~~~~~~ 608 (732)
+.... ..++|+.+++.|+.++ ..+|++||+|+|+|+||++++.++. . .......++..+..
T Consensus 122 e~~~~-----------~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (317)
T d1lzla_ 122 ETTFP-----------GPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPEL 190 (317)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCC
T ss_pred ccccc-----------ccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccccc
Confidence 53321 2367888888888654 5689999999999999999988875 1 11123333333322
Q ss_pred CHH----HHHhhcch----------hhhhhhhhhcC---ChhhhhhcCccccCC-CCCCCEEEEEeCCCCccChHHHHHH
Q 004735 609 DLS----MLRAETHK----------FESRYIDNLVG---SEKDYYEKSPINFVD-KFSCPIILFQGLEDKVVPPDQARKI 670 (732)
Q Consensus 609 d~~----~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~sp~~~~~-~i~~P~Lii~G~~D~~v~~~~~~~~ 670 (732)
+.. .+...... ....+...... ++......+|..... ...+|+|+++|++|. ...+++.|
T Consensus 191 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~--l~~~~~~~ 268 (317)
T d1lzla_ 191 DDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDP--LRDEGIEY 268 (317)
T ss_dssp CTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCT--THHHHHHH
T ss_pred cccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCC--CHHHHHHH
Confidence 111 11000000 00000100000 111111222322222 224799999999995 46789999
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCC---cccHHHHHHHHHHHHHHHhC
Q 004735 671 YKALKENGLPVALVEYEGEQHGFRK---AENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~gH~~~~---~~~~~~~~~~~~~fl~~~l~ 715 (732)
+++|++.|+++++++|++++|+|.. .....+..+++++||+++|+
T Consensus 269 ~~~L~~~G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 269 ALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp HHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998742 23345667889999999987
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.83 E-value=1.3e-20 Score=196.15 Aligned_cols=249 Identities=18% Similarity=0.154 Sum_probs=178.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC--ccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS--EARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~--~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+.+.++.+ ||.+|.+.+|.|+. .++.|+||+.||.+.. .....+....+.|+++||+|+++|.||.++++
T Consensus 6 ~~v~ipmr-DGv~L~~~vy~P~~-------~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~ 77 (347)
T d1ju3a2 6 SNVMVPMR-DGVRLAVDLYRPDA-------DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASE 77 (347)
T ss_dssp EEEEEECT-TSCEEEEEEEEECC-------SSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCC
T ss_pred eCeEEECC-CCCEEEEEEEEcCC-------CCCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccC
Confidence 56889998 99999999999976 5689999999985321 11122333567899999999999999988876
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH--H-h
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML--R-A 615 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~--~-~ 615 (732)
..+. ....+..|..++++|+.+++.+| .||+++|+|+||++++++++ .|+.+++++..++..|+... . .
T Consensus 78 G~~~------~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~ 150 (347)
T d1ju3a2 78 GEFV------PHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGP 150 (347)
T ss_dssp SCCC------TTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCT
T ss_pred Cccc------cccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhc
Confidence 5442 22244678999999999998877 79999999999999999988 88889999999988764210 0 0
Q ss_pred -------hc----c-------------------------hhh----------------------hhhhhhhcC---Chhh
Q 004735 616 -------ET----H-------------------------KFE----------------------SRYIDNLVG---SEKD 634 (732)
Q Consensus 616 -------~~----~-------------------------~~~----------------------~~~~~~~~~---~~~~ 634 (732)
.. . ... ..+...+.. ..+.
T Consensus 151 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (347)
T d1ju3a2 151 GGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDES 230 (347)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHH
T ss_pred CCccchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhh
Confidence 00 0 000 000000010 1245
Q ss_pred hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC------------CCcccHHHH
Q 004735 635 YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF------------RKAENIKFT 702 (732)
Q Consensus 635 ~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~------------~~~~~~~~~ 702 (732)
|...++...+.++++|+|+++|..|..+ ..+.+++++++. +.+.++++-|. +|.. .......+.
T Consensus 231 w~~~~~~~~~~~i~vP~L~i~G~~D~~~--~~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~~~~~~~~~ 306 (347)
T d1ju3a2 231 WQSISLFERLGGLATPALITAGWYDGFV--GESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEA 306 (347)
T ss_dssp HHTTCCHHHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGGGSCCHHHH
T ss_pred hhcCCHHHHhhcCCCCEEEeccccCCCc--chhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCccccccHHHH
Confidence 6667888889999999999999999764 456778888864 45678887765 4532 112235677
Q ss_pred HHHHHHHHHHHhCCCCCC-CCCCccccc
Q 004735 703 LEQQMVFFARVVGHFDVA-DEIIPIKID 729 (732)
Q Consensus 703 ~~~~~~fl~~~l~~~~~~-~~~~~~~~~ 729 (732)
...+++||+++|++..+. ...|+|++.
T Consensus 307 ~~~~l~wfD~~LKg~~~~~~~~p~v~~~ 334 (347)
T d1ju3a2 307 TTMHKAFFDRHLRGETDALAGVPKVRLF 334 (347)
T ss_dssp HHHHHHHHHHHTSCCTTTTTTCCSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCceEEE
Confidence 788899999999976543 567778764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=3.4e-19 Score=178.07 Aligned_cols=244 Identities=14% Similarity=0.137 Sum_probs=180.6
Q ss_pred CEEEEEeCCCC-----eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 155 DTVIFSNYKDQ-----RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 155 ~~i~f~~~~~~-----~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
.+|+|+...++ +||++|.++ +.+++|+.. ......|+|||||++|+|++.... ...+|+++..
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG--~~~~~l~~~----~~~~~sP~wSPDGk~IAf~~~~~~------~~~~~~~~~~ 71 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESG------RSALVIQTLA 71 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS--CSCEEEEEE----SSCEEEEEECTTSSEEEEEECTTS------SCEEEEEETT
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCC--CCcEEEecC----CCceeeeEECCCCCEEEEEEeecc------Ccceeeeecc
Confidence 36777765543 799999997 889999876 334467999999999999987543 3589999999
Q ss_pred CCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 230 ~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
++. .++++...+....+.|||||++|++..... + ...+...... .... ....... .....+.|+
T Consensus 72 ~~~---~~~~~~~~~~~~~~~~spdg~~i~~~~~~~-~----~~~~~~~~~~-~~~~---~~~~~~~----~~~~~~~~~ 135 (269)
T d2hqsa1 72 NGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-G----SLNLYVMDLA-SGQI---RQVTDGR----SNNTEPTWF 135 (269)
T ss_dssp TCC---EEEEECCSSCEEEEEECTTSSEEEEEECTT-S----SCEEEEEETT-TCCE---EECCCCS----SCEEEEEEC
T ss_pred cCc---eeEEeeeecccccceecCCCCeeeEeeecC-C----ccceeecccc-cccc---eeeeecc----ccccccccc
Confidence 988 888887777778899999999999987443 2 3334444433 2222 2222222 344577899
Q ss_pred CCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 310 pDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
++++ +++.+.+ .|..+|++.+++++...+++........+.|++ +++.+++.+.+.+...|++++.
T Consensus 136 ~~~~~~~~~~~~-~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sp------------dg~~~~~~~~~~~~~~i~~~~~ 202 (269)
T d2hqsa1 136 PDSQNLAFTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQDL 202 (269)
T ss_dssp TTSSEEEEEECT-TSSCEEEEEETTSSCCEECCCSSSEEEEEEECT------------TSSEEEEEEECSSCEEEEEEET
T ss_pred cccccceecccc-cCCceEeeeecccccceeeeccccccccccccc------------ccceeEEEeecCCceeeeEeec
Confidence 9998 7878777 788899999999998888876655556677776 8899999999999999999999
Q ss_pred CCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 389 FGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 389 ~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
+++..+.+.......... +.+++.++|. +......+||+++++++..++|+
T Consensus 203 ~~~~~~~~~~~~~~~~p~~SPDG~~i~f~-s~~~~~~~l~~~~~dg~~~~~lt 254 (269)
T d2hqsa1 203 ATGGVQVLSSTFLDETPSLAPNGTMVIYS-SSQGMGSVLNLVSTDGRFKARLP 254 (269)
T ss_dssp TTCCEEECCCSSSCEEEEECTTSSEEEEE-EEETTEEEEEEEETTSCCEEECC
T ss_pred ccccceEeecCccccceEECCCCCEEEEE-EcCCCCcEEEEEECCCCCEEEEe
Confidence 988776665544444433 4555555554 45566778999999999877766
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.83 E-value=9.4e-19 Score=190.13 Aligned_cols=326 Identities=10% Similarity=0.072 Sum_probs=201.6
Q ss_pred CcCCHHHHhccCCc--cCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE-
Q 004735 77 SPLTADVVSGASKR--LGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF- 153 (732)
Q Consensus 77 ~~~~~~~i~~~~~~--~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~- 153 (732)
.++|+|+++...-. .-.++|.+++.+++.+ ++. ++.++..+| +.+.++... ... -+..++.++.++
T Consensus 3 ~~~t~~~~~~~~~~~~~~~~~W~~d~~~~~~~-----~~~--~~~~~~~t~-~~~~~~~~~-~~~--~~~~~i~~~~~Sp 71 (470)
T d2bgra1 3 KTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQ-----ENN--ILVFNAEYG-NSSVFLENS-TFD--EFGHSINDYSISP 71 (470)
T ss_dssp EECCHHHHHHTCSCCCCCCCEECSSSEEEEES-----SSC--EEEEETTTC-CEEEEECTT-TTT--TSSSCCCEEEECT
T ss_pred CcEEhHHhhCCceeccccCCEeCCCCEEEEEc-----CCc--EEEEECCCC-CEEEEEchh-hhh--hccCccceeEECC
Confidence 46899999887433 3588999844444422 243 455555554 444444321 111 112234455554
Q ss_pred -CCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 154 -GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 154 -~~~i~f~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+..|+|.... .+.+|++|+++ ++.++++..+ .....+.|||||++|+|+++ .+||
T Consensus 72 Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~--~~~~~l~~~~----~~~~~~~~SPDG~~ia~~~~----------~~l~ 135 (470)
T d2bgra1 72 DGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLITEERIP----NNTQWVTWSPVGHKLAYVWN----------NDIY 135 (470)
T ss_dssp TSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC----TTEEEEEECSSTTCEEEEET----------TEEE
T ss_pred CCCEEEEEECCcceeeeccCceEEEEECCC--CcccccccCC----ccccccccccCcceeeEeec----------ccce
Confidence 4578887531 24799999998 8888888763 33467889999999999865 6899
Q ss_pred EEEcCCCCccccEEcccCCC-------------------ceeccccCCCCCeEEEEeccCCC------------------
Q 004735 225 AIALNGQNIQEPKVLVSGSD-------------------FYAFPRMDPRGERMAWIEWHHPN------------------ 267 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~-------------------~~~~p~~SPDG~~la~~~~~~~~------------------ 267 (732)
+++..+++ ..+++.... ......|||||++|+|.+.+...
T Consensus 136 ~~~~~~g~---~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~ 212 (470)
T d2bgra1 136 VKIEPNLP---SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK 212 (470)
T ss_dssp EESSTTSC---CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred EEECCCCc---eeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCe
Confidence 99999988 777764321 12235699999999999865442
Q ss_pred ----------CCCCccEEEEEEecCCCceeeeE--E-------ecCCCCCccccCcCceeCCCCc-EEEEEeccCCee--
Q 004735 268 ----------MPWDKAELWVGYISENGDVYKRV--C-------VAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW-- 325 (732)
Q Consensus 268 ----------~~~~~~~l~v~d~~~~g~~~~~~--~-------~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~-- 325 (732)
.+.....++++++. ++...... . ....+ .++..+.|+++++ +++..++.++..
T Consensus 213 ~~~~~~~~~g~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~w~~~~~~~~~~~~r~~~~~~~ 287 (470)
T d2bgra1 213 TVRVPYPKAGAVNPTVKFFVVNTD-SLSSVTNATSIQITAPASMLIGD----HYLCDVTWATQERISLQWLRRIQNYSVM 287 (470)
T ss_dssp EEEEECCBTTSCCCEEEEEEEEGG-GCCSSSCCCEEEECCCHHHHTSC----EEEEEEEEEETTEEEEEEEESSTTEEEE
T ss_pred eeeeccccccccCCcceEEEEECC-CcceeeeccccccCCccccCCCC----ceEEEEEEcCCCceeEEEeeccCCceEE
Confidence 11122356777776 44321110 0 01112 4556788999999 555555534433
Q ss_pred eEEEEeccCCeEEEeccc-ccccCCCceeecc--cceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCc
Q 004735 326 NLHKWIESNNEVLAIYSL-DAEFSRPLWVFGI--NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD 402 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~--~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~ 402 (732)
.++.+|..++..+.+... ........|.... ....+.. ..++.+++.++++|..|||+++.+++..++||.+.+.
T Consensus 288 ~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~ 365 (470)
T d2bgra1 288 DICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL--DGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWE 365 (470)
T ss_dssp EEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT--TSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSC
T ss_pred EEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeee--cCCCcEEEEeccCcCceeEEEeccCCceeeeccCCee
Confidence 466777788887776521 1111223333211 1112221 1445678889999999999999999999999999999
Q ss_pred eEEe-eEeCCEEEEEEeCCC-CCc--EEEEEEcCCCc-ceee
Q 004735 403 IDNI-TLGNDCLFVEGASGV-EPS--SVAKVTLDDHK-LKAV 439 (732)
Q Consensus 403 v~~~-~~~~~~~~~~~~~~~-~~~--~ly~~dl~~~~-~~~l 439 (732)
+..+ ..+++.++|.++... .|. +||++++.++. .+.|
T Consensus 366 v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~l 407 (470)
T d2bgra1 366 VIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCL 407 (470)
T ss_dssp EEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEES
T ss_pred EEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEe
Confidence 8887 456666666554432 333 59999998754 4433
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.83 E-value=8.2e-20 Score=191.72 Aligned_cols=260 Identities=17% Similarity=0.157 Sum_probs=176.2
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC----cc-CC----cccHHHHHHHHCCCEEEEEc
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS----EA-RG----ILNLSIQYWTSRGWAFVDVN 531 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~----~~-~~----~~~~~~~~l~~~G~~v~~~d 531 (732)
.+.+.++.+ ||.+|.+.+|.|++ .++.|+||+.|+.... .. .. .+....+.|+++||+|+.+|
T Consensus 24 ~~~v~i~~r-DG~~L~~~v~~P~~-------~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d 95 (381)
T d1mpxa2 24 KREVMIPMR-DGVKLHTVIVLPKG-------AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 95 (381)
T ss_dssp EEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred EEEEEEECC-CCCEEEEEEEEeCC-------CCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEe
Confidence 367899998 99999999999986 5689999999974211 00 01 11235688999999999999
Q ss_pred CCCCCCCChhhHHh-----hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeec
Q 004735 532 YGGSTGYGREFRER-----LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY 605 (732)
Q Consensus 532 ~rG~~g~g~~~~~~-----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~ 605 (732)
.||.++++..+... .....+..+++|..++++|+.++..++.+||+++|+|+||++++++++ .|+.++++|+.+
T Consensus 96 ~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~ 175 (381)
T d1mpxa2 96 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPES 175 (381)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred cCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeec
Confidence 99987765544321 122234457899999999999998788899999999999999998888 888999999999
Q ss_pred CcCCHHHHHhhcc-----h-h------------------------hhhhh--------------------hhhc---CCh
Q 004735 606 GVADLSMLRAETH-----K-F------------------------ESRYI--------------------DNLV---GSE 632 (732)
Q Consensus 606 ~~~d~~~~~~~~~-----~-~------------------------~~~~~--------------------~~~~---~~~ 632 (732)
|+.|......... . + ...++ .... ...
T Consensus 176 ~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 255 (381)
T d1mpxa2 176 PMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYD 255 (381)
T ss_dssp CCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSC
T ss_pred cccccccccccccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCcc
Confidence 9887532100000 0 0 00000 0000 011
Q ss_pred hhhhhcCccc--cCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHh---CCCCEEEEEeCCCCccC-------------C
Q 004735 633 KDYYEKSPIN--FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE---NGLPVALVEYEGEQHGF-------------R 694 (732)
Q Consensus 633 ~~~~~~sp~~--~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~---~g~~~~~~~~~~~gH~~-------------~ 694 (732)
+.|...++.. ...+|++|+|+++|..|...... +...++.++. .+.+.++++-|. +|.- .
T Consensus 256 ~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~~~-~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~~~~~~~~ 333 (381)
T d1mpxa2 256 AFWQEQALDKVMARTPLKVPTMWLQGLWDQEDMWG-AIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFE 333 (381)
T ss_dssp HHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCSSH-HHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECS
T ss_pred chhhhcCchhhhhhccccCceEEEeccccCCcccc-HHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCcCCccccc
Confidence 3334444433 34678999999999999765543 4444555443 346788988886 5741 1
Q ss_pred CcccHHHHHHHHHHHHHHHhCCCCCCCCCCcccccC
Q 004735 695 KAENIKFTLEQQMVFFARVVGHFDVADEIIPIKIDN 730 (732)
Q Consensus 695 ~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~~ 730 (732)
.........+.+++||+++|++..+..+.|+|.+-.
T Consensus 334 ~~~~~~~~~~~~l~wFD~~LKg~~~~~~~ppV~~~~ 369 (381)
T d1mpxa2 334 GDTARQFRHDVLRPFFDQYLVDGAPKADTPPVFIYN 369 (381)
T ss_dssp SCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEE
T ss_pred cchhhhhHHHHHHHHHHHHhCCCCCCCCCCCEEEEE
Confidence 222233445667899999999766665678887643
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.83 E-value=7.3e-20 Score=180.95 Aligned_cols=183 Identities=16% Similarity=0.151 Sum_probs=144.7
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc-CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcc
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 553 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~-~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~ 553 (732)
-..-+|.|++ ++.|+||++|||+|... ...+...++.|+++||+|+.+|||.+++.... .
T Consensus 50 ~~lDiy~P~~--------~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~~~p-----------~ 110 (261)
T d2pbla1 50 HKFDLFLPEG--------TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRIS-----------E 110 (261)
T ss_dssp CEEEEECCSS--------SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSCHH-----------H
T ss_pred eEEEEeccCC--------CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeecccccccccccCc-----------h
Confidence 3445788864 45799999999987543 34456678899999999999999987654321 2
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C------CCcceEEEeecCcCCHHHHHhhcchhhhhhhh
Q 004735 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F------RDTFKAGASLYGVADLSMLRAETHKFESRYID 626 (732)
Q Consensus 554 ~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~------p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 626 (732)
.++|+.++++|+.++. ++||+|+|||+||+++++++. . ...++++++++|+.++..+... +..
T Consensus 111 ~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 180 (261)
T d2pbla1 111 ITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRT-------SMN 180 (261)
T ss_dssp HHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGS-------TTH
T ss_pred hHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhh-------hhc
Confidence 3789999999999874 479999999999999988775 2 2368999999999987653221 111
Q ss_pred h-hcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004735 627 N-LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691 (732)
Q Consensus 627 ~-~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH 691 (732)
. +..+++.+...||+.++.+..+|+|++||++|..++..|+++++++++. +.+++++++|
T Consensus 181 ~~~~~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~~~qs~~~~~~l~~-----~~~~~~~~~H 241 (261)
T d2pbla1 181 EKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWDA-----DHVIAFEKHH 241 (261)
T ss_dssp HHHCCCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHTC-----EEEEETTCCT
T ss_pred ccccCCHHHHHHhCchhhcccCCCeEEEEEecCCCchHHHHHHHHHHHhCC-----CceEeCCCCc
Confidence 1 2235778888999999999999999999999999999999999999853 7888999988
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.82 E-value=2.2e-19 Score=171.30 Aligned_cols=185 Identities=12% Similarity=0.092 Sum_probs=136.1
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC-----CcccHHHHHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW-----GIVDVNDCCSCATFLV 566 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~-----~~~~~~D~~~~i~~l~ 566 (732)
+++.|+||++||++. ....+...+..++ .++.|++|+.....+.+..+........ .....+++.+.++.+.
T Consensus 11 ~~~~P~vi~lHG~g~--~~~~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 87 (202)
T d2h1ia1 11 DTSKPVLLLLHGTGG--NELDLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEAA 87 (202)
T ss_dssp CTTSCEEEEECCTTC--CTTTTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCC--CHHHHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 566899999999743 3345556666665 5788998875322211111111000000 0012455777788888
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCC
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 645 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 645 (732)
++..+|.+||+++|+|+||++++.++. +|++++++++.+|..... +.....
T Consensus 88 ~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~ 139 (202)
T d2h1ia1 88 KEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR----------------------------GMQLAN 139 (202)
T ss_dssp HHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS----------------------------SCCCCC
T ss_pred HhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc----------------------------cccccc
Confidence 888899999999999999999999998 999999999999875311 112233
Q ss_pred CCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 646 ~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
....|++++||++|++||+++++++++.|++.|.+++++.|++ ||.+. .+.++.+.+||+|.
T Consensus 140 ~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~~~~~~~wl~k~ 201 (202)
T d2h1ia1 140 LAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLT-----MGEVEKAKEWYDKA 201 (202)
T ss_dssp CTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHHHHHHHHHHHHH
T ss_pred cccchhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999996 89874 45678899999875
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.82 E-value=8.8e-20 Score=186.39 Aligned_cols=229 Identities=19% Similarity=0.200 Sum_probs=158.7
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHH-HHCCCEEEEEcCCCC
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYW-TSRGWAFVDVNYGGS 535 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l-~~~G~~v~~~d~rG~ 535 (732)
..+.+.+++++. +| .+.+.+|.|+. +.|+||++|||++...... .......+ ++.|+.|+.+|||.+
T Consensus 53 ~~~~~~~~i~~~-~g-~i~~~iy~P~~---------~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrla 121 (311)
T d1jjia_ 53 VERVEDRTIKGR-NG-DIRVRVYQQKP---------DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLA 121 (311)
T ss_dssp CSEEEEEEEEET-TE-EEEEEEEESSS---------SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCT
T ss_pred cceEEEEEEeCC-CC-cEEEEEEcCCC---------CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEeccccc
Confidence 445677888875 55 79999999954 2499999999976544332 33344445 556999999999988
Q ss_pred CCCChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-----CCCcceEEEeecCc
Q 004735 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-----FRDTFKAGASLYGV 607 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-----~p~~~~a~v~~~~~ 607 (732)
+++... ..++|+.++++|+.++ ..+|++||+|+|+|+||++++.++. ......+.++++|.
T Consensus 122 p~~~~p-----------~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~ 190 (311)
T d1jjia_ 122 PEHKFP-----------AAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPV 190 (311)
T ss_dssp TTSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCC
T ss_pred cccccc-----------hhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecce
Confidence 764322 2368888999988775 5688999999999999999887753 34567888999998
Q ss_pred CCHHHHHhhcch-----------hhhhhhhhhcCCh--hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHH
Q 004735 608 ADLSMLRAETHK-----------FESRYIDNLVGSE--KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 674 (732)
Q Consensus 608 ~d~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (732)
.+.......... ....+........ ......+|+....+..+|++|++|+.|.. ..++.+++++|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l--~d~~~~~~~~L 268 (311)
T d1jjia_ 191 VNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPL--RDEGEVFGQML 268 (311)
T ss_dssp CCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTT--HHHHHHHHHHH
T ss_pred eeeccCcccccccccccccccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCC--hHHHHHHHHHH
Confidence 765321111000 0001111111111 11123467666555568999999999965 56899999999
Q ss_pred HhCCCCEEEEEeCCCCccCCC----cccHHHHHHHHHHHH
Q 004735 675 KENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFF 710 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl 710 (732)
+++|+++++++|+|++|+|.. .+..++.++.+.+||
T Consensus 269 ~~~Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl 308 (311)
T d1jjia_ 269 RRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALL 308 (311)
T ss_dssp HHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999998742 123456677777776
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.82 E-value=5.4e-19 Score=187.00 Aligned_cols=205 Identities=18% Similarity=0.173 Sum_probs=151.3
Q ss_pred HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC--------------CCCcEEEEE
Q 004735 515 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA--------------DEKRLCITG 580 (732)
Q Consensus 515 ~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~--------------d~~ri~i~G 580 (732)
...++|+++||+|+.+|.||.++++..+. .++..+.+|..++|+|+..+... ...||+++|
T Consensus 127 ~~~~~~~~~GYavv~~D~RG~g~S~G~~~-----~~~~~e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G 201 (405)
T d1lnsa3 127 SLNDYFLTRGFASIYVAGVGTRSSDGFQT-----SGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTG 201 (405)
T ss_dssp HHHHHHHTTTCEEEEECCTTSTTSCSCCC-----TTSHHHHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEE
T ss_pred cchHHHHhCCCEEEEECCCCCCCCCCccc-----cCChhhhhhHHHHHHHHHhcccccccccccccccccccCCeeEEEe
Confidence 46689999999999999999988765542 23445688999999999764321 236899999
Q ss_pred cChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchh--------------------------------------h
Q 004735 581 GSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF--------------------------------------E 621 (732)
Q Consensus 581 ~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~--------------------------------------~ 621 (732)
+||||++.+.++. .|+.++|+|..++..|+.......... .
T Consensus 202 ~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (405)
T d1lnsa3 202 KSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRL 281 (405)
T ss_dssp ETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhhhhhhccccccccccchhhhchhhhhhcc
Confidence 9999999999988 888999999999999875432110000 0
Q ss_pred hhhhh----hhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcc
Q 004735 622 SRYID----NLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697 (732)
Q Consensus 622 ~~~~~----~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 697 (732)
..... ......+.|.+.+++.++++|++|+|+++|..|..+++.++.++++++++ +.+.++++.++ +|......
T Consensus 282 ~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~~~~~~~~y~al~~-~~~~~Lilgpw-~H~~~~~~ 359 (405)
T d1lnsa3 282 AEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE-GHAKHAFLHRG-AHIYMNSW 359 (405)
T ss_dssp HHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-TCCEEEEEESC-SSCCCTTB
T ss_pred chhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCCHHHHHHHHHHHHh-CCCcEEEEeCC-CCCCCccc
Confidence 00000 00012356788899999999999999999999999999999999999964 55778888775 78654333
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCCCcc
Q 004735 698 NIKFTLEQQMVFFARVVGHFDVADEIIPI 726 (732)
Q Consensus 698 ~~~~~~~~~~~fl~~~l~~~~~~~~~~~~ 726 (732)
...+..+.+++||+++|++.++.-+.|++
T Consensus 360 ~~~d~~~~~~~wFD~~LkG~~ng~~~~~~ 388 (405)
T d1lnsa3 360 QSIDFSETINAYFVAKLLDRDLNLNLPPV 388 (405)
T ss_dssp SSCCHHHHHHHHHHHHHTTCCCCCCCCSE
T ss_pred ccchHHHHHHHHHHHHhCCCCCCCCCCCE
Confidence 33456778899999999987665344443
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.82 E-value=1.1e-19 Score=189.23 Aligned_cols=236 Identities=15% Similarity=0.127 Sum_probs=160.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC---cccHHHHHHHHCCCEEEEEcCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---ILNLSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~---~~~~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
..+..++.+. +|..+++.+|.|++ ...+.|+||++|||++..... .+...++.++++|+.|+.+|||.++
T Consensus 78 ~~~~~~i~~~-dg~~i~~~iy~P~~------~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~ 150 (358)
T d1jkma_ 78 ETSTETILGV-DGNEITLHVFRPAG------VEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAW 150 (358)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEETT------CCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSE
T ss_pred cEEEEEEeCC-CCCEEEEEEEecCC------CCCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeecccc
Confidence 4566778887 99999999999987 345789999999997754332 2345778899999999999999864
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh------CCCcceEEEeecCcCC
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA------FRDTFKAGASLYGVAD 609 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~------~p~~~~a~v~~~~~~d 609 (732)
+...+. .+ ...++|+.++++|+.++ ...|.+||+|+|+|.||++++.++. ....+.+.++.+|+.+
T Consensus 151 ~~~pe~------~~-p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~ 223 (358)
T d1jkma_ 151 TAEGHH------PF-PSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYIS 223 (358)
T ss_dssp ETTEEC------CT-THHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCC
T ss_pred cccccC------CC-chhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceec
Confidence 321110 11 13489999999999875 3457889999999999999987763 2446788888888765
Q ss_pred HHHHHhhcchh------------------hhhhhhhhcCChhhhhhcCccccC-------CCCCCCEEEEEeCCCCccCh
Q 004735 610 LSMLRAETHKF------------------ESRYIDNLVGSEKDYYEKSPINFV-------DKFSCPIILFQGLEDKVVPP 664 (732)
Q Consensus 610 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~sp~~~~-------~~i~~P~Lii~G~~D~~v~~ 664 (732)
..........+ ...+...+... .....+|.... .+--+|+||++|+.|.+ .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l--~ 299 (358)
T d1jkma_ 224 GGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPT--GEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPL--R 299 (358)
T ss_dssp CCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSS--STTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTT--H
T ss_pred cccCccchhhcccccchhcccccccchhhhhhHHhhcCCc--cCCccCccccccccchhhccCCCCEEEEECCCCCC--H
Confidence 32211100000 00111111110 00111121110 01236899999999965 4
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCC------CcccHHHHHHHHHHHHHHH
Q 004735 665 DQARKIYKALKENGLPVALVEYEGEQHGFR------KAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 665 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~------~~~~~~~~~~~~~~fl~~~ 713 (732)
.+++.++++|++.|+++++++|+|++|+|. .++..++..+.+..|+...
T Consensus 300 ~e~~~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 300 DEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999862 2244556677888888654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=2.9e-18 Score=172.06 Aligned_cols=245 Identities=14% Similarity=0.059 Sum_probs=167.4
Q ss_pred eEEE--CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 150 FRIF--GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 150 ~~~~--~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.+++ |++|+|+. .++||++|+++ +++++||.. ......|+|||||++|+|++....... ..+||+++
T Consensus 6 ~sPdi~G~~v~f~~--~~dl~~~d~~~--g~~~~Lt~~----~~~~~~p~~SPDG~~iaf~~~~~~~~~---~~~i~~~~ 74 (281)
T d1k32a2 6 LNPDIHGDRIIFVC--CDDLWEHDLKS--GSTRKIVSN----LGVINNARFFPDGRKIAIRVMRGSSLN---TADLYFYN 74 (281)
T ss_dssp EEEEEETTEEEEEE--TTEEEEEETTT--CCEEEEECS----SSEEEEEEECTTSSEEEEEEEESTTCC---EEEEEEEE
T ss_pred cCCCCCCCEEEEEe--CCcEEEEECCC--CCEEEEecC----CCcccCEEECCCCCEEEEEEeeCCCCC---ceEEEEEE
Confidence 4667 99999996 45799999998 899999987 345678999999999999876543222 46899999
Q ss_pred cCCCCccccEEcccCCC-------ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 228 LNGQNIQEPKVLVSGSD-------FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~-------~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
+.+++ .++|+.... ....+.|||||+.|+|........ ....++.++.+ +++. +.....
T Consensus 75 ~~~g~---~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~--~~~~~~~~~~~-~~~~---~~~~~~----- 140 (281)
T d1k32a2 75 GENGE---IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS--SMTCLYRVEND-GINF---VPLNLG----- 140 (281)
T ss_dssp TTTTE---EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST--TCCEEEEEEGG-GTEE---EECCSC-----
T ss_pred ecCCc---eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCc--cceeeeeecCC-Ccee---EEecCC-----
Confidence 99999 889986542 234578999999999987544332 34456777766 4443 222222
Q ss_pred ccCcCceeCCCCc-EEEEEeccCC--------eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEE
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRKNG--------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLI 371 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~~g--------~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l 371 (732)
.....|.+||. +++....... ...........+....++........+.| .++.+
T Consensus 141 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 204 (281)
T d1k32a2 141 --PATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVI--------------VGHRI 204 (281)
T ss_dssp --SCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEE--------------ETTEE
T ss_pred --ccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeee--------------ecccc
Confidence 23567888887 6555433111 11222233334444444433222222333 34578
Q ss_pred EEEEEECCEEEEEEEECCCCceEEeccC-CCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 372 ACSYRQNGRSYLGILDDFGHSLSLLDIP-FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 372 ~~~s~~~g~~~ly~~~~~~~~~~~lt~~-~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
++..+..+..+||++++++++.++||.. ...+..++.++++++|... .+||++|+++++.++|+
T Consensus 205 ~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 205 YFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKG-----GSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp EEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEET-----TEEEEECTTTCCEEECC
T ss_pred ceecccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEEEeC-----CEEEEEECCCCCEEEec
Confidence 8888888999999999999999999875 3445566777787776443 36999999999987665
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=5.3e-19 Score=176.15 Aligned_cols=188 Identities=19% Similarity=0.176 Sum_probs=134.7
Q ss_pred CCCCCEEEEEcCCCCCccC---CcccHH----HHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEAR---GILNLS----IQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF 564 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~---~~~~~~----~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~ 564 (732)
.++.|+||++|||++.... ..+... ...++++||.|+.+|||.+++.... ..++|+.++++|
T Consensus 28 ~~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~~~~-----------~~~~d~~~~~~~ 96 (263)
T d1vkha_ 28 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITNP-----------RNLYDAVSNITR 96 (263)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCTT-----------HHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcchhhh-----------HHHHhhhhhhhc
Confidence 4567999999998764322 233333 3444578999999999987764311 237899999999
Q ss_pred HHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC-----------------cceEEEeecCcCCHHHHHhhcchhhhhhhh
Q 004735 565 LVGSGKADEKRLCITGGSAGGYTTLAALA-FRD-----------------TFKAGASLYGVADLSMLRAETHKFESRYID 626 (732)
Q Consensus 565 l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~-----------------~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~ 626 (732)
+.++. +.++|+|+|||+||++++.++. .++ .+.+.+...+..++..+........ .++.
T Consensus 97 l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 173 (263)
T d1vkha_ 97 LVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYD-CFTR 173 (263)
T ss_dssp HHHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGH-HHHH
T ss_pred ccccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccc-hhhh
Confidence 99874 5679999999999999998876 222 4577777888888776654433221 2222
Q ss_pred hhcC-ChhhhhhcC------ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 627 NLVG-SEKDYYEKS------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 627 ~~~~-~~~~~~~~s------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
..+. ..+.+.... ....+.++.+|+|++||++|.++|++++.+++++|++.|++++++++++++|..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~~~~H~~ 247 (263)
T d1vkha_ 174 LAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHND 247 (263)
T ss_dssp HHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGGG
T ss_pred cccccccccccccccccCccccccccccCCCeeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEECCCCchh
Confidence 2222 222221111 112244567999999999999999999999999999999999999999999964
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=5.6e-20 Score=180.34 Aligned_cols=208 Identities=15% Similarity=0.126 Sum_probs=134.4
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcc---c-HHHHHHHHHHHHhc
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV---D-VNDCCSCATFLVGS 568 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~---~-~~D~~~~i~~l~~~ 568 (732)
++.|+||++||+++. ...+...++.|+++||.|++||+||.+.............+... . ..++.++...+...
T Consensus 22 ~~~~~vl~lHG~~~~--~~~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (238)
T d1ufoa_ 22 APKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEA 99 (238)
T ss_dssp SCCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEEecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhc
Confidence 346999999998543 33455667788999999999999986543221111100000000 0 12222333333334
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCC-C
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD-K 646 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-~ 646 (732)
+.++.++++++|+|+||++++.++. +|+ ++++++..+..+...+.......... ...+...++..... .
T Consensus 100 ~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 170 (238)
T d1ufoa_ 100 ERRFGLPLFLAGGSLGAFVAHLLLAEGFR-PRGVLAFIGSGFPMKLPQGQVVEDPG--------VLALYQAPPATRGEAY 170 (238)
T ss_dssp HHHHCCCEEEEEETHHHHHHHHHHHTTCC-CSCEEEESCCSSCCCCCTTCCCCCHH--------HHHHHHSCGGGCGGGG
T ss_pred cccCCceEEEEEecccHHHHHHHHhcCcc-hhheeeeeeecccccccccccccccc--------ccchhhhhhhhhhhhh
Confidence 4567789999999999999999988 665 56666655544322211111000000 11223344444433 3
Q ss_pred CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCC--CEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 647 FSCPIILFQGLEDKVVPPDQARKIYKALKENGL--PVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~--~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
.++|+|++||++|.++|++++.++++++++.+. ++++++++|+||.+. .+.++.+.+||.++|.+
T Consensus 171 ~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~g~gH~~~-----~~~~~~~~~f~~~~l~~ 237 (238)
T d1ufoa_ 171 GGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLT-----PLMARVGLAFLEHWLEA 237 (238)
T ss_dssp TTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHHC
T ss_pred cCCCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEEEECCCCCccC-----HHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999998876 478899999999864 34577888999999863
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.80 E-value=8.5e-19 Score=179.06 Aligned_cols=235 Identities=17% Similarity=0.202 Sum_probs=157.6
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC-CcccHHHHHHHHC-CCEEEEEcCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSR-GWAFVDVNYGGST 536 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~~-G~~v~~~d~rG~~ 536 (732)
...+.+++.. +|.++.+.+|.|++. +++.|+||++|||++.... .........++.+ |+.|+.+|||..+
T Consensus 44 ~~~~~~~~~~--~g~~i~~~~y~P~~~------~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p 115 (308)
T d1u4na_ 44 AEVREFDMDL--PGRTLKVRMYRPEGV------EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAP 115 (308)
T ss_dssp SEEEEEEEEE--TTEEEEEEEEECTTC------CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred CcEEEEEEec--CCceEEEEEEecccc------CCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccc
Confidence 3456677765 699999999999862 4568999999999764333 3344455666665 5678899999766
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEEEeecCcC
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F----RDTFKAGASLYGVA 608 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~----p~~~~a~v~~~~~~ 608 (732)
..... ...+|+.++++|+.++ ..+|++||+++|+|+||++++.++. . ...+.+..+.++..
T Consensus 116 ~~~~p-----------~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (308)
T d1u4na_ 116 EHKFP-----------AAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPST 184 (308)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCC
T ss_pred ccccc-----------cccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCccccccccccc
Confidence 53221 3378999999999875 4688999999999999999988875 2 22345556666654
Q ss_pred CHHHHHh------hcc------hhhhhhhhhhcCC--hhhhhhcCccccCCCCC-CCEEEEEeCCCCccChHHHHHHHHH
Q 004735 609 DLSMLRA------ETH------KFESRYIDNLVGS--EKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKA 673 (732)
Q Consensus 609 d~~~~~~------~~~------~~~~~~~~~~~~~--~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (732)
++..... ... ............. .......++........ +|+||++|+.|.. ..+++.++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l--~~~~~~~~~~ 262 (308)
T d1u4na_ 185 GYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPL--RDVGKLYAEA 262 (308)
T ss_dssp CCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTT--HHHHHHHHHH
T ss_pred ccccccccchhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCc--hHHHHHHHHH
Confidence 3221100 000 0000111111111 11112233333333333 5899999999965 4688999999
Q ss_pred HHhCCCCEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHHh
Q 004735 674 LKENGLPVALVEYEGEQHGFRK----AENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 674 l~~~g~~~~~~~~~~~gH~~~~----~~~~~~~~~~~~~fl~~~l 714 (732)
|++.|+++++++++|++|+|.. .+...+.++++.+||++.|
T Consensus 263 L~~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 263 LNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998742 2345678888999998876
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.79 E-value=1.6e-17 Score=159.79 Aligned_cols=206 Identities=17% Similarity=0.270 Sum_probs=157.3
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCC---CccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPT---SEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~---~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
+.++.+ +| ++++++..|. ....|++|++||.|. ..........++.|.++||.|+.+||||.+.+..
T Consensus 3 v~i~g~-~G-~Le~~~~~~~--------~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G 72 (218)
T d2i3da1 3 VIFNGP-AG-RLEGRYQPSK--------EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQG 72 (218)
T ss_dssp EEEEET-TE-EEEEEEECCS--------STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCS
T ss_pred EEEeCC-Cc-cEEEEEeCCC--------CCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCcc
Confidence 678887 66 8999877553 345689999998542 2222334457788999999999999998766433
Q ss_pred hhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchh
Q 004735 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKF 620 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~ 620 (732)
. .+++..+.+|..++++|+..+... ..++.++|+|+||.+++.++.......+.++..+.....
T Consensus 73 ~------~~~~~~e~~d~~aa~~~~~~~~~~-~~~~~~~g~S~G~~~a~~~a~~~~~~~~~~~~~~~~~~~--------- 136 (218)
T d2i3da1 73 E------FDHGAGELSDAASALDWVQSLHPD-SKSCWVAGYSFGAWIGMQLLMRRPEIEGFMSIAPQPNTY--------- 136 (218)
T ss_dssp C------CCSSHHHHHHHHHHHHHHHHHCTT-CCCEEEEEETHHHHHHHHHHHHCTTEEEEEEESCCTTTS---------
T ss_pred c------cccchhHHHHHHHHHhhhhccccc-ccceeEEeeehHHHHHHHHHHhhccccceeecccccccc---------
Confidence 2 233445689999999999988543 357999999999999999987444567777776653311
Q ss_pred hhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC-CCCEEEEEeCCCCccCCCcccH
Q 004735 621 ESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN-GLPVALVEYEGEQHGFRKAENI 699 (732)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~-g~~~~~~~~~~~gH~~~~~~~~ 699 (732)
+...+....+|+|+++|..|.+++..+..++.+.++.. +..+++++++|++|.|. ...
T Consensus 137 -------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~--g~~ 195 (218)
T d2i3da1 137 -------------------DFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFN--GKV 195 (218)
T ss_dssp -------------------CCTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--TCH
T ss_pred -------------------chhhccccCCCceeeecccceecChHHHHHHHHHHhhccCCCccEEEeCCCCCCCc--CCH
Confidence 11223455789999999999999999999999998864 56789999999999775 355
Q ss_pred HHHHHHHHHHHHHHhCC
Q 004735 700 KFTLEQQMVFFARVVGH 716 (732)
Q Consensus 700 ~~~~~~~~~fl~~~l~~ 716 (732)
.++.+.+.+||+++|..
T Consensus 196 ~~l~~~v~~~l~~~l~~ 212 (218)
T d2i3da1 196 DELMGECEDYLDRRLNG 212 (218)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 78889999999999973
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.78 E-value=3.1e-18 Score=180.19 Aligned_cols=260 Identities=18% Similarity=0.185 Sum_probs=175.3
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC----ccC------CcccHHHHHHHHCCCEEEEE
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS----EAR------GILNLSIQYWTSRGWAFVDV 530 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~----~~~------~~~~~~~~~l~~~G~~v~~~ 530 (732)
.+.+.++.+ ||.+|.+.+|.|++ .++.|+||+.|+.... ... .......+.|+++||+|+.+
T Consensus 28 ~~~v~ipmr-DG~~L~~~v~~P~~-------~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~ 99 (385)
T d2b9va2 28 KREVMVPMR-DGVKLYTVIVIPKN-------ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ 99 (385)
T ss_dssp EEEEEEECT-TSCEEEEEEEEETT-------CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred EeEEEEECC-CCCEEEEEEEEcCC-------CCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEE
Confidence 467889998 99999999999986 5789999998764210 000 11223567899999999999
Q ss_pred cCCCCCCCChhhHHh-----hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEee
Q 004735 531 NYGGSTGYGREFRER-----LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASL 604 (732)
Q Consensus 531 d~rG~~g~g~~~~~~-----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~ 604 (732)
|+||.++++..+... ....++..+.+|..++|+|+.+++..+.+||+++|+|+||++++.++. .++.+++++..
T Consensus 100 d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~ 179 (385)
T d2b9va2 100 DIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPE 179 (385)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred cCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEe
Confidence 999988876655432 223355567999999999999997778899999999999999999998 88899999998
Q ss_pred cCcCCHHHHHhhcch---------h------------------h---hhhhh--------------------hhc---CC
Q 004735 605 YGVADLSMLRAETHK---------F------------------E---SRYID--------------------NLV---GS 631 (732)
Q Consensus 605 ~~~~d~~~~~~~~~~---------~------------------~---~~~~~--------------------~~~---~~ 631 (732)
.+..+.......... + . ...+. ... ..
T Consensus 180 ~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~ 259 (385)
T d2b9va2 180 SPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAY 259 (385)
T ss_dssp EECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSS
T ss_pred cccccccccccccCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhhccCccc
Confidence 887664321000000 0 0 00000 000 00
Q ss_pred hhhhhhcCccccC--CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCC--CCEEEEEeCCCCccCC-------------
Q 004735 632 EKDYYEKSPINFV--DKFSCPIILFQGLEDKVVPPDQARKIYKALKENG--LPVALVEYEGEQHGFR------------- 694 (732)
Q Consensus 632 ~~~~~~~sp~~~~--~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g--~~~~~~~~~~~gH~~~------------- 694 (732)
.+.+...++...+ .++.+|+|++.|..|... .....+.++.++..+ .+.++++-|. +|...
T Consensus 260 d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~-~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~~~~g~~~~~ 337 (385)
T d2b9va2 260 DAFWQGQALDKILAQRKPTVPMLWEQGLWDQED-MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFE 337 (385)
T ss_dssp SHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSC-SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECS
T ss_pred chhhhhcChhHHHhhccccCceEEEEecccCCc-ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCcccccccccccccC
Confidence 1233344443333 356789999999887654 455666777777654 4678888775 56421
Q ss_pred CcccHHHHHHHHHHHHHHHhCCCCCCCCCCcccccC
Q 004735 695 KAENIKFTLEQQMVFFARVVGHFDVADEIIPIKIDN 730 (732)
Q Consensus 695 ~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~~~~ 730 (732)
.+.......+.+++||+.+|++..+..+.|++.+-+
T Consensus 338 ~~~~~~~~~~~~l~WFD~~LKG~~~~~~~p~v~~~~ 373 (385)
T d2b9va2 338 GDTAHQYRRDVFRPFFDEYLKPGSASVHLPDAIIYN 373 (385)
T ss_dssp SCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEE
T ss_pred cccchhhHHHHHHHHHHHHcCCCCCCCCCCCEEEEE
Confidence 111233445667899999999876655678877643
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=8.8e-19 Score=167.41 Aligned_cols=192 Identities=12% Similarity=0.043 Sum_probs=130.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|..+++....|.. +...|.||++||.+.+...+.....++.|+++||.|+++|+||.+ .+-.......+
T Consensus 14 ~G~~i~y~~~~~~~-------~~~~~~vvllHG~~~~~~~w~~~~~~~~la~~gy~via~D~~G~G---~S~~~~~~~~~ 83 (208)
T d1imja_ 14 QGQALFFREALPGS-------GQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLG---HSKEAAAPAPI 83 (208)
T ss_dssp TTEEECEEEEECSS-------SCCSCEEEECCCTTCCHHHHHHHTHHHHHHHTTCEEEEECCTTSG---GGTTSCCSSCT
T ss_pred CCEEEEEEEecCCC-------CCCCCeEEEECCCCCChhHHhhhHHHHHHHHcCCeEEEeeccccc---CCCCCCccccc
Confidence 79999887777754 455688999999854433222222457899999999999999654 33211111111
Q ss_pred Ccc-cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhh
Q 004735 551 GIV-DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 628 (732)
Q Consensus 551 ~~~-~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (732)
... ..+++.+.++.+ +.+++.|+||||||.+++.++. +|++++++|+.+|...-..
T Consensus 84 ~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~~~---------------- 141 (208)
T d1imja_ 84 GELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI---------------- 141 (208)
T ss_dssp TSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS----------------
T ss_pred chhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccccc----------------
Confidence 111 133344444443 3468999999999999999888 9999999999988632110
Q ss_pred cCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 004735 629 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 708 (732)
Q Consensus 629 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 708 (732)
......++++|+|+++|++|.++|... + .++ .-.+.++.+++++||.. ..++.+++.+.+++
T Consensus 142 -----------~~~~~~~i~~P~Lii~G~~D~~~~~~~--~---~~~-~~~~~~~~~i~~~gH~~-~~~~p~~~~~~l~~ 203 (208)
T d1imja_ 142 -----------NAANYASVKTPALIVYGDQDPMGQTSF--E---HLK-QLPNHRVLIMKGAGHPC-YLDKPEEWHTGLLD 203 (208)
T ss_dssp -----------CHHHHHTCCSCEEEEEETTCHHHHHHH--H---HHT-TSSSEEEEEETTCCTTH-HHHCHHHHHHHHHH
T ss_pred -----------ccccccccccccccccCCcCcCCcHHH--H---HHH-hCCCCeEEEECCCCCch-hhhCHHHHHHHHHH
Confidence 011234678999999999998876532 2 222 33467999999999963 23566788888999
Q ss_pred HHHH
Q 004735 709 FFAR 712 (732)
Q Consensus 709 fl~~ 712 (732)
||++
T Consensus 204 Fl~~ 207 (208)
T d1imja_ 204 FLQG 207 (208)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9874
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=2.7e-18 Score=173.45 Aligned_cols=245 Identities=13% Similarity=0.137 Sum_probs=169.6
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---HHHHHHHCCCEEEEEcCCCCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~rG~~g 537 (732)
.+.+++.+...|.+++..++.| .+++|+|+++||++.......+.. ..+.+.+.|++++.++..+...
T Consensus 9 v~~~~~~s~~~~r~~~~~v~~p---------~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (288)
T d1sfra_ 9 VEYLQVPSPSMGRDIKVQFQSG---------GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSF 79 (288)
T ss_dssp CEEEEEEETTTTEEEEEEEECC---------STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCT
T ss_pred EEEEEEECCCCCcEEEEEEeCC---------CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCC
Confidence 4667887766789999888876 346899999999765544433322 4567778899999999876544
Q ss_pred CChhhHHhhccCC---CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH
Q 004735 538 YGREFRERLLGRW---GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 613 (732)
Q Consensus 538 ~g~~~~~~~~~~~---~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~ 613 (732)
++..+........ ...+..-+.+.+.++.+++.+|++|++|+|+|+||++|+.++. +|++|+++++++|..+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~ 159 (288)
T d1sfra_ 80 YSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQA 159 (288)
T ss_dssp TCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTST
T ss_pred CccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCccccccc
Confidence 3332211110000 0111223567788888888899999999999999999999988 99999999999998875432
Q ss_pred Hhhcch------hhhhhhhhhcC--ChhhhhhcCccccCCCC---CCCEEEEEeCCCCccC--------------hHHHH
Q 004735 614 RAETHK------FESRYIDNLVG--SEKDYYEKSPINFVDKF---SCPIILFQGLEDKVVP--------------PDQAR 668 (732)
Q Consensus 614 ~~~~~~------~~~~~~~~~~~--~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~~v~--------------~~~~~ 668 (732)
...... .........++ +...+...+|...+.+. ..++++.+|..|..++ ..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~~~ 239 (288)
T d1sfra_ 160 MGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNI 239 (288)
T ss_dssp THHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhcccccHhhhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHHHH
Confidence 211100 00111111222 33456667776665433 4678999999997665 35678
Q ss_pred HHHHHHHhCCCCEEEEEeCCC-CccCCCcccHHHHHHHHHHHHHHHhCCC
Q 004735 669 KIYKALKENGLPVALVEYEGE-QHGFRKAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 669 ~~~~~l~~~g~~~~~~~~~~~-gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
++.++|++.|++.++..++++ +|.+ ..+...+...+.||.+.|+..
T Consensus 240 ~l~~~l~~~g~~~~~~~~~~~G~H~w---~~w~~~l~~~l~~l~~alg~~ 286 (288)
T d1sfra_ 240 KFQDAYNAGGGHNGVFDFPDSGTHSW---EYWGAQLNAMKPDLQRALGAT 286 (288)
T ss_dssp HHHHHHHHTTCCSEEEECCSCCCSSH---HHHHHHHHHTHHHHHHHHTCC
T ss_pred HHHHHHHHCCCCeEEEEECCCCccCh---hHHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999888865 6976 245677788899999999853
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.77 E-value=2.2e-17 Score=166.92 Aligned_cols=218 Identities=14% Similarity=0.115 Sum_probs=141.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~ 549 (732)
+|.++++..+-++ ..|.||++||++.+. ..| ..+.+.|.++||.|+++|+||.|........ .
T Consensus 8 g~~~i~y~~~G~~----------~~p~vvl~HG~~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~--~-- 71 (297)
T d1q0ra_ 8 GDVELWSDDFGDP----------ADPALLLVMGGNLSA--LGWPDEFARRLADGGLHVIRYDHRDTGRSTTRDFA--A-- 71 (297)
T ss_dssp TTEEEEEEEESCT----------TSCEEEEECCTTCCG--GGSCHHHHHHHHTTTCEEEEECCTTSTTSCCCCTT--T--
T ss_pred CCEEEEEEEecCC----------CCCEEEEECCCCcCh--hHHHHHHHHHHHhCCCEEEEEeCCCCccccccccc--c--
Confidence 5788887776432 247899999985443 333 3467788999999999999986654322111 1
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh-------c----
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-------T---- 617 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~-------~---- 617 (732)
.....+|..+.+..+++.. +.+++.++|||+||.+++.++. +|+++++++++++.......... .
T Consensus 72 -~~~~~~~~~~d~~~ll~~l--~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~ 148 (297)
T d1q0ra_ 72 -HPYGFGELAADAVAVLDGW--GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLD 148 (297)
T ss_dssp -SCCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSS
T ss_pred -cccccchhhhhhccccccc--cccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhhh
Confidence 1124666666555555553 4568999999999999999988 99999999998765421110000 0
Q ss_pred ------chh------------------hhhhhh--hhcC-----Chhhh--------------------------hhcCc
Q 004735 618 ------HKF------------------ESRYID--NLVG-----SEKDY--------------------------YEKSP 640 (732)
Q Consensus 618 ------~~~------------------~~~~~~--~~~~-----~~~~~--------------------------~~~sp 640 (732)
..+ ...... .+.. +...+ ...+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (297)
T d1q0ra_ 149 GLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSR 228 (297)
T ss_dssp CSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGG
T ss_pred hhhhhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhccccc
Confidence 000 000000 0000 00000 00112
Q ss_pred cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 641 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 641 ~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
...+++|++|+|+++|++|.++++..++++.+.++ +.++++++++||.+ ..+..+++.+.+++|+++
T Consensus 229 ~~~l~~i~~Pvlvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gH~~-~~e~p~~~~~~i~~~l~~ 295 (297)
T d1q0ra_ 229 AAELREVTVPTLVIQAEHDPIAPAPHGKHLAGLIP----TARLAEIPGMGHAL-PSSVHGPLAEVILAHTRS 295 (297)
T ss_dssp GGGGGGCCSCEEEEEETTCSSSCTTHHHHHHHTST----TEEEEEETTCCSSC-CGGGHHHHHHHHHHHHHH
T ss_pred hhhhhccCCceEEEEeCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCcc-hhhCHHHHHHHHHHHHHh
Confidence 23467789999999999999999988888776653 67999999999975 446777777777777764
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.76 E-value=3.4e-18 Score=166.16 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=131.3
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.+.||++||.++ ....|..+++.|+++||.|+++|+||.+..... ..... ......++...+..+... +.+
T Consensus 11 ~~~vvliHG~~~--~~~~~~~l~~~L~~~G~~v~~~D~~G~G~s~~~---~~~~~-~~~~~~~~~~~~~~~~~~---~~~ 81 (242)
T d1tqha_ 11 ERAVLLLHGFTG--NSADVRMLGRFLESKGYTCHAPIYKGHGVPPEE---LVHTG-PDDWWQDVMNGYEFLKNK---GYE 81 (242)
T ss_dssp SCEEEEECCTTC--CTHHHHHHHHHHHHTTCEEEECCCTTSSSCHHH---HTTCC-HHHHHHHHHHHHHHHHHH---TCC
T ss_pred CCeEEEECCCCC--CHHHHHHHHHHHHHCCCEEEEEeCCCCcccccc---ccccc-hhHHHHHHHHHHhhhhhc---ccC
Confidence 467889999743 345677889999999999999999976543222 11111 111234445555555444 357
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC-HHHHHhhcchhhhhhhhh--------------hcC----Chh-
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD-LSMLRAETHKFESRYIDN--------------LVG----SEK- 633 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d-~~~~~~~~~~~~~~~~~~--------------~~~----~~~- 633 (732)
+++++|||+||.+++.++. +|......+....... ..........+...+... ... ...
T Consensus 82 ~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (242)
T d1tqha_ 82 KIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKA 161 (242)
T ss_dssp CEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHHH
T ss_pred ceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccchhhc
Confidence 8999999999999999988 7765444333222221 111111000000000000 000 000
Q ss_pred -hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 634 -DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 634 -~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
..........+..+++|+|+++|++|.+++++.++++++.++ +.++++++++++||.....+..+++.+.+.+||++
T Consensus 162 ~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~Fl~~ 239 (242)
T d1tqha_ 162 LQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIE--SPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLES 239 (242)
T ss_dssp HHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCC--CSSEEEEEETTCCSSGGGSTTHHHHHHHHHHHHHH
T ss_pred ccccccccccccceeccccceeecccCCccCHHHHHHHHHHcC--CCCcEEEEECCCCCcCccccCHHHHHHHHHHHHHh
Confidence 001112234467788999999999999999999999988764 34679999999999865555678899999999986
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.76 E-value=2.1e-18 Score=169.83 Aligned_cols=227 Identities=15% Similarity=0.060 Sum_probs=149.9
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCC----EEEEEc
Q 004735 456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW----AFVDVN 531 (732)
Q Consensus 456 ~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~----~v~~~d 531 (732)
.-..+++++++.+...|.++.+++|.|.+.. .+++|+||++||+++..... .....+.+...|. .++.++
T Consensus 10 ~~~~~~~~~~~~S~~lg~~~~~~v~~P~~~~-----~~~~Pvvv~lhG~~~~~~~~-~~~~l~~l~~~~~~~~~i~v~~~ 83 (246)
T d3c8da2 10 APEIPAKEIIWKSERLKNSRRVWIFTTGDVT-----AEERPLAVLLDGEFWAQSMP-VWPVLTSLTHRQQLPPAVYVLID 83 (246)
T ss_dssp CCSSCCEEEEEEETTTTEEEEEEEEEC----------CCCCEEEESSHHHHHHTSC-CHHHHHHHHHTTSSCSCEEEEEC
T ss_pred CCCCCcEEEEEECCCCCCEEEEEEEECCCCC-----CCCCCEEEEeCCcchhccCc-HHHHHHHHHHhCCCCceEEeecc
Confidence 3456788899998646999999999998743 56789999999975433322 3344556666653 444444
Q ss_pred CCCCCCCChhhHHhhccCCCcccHHHHH-HHHHHHHhc--CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 532 YGGSTGYGREFRERLLGRWGIVDVNDCC-SCATFLVGS--GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 532 ~rG~~g~g~~~~~~~~~~~~~~~~~D~~-~~i~~l~~~--~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
.. .+....... ..+....+.+. +.+.++.+. ..+|+++++|+|+|+||++++.++. +|++|+++++++|.
T Consensus 84 ~~----~~~~~~~~~--~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~ 157 (246)
T d3c8da2 84 AI----DTTHRAHEL--PCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGS 157 (246)
T ss_dssp CC----SHHHHHHHS--SSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCC
T ss_pred cc----ccccccccc--CccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcc
Confidence 32 111111111 11111111111 223333332 3468899999999999999999998 99999999999998
Q ss_pred CCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 608 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 608 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
.++..... .+...+....+.....+...|+++.+|..|..+ ..++++|.++|+++|.++++.+++
T Consensus 158 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~g~~~~~~~~~ 222 (246)
T d3c8da2 158 YWWPHRGG--------------QQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVD 222 (246)
T ss_dssp TTTTCTTS--------------SSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEES
T ss_pred cccccCCc--------------cchHHHHHHhhhhhhhccCCCeEEEecCCCcch-hHHHHHHHHHHHHCCCCEEEEEeC
Confidence 76442111 122334444566667777899999999999876 578899999999999999999999
Q ss_pred CCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 688 GEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 688 ~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
| ||.+ ..+.+.+...+.||-+.
T Consensus 223 G-gH~~---~~W~~~l~~~l~~l~~~ 244 (246)
T d3c8da2 223 G-GHDA---LCWRGGLMQGLIDLWQP 244 (246)
T ss_dssp C-CSCH---HHHHHHHHHHHHHHHGG
T ss_pred C-CCCh---HHHHHHHHHHHHHHHHh
Confidence 7 7965 35566666666666543
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.75 E-value=6.9e-18 Score=161.50 Aligned_cols=182 Identities=13% Similarity=0.047 Sum_probs=128.0
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCC-----cccHHHHHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG-----IVDVNDCCSCATFLV 566 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~-----~~~~~D~~~~i~~l~ 566 (732)
.++.|+||++||.+.. ...+..+++.+.. ++.+++++.+.....+..+......... ..+++++.+.|+.+.
T Consensus 20 ~~~~p~vv~lHG~g~~--~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 96 (209)
T d3b5ea1 20 KESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAA 96 (209)
T ss_dssp SSCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCC--HHHHHHHHHHhcc-CcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHHH
Confidence 4568999999998433 3455566666654 7888988754221111111100000000 012455667778888
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCC
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 645 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 645 (732)
++..+|.+||+|+|+|+||++++.++. +|++|+++++++|..... +.....
T Consensus 97 ~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~----------------------------~~~~~~ 148 (209)
T d3b5ea1 97 KRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD----------------------------HVPATD 148 (209)
T ss_dssp HHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS----------------------------SCCCCC
T ss_pred HHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc----------------------------cccccc
Confidence 888899999999999999999999998 999999999999864311 111122
Q ss_pred CCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 646 ~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
..++|++++||++|++++ ..+.++.+.|++.|.+++++++++ ||++.. +..+.+.+||.
T Consensus 149 ~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~~-----~~~~~~~~wl~ 207 (209)
T d3b5ea1 149 LAGIRTLIIAGAADETYG-PFVPALVTLLSRHGAEVDARIIPS-GHDIGD-----PDAAIVRQWLA 207 (209)
T ss_dssp CTTCEEEEEEETTCTTTG-GGHHHHHHHHHHTTCEEEEEEESC-CSCCCH-----HHHHHHHHHHH
T ss_pred cccchheeeeccCCCccC-HHHHHHHHHHHHCCCCeEEEEECC-CCCCCH-----HHHHHHHHHhC
Confidence 346899999999999987 567789999999999999999997 798852 34556667763
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.75 E-value=1e-17 Score=175.60 Aligned_cols=245 Identities=16% Similarity=0.134 Sum_probs=152.6
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc----cHHHHHHHHCCCEEEEEcCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGGS 535 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~----~~~~~~l~~~G~~v~~~d~rG~ 535 (732)
+.|...+.+. ||..+..+.+...... ....++.|+||++||.+.+...+.. ..++..|+++||.|+++|+||.
T Consensus 26 ~~e~h~v~t~-DG~~l~~~ri~~~~~~--~~~~~~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~ 102 (377)
T d1k8qa_ 26 PAEEYEVVTE-DGYILGIDRIPYGRKN--SENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp CCEEEEEECT-TSEEEEEEEECSCSSC--CTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CceEEEEEcC-CCCEEEEEEecCCCCC--CccCCCCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCCCC
Confidence 3577888898 9998877655321111 1124567999999998665544322 2378899999999999999987
Q ss_pred CCCChhhHHhh----ccCC--CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeec---
Q 004735 536 TGYGREFRERL----LGRW--GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY--- 605 (732)
Q Consensus 536 ~g~g~~~~~~~----~~~~--~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~--- 605 (732)
+.......... ...+ ......|+.++++++.++.. .+++.++||||||.+++.++. +|+.++.+++..
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g--~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~~~~~~ 180 (377)
T d1k8qa_ 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTG--QDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA 180 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHC--CSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred CCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHcC--CCCEEEEEecchHHHHHHHHHhhhhhhhhceeEeecc
Confidence 66433211000 0011 11225688899999988743 468999999999999999988 887765544432
Q ss_pred CcCCH-------HHHHhh-----------------------------cch-hh---hhhhhhhcC------Ch---hh--
Q 004735 606 GVADL-------SMLRAE-----------------------------THK-FE---SRYIDNLVG------SE---KD-- 634 (732)
Q Consensus 606 ~~~d~-------~~~~~~-----------------------------~~~-~~---~~~~~~~~~------~~---~~-- 634 (732)
+.... ..+... ... .. ........+ +. ..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (377)
T d1k8qa_ 181 PVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYL 260 (377)
T ss_dssp CCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHH
T ss_pred ccccccchhhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcccccHHHhhhhh
Confidence 21110 000000 000 00 000000000 00 00
Q ss_pred --------------------------------------h-hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHH
Q 004735 635 --------------------------------------Y-YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 675 (732)
Q Consensus 635 --------------------------------------~-~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~ 675 (732)
+ ....+...+.++++|+|+++|++|.+++++..+++.+.++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~~~~~~~l~~~lp 340 (377)
T d1k8qa_ 261 SHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLP 340 (377)
T ss_dssp TTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCT
T ss_pred hcccccchHHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccCHHHHHHHHHHCC
Confidence 0 0011223456789999999999999999998888777664
Q ss_pred hCCCCEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHH
Q 004735 676 ENGLPVALVEYEGEQHG--FRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 676 ~~g~~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~ 712 (732)
. .+++++++++||. +...+..++++..+++||+.
T Consensus 341 ~---~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 341 N---LIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp T---EEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred C---CeEEEEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 3 3578899999995 23446778899999999974
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.74 E-value=5e-17 Score=162.02 Aligned_cols=219 Identities=16% Similarity=0.188 Sum_probs=135.0
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 545 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~ 545 (732)
++++ ||.++++..+ +. .|.||++||.+.+ ...|...++.|+++||.|+++|+||.+.....
T Consensus 3 ~~t~-dG~~l~y~~~-----------G~-g~~ivlvHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~---- 63 (274)
T d1a8qa_ 3 CTTR-DGVEIFYKDW-----------GQ-GRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPV---- 63 (274)
T ss_dssp EECT-TSCEEEEEEE-----------CS-SSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC----
T ss_pred EECc-CCCEEEEEEE-----------CC-CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCCCcccccc----
Confidence 4566 8988886544 11 2568899998433 45667778889999999999999986543221
Q ss_pred hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHH-----------
Q 004735 546 LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSM----------- 612 (732)
Q Consensus 546 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~----------- 612 (732)
. ......+....+..+++.. ..+++.++|||+||.+++.+++ +|+++++++++++......
T Consensus 64 -~---~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (274)
T d1a8qa_ 64 -W---DGYDFDTFADDLNDLLTDL--DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPD 137 (274)
T ss_dssp -S---SCCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCH
T ss_pred -c---ccccchhhHHHHHHHHHHh--hhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhH
Confidence 1 1122344433343333332 3468999999999999887665 6999999998876431100
Q ss_pred -----HHh----hcchhhhhhhhhhcC-----------------------Ch-------hhhhhcCccccCCCCCCCEEE
Q 004735 613 -----LRA----ETHKFESRYIDNLVG-----------------------SE-------KDYYEKSPINFVDKFSCPIIL 653 (732)
Q Consensus 613 -----~~~----~~~~~~~~~~~~~~~-----------------------~~-------~~~~~~sp~~~~~~i~~P~Li 653 (732)
+.. ....+.......... .. ..+...+....+.++++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvli 217 (274)
T d1a8qa_ 138 EVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLV 217 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEE
T ss_pred HHHHHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhccceeee
Confidence 000 000000000111110 00 011112223346789999999
Q ss_pred EEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCC-CcccHHHHHHHHHHHHHH
Q 004735 654 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR-KAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 654 i~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~-~~~~~~~~~~~~~~fl~~ 712 (732)
++|++|.+++++...+....+- .++++++++++||... ..+..+.+.+.+.+||+|
T Consensus 218 i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 218 VHGDDDQVVPIDATGRKSAQII---PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp EEETTCSSSCGGGTHHHHHHHS---TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred eccCCCCCcCHHHHHHHHHHhC---CCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 9999999999876544333321 2568999999999753 335667788888899864
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.74 E-value=4.4e-18 Score=170.88 Aligned_cols=219 Identities=17% Similarity=0.178 Sum_probs=136.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+.+. ...|.||++||+++... .+......+++.||.|+++|+||.|.+.... ...
T Consensus 10 ~g~~i~y~~~g~~---------~~~~~iv~lHG~~g~~~--~~~~~~~~~~~~~~~vi~~D~~G~G~S~~~~----~~~- 73 (290)
T d1mtza_ 10 NGIYIYYKLCKAP---------EEKAKLMTMHGGPGMSH--DYLLSLRDMTKEGITVLFYDQFGCGRSEEPD----QSK- 73 (290)
T ss_dssp TTEEEEEEEECCS---------SCSEEEEEECCTTTCCS--GGGGGGGGGGGGTEEEEEECCTTSTTSCCCC----GGG-
T ss_pred CCEEEEEEEcCCC---------CCCCeEEEECCCCCchH--HHHHHHHHHHHCCCEEEEEeCCCCccccccc----ccc-
Confidence 7999987766542 23588999999865432 3334445577889999999999876532210 111
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcch----------
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHK---------- 619 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~---------- 619 (732)
...++..+.+..++++. ...+++.++|||+||.+++.++. +|++++++++.++.............
T Consensus 74 --~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (290)
T d1mtza_ 74 --FTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYR 150 (290)
T ss_dssp --CSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHH
T ss_pred --ccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeecccccCcccchhhhhhhhhhhhHHHH
Confidence 12333333333333321 12368999999999999999988 99999999999887643221100000
Q ss_pred ----------------h---hhhhh-hhhcC----Chhh---------------------------hhhcCccccCCCCC
Q 004735 620 ----------------F---ESRYI-DNLVG----SEKD---------------------------YYEKSPINFVDKFS 648 (732)
Q Consensus 620 ----------------~---~~~~~-~~~~~----~~~~---------------------------~~~~sp~~~~~~i~ 648 (732)
+ ...+. ..... .++. ....+......+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (290)
T d1mtza_ 151 DAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIK 230 (290)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGCC
T ss_pred HHHHHhhhhccccchhHHHHHHHHhhhhhcccccchHHHHHHHHHHhhhhhhhhhcchhHHhHhhhhhcccHHHHhhccc
Confidence 0 00000 00000 0000 00111223355678
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+|+|+++|++|.++| ..+..+.+.++ ++++++++++||.. ..+..+++.+.+.+||+++|
T Consensus 231 ~P~l~i~G~~D~~~~-~~~~~~~~~~~----~~~~~~~~~~gH~~-~~e~p~~~~~~i~~FL~~h~ 290 (290)
T d1mtza_ 231 IPTLITVGEYDEVTP-NVARVIHEKIA----GSELHVFRDCSHLT-MWEDREGYNKLLSDFILKHL 290 (290)
T ss_dssp SCEEEEEETTCSSCH-HHHHHHHHHST----TCEEEEETTCCSCH-HHHSHHHHHHHHHHHHHTCC
T ss_pred ceEEEEEeCCCCCCH-HHHHHHHHHCC----CCEEEEECCCCCch-HHhCHHHHHHHHHHHHHHhC
Confidence 999999999998754 56666666554 45899999999964 33567788899999999875
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.5e-17 Score=159.89 Aligned_cols=191 Identities=15% Similarity=0.055 Sum_probs=126.0
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCC-----C-CCChhhHHhhccCC-Cccc---HHHHHH--
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-----T-GYGREFRERLLGRW-GIVD---VNDCCS-- 560 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~-----~-g~g~~~~~~~~~~~-~~~~---~~D~~~-- 560 (732)
+..++||++||.+.. ...+......+...++.+++|+-+.. . ..+..|........ ...+ +++..+
T Consensus 19 ~~~~~VI~lHG~G~~--~~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~l 96 (229)
T d1fj2a_ 19 KATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENI 96 (229)
T ss_dssp CCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCC--HHHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHHH
Confidence 445799999997433 23343444445567899998874310 0 01111111000000 1112 222222
Q ss_pred --HHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhh
Q 004735 561 --CATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYE 637 (732)
Q Consensus 561 --~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (732)
.++...+ ..++.+||+|+|+|+||.+++.++. +|++++++++++|.........
T Consensus 97 ~~li~~~~~-~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~~---------------------- 153 (229)
T d1fj2a_ 97 KALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP---------------------- 153 (229)
T ss_dssp HHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC----------------------
T ss_pred HHHhhhhhh-cCCCccceeeeecccchHHHHHHHHhhccccCcccccccccccccccc----------------------
Confidence 2333333 3589999999999999999999888 9999999999998643221000
Q ss_pred cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHh--CCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 638 KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE--NGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 638 ~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~--~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
..+ ....+.++|+|++||++|.+||++.+++.++.|++ .+.++++++|++.||.+. .+.++.+.+||+++|
T Consensus 154 ~~~-~~~~~~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~wL~~~L 226 (229)
T d1fj2a_ 154 QGP-IGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQEMMDVKQFIDKLL 226 (229)
T ss_dssp SSC-CCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHHHHHHHHHHHHHS
T ss_pred ccc-cccccccCceeEEEcCCCCeeCHHHHHHHHHHHHhcCCCCceEEEEeCCCCCccC-----HHHHHHHHHHHHhHC
Confidence 000 11223358999999999999999999999999988 356899999999999864 355788999999998
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.74 E-value=6e-17 Score=160.23 Aligned_cols=202 Identities=15% Similarity=0.064 Sum_probs=133.3
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-----cHHHHHHHHCC----CEEEE
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-----NLSIQYWTSRG----WAFVD 529 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-----~~~~~~l~~~G----~~v~~ 529 (732)
.+.+.++|.+..+|.++++++|.|++.+ +++++|+|+++||+++....... ......+...+ +.+..
T Consensus 20 g~~~~~~~~S~~~g~~~~~~v~lP~~y~----~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T d1jjfa_ 20 GQVVNISYFSTATNSTRPARVYLPPGYS----KDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVT 95 (255)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECTTCC----TTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEE
T ss_pred eEEEEEEEEecCCCCEEEEEEEeCCCCC----CCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeee
Confidence 3567788887657999999999998843 46789999999998655433211 11223333332 34444
Q ss_pred EcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc--CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecC
Q 004735 530 VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS--GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYG 606 (732)
Q Consensus 530 ~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~--~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~ 606 (732)
.+.............. .....+.+.+.++.++ ..+|+++++++|+|+||++++.++. +|++|+++++++|
T Consensus 96 ~~~~~~~~~~~~~~~~-------~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg 168 (255)
T d1jjfa_ 96 PNTNAAGPGIADGYEN-------FTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISA 168 (255)
T ss_dssp ECCCCCCTTCSCHHHH-------HHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESC
T ss_pred cccccccccccccccc-------hHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEcc
Confidence 4443222111111110 0122333445555553 3478899999999999999999988 9999999999998
Q ss_pred cCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe
Q 004735 607 VADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 686 (732)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (732)
..+........ ............|+++.||++|..++ ..+++++.|+++|+++++.++
T Consensus 169 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~~~~~~ 226 (255)
T d1jjfa_ 169 APNTYPNERLF--------------------PDGGKAAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLI 226 (255)
T ss_dssp CTTSCCHHHHC--------------------TTTTHHHHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEE
T ss_pred CcCCccccccc--------------------ccHHHHhhccCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCEEEEEE
Confidence 76532211000 00111122234789999999998865 467899999999999999999
Q ss_pred CCCCccC
Q 004735 687 EGEQHGF 693 (732)
Q Consensus 687 ~~~gH~~ 693 (732)
++++|.+
T Consensus 227 ~~ggH~~ 233 (255)
T d1jjfa_ 227 QGGGHDF 233 (255)
T ss_dssp TTCCSSH
T ss_pred CCCCcCH
Confidence 9999975
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=3.5e-18 Score=170.34 Aligned_cols=211 Identities=15% Similarity=0.112 Sum_probs=147.3
Q ss_pred CCCcEEEEeeccCCC-eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCC
Q 004735 458 FSLPELIEFPTEVPG-QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g-~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
..+.+.++|.+. +| .++.++++.|.+.+ +.+++|+|+++||+++...... ....+....+|+.|+.+++++..
T Consensus 10 ~~~~~~~~~~s~-dg~~~~~~~v~~P~~~~----~~~~yPvi~~lhG~~~~~~~~~-~~~~~~~~~~~~~vV~v~~~~~~ 83 (265)
T d2gzsa1 10 FYHFSATSFDSV-DGTRHYRVWTAVPNTTA----PASGYPILYMLDGNAVMDRLDD-ELLKQLSEKTPPVIVAVGYQTNL 83 (265)
T ss_dssp SEEEEEEEEECT-TSSCEEEEEEEEESSCC----CTTCEEEEEESSHHHHHHHCCH-HHHHHHTTSCCCEEEEEEESSSS
T ss_pred cceeEEEEEEcC-CCCEEEEEEEEcCCCCC----CCCCceEEEEecCcchhhhHHH-HHHHHHHhcCCCeEEEecCCCCC
Confidence 345678899998 76 57999999998843 4678999999999743221111 12334455679999999999887
Q ss_pred CCChhhHHhhccCC-----------------Cc-ccHH--HHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCC
Q 004735 537 GYGREFRERLLGRW-----------------GI-VDVN--DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD 596 (732)
Q Consensus 537 g~g~~~~~~~~~~~-----------------~~-~~~~--D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~ 596 (732)
.++...+......+ +. .... ...+++.++.+++.+|+++++|+|+|+||++++.++.+++
T Consensus 84 ~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~~~ 163 (265)
T d2gzsa1 84 PFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSS 163 (265)
T ss_dssp SCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHHCS
T ss_pred cCcccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHcCc
Confidence 76554322211100 00 0011 2233566777788889999999999999999999888778
Q ss_pred cceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCC--------CCccChHHHH
Q 004735 597 TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLE--------DKVVPPDQAR 668 (732)
Q Consensus 597 ~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~--------D~~v~~~~~~ 668 (732)
.|.++++.+|...+.. ...+...++.........|+++.+|+. |..+++.+.+
T Consensus 164 ~f~~~~a~s~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~ 224 (265)
T d2gzsa1 164 YFRSYYSASPSLGRGY-------------------DALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIH 224 (265)
T ss_dssp SCSEEEEESGGGSTTH-------------------HHHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHHHH
T ss_pred ccCEEEEECCcccccc-------------------hhhhhccccccccccCCCcEEEEcCCcccccccccccchhHHHHH
Confidence 8999999988764322 112222334444555667888888877 6667889999
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 669 KIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 669 ~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
+++++|+++|+++++.+|||++|+.
T Consensus 225 ~l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 225 TTLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp HHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred HHHHHHHHCCCCEEEEEcCCCCcch
Confidence 9999999999999999999999973
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.74 E-value=2.1e-17 Score=165.86 Aligned_cols=226 Identities=19% Similarity=0.121 Sum_probs=137.4
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc-CCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~-~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+..+++ ++..+++...-++ ..|+||++||.+.... ...|...+..|+ +||.|+++|+||.|.....
T Consensus 6 ~~~~~~--~~~~~h~~~~G~~----------~~p~ivllHG~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~~~ 72 (281)
T d1c4xa_ 6 EKRFPS--GTLASHALVAGDP----------QSPAVVLLHGAGPGAHAASNWRPIIPDLA-ENFFVVAPDLIGFGQSEYP 72 (281)
T ss_dssp EEEECC--TTSCEEEEEESCT----------TSCEEEEECCCSTTCCHHHHHGGGHHHHH-TTSEEEEECCTTSTTSCCC
T ss_pred EEEEcc--CCEEEEEEEEecC----------CCCEEEEECCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeCCCCcccccc
Confidence 345554 4677887666443 2489999999754332 233555666665 5899999999976543221
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH--------HH
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL--------SM 612 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~--------~~ 612 (732)
...........++..+.+..++++. ..+++.++|||+||.+++.++. +|+++++++++++.... ..
T Consensus 73 ---~~~~~~~~~~~~~~~~~i~~~i~~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~ 147 (281)
T d1c4xa_ 73 ---ETYPGHIMSWVGMRVEQILGLMNHF--GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELAR 147 (281)
T ss_dssp ---SSCCSSHHHHHHHHHHHHHHHHHHH--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHH
T ss_pred ---ccccccchhhHHHhhhhcccccccc--ccccceeccccccccccccccccccccccceEEeccccCccccchhHHHH
Confidence 1000000011233333333333332 2468999999999999999998 99999999998875321 11
Q ss_pred HHhhcc--h--hhhhhhhhhcC--------------------Ch-------hhh--------hhcCccccCCCCCCCEEE
Q 004735 613 LRAETH--K--FESRYIDNLVG--------------------SE-------KDY--------YEKSPINFVDKFSCPIIL 653 (732)
Q Consensus 613 ~~~~~~--~--~~~~~~~~~~~--------------------~~-------~~~--------~~~sp~~~~~~i~~P~Li 653 (732)
+..... . .....+..... +. ..+ ....+...+.++++|+|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 227 (281)
T d1c4xa_ 148 LLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLV 227 (281)
T ss_dssp HHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEE
T ss_pred HHHhhhhcccchhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccceEE
Confidence 100000 0 00000000000 00 000 001122336788999999
Q ss_pred EEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 654 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 654 i~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++|++|.++|++.++.+.+.++ +.++++++++||.. ..+..+++.+.+++||+
T Consensus 228 i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 228 FHGRQDRIVPLDTSLYLTKHLK----HAELVVLDRCGHWA-QLERWDAMGPMLMEHFR 280 (281)
T ss_dssp EEETTCSSSCTHHHHHHHHHCS----SEEEEEESSCCSCH-HHHSHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCHHHHHHHHHHCC----CCEEEEECCCCCch-HHhCHHHHHHHHHHHhC
Confidence 9999999999988888877663 56899999999964 34667788888889886
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=4.5e-16 Score=154.92 Aligned_cols=255 Identities=11% Similarity=0.089 Sum_probs=184.3
Q ss_pred CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCC--eEEEEeCCCCCC
Q 004735 100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDS 177 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~--~l~~~d~~~~~~ 177 (732)
.+|+|+..+......+.||..+.+ |...+.|+.....+ ....|+++|.+|+|.....+ .+|.++..+ +
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~d-G~~~~~l~~~~~~~-------~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~ 73 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPL-------MSPAWSPDGSKLAYVTFESGRSALVIQTLAN--G 73 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCE-------EEEEECTTSSEEEEEECTTSSCEEEEEETTT--C
T ss_pred CeEEEEEEeCCCCceEEEEEEcCC-CCCcEEEecCCCce-------eeeEECCCCCEEEEEEeeccCcceeeeeccc--C
Confidence 578888887766777788888766 33556665332111 12346667779999976654 799999987 7
Q ss_pred CceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCe
Q 004735 178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGER 257 (732)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~ 257 (732)
..++++.. ......+.|||||+++++....... ..+......... .............|.++++++.
T Consensus 74 ~~~~~~~~----~~~~~~~~~spdg~~i~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 140 (269)
T d2hqsa1 74 AVRQVASF----PRHNGAPAFSPDGSKLAFALSKTGS------LNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQN 140 (269)
T ss_dssp CEEEEECC----SSCEEEEEECTTSSEEEEEECTTSS------CEEEEEETTTCC---EEECCCCSSCEEEEEECTTSSE
T ss_pred ceeEEeee----ecccccceecCCCCeeeEeeecCCc------cceeeccccccc---ceeeeecccccccccccccccc
Confidence 78888876 2333567899999999888764432 355555555555 5555555556667899999999
Q ss_pred EEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCe
Q 004735 258 MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 258 la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
+++.+... ...+|++.+++ .+.. ..+.... .....+.|+|||+ +++.+.. .+...|+.++..++.
T Consensus 141 ~~~~~~~~-----g~~~i~~~~~~-~~~~---~~~~~~~----~~~~~~~~spdg~~~~~~~~~-~~~~~i~~~~~~~~~ 206 (269)
T d2hqsa1 141 LAFTSDQA-----GRPQVYKVNIN-GGAP---QRITWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGG 206 (269)
T ss_dssp EEEEECTT-----SSCEEEEEETT-SSCC---EECCCSS----SEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCC
T ss_pred ceeccccc-----CCceEeeeecc-cccc---eeeeccc----ccccccccccccceeEEEeec-CCceeeeEeeccccc
Confidence 99887443 24579999987 4543 2222332 4567889999999 8888887 788899999988877
Q ss_pred EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceE
Q 004735 337 VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDID 404 (732)
Q Consensus 337 ~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~ 404 (732)
.+.+. .......|.|+| ||+.|+|.+++.+..+||+++++++..++|+.....+.
T Consensus 207 ~~~~~-~~~~~~~p~~SP------------DG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~ 261 (269)
T d2hqsa1 207 VQVLS-STFLDETPSLAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 261 (269)
T ss_dssp EEECC-CSSSCEEEEECT------------TSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEE
T ss_pred ceEee-cCccccceEECC------------CCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEE
Confidence 65544 333445677877 99999999999999999999999999999998766544
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=5.3e-17 Score=166.09 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=145.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
....+... +|.++++.-+ + ..|.||++||.+.+ ...|...++.|+++||.|+++|+||.+.....
T Consensus 12 ~~~~v~~~-~g~~i~y~~~-----------G-~gp~vlllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~ 76 (322)
T d1zd3a2 12 SHGYVTVK-PRVRLHFVEL-----------G-SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKGYGESSAP 76 (322)
T ss_dssp EEEEEEEE-TTEEEEEEEE-----------C-CSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEEECTTSTTSCCC
T ss_pred ceeEEEEC-CCCEEEEEEE-----------c-CCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEeccccccccccc
Confidence 34455666 8999886544 1 13789999998554 45566788999999999999999976543211
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH-------HHH
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL-------SML 613 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~-------~~~ 613 (732)
... .....++....+..++++ ++.+++.++|||+||.+++.++. +|+++++++++++.... ...
T Consensus 77 ---~~~---~~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 148 (322)
T d1zd3a2 77 ---PEI---EEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLES 148 (322)
T ss_dssp ---SCG---GGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCCSSSCHHHH
T ss_pred ---ccc---ccccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcccccccccccchhhh
Confidence 111 112356666666666555 24568999999999999999998 99999999988753210 000
Q ss_pred Hhh-------------------cchhhhhhhhhhcC--------------------------------Ch---h----h-
Q 004735 614 RAE-------------------THKFESRYIDNLVG--------------------------------SE---K----D- 634 (732)
Q Consensus 614 ~~~-------------------~~~~~~~~~~~~~~--------------------------------~~---~----~- 634 (732)
... ........+...+. .. . .
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (322)
T d1zd3a2 149 IKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQF 228 (322)
T ss_dssp HHTCGGGHHHHHTTSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHHHH
T ss_pred hhccchhhhHHhhhccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHHHHHHHHHH
Confidence 000 00000000000000 00 0 0
Q ss_pred -----------------hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcc
Q 004735 635 -----------------YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697 (732)
Q Consensus 635 -----------------~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 697 (732)
.....+.....++++|+|+++|++|.+++++..+.+.+.+ .+.++++++++||.. ..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e 303 (322)
T d1zd3a2 229 KKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWI----PHLKRGHIEDCGHWT-QMD 303 (322)
T ss_dssp HHHTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTC----TTCEEEEETTCCSCH-HHH
T ss_pred hhcccccccccccccccccccchhhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhC----CCCEEEEECCCCCch-HHh
Confidence 0011122335678999999999999999987766654443 356899999999954 346
Q ss_pred cHHHHHHHHHHHHHHHhC
Q 004735 698 NIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 698 ~~~~~~~~~~~fl~~~l~ 715 (732)
..+++.+.+.+||++.-+
T Consensus 304 ~p~~v~~~i~~FL~~~~~ 321 (322)
T d1zd3a2 304 KPTEVNQILIKWLDSDAR 321 (322)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhhcCC
Confidence 677888999999998754
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.72 E-value=4.5e-17 Score=162.34 Aligned_cols=220 Identities=17% Similarity=0.205 Sum_probs=136.0
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~ 544 (732)
++.+. ||.++++..+-|++ .|.||++||.+.. ...|...+..|+++||.|+++|+||.+.....
T Consensus 2 ~i~~~-dG~~l~y~~~G~~~----------~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~--- 65 (275)
T d1a88a_ 2 TVTTS-DGTNIFYKDWGPRD----------GLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQP--- 65 (275)
T ss_dssp EEECT-TSCEEEEEEESCTT----------SCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC---
T ss_pred EEEec-CCCEEEEEEecCCC----------CCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEecccccccccc---
Confidence 45666 99999988887643 2678899998543 45567788889999999999999976543221
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcCh-HHHHHHHHHh-CCCcceEEEeecCcCCHH-----------
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSA-GGYTTLAALA-FRDTFKAGASLYGVADLS----------- 611 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~-GG~~a~~~~~-~p~~~~a~v~~~~~~d~~----------- 611 (732)
.. ..+.++..+.+..+++.. +.+++.++|||+ ||.+++.++. +|++++.++++++.....
T Consensus 66 --~~---~~~~~~~~~~~~~~l~~l--~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 138 (275)
T d1a88a_ 66 --ST---GHDMDTYAADVAALTEAL--DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLP 138 (275)
T ss_dssp --SS---CCSHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBC
T ss_pred --cc---cccccccccccccccccc--cccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhhh
Confidence 11 123344444444444431 346788899887 5555666666 999999999987642100
Q ss_pred -HHHh--------hcchhhhhhhhhh-cC-----------------------Chh-------hhhhcCccccCCCCCCCE
Q 004735 612 -MLRA--------ETHKFESRYIDNL-VG-----------------------SEK-------DYYEKSPINFVDKFSCPI 651 (732)
Q Consensus 612 -~~~~--------~~~~~~~~~~~~~-~~-----------------------~~~-------~~~~~sp~~~~~~i~~P~ 651 (732)
.... ....+........ .. ... .+...+....+.++++|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 218 (275)
T d1a88a_ 139 LEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPV 218 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCE
T ss_pred hhhhhhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHhhcccc
Confidence 0000 0000000000000 00 000 001111222356689999
Q ss_pred EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 652 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
|+++|++|.++|.....+....+ ..++++++++++||.+ ..+..+++.+.+.+||+
T Consensus 219 l~i~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 219 LVAHGTDDQVVPYADAAPKSAEL---LANATLKSYEGLPHGM-LSTHPEVLNPDLLAFVK 274 (275)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHH---STTEEEEEETTCCTTH-HHHCHHHHHHHHHHHHH
T ss_pred ceeecCCCCCcCHHHHHHHHHHh---CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHHc
Confidence 99999999999886654444333 2367999999999964 33567888899999986
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.72 E-value=6.5e-17 Score=160.96 Aligned_cols=215 Identities=13% Similarity=0.095 Sum_probs=139.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC-CcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~ 549 (732)
+|.++++.-+ +. .|.||++||.+..... ..|...+..| +.||.|+++|+||.+......
T Consensus 11 ~G~~~~Y~~~-----------G~-G~pvvllHG~~~~~~~~~~~~~~~~~l-~~~~~vi~~Dl~G~G~S~~~~------- 70 (271)
T d1uk8a_ 11 AGVLTNYHDV-----------GE-GQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGFGFTDRPE------- 70 (271)
T ss_dssp TTEEEEEEEE-----------CC-SSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCCT-------
T ss_pred CCEEEEEEEE-----------ee-CCeEEEECCCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCCCCCccccc-------
Confidence 7888886543 22 2567889997544322 2234445555 469999999999766533211
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH---HH----HHhhcch--
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---SM----LRAETHK-- 619 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~---~~----~~~~~~~-- 619 (732)
......++..+.+..+.++. +.+++.++|||+||.+++.++. +|++++++++..+.... .. .......
T Consensus 71 ~~~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (271)
T d1uk8a_ 71 NYNYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIE 148 (271)
T ss_dssp TCCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHH
T ss_pred cccccccccchhhhhhhhhh--cCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhH
Confidence 11234667777777777764 4468999999999999999988 99999999988765321 00 0000000
Q ss_pred hhhhhhh-------------------hhcC-C-hhhh-------------hhcCccccCCCCCCCEEEEEeCCCCccChH
Q 004735 620 FESRYID-------------------NLVG-S-EKDY-------------YEKSPINFVDKFSCPIILFQGLEDKVVPPD 665 (732)
Q Consensus 620 ~~~~~~~-------------------~~~~-~-~~~~-------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~ 665 (732)
.....+. .... . .+.+ ........+.++++|+|+++|++|.++|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~ 228 (271)
T d1uk8a_ 149 NMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLS 228 (271)
T ss_dssp HHHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHH
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEEecCCCCCcCHH
Confidence 0000000 0000 0 0000 011122346788999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 666 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
.+..+.+.+. +.++++++++||.. ..++.+++.+.+.+||++
T Consensus 229 ~~~~~~~~~~----~~~~~~~~~~gH~~-~~e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 229 SSLRLGELID----RAQLHVFGRCGHWT-QIEQTDRFNRLVVEFFNE 270 (271)
T ss_dssp HHHHHHHHCT----TEEEEEESSCCSCH-HHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC----CCEEEEECCCCCch-HHHCHHHHHHHHHHHHhc
Confidence 8888877764 57999999999964 346778888899999875
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.72 E-value=4.6e-17 Score=161.77 Aligned_cols=215 Identities=15% Similarity=0.108 Sum_probs=134.9
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc-CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA-RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~-~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~ 549 (732)
+|.++++.-. ++. |.||++||++.... ...|......| ++||.|+++|+||.+..... .
T Consensus 10 dg~~l~y~~~-----------G~g-~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G~G~S~~~-----~-- 69 (268)
T d1j1ia_ 10 GGVETRYLEA-----------GKG-QPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLGFGKTAKP-----D-- 69 (268)
T ss_dssp TTEEEEEEEE-----------CCS-SEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTSTTSCCC-----S--
T ss_pred CCEEEEEEEE-----------cCC-CeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEcccccccccCC-----c--
Confidence 7999885432 222 56889999754322 22344455666 56899999999976543221 1
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc---------ch
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET---------HK 619 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~---------~~ 619 (732)
.....++....+..+++...+ .+++.++|||+||.+++.++. +|++++++|++++........... ..
T Consensus 70 -~~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (268)
T d1j1ia_ 70 -IEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTRE 147 (268)
T ss_dssp -SCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHH
T ss_pred -cccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhh
Confidence 112244555555444444333 257999999999999999988 999999999988742111000000 00
Q ss_pred hhhhhhhhhcC------------------C----------hhhhh----hcCccccCCCCCCCEEEEEeCCCCccChHHH
Q 004735 620 FESRYIDNLVG------------------S----------EKDYY----EKSPINFVDKFSCPIILFQGLEDKVVPPDQA 667 (732)
Q Consensus 620 ~~~~~~~~~~~------------------~----------~~~~~----~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (732)
........... + ...+. .......+.++++|+|+++|++|.++|++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~ 227 (268)
T d1j1ia_ 148 GMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETA 227 (268)
T ss_dssp HHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred hhHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEeCCCCCCCHHHH
Confidence 00000000000 0 00000 1111233678899999999999999999888
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 668 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 668 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
.++.+.++ ++++++++++||.+ ..++.+++.+.+.+||.+
T Consensus 228 ~~~~~~~~----~~~~~~~~~~gH~~-~~e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 228 YKFLDLID----DSWGYIIPHCGHWA-MIEHPEDFANATLSFLSL 267 (268)
T ss_dssp HHHHHHCT----TEEEEEESSCCSCH-HHHSHHHHHHHHHHHHHH
T ss_pred HHHHHhCC----CCEEEEECCCCCch-HHhCHHHHHHHHHHHHcC
Confidence 88877664 57999999999964 345678889999999875
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=1.9e-17 Score=155.37 Aligned_cols=179 Identities=12% Similarity=0.076 Sum_probs=117.7
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
.-||++||..++.....+..+++.|+++||.|+++|++|.+. ...+|....++.+.. ...++
T Consensus 2 k~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~~~---------------~~~~~~~~~l~~~~~---~~~~~ 63 (186)
T d1uxoa_ 2 KQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQH---TLHEN 63 (186)
T ss_dssp CEEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGG---GCCTT
T ss_pred CEEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCCCc---------------chHHHHHHHHHHHHh---ccCCC
Confidence 369999998555444446778899999999999999986542 124455555544443 34678
Q ss_pred EEEEEcChHHHHHHHHHh-CCCc--ceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEE
Q 004735 576 LCITGGSAGGYTTLAALA-FRDT--FKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPII 652 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~--~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~L 652 (732)
++|+|||+||++++.++. +++. +.+++..++......... ...... ....+.....++.+|+|
T Consensus 64 ~~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~------~~~~~~~~~~~~~~p~l 129 (186)
T d1uxoa_ 64 TYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQ--------MLDEFT------QGSFDHQKIIESAKHRA 129 (186)
T ss_dssp EEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCG--------GGGGGT------CSCCCHHHHHHHEEEEE
T ss_pred cEEEEechhhHHHHHHHHhCCccceeeEEeecccccccchhhh--------hhhhhh------cccccccccccCCCCEE
Confidence 999999999999999988 6654 344444444432211000 000000 00011111223457999
Q ss_pred EEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc--ccHHHHHHHHHHHHH
Q 004735 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA--ENIKFTLEQQMVFFA 711 (732)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~ 711 (732)
++||++|.+||+++++++++.+. .++++++++||..... .......+.+.+||.
T Consensus 130 vi~g~~D~~vp~~~~~~l~~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~ 185 (186)
T d1uxoa_ 130 VIASKDDQIVPFSFSKDLAQQID-----AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFS 185 (186)
T ss_dssp EEEETTCSSSCHHHHHHHHHHTT-----CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHH
T ss_pred EEecCCCCCCCHHHHHHHHHHcC-----CEEEEeCCCCCcCccccCcccHHHHHHHHHHHc
Confidence 99999999999999999988773 4899999999954322 233567777777775
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.71 E-value=2e-17 Score=166.04 Aligned_cols=203 Identities=13% Similarity=0.110 Sum_probs=125.6
Q ss_pred CEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
|.||++||.+.+...+. +......+.++||.|+++|+||.+........ ........+|+.+.++.+ +.+
T Consensus 31 ~~ivllHG~~~~~~~~~~~~~~l~~~~~~g~~v~~~D~~G~G~S~~~~~~---~~~~~~~~~~i~~li~~l------~~~ 101 (283)
T d2rhwa1 31 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMD---EQRGLVNARAVKGLMDAL------DID 101 (283)
T ss_dssp SEEEEECCCSTTCCHHHHHTTTHHHHHHTTCEEEEECCTTSTTSCCCCCS---SCHHHHHHHHHHHHHHHH------TCC
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHHHHCCCEEEEEeCCCCccccccccc---ccccchhhhhcccccccc------ccc
Confidence 78899999754433221 11123456789999999999986543221100 000001133444444433 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH---------HHH---Hh---hc-chhhhhhhhhhc------C-
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---------SML---RA---ET-HKFESRYIDNLV------G- 630 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~---------~~~---~~---~~-~~~~~~~~~~~~------~- 630 (732)
++.++|||+||.+++.++. +|++++++++++|..-. ... .. .. .......+.... .
T Consensus 102 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (283)
T d2rhwa1 102 RAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITE 181 (283)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGCCH
T ss_pred ccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhcccccCcH
Confidence 8999999999999999988 99999999998864210 000 00 00 000000000000 0
Q ss_pred ------------Chh------------hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe
Q 004735 631 ------------SEK------------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 686 (732)
Q Consensus 631 ------------~~~------------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (732)
... .....+....+.++++|+|+++|++|.+++++.+.++.+.++ +++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~i 257 (283)
T d2rhwa1 182 ELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID----DARLHVF 257 (283)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS----SEEEEEE
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcCHHHHHHHHHhCC----CCEEEEE
Confidence 000 011123344567789999999999999999999988877763 5799999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 687 EGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 687 ~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+++||.+ ..++.+++.+.+.+||++
T Consensus 258 ~~~gH~~-~~e~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 258 SKCGHWA-QWEHADEFNRLVIDFLRH 282 (283)
T ss_dssp SSCCSCH-HHHTHHHHHHHHHHHHHH
T ss_pred CCCCCch-HHhCHHHHHHHHHHHHhC
Confidence 9999964 335677888889999875
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.70 E-value=1.4e-16 Score=156.18 Aligned_cols=203 Identities=15% Similarity=0.096 Sum_probs=132.7
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+. ....|..++..|+++||.|+++|+||.|....... .....++....+..+..... ...+
T Consensus 3 ~~vvllHG~~~--~~~~w~~~~~~L~~~g~~vi~~Dl~G~G~S~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (258)
T d1xkla_ 3 KHFVLVHGACH--GGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIE-------ELRTLYDYTLPLMELMESLS-ADEK 72 (258)
T ss_dssp CEEEEECCTTC--CGGGGTTHHHHHHHTTCEEEECCCTTSTTCCCCGG-------GCCSHHHHHHHHHHHHHTSC-SSSC
T ss_pred CcEEEECCCCC--CHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCC-------CCcchHHHHHHHhhhhhccc-cccc
Confidence 67889999844 34567778899999999999999998765432211 11224444444444444422 2468
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-----HHHhh----cch----------------------hhhh
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----MLRAE----THK----------------------FESR 623 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-----~~~~~----~~~----------------------~~~~ 623 (732)
+.++|||+||.+++.++. +|++++.++++++..... ..... ... ....
T Consensus 73 ~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T d1xkla_ 73 VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPK 152 (258)
T ss_dssp EEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCHH
T ss_pred ccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccHH
Confidence 999999999999999988 999999999987653210 00000 000 0000
Q ss_pred hhhhhc-C--C-----------------hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEE
Q 004735 624 YIDNLV-G--S-----------------EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 683 (732)
Q Consensus 624 ~~~~~~-~--~-----------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (732)
...... . . ...+...........+++|+++++|++|.++|++..+.+.+.+. ++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~ 228 (258)
T d1xkla_ 153 FLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIG----VTEA 228 (258)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHC----CSEE
T ss_pred HHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCCHHHHHHHHHHCC----CCEE
Confidence 000000 0 0 01111122233355677999999999999999998888887764 4589
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 684 VEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 684 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
++++++||.. ..+..+++.+.+++|++++
T Consensus 229 ~~i~~~gH~~-~~e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 229 IEIKGADHMA-MLCEPQKLCASLLEIAHKY 257 (258)
T ss_dssp EEETTCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred EEECCCCCch-HHhCHHHHHHHHHHHHHhc
Confidence 9999999964 3466788888899998875
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.70 E-value=1.6e-16 Score=157.74 Aligned_cols=219 Identities=21% Similarity=0.285 Sum_probs=138.0
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~ 544 (732)
+|.+. ||.++++..+ +. .|.||++||++. ....|...++.|+++||.|+++|+||.+.....
T Consensus 2 ~f~~~-dG~~l~y~~~-----------G~-g~~vv~lHG~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~--- 63 (271)
T d1va4a_ 2 TFVAK-DGTQIYFKDW-----------GS-GKPVLFSHGWLL--DADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP--- 63 (271)
T ss_dssp EEECT-TSCEEEEEEE-----------SS-SSEEEEECCTTC--CGGGGHHHHHHHHTTTCEEEEECCTTSTTSCCC---
T ss_pred EEEeE-CCeEEEEEEE-----------cC-CCeEEEECCCCC--CHHHHHHHHHHHHhCCCEEEEEecccccccccc---
Confidence 45666 8999985544 12 256788999854 345577788889999999999999976543211
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHH-h-CCCcceEEEeecCcCCHH-----------
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVADLS----------- 611 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~-~-~p~~~~a~v~~~~~~d~~----------- 611 (732)
......++....+..+.+. ++.+++.++|||+||.+++..+ . +|++++.+++..+.....
T Consensus 64 -----~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~ 136 (271)
T d1va4a_ 64 -----WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVP 136 (271)
T ss_dssp -----SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBC
T ss_pred -----ccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhh
Confidence 1112355555555555544 2456899999999987776554 4 899999999887653210
Q ss_pred --HH---Hhh----cchhhhhhhhhhcC----------------------Ch-------hhhhhcCccccCCCCCCCEEE
Q 004735 612 --ML---RAE----THKFESRYIDNLVG----------------------SE-------KDYYEKSPINFVDKFSCPIIL 653 (732)
Q Consensus 612 --~~---~~~----~~~~~~~~~~~~~~----------------------~~-------~~~~~~sp~~~~~~i~~P~Li 653 (732)
.. ... ...+...+...... .. ..+...+....+.++++|+|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~ 216 (271)
T d1va4a_ 137 LDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLV 216 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEE
T ss_pred hhHHHHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhcccceee
Confidence 00 000 00000000000000 00 011112222345678899999
Q ss_pred EEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 654 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 654 i~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
++|++|.+++++...++.+.+.. .+++++++++||... .++.+++.+.+.+||+|
T Consensus 217 i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 217 IHGDGDQIVPFETTGKVAAELIK---GAELKVYKDAPHGFA-VTHAQQLNEDLLAFLKR 271 (271)
T ss_dssp EEETTCSSSCGGGTHHHHHHHST---TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHTC
T ss_pred cccCCCCCCCHHHHHHHHHHhCC---CCEEEEECCCCCchH-HhCHHHHHHHHHHHHCc
Confidence 99999999999888777665532 468999999999643 35667888888888864
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.70 E-value=4.1e-16 Score=155.01 Aligned_cols=218 Identities=17% Similarity=0.239 Sum_probs=137.2
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~ 544 (732)
+|.+. ||.++++..+ +.. |.||++||.+. ....|...+..|.++||.|+++|+||.+.....
T Consensus 2 ~f~~~-dG~~i~y~~~-----------G~g-~pvvllHG~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~--- 63 (273)
T d1a8sa_ 2 TFTTR-DGTQIYYKDW-----------GSG-QPIVFSHGWPL--NADSWESQMIFLAAQGYRVIAHDRRGHGRSSQP--- 63 (273)
T ss_dssp EEECT-TSCEEEEEEE-----------SCS-SEEEEECCTTC--CGGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC---
T ss_pred EEEee-CCcEEEEEEE-----------CCC-CeEEEECCCCC--CHHHHHHHHHHHHhCCCEEEEEechhcCccccc---
Confidence 57777 9999886544 222 55788999844 345577788889999999999999976543221
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHH-h-CCCcceEEEeecCcCCH------------
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVADL------------ 610 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~-~-~p~~~~a~v~~~~~~d~------------ 610 (732)
. ...+.++..+.+..+++.. +.++..++|||+||.+++.++ . +|++++.++++++....
T Consensus 64 --~---~~~~~~~~~~~~~~~l~~l--~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~ 136 (273)
T d1a8sa_ 64 --W---SGNDMDTYADDLAQLIEHL--DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLP 136 (273)
T ss_dssp --S---SCCSHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBC
T ss_pred --c---ccccccchHHHHHHHHHhc--CccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccch
Confidence 1 1123455555555555542 345789999999886665554 4 89999999888764311
Q ss_pred -HHHHh-------hcchhhhhhhhhh-cC-----------------------Ch-------hhhhhcCccccCCCCCCCE
Q 004735 611 -SMLRA-------ETHKFESRYIDNL-VG-----------------------SE-------KDYYEKSPINFVDKFSCPI 651 (732)
Q Consensus 611 -~~~~~-------~~~~~~~~~~~~~-~~-----------------------~~-------~~~~~~sp~~~~~~i~~P~ 651 (732)
..+.. ............. .. .. ..+...+....++++++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pv 216 (273)
T d1a8sa_ 137 MEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPT 216 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCE
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhhccce
Confidence 00000 0000000000000 00 00 0111222334467889999
Q ss_pred EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 652 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
|+++|++|.++|.+...++.+.+.. ++++++++++||.. ..++.+++.+.+++||+
T Consensus 217 lii~g~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 217 LVVHGDADQVVPIEASGIASAALVK---GSTLKIYSGAPHGL-TDTHKDQLNADLLAFIK 272 (273)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHHST---TCEEEEETTCCSCH-HHHTHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCHHHHHHHHHHhCC---CCEEEEECCCCCch-HHhCHHHHHHHHHHHcC
Confidence 9999999999998877777665532 46899999999964 33567788888888875
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.69 E-value=2.9e-16 Score=160.29 Aligned_cols=222 Identities=15% Similarity=0.049 Sum_probs=136.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
++-.+.+. ||.++++..+-++ ..|.||++||++++...+.. . ..+...||.|+++|.||.|.+...
T Consensus 12 ~~~~i~~~-dg~~i~y~~~G~~----------~g~pvvllHG~~g~~~~~~~--~-~~~l~~~~~Vi~~D~rG~G~S~~~ 77 (313)
T d1azwa_ 12 QQGSLKVD-DRHTLYFEQCGNP----------HGKPVVMLHGGPGGGCNDKM--R-RFHDPAKYRIVLFDQRGSGRSTPH 77 (313)
T ss_dssp EEEEEECS-SSCEEEEEEEECT----------TSEEEEEECSTTTTCCCGGG--G-GGSCTTTEEEEEECCTTSTTSBST
T ss_pred CCCEEEeC-CCcEEEEEEecCC----------CCCEEEEECCCCCCccchHH--H-hHHhhcCCEEEEEeccccCCCCcc
Confidence 66677777 8999987766332 13567889998755433332 2 233467999999999976543211
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc---
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET--- 617 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~--- 617 (732)
.. .....++++.+.+..++++. ..+++.|+|||+||.+++.++. +|++++.+++.++...........
T Consensus 78 ---~~---~~~~~~~~~~~dl~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~~~~~~~~~~~ 149 (313)
T d1azwa_ 78 ---AD---LVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFLLRRFELEWFYQE 149 (313)
T ss_dssp ---TC---CTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTS
T ss_pred ---cc---ccchhHHHHHHHHHHHHHhh--ccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccccccccchhhhhhc
Confidence 11 11233566666666666663 3468999999999999999998 999999999988754322100000
Q ss_pred ----------chh------------hhhhhhhhc------------------------C-Chhhhhhc------------
Q 004735 618 ----------HKF------------ESRYIDNLV------------------------G-SEKDYYEK------------ 638 (732)
Q Consensus 618 ----------~~~------------~~~~~~~~~------------------------~-~~~~~~~~------------ 638 (732)
..+ .......+. . ........
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (313)
T d1azwa_ 150 GASRLFPDAWEHYLNAIPPVERADLMSAFHRRLTSDDEATRLAAAKAWSVWEGATSFLHVDEDFVTGHEDAHFALAFARI 229 (313)
T ss_dssp SHHHHCHHHHHHHHHTSCGGGTTSHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHTCHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHhhhhhhhhhhhhhhhhhhcCccHHHHHHHHHhhhhccccccccccchhhhcccchhHHHHHHhHH
Confidence 000 000000000 0 00000000
Q ss_pred -------------Cc---cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHH
Q 004735 639 -------------SP---INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFT 702 (732)
Q Consensus 639 -------------sp---~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~ 702 (732)
.+ ......+++|+|+++|++|.++|++.+.++.+.+. +.++++++++||....++...++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~l~~~~p----~a~~~~i~~aGH~~~ep~~~~~l 305 (313)
T d1azwa_ 230 ENHYFVNGGFFEVEDQLLRDAHRIADIPGVIVHGRYDVVCPLQSAWDLHKAWP----KAQLQISPASGHSAFEPENVDAL 305 (313)
T ss_dssp HHHHHHTGGGCSSTTHHHHTGGGGTTCCEEEEEETTCSSSCHHHHHHHHHHCT----TSEEEEETTCCSSTTSHHHHHHH
T ss_pred HHHHHhhccccccchhhhHhhhhcCCCCEEEEEECCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCCCCCchHHHHH
Confidence 00 01134567899999999999999999998888775 45899999999976544444444
Q ss_pred HHHHHHH
Q 004735 703 LEQQMVF 709 (732)
Q Consensus 703 ~~~~~~f 709 (732)
++.+.+|
T Consensus 306 i~a~~~f 312 (313)
T d1azwa_ 306 VRATDGF 312 (313)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.69 E-value=8.2e-17 Score=164.05 Aligned_cols=220 Identities=14% Similarity=0.110 Sum_probs=139.4
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC
Q 004735 470 VPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549 (732)
Q Consensus 470 ~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~ 549 (732)
.+|.++++.-.-+. ...|+||++||.+.. ...|......|+++||.|+++|.||.|....... .
T Consensus 31 ~~g~~~~y~~~G~~---------~~~p~llllHG~~~~--~~~~~~~~~~l~~~~~~vi~~Dl~G~G~S~~~~~---~-- 94 (310)
T d1b6ga_ 31 YPGLRAHYLDEGNS---------DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVD---E-- 94 (310)
T ss_dssp CTTCEEEEEEEECT---------TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTSTTSCEESC---G--
T ss_pred CCCEEEEEEEecCC---------CCCCEEEEECCCCCc--hHHHHHHHHHhhccCceEEEeeecCccccccccc---c--
Confidence 37889986555442 345899999998543 4556667788999999999999997665432110 0
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-----HHHhhc---ch-
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----MLRAET---HK- 619 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-----~~~~~~---~~- 619 (732)
.....++..+.+..+++.. +.+++.|+|||+||.+++.++. +|++++++|++++..... .+.... ..
T Consensus 95 -~~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (310)
T d1b6ga_ 95 -EDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADG 171 (310)
T ss_dssp -GGCCHHHHHHHHHHHHHHH--TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTT
T ss_pred -ccccccccccchhhhhhhc--cccccccccceecccccccchhhhccccceEEEEcCccCCCcccchhHHHHhhcchhh
Confidence 1123566666666665542 3468999999999999999988 999999999987643110 000000 00
Q ss_pred -------------h-hhhhhhhhcC--Ch---hhhhh----------------cC--------------ccccCCCCCCC
Q 004735 620 -------------F-ESRYIDNLVG--SE---KDYYE----------------KS--------------PINFVDKFSCP 650 (732)
Q Consensus 620 -------------~-~~~~~~~~~~--~~---~~~~~----------------~s--------------p~~~~~~i~~P 650 (732)
. ...+...... .. ..|.. .. ......++++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 251 (310)
T d1b6ga_ 172 FTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQ 251 (310)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSE
T ss_pred hhhhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhhhhhHHhhcccCCC
Confidence 0 0000000000 00 00000 00 00113467899
Q ss_pred EEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 651 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 651 ~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+|+++|++|.+++++....+.+.+... .++++++++||.. ..+..+.+.+.+.+|+++
T Consensus 252 ~l~i~G~~D~~~~~~~~~~~~~~~~~~---~~~~~i~~~GH~~-~~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 252 TFMAIGMKDKLLGPDVMYPMKALINGC---PEPLEIADAGHFV-QEFGEQVAREALKHFAET 309 (310)
T ss_dssp EEEEEETTCSSSSHHHHHHHHHHSTTC---CCCEEETTCCSCG-GGGHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCC---ccEEEECCCcCch-hhhCHHHHHHHHHHHHhC
Confidence 999999999999998887777665432 3678899999954 456666777777787763
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.69 E-value=6.6e-17 Score=153.89 Aligned_cols=182 Identities=18% Similarity=0.102 Sum_probs=125.0
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCC-CChhhHHhhccCCCcccHHHHHHHHHHHHh---
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG-YGREFRERLLGRWGIVDVNDCCSCATFLVG--- 567 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g-~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~--- 567 (732)
.+..|+||++||++.. ...+....+.++ .++.|+.++.+...+ ...... ....+..+.+|+...++.+..
T Consensus 14 ~~~~P~vi~lHG~G~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 87 (203)
T d2r8ba1 14 VAGAPLFVLLHGTGGD--ENQFFDFGARLL-PQATILSPVGDVSEHGAARFFR---RTGEGVYDMVDLERATGKMADFIK 87 (203)
T ss_dssp CTTSCEEEEECCTTCC--HHHHHHHHHHHS-TTSEEEEECCSEEETTEEESSC---BCGGGCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCeEEEecccccccccccccc---ccCccccchhHHHHHHHHHHHHHH
Confidence 4568999999997433 233444555554 478888887542211 111110 111112233444333333221
Q ss_pred --cCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccC
Q 004735 568 --SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFV 644 (732)
Q Consensus 568 --~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 644 (732)
...++.++++++|+|+||.+++.++. +|+.+.++++.+|...... ....
T Consensus 88 ~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~----------------------------~~~~ 139 (203)
T d2r8ba1 88 ANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP----------------------------KISP 139 (203)
T ss_dssp HHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC----------------------------CCCC
T ss_pred HhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecccccccc----------------------------cccc
Confidence 12357889999999999999999988 9999999999998753210 0112
Q ss_pred CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 645 DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 645 ~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
.....|++++||++|++||+++++++++.|++.|.+++++++++ ||++. .+.++.+.+||.++
T Consensus 140 ~~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~-----~~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 140 AKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIR-----SGEIDAVRGFLAAY 202 (203)
T ss_dssp CCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEEEEESS-CSSCC-----HHHHHHHHHHHGGG
T ss_pred ccccchhhccccCCCCcccHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHHhc
Confidence 23457999999999999999999999999999999999999987 79875 24567788998764
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.69 E-value=5.9e-16 Score=154.24 Aligned_cols=202 Identities=14% Similarity=0.144 Sum_probs=122.8
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.+ ...|...+..|+++||.|+++|+||.+..... . .....++..+.+..++++. +.+
T Consensus 23 G~~ivllHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~-----~---~~~~~~~~~~dl~~~l~~l--~~~ 90 (277)
T d1brta_ 23 GQPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGFGQSSQP-----T---TGYDYDTFAADLNTVLETL--DLQ 90 (277)
T ss_dssp SSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-----S---SCCSHHHHHHHHHHHHHHH--TCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeCCCCCccccc-----c---cccchhhhhhhhhhhhhcc--Ccc
Confidence 3668899998543 45567778889999999999999976543211 1 1123444444444444432 346
Q ss_pred cEEEEEcChHHHH-HHHHHh-CCCcceEEEeecCcCCHHH-----------------HHhh----cchhhhhhhhhhcC-
Q 004735 575 RLCITGGSAGGYT-TLAALA-FRDTFKAGASLYGVADLSM-----------------LRAE----THKFESRYIDNLVG- 630 (732)
Q Consensus 575 ri~i~G~S~GG~~-a~~~~~-~p~~~~a~v~~~~~~d~~~-----------------~~~~----~~~~~~~~~~~~~~- 630 (732)
++.++|||+||.+ +..++. +|++++++|++++...... +... ...+...+......
T Consensus 91 ~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (277)
T d1brta_ 91 DAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNL 170 (277)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTH
T ss_pred cccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhcccccccc
Confidence 8999999999755 555555 8999999999876431100 0000 00000000000000
Q ss_pred -----------------------Ch-hhhh-----hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCE
Q 004735 631 -----------------------SE-KDYY-----EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 681 (732)
Q Consensus 631 -----------------------~~-~~~~-----~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (732)
.. ..+. ..+....+.++++|+++++|++|.+++++...+..... ..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~---~~~~ 247 (277)
T d1brta_ 171 DENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKA---LPSA 247 (277)
T ss_dssp HHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHH---CTTS
T ss_pred chhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcCHHHHHHHHHHh---CCCC
Confidence 00 0000 01112235667899999999999999987654433322 2356
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 682 ALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 682 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
++++++++||.. ..+..+++.+.+.+||+|
T Consensus 248 ~~~~i~~~gH~~-~~e~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 248 EYVEVEGAPHGL-LWTHAEEVNTALLAFLAK 277 (277)
T ss_dssp EEEEETTCCTTH-HHHTHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCch-HHhCHHHHHHHHHHHHCc
Confidence 899999999964 346777888999999874
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.68 E-value=8.1e-16 Score=154.59 Aligned_cols=222 Identities=13% Similarity=0.073 Sum_probs=135.8
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+...++. +|.++++... + ..|.||++||.+.+ ...|...+..|++ +|.|+++|+||.+.....
T Consensus 9 ~~~~~~~--~~~~l~y~~~-----------G-~gp~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~ 71 (293)
T d1ehya_ 9 KHYEVQL--PDVKIHYVRE-----------G-AGPTLLLLHGWPGF--WWEWSKVIGPLAE-HYDVIVPDLRGFGDSEKP 71 (293)
T ss_dssp CEEEEEC--SSCEEEEEEE-----------E-CSSEEEEECCSSCC--GGGGHHHHHHHHT-TSEEEEECCTTSTTSCCC
T ss_pred cceEEEE--CCEEEEEEEE-----------C-CCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCcccCCccc
Confidence 4556666 5778875543 1 13789999998543 4566777777754 899999999987643221
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH---------
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--------- 611 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~--------- 611 (732)
.. ........++....+..++++. +.+++.++|||+||.+++.++. +|+++.+++++++.....
T Consensus 72 ~~----~~~~~~~~~~~a~~~~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 145 (293)
T d1ehya_ 72 DL----NDLSKYSLDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGH 145 (293)
T ss_dssp CT----TCGGGGCHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC---------
T ss_pred cc----cccccccchhhhhHHHhhhhhc--CccccccccccccccchhcccccCccccceeeeeeccCccccchhhhhhh
Confidence 10 0111123556666666565553 3468999999999999999988 999999999998753100
Q ss_pred ------HHHh----------hcchhhhhhhhhhc----C-----Ch--------------------hhhhh-cCcc----
Q 004735 612 ------MLRA----------ETHKFESRYIDNLV----G-----SE--------------------KDYYE-KSPI---- 641 (732)
Q Consensus 612 ------~~~~----------~~~~~~~~~~~~~~----~-----~~--------------------~~~~~-~sp~---- 641 (732)
.... ........++...+ . .. ..|.. ..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (293)
T d1ehya_ 146 VHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALW 225 (293)
T ss_dssp --CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCC
T ss_pred hhhhhhhhhhccchhhhhhccchhHHHHHHHHhhhhcccccccccHHHHHhhhhccccchhhhhhhhhhhhccccchhhh
Confidence 0000 00000001111000 0 00 00000 0000
Q ss_pred --ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 642 --NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 642 --~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
.....+++|+|+++|++|.+++.+...++.+.+. .++++++++++||.. ..+..+.+.+.+.+||
T Consensus 226 ~~~~~~~~~~Pvlii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~-~~e~Pe~~~~~I~~Ff 292 (293)
T d1ehya_ 226 TDLDHTMSDLPVTMIWGLGDTCVPYAPLIEFVPKYY---SNYTMETIEDCGHFL-MVEKPEIAIDRIKTAF 292 (293)
T ss_dssp CTGGGSCBCSCEEEEEECCSSCCTTHHHHHHHHHHB---SSEEEEEETTCCSCH-HHHCHHHHHHHHHHHC
T ss_pred hhhhhhccCCceEEEEeCCCCCcCHHHHHHHHHHhC---CCCEEEEECCCCCch-HHHCHHHHHHHHHHhh
Confidence 1123467899999999999999877766555442 368999999999953 3355667777777775
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.68 E-value=1.2e-16 Score=160.64 Aligned_cols=214 Identities=14% Similarity=0.132 Sum_probs=138.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+-+++ .|.||++||++.+. ..|...++.|+ .||.|+++|+||.+..... .
T Consensus 15 ~g~~i~y~~~G~~~----------~p~lvllHG~~~~~--~~~~~~~~~L~-~~~~vi~~d~~G~G~S~~~-----~--- 73 (291)
T d1bn7a_ 15 LGERMHYVDVGPRD----------GTPVLFLHGNPTSS--YLWRNIIPHVA-PSHRCIAPDLIGMGKSDKP-----D--- 73 (291)
T ss_dssp TTEEEEEEEESCSS----------SSCEEEECCTTCCG--GGGTTTHHHHT-TTSCEEEECCTTSTTSCCC-----S---
T ss_pred CCEEEEEEEeCCCC----------CCeEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEEeCCCCcccccc-----c---
Confidence 79999977765432 36688999985543 44566677774 5999999999976553221 1
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH------Hh--------
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML------RA-------- 615 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~------~~-------- 615 (732)
.....++..+.+..++++. +.+++.++|||+||.+++.++. +|+++++++++.+....... ..
T Consensus 74 ~~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (291)
T d1bn7a_ 74 LDYFFDDHVRYLDAFIEAL--GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRT 151 (291)
T ss_dssp CCCCHHHHHHHHHHHHHHT--TCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCHHHHHHHHHHTS
T ss_pred cccchhHHHHHHhhhhhhh--ccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhhhhhhHHHHHhh
Confidence 1133566666666666653 3468999999999999999888 99999999987654321000 00
Q ss_pred ---------hcchhhhhhhhhhcC---Ch---hhhh-----------------hc--------------CccccCCCCCC
Q 004735 616 ---------ETHKFESRYIDNLVG---SE---KDYY-----------------EK--------------SPINFVDKFSC 649 (732)
Q Consensus 616 ---------~~~~~~~~~~~~~~~---~~---~~~~-----------------~~--------------sp~~~~~~i~~ 649 (732)
....+....+..... .. ..+. .. .....+.++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 231 (291)
T d1bn7a_ 152 ADVGRELIIDQNAFIEGVLPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMNWLHQSPV 231 (291)
T ss_dssp TTHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCS
T ss_pred hhhHHHhhhhhhhhHHhhhhhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhcCCC
Confidence 000000000000000 00 0000 00 00112456789
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
|+|+++|++|.++++..+.++.+.++ +.++++++++||.. ..+..+++.+.+.+||+.
T Consensus 232 P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~-~~e~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 232 PKLLFWGTPGVLIPPAEAARLAESLP----NCKTVDIGPGLHYL-QEDNPDLIGSEIARWLPG 289 (291)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHST----TEEEEEEEEESSCG-GGTCHHHHHHHHHHHSGG
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHCC----CCEEEEECCCCCch-HHhCHHHHHHHHHHHHHh
Confidence 99999999999999998888877764 56899999999954 446667788888888753
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.68 E-value=3.8e-16 Score=150.29 Aligned_cols=190 Identities=17% Similarity=0.141 Sum_probs=123.5
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHC--CCEEEEEcCCCC-----CCC-ChhhHHhhccC-CCcccHHHHHHH--
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGS-----TGY-GREFRERLLGR-WGIVDVNDCCSC-- 561 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rG~-----~g~-g~~~~~~~~~~-~~~~~~~D~~~~-- 561 (732)
+..|+||++||.+ .....+....+.+... ++.+++++-+.. +++ +..|....... ....+.+++.+.
T Consensus 12 ~~~~~Vi~lHG~G--~~~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (218)
T d1auoa_ 12 PADACVIWLHGLG--ADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAK 89 (218)
T ss_dssp CCSEEEEEECCTT--CCTTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHH
T ss_pred CCCeEEEEEcCCC--CChhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHH
Confidence 4568999999973 3345566667777654 455666542210 010 11111111100 011223333332
Q ss_pred -HHHHH---hcCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhh
Q 004735 562 -ATFLV---GSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY 635 (732)
Q Consensus 562 -i~~l~---~~~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (732)
+..++ .+..+|.+|++++|+|+||++++.++. .+..+.+++++++....... ..
T Consensus 90 ~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~-------------~~------- 149 (218)
T d1auoa_ 90 MVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGD-------------EL------- 149 (218)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCT-------------TC-------
T ss_pred HHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccccc-------------cc-------
Confidence 23222 235689999999999999999988764 56789999999886421100 00
Q ss_pred hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 636 YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 636 ~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.......+.|+|++||++|.+||++.++++++.|++.|.+++++.|+ .+|.+. .+.++.+.+||.+.|+
T Consensus 150 -----~~~~~~~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 150 -----ELSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEIHDIGAWLAARLG 218 (218)
T ss_dssp -----CCCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHHHHHHHHHHHHHC
T ss_pred -----ccchhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHHHHHHHHHHHHhcC
Confidence 00001125799999999999999999999999999999999999997 689765 3567889999999885
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.67 E-value=3e-16 Score=153.88 Aligned_cols=202 Identities=12% Similarity=0.048 Sum_probs=128.2
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcE
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 576 (732)
-.|++||.+.+ ...|..++..|+++||.|+++|+||.|....... .....++..+.+..++.+. ...+++
T Consensus 4 ~~vliHG~~~~--~~~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-------~~~~~~~~~~~l~~~~~~~-~~~~~~ 73 (256)
T d3c70a1 4 HFVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAASGVDPRQIE-------EIGSFDEYSEPLLTFLEAL-PPGEKV 73 (256)
T ss_dssp EEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHTHHHHHHHHHS-CTTCCE
T ss_pred cEEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCCCC-------CCCCHHHHHHHhhhhhhhh-ccccce
Confidence 36889998443 4567778899999999999999998765432211 1123455555554443332 235789
Q ss_pred EEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-----HHHhh----cch--------------------hhhhhhh
Q 004735 577 CITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----MLRAE----THK--------------------FESRYID 626 (732)
Q Consensus 577 ~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-----~~~~~----~~~--------------------~~~~~~~ 626 (732)
.|+|||+||.+++.++. +|++++++|++++..... ..... ... .......
T Consensus 74 ~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
T d3c70a1 74 ILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLR 153 (256)
T ss_dssp EEEEETTHHHHHHHHHHHHGGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHHH
T ss_pred eecccchHHHHHHHHhhcCchhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhhhhhh
Confidence 99999999999999988 999999999887653111 00000 000 0000000
Q ss_pred hhc-CC-------------------hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe
Q 004735 627 NLV-GS-------------------EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 686 (732)
Q Consensus 627 ~~~-~~-------------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (732)
... .. ...............+++|+++++|++|..++++..+++.+.+. +.+++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p----~~~~~~i 229 (256)
T d3c70a1 154 ENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYK----PDKVYKV 229 (256)
T ss_dssp HHTSTTSCHHHHHHHHHHCCCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSC----CSEEEEC
T ss_pred hhhhhhcchhhHHHhhhhhhhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCCHHHHHHHHHHCC----CCEEEEE
Confidence 000 00 00111111122334457899999999999999988777766553 4589999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 687 EGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 687 ~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
+++||.. .-+..+++.+.+.+|++++
T Consensus 230 ~~agH~~-~~e~P~~~~~~l~~~~~~~ 255 (256)
T d3c70a1 230 EGGDHKL-QLTKTKEIAEILQEVADTY 255 (256)
T ss_dssp CSCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred CCCCCch-HHhCHHHHHHHHHHHHHhc
Confidence 9999964 3356677888888887764
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.4e-14 Score=155.42 Aligned_cols=310 Identities=14% Similarity=0.142 Sum_probs=187.4
Q ss_pred cCceEEcC-CCcEEEEeecC-----CCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC
Q 004735 91 LGGTAVDG-HGRLIWLESRP-----TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~ 164 (732)
.....+|| ++.+++..... .-.+ .++.++..+| ..+.|.+..... ..+ .-..|++++..|+|+. +
T Consensus 63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~--~~~i~d~~~~-~~~~l~~~~~~~-~~l---~~~~wSPDG~~iafv~--~ 133 (465)
T d1xfda1 63 AIRYEISPDREYALFSYNVEPIYQHSYTG--YYVLSKIPHG-DPQSLDPPEVSN-AKL---QYAGWGPKGQQLIFIF--E 133 (465)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCS--EEEEEESSSC-CCEECCCTTCCS-CCC---SBCCBCSSTTCEEEEE--T
T ss_pred cceeEECCCCCeEEEEEcccceeEeeccc--cEEEEEccCC-ceeeccCccCCc-ccc---ceeeeccCCceEEEEe--c
Confidence 45678999 88877654211 1123 3455555544 555565432111 111 1245777888999996 5
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeE---------------eeceeecCCCCEEEEEEeccCCC--------------
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVS---------------YADGIFDPRFNRYVTVREDRRQD-------------- 215 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~---------------~~~~~~spdG~~l~~~~~~~~~~-------------- 215 (732)
++||+++..+ +...++|......... ...+.|||||++|+|.+-+...-
T Consensus 134 ~nl~~~~~~~--~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p 211 (465)
T d1xfda1 134 NNIYYCAHVG--KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP 211 (465)
T ss_dssp TEEEEESSSS--SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred ceEEEEecCC--CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccc
Confidence 6799999987 7778888653221111 12345999999999987543210
Q ss_pred -----------CCCceeEEEEEEcCCCCccccEEcccC------CC-ceeccccCCCCCeEEEEeccCCCCCCCccEEEE
Q 004735 216 -----------ALNSTTEIVAIALNGQNIQEPKVLVSG------SD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV 277 (732)
Q Consensus 216 -----------~~~~~~~l~~~d~~~~~~~~~~~lt~~------~~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v 277 (732)
.......|+++|++++. .+.+... .+ ....+.|+||++.+ +...++.. +...|++
T Consensus 212 ~~~~~~Yp~~G~~np~~~l~v~d~~~~~---~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~-~~~~nR~q---~~~~i~~ 284 (465)
T d1xfda1 212 TVKPYHYPKAGSENPSISLHVIGLNGPT---HDLEMMPPDDPRMREYYITMVKWATSTKVA-VTWLNRAQ---NVSILTL 284 (465)
T ss_dssp CCEEEECCBTTSCCCEEEEEEEESSSSC---CCEECCCCCCGGGSSEEEEEEEESSSSEEE-EEEEETTS---CEEEEEE
T ss_pred eeeeeeccccCCCCCceeEEEEecCCCc---EEEEEeccCcCccccceeeeeEEcCCCeEE-EEEEcccc---ccceEEE
Confidence 01234689999998876 4332211 11 23457899998744 44435443 4677999
Q ss_pred EEecCCCceeeeEEecCCCCCccc-cCcCceeCCCCc-EEEEE--eccCCeeeEEEEec-------cCCeEEEecccccc
Q 004735 278 GYISENGDVYKRVCVAGFDPTIVE-SPTEPKWSSKGE-LFFVT--DRKNGFWNLHKWIE-------SNNEVLAIYSLDAE 346 (732)
Q Consensus 278 ~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~~wspDg~-l~~~~--~~~~g~~~l~~~d~-------~~g~~~~l~~~~~~ 346 (732)
+|.. +|+.+.+. .+....|.. ....|.|++||+ ++|+. .. .|+.++|.+.+ .++..++||.++++
T Consensus 285 ~d~~-tg~~~~~~--~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~-~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~ 360 (465)
T d1xfda1 285 CDAT-TGVCTKKH--EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ-GGRGKFYHITVSSSQPNSSNDNIQSITSGDWD 360 (465)
T ss_dssp EETT-TCCEEEEE--EEECSSCCCCCCCCCEECTTSCSEEEEEEECC-SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC
T ss_pred EcCC-CCcEEEEE--EEcCCceEeccCCceeEccCCCeeEEEEeeee-cccCceEEEEeccccccCCCceeEEeccCCce
Confidence 9998 78764333 222223332 235789999999 77653 33 56667776643 34456788877665
Q ss_pred cCCC-ceeecccceeeeeecCCCCEEEEEEEEC--CEEEEEEEECCCCce-EEeccC---CCceEEe--eEeCCEEEEEE
Q 004735 347 FSRP-LWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGHSL-SLLDIP---FTDIDNI--TLGNDCLFVEG 417 (732)
Q Consensus 347 ~~~~-~w~~~~~~~~~~~~~~~~~~l~~~s~~~--g~~~ly~~~~~~~~~-~~lt~~---~~~v~~~--~~~~~~~~~~~ 417 (732)
+... .|.. +++.|||++.+. +..|||+++++++.. ++||.. ......+ +.+++.++..+
T Consensus 361 V~~i~~~d~------------~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~ 428 (465)
T d1xfda1 361 VTKILAYDE------------KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (465)
T ss_dssp EEEEEEEET------------TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEEEEEEcC------------CCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence 5432 2322 788999998754 468999999998754 455532 1222222 56667777777
Q ss_pred eCCCCCcEEEEEEcCCCc
Q 004735 418 ASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 418 ~~~~~~~~ly~~dl~~~~ 435 (732)
++++.|. +.+++..+++
T Consensus 429 s~~~~P~-~~~~~~~~~~ 445 (465)
T d1xfda1 429 EGPGVPM-VTVHNTTDKK 445 (465)
T ss_dssp CSSSSCC-EEEEETTTCC
T ss_pred ecCCCCe-EEEEECCCCC
Confidence 8877665 6666666555
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.4e-16 Score=157.30 Aligned_cols=197 Identities=13% Similarity=0.095 Sum_probs=123.6
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
+..|.||++||.+.. ...|...+..|+ .||.|+++|+||.|... ..+..++.|+.+ .+... .
T Consensus 9 ~g~~~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~D~~G~G~S~---------~~~~~~~~d~~~---~~~~~---~ 70 (256)
T d1m33a_ 9 QGNVHLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPGFGRSR---------GFGALSLADMAE---AVLQQ---A 70 (256)
T ss_dssp CCSSEEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTTSTTCC---------SCCCCCHHHHHH---HHHTT---S
T ss_pred CCCCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEeCCCCCCcc---------cccccccccccc---ccccc---c
Confidence 344678899998543 345666777775 68999999999765432 112233445443 33333 2
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-----------HH---Hhhcc----hhhhhhhhh-hcC--
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----------ML---RAETH----KFESRYIDN-LVG-- 630 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-----------~~---~~~~~----~~~~~~~~~-~~~-- 630 (732)
.+++.++|||+||.+++.++. +|+++++++++.+..... .. ..... .....+... ...
T Consensus 71 ~~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (256)
T d1m33a_ 71 PDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTE 150 (256)
T ss_dssp CSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTST
T ss_pred ccceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhcccc
Confidence 468999999999999999988 999999988876432110 00 00000 000000000 000
Q ss_pred -------------------Ch-------hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEE
Q 004735 631 -------------------SE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684 (732)
Q Consensus 631 -------------------~~-------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (732)
.. ..+...+....++++++|+|+++|++|.++|++.+.++.+.+ .+.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~l~~~~----~~~~~~ 226 (256)
T d1m33a_ 151 TARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW----PHSESY 226 (256)
T ss_dssp THHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTC----TTCEEE
T ss_pred chhhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCCHHHHHHHHHHC----CCCEEE
Confidence 00 111122333456778999999999999999988776665444 356899
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 685 EYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 685 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+++++||.. ..++.+++.+.+.+|+++
T Consensus 227 ~i~~~gH~~-~~e~p~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 227 IFAKAAHAP-FISHPAEFCHLLVALKQR 253 (256)
T ss_dssp EETTCCSCH-HHHSHHHHHHHHHHHHTT
T ss_pred EECCCCCch-HHHCHHHHHHHHHHHHHH
Confidence 999999954 345677888888888764
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=3.5e-15 Score=148.11 Aligned_cols=233 Identities=12% Similarity=0.096 Sum_probs=150.5
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc---HHHHHHHHCCCEEEEEcCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~---~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
+.|.++++++..|+.++..++.|. .|+|+++||.+.+.....|. ...+.+..+++.|+.||-.. .
T Consensus 3 ~~e~~~v~s~~~~r~~~~~v~~~~-----------~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~~-~ 70 (267)
T d1r88a_ 3 PYENLMVPSPSMGRDIPVAFLAGG-----------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGA-Y 70 (267)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCS-----------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCT-T
T ss_pred ceEEEEEecccCCceeeEEEECCC-----------CCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCCC-C
Confidence 467889988767888998887553 38999999964433332332 25567778899999998421 1
Q ss_pred CCChhhHHhhccCCCcccHHHH--HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH
Q 004735 537 GYGREFRERLLGRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 613 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~--~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~ 613 (732)
.+...+... +....++. .+.+.++.+++.+|++|++|.|+||||++|+.++. +|++|+++++++|..++...
T Consensus 71 ~~y~~~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~ 145 (267)
T d1r88a_ 71 SMYTNWEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNT 145 (267)
T ss_dssp STTSBCSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSH
T ss_pred cCCcccccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCc
Confidence 221221111 11122222 24677888888899999999999999999999999 99999999999998875432
Q ss_pred Hhhcch--hhh----hhhhhhcC--ChhhhhhcCccccCCCC---CCCEEEEEeCCCCccCh-----------HHHHHHH
Q 004735 614 RAETHK--FES----RYIDNLVG--SEKDYYEKSPINFVDKF---SCPIILFQGLEDKVVPP-----------DQARKIY 671 (732)
Q Consensus 614 ~~~~~~--~~~----~~~~~~~~--~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~~v~~-----------~~~~~~~ 671 (732)
...... ... ......++ +...+.+.+|...++++ ..++++.+|.+|..+.. .....+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
T d1r88a_ 146 TTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFY 225 (267)
T ss_dssp HHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHH
T ss_pred cchhhhhhHHhhhcCCcHhhccCCcchHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHHHH
Confidence 211100 000 00111122 23455667777665543 36788889998865432 3456677
Q ss_pred HHHHhCC-CCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 672 KALKENG-LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 672 ~~l~~~g-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+.+++.+ .++++...++++|.+ ..+.+.+..++..+..
T Consensus 226 ~~l~~~~g~~~~~~~~~~G~H~W---~~W~~~L~~~~p~~~~ 264 (267)
T d1r88a_ 226 NQYRSVGGHNGHFDFPASGDNGW---GSWAPQLGAMSGDIVG 264 (267)
T ss_dssp HHHHHTTCCSEEEECCSSCCSSH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcEEEEEcCCCeECh---HHHHHHHHHHHHHHHH
Confidence 7887764 678888888899975 2445555555544443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.63 E-value=3.1e-15 Score=149.45 Aligned_cols=213 Identities=10% Similarity=0.064 Sum_probs=135.0
Q ss_pred eeecCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 196 GIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 196 ~~~spd--G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
..+||| |++|+|++. .+||++|+++++ .++||.+.+....|+|||||++|||++...... ...
T Consensus 4 ~~~sPdi~G~~v~f~~~----------~dl~~~d~~~g~---~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~--~~~ 68 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC----------DDLWEHDLKSGS---TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSL--NTA 68 (281)
T ss_dssp CCEEEEEETTEEEEEET----------TEEEEEETTTCC---EEEEECSSSEEEEEEECTTSSEEEEEEEESTTC--CEE
T ss_pred cccCCCCCCCEEEEEeC----------CcEEEEECCCCC---EEEEecCCCcccCEEECCCCCEEEEEEeeCCCC--Cce
Confidence 357999 999999975 589999999999 999999888889999999999999998654331 356
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc--CCeeeEEEEeccCCeEEEecccccccCCC
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK--NGFWNLHKWIESNNEVLAIYSLDAEFSRP 350 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~--~g~~~l~~~d~~~g~~~~l~~~~~~~~~~ 350 (732)
+||++++. +|+.++++...............+.|+|||+ |+|..... .....++.++.++++.+...... ..+
T Consensus 69 ~i~~~~~~-~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 144 (281)
T d1k32a2 69 DLYFYNGE-NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP---ATH 144 (281)
T ss_dssp EEEEEETT-TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS---CSE
T ss_pred EEEEEEec-CCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCc---cce
Confidence 79999998 7776444322111000003345678999999 77765541 12345677888887776654321 123
Q ss_pred ceeecccceeeeeecCCCCEEEEEEEEC---------CEEEEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCC
Q 004735 351 LWVFGINSYEIIQSHGEKNLIACSYRQN---------GRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGV 421 (732)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~l~~~s~~~---------g~~~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~ 421 (732)
.|.+ +++.+++..... +...........+....++............++.+ +......
T Consensus 145 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 211 (281)
T d1k32a2 145 ILFA------------DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRI-YFITDID 211 (281)
T ss_dssp EEEE------------TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEE-EEEECTT
T ss_pred eeec------------CCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecccc-ceecccc
Confidence 3333 555544443221 11112222223444555554433333333334444 4445566
Q ss_pred CCcEEEEEEcCCCcceeee
Q 004735 422 EPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 422 ~~~~ly~~dl~~~~~~~lt 440 (732)
...+||++|+++++.++||
T Consensus 212 ~~~~l~~~d~~g~~~~~lt 230 (281)
T d1k32a2 212 GFGQIYSTDLDGKDLRKHT 230 (281)
T ss_dssp SSCEEEEEETTSCSCEECC
T ss_pred cccceEEEeCCCCceEEee
Confidence 7788999999999988776
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.63 E-value=7.8e-16 Score=153.57 Aligned_cols=200 Identities=19% Similarity=0.217 Sum_probs=121.1
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+. ....|...+..+.++||.|+++|+||.+..... .. ...+++..+.+..++++. +.++
T Consensus 24 ~~illlHG~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~-----~~---~~~~~~~~~di~~~i~~l--~~~~ 91 (279)
T d1hkha_ 24 QPVVLIHGYPL--DGHSWERQTRELLAQGYRVITYDRRGFGGSSKV-----NT---GYDYDTFAADLHTVLETL--DLRD 91 (279)
T ss_dssp EEEEEECCTTC--CGGGGHHHHHHHHHTTEEEEEECCTTSTTSCCC-----SS---CCSHHHHHHHHHHHHHHH--TCCS
T ss_pred CeEEEECCCCC--CHHHHHHHHHHHHHCCCEEEEEechhhCCcccc-----cc---ccchhhhhhhhhhhhhhc--CcCc
Confidence 67899999844 345667778888899999999999987654221 11 123455554444444442 3468
Q ss_pred EEEEEcChHHH-HHHHHHh-CCCcceEEEeecCcCCHHH------------HHhh--------cchhhhhhhhh------
Q 004735 576 LCITGGSAGGY-TTLAALA-FRDTFKAGASLYGVADLSM------------LRAE--------THKFESRYIDN------ 627 (732)
Q Consensus 576 i~i~G~S~GG~-~a~~~~~-~p~~~~a~v~~~~~~d~~~------------~~~~--------~~~~~~~~~~~------ 627 (732)
+.|+|||+||. +++.++. +|+++++++++++...... .... ...+...+...
T Consensus 92 ~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (279)
T d1hkha_ 92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDE 171 (279)
T ss_dssp EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHH
T ss_pred cccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccch
Confidence 99999999974 5555555 8999999998876431100 0000 00000000000
Q ss_pred hcC---Ch----------------hhhhh--------cCccccCCCCCCCEEEEEeCCCCccChHH-HHHHHHHHHhCCC
Q 004735 628 LVG---SE----------------KDYYE--------KSPINFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGL 679 (732)
Q Consensus 628 ~~~---~~----------------~~~~~--------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g~ 679 (732)
... .. ..+.. ...+..+..+++|+|+++|++|.+++.+. .+.+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~p---- 247 (279)
T d1hkha_ 172 NLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVP---- 247 (279)
T ss_dssp HBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHCT----
T ss_pred hhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccCHHHHHHHHHHhCC----
Confidence 000 00 00000 00112234567999999999999998754 444444432
Q ss_pred CEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 680 PVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 680 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
++++++++++||.. ..+..+++.+.+.+||+|
T Consensus 248 ~~~~~~i~~~gH~~-~~e~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 248 EADYVEVEGAPHGL-LWTHADEVNAALKTFLAK 279 (279)
T ss_dssp TSEEEEETTCCTTH-HHHTHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCch-HHhCHHHHHHHHHHHHCc
Confidence 45899999999964 335677888889999874
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.62 E-value=3.9e-15 Score=150.30 Aligned_cols=223 Identities=17% Similarity=0.080 Sum_probs=136.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+.-.+++. ||.+|++..+-+++ .|.||++||++.+... |......+ .+||.|+++|.||.+.+...
T Consensus 12 ~~~~v~~~-dG~~i~y~~~G~~~----------g~pvvllHG~~~~~~~--w~~~~~~l-~~~~~vi~~D~rG~G~S~~~ 77 (313)
T d1wm1a_ 12 DSGWLDTG-DGHRIYWELSGNPN----------GKPAVFIHGGPGGGIS--PHHRQLFD-PERYKVLLFDQRGCGRSRPH 77 (313)
T ss_dssp EEEEEECS-SSCEEEEEEEECTT----------SEEEEEECCTTTCCCC--GGGGGGSC-TTTEEEEEECCTTSTTCBST
T ss_pred cCCEEEeC-CCcEEEEEEecCCC----------CCeEEEECCCCCcccc--hHHHHHHh-hcCCEEEEEeCCCccccccc
Confidence 45567776 89999977765432 2568889998665433 34444333 56999999999976544221
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc---
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET--- 617 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~--- 617 (732)
... ......+..+.+..+..+. ...++.++|||+||.+++.++. +|++++..+..++...........
T Consensus 78 ---~~~---~~~~~~~~~~d~~~~~~~~--~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~ 149 (313)
T d1wm1a_ 78 ---ASL---DNNTTWHLVADIERLREMA--GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQD 149 (313)
T ss_dssp ---TCC---TTCSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTS
T ss_pred ---ccc---cccchhhHHHHHHhhhhcc--CCCcceeEeeecCCchhhHHHHHHhhhheeeeeccccccccccccccccc
Confidence 111 1123445555555555543 4578999999999999999988 999999999887654321100000
Q ss_pred -----------------ch-----hhhhhhh-------------------------hhcCChhh----------------
Q 004735 618 -----------------HK-----FESRYID-------------------------NLVGSEKD---------------- 634 (732)
Q Consensus 618 -----------------~~-----~~~~~~~-------------------------~~~~~~~~---------------- 634 (732)
.. ....... ........
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (313)
T d1wm1a_ 150 GASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFARIE 229 (313)
T ss_dssp SGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhHHhhhhhhh
Confidence 00 0000000 00000000
Q ss_pred --hhhc---------CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHH
Q 004735 635 --YYEK---------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTL 703 (732)
Q Consensus 635 --~~~~---------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~ 703 (732)
+... ........+++|+|+++|++|.++|+..++++.+.++ ++++++++++||.+.. .+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~p~~~~~~l~~~~p----~a~~~~i~~aGH~~~e----P~~~ 301 (313)
T d1wm1a_ 230 NHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWP----EAELHIVEGAGHSYDE----PGIL 301 (313)
T ss_dssp HHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHCT----TSEEEEETTCCSSTTS----HHHH
T ss_pred hhhhhhhcccccchhhhhhhhhhCCCCEEEEEECCCCccCHHHHHHHHHHCC----CCEEEEECCCCCCcCC----chHH
Confidence 0000 0011234467999999999999999999988888775 4589999999996543 2444
Q ss_pred HHHHHHHHHHh
Q 004735 704 EQQMVFFARVV 714 (732)
Q Consensus 704 ~~~~~fl~~~l 714 (732)
.++++.++++.
T Consensus 302 ~~lv~a~~~f~ 312 (313)
T d1wm1a_ 302 HQLMIATDRFA 312 (313)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 55666666654
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=4.1e-15 Score=148.80 Aligned_cols=240 Identities=13% Similarity=0.099 Sum_probs=148.9
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---HHHHHHHCCCEEEEEcCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~rG~~ 536 (732)
.++.+++++...|+.++..+. .+++|+|+++||.++......|.. ..+.+.+.|++|+.||-...+
T Consensus 5 ~v~~~~~~s~~~~r~i~~~~~-----------~~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~~~ 73 (280)
T d1dqza_ 5 PVEYLQVPSASMGRDIKVQFQ-----------GGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSS 73 (280)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-----------CCSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTC
T ss_pred EEEEEEEecccCCCcceEEee-----------CCCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCCCC
Confidence 356677777656888887763 234699999999754443333332 457788899999999953222
Q ss_pred CCChhhHHhhc-cCC-CcccHHH--HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH
Q 004735 537 GYGREFRERLL-GRW-GIVDVND--CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 611 (732)
Q Consensus 537 g~g~~~~~~~~-~~~-~~~~~~D--~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~ 611 (732)
.+ ..+..... ... +....++ +.+.+.++.+++.+|++|++|+|+||||++|+.++. +|++|+++++++|..+..
T Consensus 74 ~~-~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~ 152 (280)
T d1dqza_ 74 FY-TDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPS 152 (280)
T ss_dssp TT-SBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTT
T ss_pred cC-ccccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcc
Confidence 11 11111110 000 1112222 456677887888899999999999999999999998 999999999999987653
Q ss_pred HHHhhcch------hhhhhhhhhcC--ChhhhhhcCccccCCCC---CCCEEEEEeCCCCccC--------------hHH
Q 004735 612 MLRAETHK------FESRYIDNLVG--SEKDYYEKSPINFVDKF---SCPIILFQGLEDKVVP--------------PDQ 666 (732)
Q Consensus 612 ~~~~~~~~------~~~~~~~~~~~--~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~~v~--------------~~~ 666 (732)
........ .........++ ....+...+|...++++ ..++++.+|..|.... ...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~~~ 232 (280)
T d1dqza_ 153 ESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRT 232 (280)
T ss_dssp STTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred cCcchhhhhhhHhhccCCCHhhccCCcchhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHHHH
Confidence 21110000 00001111222 23455667777666554 3678889998876432 345
Q ss_pred HHHHHHHHHhCCCC-EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 667 ARKIYKALKENGLP-VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 667 ~~~~~~~l~~~g~~-~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
..++.+.|+++|.. +.+...++++|.+ ..+.+.+..++-.+.++|
T Consensus 233 ~~~~~~~l~~~g~~~~~~~~~~~GgH~W---~~W~~~L~~~~p~~~~~l 278 (280)
T d1dqza_ 233 NQTFRDTYAADGGRNGVFNFPPNGTHSW---PYWNEQLVAMKADIQHVL 278 (280)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSCCCSSH---HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEcCCCccCc---hHHHHHHHHHhHHHHHHh
Confidence 67788889888865 4444455678976 244555555555555554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.59 E-value=4.8e-14 Score=145.60 Aligned_cols=183 Identities=9% Similarity=0.014 Sum_probs=136.7
Q ss_pred ceeEE-ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 148 GAFRI-FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 148 ~~~~~-~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
..|++ +++.+++.. .++||++|+++ +..++++.. .+...++|||||++|+++..+.+ ..|+++
T Consensus 8 ~~fSP~dG~~~a~~~--~g~v~v~d~~~--~~~~~~~~~-----~~v~~~~~spDg~~l~~~~~~~g-------~~v~v~ 71 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS--RGQAFIQDVSG--TYVLKVPEP-----LRIRYVRRGGDTKVAFIHGTREG-------DFLGIY 71 (360)
T ss_dssp EEEEECGGGCEEEEE--TTEEEEECTTS--SBEEECSCC-----SCEEEEEECSSSEEEEEEEETTE-------EEEEEE
T ss_pred ccccCCCCCEEEEEE--CCeEEEEECCC--CcEEEccCC-----CCEEEEEECCCCCEEEEEEcCCC-------CEEEEE
Confidence 35888 677888875 56899999987 778887643 45677899999999888876442 578999
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|+++++ .+++..........+|||||++|++.. ....+++++++ +++. ...+.... .....+
T Consensus 72 d~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~--------~~~~~~~~~~~-~~~~--~~~~~~~~----~~~~~~ 133 (360)
T d1k32a3 72 DYRTGK---AEKFEENLGNVFAMGVDRNGKFAVVAN--------DRFEIMTVDLE-TGKP--TVIERSRE----AMITDF 133 (360)
T ss_dssp ETTTCC---EEECCCCCCSEEEEEECTTSSEEEEEE--------TTSEEEEEETT-TCCE--EEEEECSS----SCCCCE
T ss_pred ECCCCc---EEEeeCCCceEEeeeecccccccceec--------ccccccccccc-ccce--eeeeeccc----ccccch
Confidence 999998 888888777778899999999999887 34458999988 6765 33444443 556789
Q ss_pred eeCCCCc-EEEEEecc------CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEE
Q 004735 307 KWSSKGE-LFFVTDRK------NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (732)
Q Consensus 307 ~wspDg~-l~~~~~~~------~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~ 376 (732)
.|+|||+ |++..... .....++.++..+++...++..........|++ +++.|++.+.
T Consensus 134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~sp------------dg~~l~~~s~ 198 (360)
T d1k32a3 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA------------DSKNLYYLSY 198 (360)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECT------------TSCEEEEEES
T ss_pred hhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccC------------CCCEEEEEeC
Confidence 9999999 77765431 234568888999998888876554444455665 7777776654
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.58 E-value=1.3e-14 Score=142.18 Aligned_cols=200 Identities=12% Similarity=0.080 Sum_probs=116.7
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
...|+||++||.+.+ ...|...+..|++.||.|+++|+||.|........ ...+...+...+.......
T Consensus 14 ~~~P~ivllHG~~~~--~~~~~~~~~~L~~~g~~vi~~Dl~G~G~s~~~~~~---------~~~~~~~~~~~~~~~~~~~ 82 (264)
T d1r3da_ 14 ARTPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPGHGTNPERHCD---------NFAEAVEMIEQTVQAHVTS 82 (264)
T ss_dssp TTBCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCT
T ss_pred CCCCeEEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEeccccccccccccc---------ccchhhhhhhhcccccccc
Confidence 456889999998543 46678888999999999999999976543222110 0111222222222222345
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC------HHHHHh--h-cc------------hhhhhhhh-hhc
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD------LSMLRA--E-TH------------KFESRYID-NLV 629 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d------~~~~~~--~-~~------------~~~~~~~~-~~~ 629 (732)
.+++.++|||+||.+++.++. +|+.+..++...+... ...... . .. .....+.. ...
T Consensus 83 ~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (264)
T d1r3da_ 83 EVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQQAVF 162 (264)
T ss_dssp TSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTTSGGG
T ss_pred cCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 678999999999999999888 8888877765543211 000000 0 00 00000000 000
Q ss_pred C-----------------Chh----hhhh------cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEE
Q 004735 630 G-----------------SEK----DYYE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 682 (732)
Q Consensus 630 ~-----------------~~~----~~~~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (732)
. ... .... ......+..+++|+++++|++|..+ ..+.+. . +++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~-----~~~~~~-~----~~~ 232 (264)
T d1r3da_ 163 SSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKF-----QQLAES-S----GLS 232 (264)
T ss_dssp TTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHH-----HHHHHH-H----CSE
T ss_pred cccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHH-----HHHHhc-C----CCe
Confidence 0 000 0000 0111234578899999999999643 122221 1 458
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 683 LVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 683 ~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+++++++||.. ..++.+++.+.+.+||+..+
T Consensus 233 ~~~i~~~gH~~-~~e~P~~~~~~i~~fl~~l~ 263 (264)
T d1r3da_ 233 YSQVAQAGHNV-HHEQPQAFAKIVQAMIHSII 263 (264)
T ss_dssp EEEETTCCSCH-HHHCHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCch-HHHCHHHHHHHHHHHHHhcc
Confidence 99999999964 34677888999999998764
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=8.6e-15 Score=146.23 Aligned_cols=248 Identities=15% Similarity=0.164 Sum_probs=152.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCC-CCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHHCCCEEEEEcCCCC--
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQ-ASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGS-- 535 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~-~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rG~-- 535 (732)
+..++++.+..-|.++...+|.|+...-. .++++++|+|+++||.+.....+.. ....+.+.+.|++|+.++....
T Consensus 13 ~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~~ 92 (299)
T d1pv1a_ 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGD 92 (299)
T ss_dssp EEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEECCSSCCST
T ss_pred EEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCHHHHHHhhhHHHHHHHcCCceecCCCccccc
Confidence 45678888876789999999999874211 1235679999999997544322211 1134556677999999873211
Q ss_pred --C---------CCChhhHHhhc-cCC-CcccHHHH--HHHHHHHHhcCCC-------CCCcEEEEEcChHHHHHHHHHh
Q 004735 536 --T---------GYGREFRERLL-GRW-GIVDVNDC--CSCATFLVGSGKA-------DEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 536 --~---------g~g~~~~~~~~-~~~-~~~~~~D~--~~~i~~l~~~~~~-------d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
. +....+..... ..+ +....+|. .+.+.++.+...+ +.++.+|.|+||||+.|+.++.
T Consensus 93 ~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~al 172 (299)
T d1pv1a_ 93 EVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYL 172 (299)
T ss_dssp TSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHHH
T ss_pred ccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHHH
Confidence 0 00011100000 000 01112221 2344455444333 3368999999999999998875
Q ss_pred ---CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcC-ChhhhhhcCccccCC---CC-CCCEEEEEeCCCCccChH
Q 004735 594 ---FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVD---KF-SCPIILFQGLEDKVVPPD 665 (732)
Q Consensus 594 ---~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~---~i-~~P~Lii~G~~D~~v~~~ 665 (732)
+|++|.++++.+|..++....... ......++ +...+...++...+. +. ..++++.+|++|......
T Consensus 173 ~~~~p~~f~~~~s~s~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D~~~~~~ 247 (299)
T d1pv1a_ 173 KGYSGKRYKSCSAFAPIVNPSNVPWGQ-----KAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEH 247 (299)
T ss_dssp HTGGGTCCSEEEEESCCCCSTTSHHHH-----HHHHHHSCC----CGGGCHHHHGGGSCCCTTCCEEEECCTTCTTTTTT
T ss_pred HhcCCCceEEEeeccCcCCcccccchh-----hhhhhhcccchhhhhhcCHHHHHHHhhccCCcceeEecCCCCcchhhh
Confidence 699999999999988754322211 11122232 234455555544433 22 256888899999876543
Q ss_pred -HHHHHHHHHHhCCCC--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 666 -QARKIYKALKENGLP--VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 666 -~~~~~~~~l~~~g~~--~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
..+.+.+++++++.+ +++...+|.+|.+ ..+...+...+.|+.++|+
T Consensus 248 ~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw---~yW~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 248 LKPELLLEAVKATSWQDYVEIKKVHGFDHSY---YFVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp CCTHHHHHHHTTSTTTTSEEEECCTTCCSSH---HHHHHHHHHHHHHHHHHTT
T ss_pred hcHHHHHHHHHhcCCCcceEEEecCCCCcCH---HHHHHHHHHHHHHHHHhcC
Confidence 356788889888864 7888888888986 3567788888999999987
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.56 E-value=1.4e-16 Score=162.75 Aligned_cols=222 Identities=15% Similarity=0.040 Sum_probs=130.4
Q ss_pred EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-----ccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-----LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 476 ~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-----~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
.+.++.|.+ .++.| ||++||++.+...+. +...++.++++||.|+++|+||.+.++..........+
T Consensus 47 ~v~~~~p~~-------~~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~~~~ 118 (318)
T d1qlwa_ 47 YVRYQIPQR-------AKRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 118 (318)
T ss_dssp EEEEEEETT-------CCSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHT
T ss_pred EEEEECCCC-------CCCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCHHHH
Confidence 334456654 44566 567899977655443 23478899999999999999998877665433222222
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCCHHH-------HHhhcchhh
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADLSM-------LRAETHKFE 621 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d~~~-------~~~~~~~~~ 621 (732)
.. ++.+.+ ........+++++|||+||.++..++. + +......++..+...... .........
T Consensus 119 ~~----~~~~~l----~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (318)
T d1qlwa_ 119 GK----APASSL----PDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLA 190 (318)
T ss_dssp TS----SCGGGS----CCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHH
T ss_pred HH----HHHHHH----HHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHH
Confidence 11 111111 111223456778899999988766655 2 222111111111110000 000000000
Q ss_pred hh-------------hhhhhc--CChh---------hhhhcCccccCCCCCCCEEEEEeCCCCccCh-----HHHHHHHH
Q 004735 622 SR-------------YIDNLV--GSEK---------DYYEKSPINFVDKFSCPIILFQGLEDKVVPP-----DQARKIYK 672 (732)
Q Consensus 622 ~~-------------~~~~~~--~~~~---------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~-----~~~~~~~~ 672 (732)
.. ...... ..++ .+....+......+++|+|+++|++|.++|. ..+..+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Lii~G~~D~~~p~~~~~~~~~~~~~~ 270 (318)
T d1qlwa_ 191 IKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFID 270 (318)
T ss_dssp HHHTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHH
T ss_pred hhhccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCCEEEEecCcCcccChhhhHHHHHHHHHH
Confidence 00 000000 0011 1112244555667789999999999999984 55677889
Q ss_pred HHHhCCCCEEEEEeC-----CCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 673 ALKENGLPVALVEYE-----GEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 673 ~l~~~g~~~~~~~~~-----~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
.+++.|.+++++.+| |+||.+..+.+.+++.+.+++||+++
T Consensus 271 ~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 271 ALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp HHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 999999999999977 56698766667789999999999986
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.52 E-value=3.4e-13 Score=145.49 Aligned_cols=315 Identities=9% Similarity=0.013 Sum_probs=185.5
Q ss_pred CccCceEEcC-CCcEEEEeecCC---CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~ 164 (732)
..+..+.||| |+.|.|...... ......++.++..+| +...+...+..+ ....|++++..|+|+. +
T Consensus 62 ~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-~~~~l~~~~~~~-------~~~~~SPDG~~ia~~~--~ 131 (470)
T d2bgra1 62 HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-QLITEERIPNNT-------QWVTWSPVGHKLAYVW--N 131 (470)
T ss_dssp SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECCSSCCCTTE-------EEEEECSSTTCEEEEE--T
T ss_pred CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-cccccccCCccc-------cccccccCcceeeEee--c
Confidence 4567899999 999988753110 012234566666643 444444333111 1234666677999985 5
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCe---------------EeeceeecCCCCEEEEEEeccCCC--------------
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLV---------------SYADGIFDPRFNRYVTVREDRRQD-------------- 215 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~---------------~~~~~~~spdG~~l~~~~~~~~~~-------------- 215 (732)
++||++++.+ +...+++........ ....+.|||||++|+|.+.+....
T Consensus 132 ~~l~~~~~~~--g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~ 209 (470)
T d2bgra1 132 NDIYVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQ 209 (470)
T ss_dssp TEEEEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCS
T ss_pred ccceEEECCC--CceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCC
Confidence 6799999998 777777754321111 112355999999999987543210
Q ss_pred -------------CCCceeEEEEEEcCCCCccccEEcc------------cCCCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 216 -------------ALNSTTEIVAIALNGQNIQEPKVLV------------SGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 216 -------------~~~~~~~l~~~d~~~~~~~~~~~lt------------~~~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
.......++++++.++. ...+. .+......+.|+++++.+++...+..+ .
T Consensus 210 ~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~--~ 284 (470)
T d2bgra1 210 YPKTVRVPYPKAGAVNPTVKFFVVNTDSLS---SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN--Y 284 (470)
T ss_dssp SCEEEEEECCBTTSCCCEEEEEEEEGGGCC---SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT--E
T ss_pred CCeeeeeccccccccCCcceEEEEECCCcc---eeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCC--c
Confidence 01124567777877665 22111 112234567899998755554322221 0
Q ss_pred CccEEEEEEecCCCceeeeE---EecCCCCCcc--ccCcCceeCCCCc--EEEEEeccCCeeeEEEEeccCCeEEEeccc
Q 004735 271 DKAELWVGYISENGDVYKRV---CVAGFDPTIV--ESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAIYSL 343 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~---~~~~~~~~~~--~~~~~~~wspDg~--l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 343 (732)
....++.+|.. +|....+. ........|. .....+.|++++. +++.+.+ .|..+||+++.++++.+.++.+
T Consensus 285 ~~~~~~~~d~~-tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~-dg~~~ly~~~~~g~~~~~lt~g 362 (470)
T d2bgra1 285 SVMDICDYDES-SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE-EGYRHICYFQIDKKDCTFITKG 362 (470)
T ss_dssp EEEEEEEEETT-TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT-TSCEEEEEEETTCSCCEESCCS
T ss_pred eEEEEEEecCC-CCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEecc-CcCceeEEEeccCCceeeeccC
Confidence 12234444544 45442221 0111111111 1234678888876 5666776 8899999999999999999877
Q ss_pred ccccCCCceeecccceeeeeecCCCCEEEEEEEEC----CEEEEEEEECCCC-ceEEeccC----CCceEEe--eEeCCE
Q 004735 344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN----GRSYLGILDDFGH-SLSLLDIP----FTDIDNI--TLGNDC 412 (732)
Q Consensus 344 ~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~----g~~~ly~~~~~~~-~~~~lt~~----~~~v~~~--~~~~~~ 412 (732)
+.++... +.. +++.+||++... +..|||+++++++ +.++||.. ...+..+ +++++.
T Consensus 363 ~~~v~~~-~~~------------d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky 429 (470)
T d2bgra1 363 TWEVIGI-EAL------------TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKY 429 (470)
T ss_dssp SSCEEEE-EEE------------CSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSE
T ss_pred CeeEEEE-EEE------------CCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCE
Confidence 6554432 222 677898887543 4579999999875 56777642 2234444 566666
Q ss_pred EEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 413 LFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 413 ~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
++..+++++.|. +.+++..+++.
T Consensus 430 ~~~~~s~~~~P~-~~l~~~~~g~~ 452 (470)
T d2bgra1 430 YQLRCSGPGLPL-YTLHSSVNDKG 452 (470)
T ss_dssp EEEEECSBSSCE-EEEEETTTTEE
T ss_pred EEEEecCCCCCe-EEEEECCCCCE
Confidence 777888888776 45666666653
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.51 E-value=2e-14 Score=143.22 Aligned_cols=213 Identities=15% Similarity=0.039 Sum_probs=128.0
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-----cHHHHHHH----HCCCEEEE
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-----NLSIQYWT----SRGWAFVD 529 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-----~~~~~~l~----~~G~~v~~ 529 (732)
.+.+.+++++. +| +..+.+|.|++.+ +++++|+|+++||+++....... ......+. ...+.|+.
T Consensus 25 g~v~~~~~~~~-~~-~r~~~vylP~~y~----~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 98 (273)
T d1wb4a1 25 GRIVKETYTGI-NG-TKSLNVYLPYGYD----PNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVT 98 (273)
T ss_dssp CEEEEEEEEET-TE-EEEEEEEECTTCC----TTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEE
T ss_pred CeEEEEEEecC-CC-eEEEEEEeCCCCC----CCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeec
Confidence 46788899886 55 5689999999843 46789999999998654333211 12222222 23688999
Q ss_pred EcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 530 VNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 530 ~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
+++++..+.+..+.......... .+..+....+..+..+..+|+++++|+|+|+||++++.++. +|++|+++++++|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~ 178 (273)
T d1wb4a1 99 PTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGD 178 (273)
T ss_dssp CCSCSTTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCC
T ss_pred cccCCCCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcc
Confidence 99887766666544332211100 00111111112222233478999999999999999999988 99999999999998
Q ss_pred CCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHh----------C
Q 004735 608 ADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE----------N 677 (732)
Q Consensus 608 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~----------~ 677 (732)
.................. . .........++++.+|..|.. ......+.+.+.. .
T Consensus 179 ~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 242 (273)
T d1wb4a1 179 YWYGNSPQDKANSIAEAI----------N----RSGLSKREYFVFAATGSEDIA--YANMNPQIEAMKALPHFDYTSDFS 242 (273)
T ss_dssp CCBSSSHHHHHHHHHHHH----------H----HHTCCTTSCEEEEEEETTCTT--HHHHHHHHHHHHTSTTCCBBSCTT
T ss_pred cccCCCcccccccchhhh----------h----hhhhcccceEEEEecCCCCcc--cccchhHHHHHHHHHHHHHHHHhc
Confidence 754332111100000000 0 011222334567778877754 3444444444433 3
Q ss_pred CCCEEEEEeCCCCccC
Q 004735 678 GLPVALVEYEGEQHGF 693 (732)
Q Consensus 678 g~~~~~~~~~~~gH~~ 693 (732)
+.++.+.++++++|.+
T Consensus 243 ~~~~~~~~~~~ggH~w 258 (273)
T d1wb4a1 243 KGNFYFLVAPGATHWW 258 (273)
T ss_dssp TCCEEEEEETTCCSSH
T ss_pred CCCEEEEEECCCccCH
Confidence 4578999999999954
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.48 E-value=4.5e-13 Score=133.84 Aligned_cols=215 Identities=10% Similarity=0.038 Sum_probs=124.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++... + ..|.||++||.+.+. ..|...+..|+ .+|.|+++|+||.+...... .....
T Consensus 16 ~g~~i~y~~~-----------G-~g~~vvllHG~~~~~--~~~~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~---~~~~~ 77 (298)
T d1mj5a_ 16 KGRRMAYIDE-----------G-TGDPILFQHGNPTSS--YLWRNIMPHCA-GLGRLIACDLIGMGDSDKLD---PSGPE 77 (298)
T ss_dssp TTEEEEEEEE-----------S-CSSEEEEECCTTCCG--GGGTTTGGGGT-TSSEEEEECCTTSTTSCCCS---SCSTT
T ss_pred CCEEEEEEEE-----------c-CCCcEEEECCCCCCH--HHHHHHHHHHh-cCCEEEEEeCCCCCCCCCCc---ccccc
Confidence 7889986543 1 236789999985443 44555666665 56999999999865433221 11111
Q ss_pred CcccHHHHHHHHH-HHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh-------------
Q 004735 551 GIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA------------- 615 (732)
Q Consensus 551 ~~~~~~D~~~~i~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~------------- 615 (732)
.....+..+.+. .+.+.. ..+++.++|||+||.+++.++. +|++++++++..+.........
T Consensus 78 -~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
T d1mj5a_ 78 -RYAYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFR 154 (298)
T ss_dssp -SSCHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHH
T ss_pred -ccccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccccccccchhhhhhhhhhhhhhh
Confidence 112333343333 333432 3568999999999999999998 9999999988765432110000
Q ss_pred ---------hcchhhhhhhhhhcC---Ch--------------hhh---------------------hhcCccccCCCCC
Q 004735 616 ---------ETHKFESRYIDNLVG---SE--------------KDY---------------------YEKSPINFVDKFS 648 (732)
Q Consensus 616 ---------~~~~~~~~~~~~~~~---~~--------------~~~---------------------~~~sp~~~~~~i~ 648 (732)
....+.......... .. ... ........+..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (298)
T d1mj5a_ 155 SQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESP 234 (298)
T ss_dssp STTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhhhhhhhhhhhhhhccccccccchhhhhhhhhhhhccchhhhhhhhhhhhhhhhcchhhhhhhhhhhhhhhhhhcc
Confidence 000000000000000 00 000 0000011256788
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
+|+|+++|++|.+++ ....++. +.-...++++. ++||.. ..+..+++.+.+.+||++.
T Consensus 235 ~P~l~i~g~~d~~~~-~~~~~~~----~~~p~~~~~~~-~~GH~~-~~e~P~~v~~~i~~fl~~~ 292 (298)
T d1mj5a_ 235 IPKLFINAEPGALTT-GRMRDFC----RTWPNQTEITV-AGAHFI-QEDSPDEIGAAIAAFVRRL 292 (298)
T ss_dssp SCEEEEEEEECSSSS-HHHHHHH----TTCSSEEEEEE-EESSCG-GGTCHHHHHHHHHHHHHHH
T ss_pred eeEEEEecCCCCcCh-HHHHHHH----HHCCCCEEEEe-CCCCch-HHhCHHHHHHHHHHHHhhh
Confidence 999999999998765 3333333 33334566555 569954 4567889999999999886
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.38 E-value=7.5e-12 Score=128.71 Aligned_cols=180 Identities=9% Similarity=-0.080 Sum_probs=127.1
Q ss_pred eeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccE
Q 004735 196 GIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (732)
Q Consensus 196 ~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~ 274 (732)
..||| ||+++++... .+||++|+.++. .+++.. ...+..++|||||++|++.+.+. ...
T Consensus 8 ~~fSP~dG~~~a~~~~----------g~v~v~d~~~~~---~~~~~~-~~~v~~~~~spDg~~l~~~~~~~------g~~ 67 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSR----------GQAFIQDVSGTY---VLKVPE-PLRIRYVRRGGDTKVAFIHGTRE------GDF 67 (360)
T ss_dssp EEEEECGGGCEEEEET----------TEEEEECTTSSB---EEECSC-CSCEEEEEECSSSEEEEEEEETT------EEE
T ss_pred ccccCCCCCEEEEEEC----------CeEEEEECCCCc---EEEccC-CCCEEEEEECCCCCEEEEEEcCC------CCE
Confidence 45999 9999988754 689999999998 788764 34567899999999999987443 345
Q ss_pred EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecc-cccccCCCce
Q 004735 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLW 352 (732)
Q Consensus 275 l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w 352 (732)
|+++|++ +|+.. .+.... ..+..+.|+|||+ |++.... ..++.++.++++...+.. .........|
T Consensus 68 v~v~d~~-~~~~~---~~~~~~----~~v~~~~~spdg~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (360)
T d1k32a3 68 LGIYDYR-TGKAE---KFEENL----GNVFAMGVDRNGKFAVVANDR----FEIMTVDLETGKPTVIERSREAMITDFTI 135 (360)
T ss_dssp EEEEETT-TCCEE---ECCCCC----CSEEEEEECTTSSEEEEEETT----SEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred EEEEECC-CCcEE---EeeCCC----ceEEeeeecccccccceeccc----cccccccccccceeeeeecccccccchhh
Confidence 8999998 67653 333443 5667889999999 6654433 357778888888776653 3333444556
Q ss_pred eecccceeeeeecCCCCEEEEEEEEC-------CEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeC
Q 004735 353 VFGINSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~s~~~-------g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~ 419 (732)
++ +++.|++..... ....+++++..+++...++.....+..+ ...+++.+++.+.
T Consensus 136 sp------------dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~ 198 (360)
T d1k32a3 136 SD------------NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 198 (360)
T ss_dssp CT------------TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred cc------------ceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeC
Confidence 55 888888877543 3466888999999888888776655544 3444444444443
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.37 E-value=4e-12 Score=133.48 Aligned_cols=118 Identities=17% Similarity=-0.047 Sum_probs=85.7
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCC------CEEEEEcCCCCCCCChhhHH
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG------WAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G------~~v~~~d~rG~~g~g~~~~~ 544 (732)
+|..||..-.... .+..|.||++||.|++. ..|..++..|++.| |.|++||+||.|.+...
T Consensus 90 ~G~~iHf~h~~~~--------~~~~~pLlLlHG~P~s~--~~w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P--- 156 (394)
T d1qo7a_ 90 EGLTIHFAALFSE--------REDAVPIALLHGWPGSF--VEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGP--- 156 (394)
T ss_dssp TTEEEEEEEECCS--------CTTCEEEEEECCSSCCG--GGGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCC---
T ss_pred CCEEEEEEEEecc--------CCCCCEEEEeccccccH--HHHHHHHHhhccccCCcccceeeecccccccCCCCCC---
Confidence 7999996655443 34467899999987654 66778889999988 99999999965543221
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecC
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYG 606 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~ 606 (732)
... ......++.+.+..+..... .++..++|||+||.++..++. +|+.+.++++...
T Consensus 157 ~~~---~~y~~~~~a~~~~~l~~~lg--~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~ 214 (394)
T d1qo7a_ 157 PLD---KDFGLMDNARVVDQLMKDLG--FGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC 214 (394)
T ss_dssp CSS---SCCCHHHHHHHHHHHHHHTT--CTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCC---CccCHHHHHHHHHHHHhhcc--CcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence 111 12345666666666666533 458899999999999998888 8888888877654
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=5.3e-12 Score=123.77 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHC--CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
+| ||++||.+.+ ...|......|.+. ||.|+++|+||.+ .+.... ...++++.+.+..++++. .
T Consensus 3 ~P-vvllHG~~~~--~~~~~~~~~~l~~~~~~~~v~~~d~~G~g---~S~~~~------~~~~~~~~~~l~~~l~~l--~ 68 (268)
T d1pjaa_ 3 KP-VIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFDGR---ESLRPL------WEQVQGFREAVVPIMAKA--P 68 (268)
T ss_dssp CC-EEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSCSG---GGGSCH------HHHHHHHHHHHHHHHHHC--T
T ss_pred CC-EEEECCCCCC--HHHHHHHHHHHHhhCCCeEEEEeCCCCCC---CCCCcc------ccCHHHHHHHHHHHHhcc--C
Confidence 35 5679998544 45677788888875 8999999999644 432211 123555666666555553 3
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCC-cceEEEeecCc
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRD-TFKAGASLYGV 607 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~-~~~a~v~~~~~ 607 (732)
+++.|+|||+||.+++.++. +|+ +++.+++.++.
T Consensus 69 -~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~~ 104 (268)
T d1pjaa_ 69 -QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSP 104 (268)
T ss_dssp -TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCC
T ss_pred -CeEEEEccccHHHHHHHHHHHCCccccceEEEECCC
Confidence 79999999999999999998 998 69999888763
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.25 E-value=3.4e-11 Score=110.85 Aligned_cols=166 Identities=16% Similarity=0.014 Sum_probs=108.7
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
| ||++||... ....|..+++.|.++||.|+.++++|......... ...+++.+.++.+.++. ..++
T Consensus 4 P-Vv~vHG~~~--~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~i~~~~~~~--~~~~ 69 (179)
T d1ispa_ 4 P-VVMVHGIGG--ASFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY---------NNGPVLSRFVQKVLDET--GAKK 69 (179)
T ss_dssp C-EEEECCTTC--CGGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH---------HHHHHHHHHHHHHHHHH--CCSC
T ss_pred C-EEEECCCCC--CHHHHHHHHHHHHHcCCeEEEEecCCccccccccc---------hhhhhHHHHHHHHHHhc--CCce
Confidence 5 567899843 34567788999999999999998876543322111 12455666677666653 3468
Q ss_pred EEEEEcChHHHHHHHHHh-C--CCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEE
Q 004735 576 LCITGGSAGGYTTLAALA-F--RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPII 652 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~L 652 (732)
+.|+||||||.++..++. + +++++.+|.+++....... ..+. ........|++
T Consensus 70 v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~------------~~l~------------~~~~~~~~~~~ 125 (179)
T d1ispa_ 70 VDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG------------KALP------------GTDPNQKILYT 125 (179)
T ss_dssp EEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS------------BCCC------------CSCTTCCCEEE
T ss_pred EEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchh------------hhcC------------CcccccCceEE
Confidence 999999999999998886 4 7789999988875321100 0000 01123457999
Q ss_pred EEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
.++|..|.+|++..+. + ...+.+.+++.+|.... .+ .+.++.+.+||
T Consensus 126 ~i~~~~D~~v~~~~~~-----l----~~~~~~~~~~~~H~~l~-~~-~~v~~~i~~~L 172 (179)
T d1ispa_ 126 SIYSSADMIVMNYLSR-----L----DGARNVQIHGVGHIGLL-YS-SQVNSLIKEGL 172 (179)
T ss_dssp EEEETTCSSSCHHHHC-----C----BTSEEEEESSCCTGGGG-GC-HHHHHHHHHHH
T ss_pred EEEecCCcccCchhhc-----C----CCceEEEECCCCchhhc-cC-HHHHHHHHHHH
Confidence 9999999999985431 1 13367788999995322 22 34555555555
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.24 E-value=3.1e-10 Score=113.38 Aligned_cols=248 Identities=11% Similarity=0.106 Sum_probs=149.8
Q ss_pred CCHHHHhccCCcc-CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE-CC
Q 004735 79 LTADVVSGASKRL-GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GD 155 (732)
Q Consensus 79 ~~~~~i~~~~~~~-~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~-~~ 155 (732)
++.+.+......+ |+|.|++ ++.+||+++.. + .|+++++++| +.+ +...+ ....++++. ++
T Consensus 7 ~~~~~~~~~~~~LgEgp~wd~~~~~l~wvDi~~---~--~I~r~d~~~g-~~~-~~~~~---------~~~~~i~~~~dg 70 (295)
T d2ghsa1 7 FAGRVLDETPMLLGEGPTFDPASGTAWWFNILE---R--ELHELHLASG-RKT-VHALP---------FMGSALAKISDS 70 (295)
T ss_dssp CCCEEEECSCCSBEEEEEEETTTTEEEEEEGGG---T--EEEEEETTTT-EEE-EEECS---------SCEEEEEEEETT
T ss_pred eeEEEEcCCCCeeeeCCeEECCCCEEEEEECCC---C--EEEEEECCCC-eEE-EEECC---------CCcEEEEEecCC
Confidence 4444444444455 8999999 99999999843 3 4888887754 222 22111 112334443 44
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCC-CCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~-~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
.+++.. ...|+++|.++ ++.+.+... ...+..+.++..++|+|+.++.........+ ...+|.++ .++
T Consensus 71 ~l~va~--~~gl~~~d~~t--g~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~---~g~l~~~~--~g~-- 139 (295)
T d2ghsa1 71 KQLIAS--DDGLFLRDTAT--GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETG---AGSIYHVA--KGK-- 139 (295)
T ss_dssp EEEEEE--TTEEEEEETTT--CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTT---CEEEEEEE--TTE--
T ss_pred CEEEEE--eCccEEeeccc--ceeeEEeeeecCCCcccceeeEECCCCCEEEEecccccccc---ceeEeeec--CCc--
Confidence 666654 34699999998 777776543 2234578899999999996554444322221 36777765 456
Q ss_pred ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-e-eeeEE---ecCCCCCccccCcCceeC
Q 004735 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-V-YKRVC---VAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 235 ~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~-~~~~~---~~~~~~~~~~~~~~~~ws 309 (732)
.+.+..+....+++.||||++.|++.... ...||.++++..+. . .+... ..+.. ..+..+...
T Consensus 140 -~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~-------~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~----g~pdG~~vD 207 (295)
T d2ghsa1 140 -VTKLFADISIPNSICFSPDGTTGYFVDTK-------VNRLMRVPLDARTGLPTGKAEVFIDSTGIK----GGMDGSVCD 207 (295)
T ss_dssp -EEEEEEEESSEEEEEECTTSCEEEEEETT-------TCEEEEEEBCTTTCCBSSCCEEEEECTTSS----SEEEEEEEC
T ss_pred -EEEEeeccCCcceeeecCCCceEEEeecc-------cceeeEeeecccccccccceEEEeccCccc----ccccceEEc
Confidence 66666555566789999999999887632 34599998863221 1 11222 22222 556677888
Q ss_pred CCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 310 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 310 pDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
.||.|++.... ...|.++|+++...+.+.-.....+. ..|-. .+.+.||+++.+.+
T Consensus 208 ~~GnlWva~~~---~g~V~~~dp~G~~~~~i~lP~~~~T~---------~~FGG--~d~~~LyvTta~~~ 263 (295)
T d2ghsa1 208 AEGHIWNARWG---EGAVDRYDTDGNHIARYEVPGKQTTC---------PAFIG--PDASRLLVTSAREH 263 (295)
T ss_dssp TTSCEEEEEET---TTEEEEECTTCCEEEEEECSCSBEEE---------EEEES--TTSCEEEEEEBCTT
T ss_pred CCCCEEeeeeC---CCceEEecCCCcEeeEecCCCCceEE---------EEEeC--CCCCEEEEEECCcC
Confidence 88876654333 23699999987666665411111122 22311 05678888876543
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.23 E-value=1.4e-10 Score=117.30 Aligned_cols=216 Identities=15% Similarity=0.124 Sum_probs=133.3
Q ss_pred CCCCEEEEEcCCCCCccCC-------cccHH---HHHHHHCCCEEEEEcCCCCCCC--ChhhHHh-----hccCCCcccH
Q 004735 493 EKPPLLVKSHGGPTSEARG-------ILNLS---IQYWTSRGWAFVDVNYGGSTGY--GREFRER-----LLGRWGIVDV 555 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~-------~~~~~---~~~l~~~G~~v~~~d~rG~~g~--g~~~~~~-----~~~~~~~~~~ 555 (732)
.+-++||++|+..++.... .|..+ -..+-...|-|+++|..|++.. |....+. ....+....+
T Consensus 37 ~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti 116 (357)
T d2b61a1 37 EKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVV 116 (357)
T ss_dssp TCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCH
T ss_pred CCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccccCCcCCCCCCCCCCCCcccccchh
Confidence 3458999999964443221 11111 1233345699999999885431 1111111 1123455679
Q ss_pred HHHHHHHHHHHhcCCCCCCcE-EEEEcChHHHHHHHHHh-CCCcceEEEeecCcC--CHHHH-H--------hhcchh--
Q 004735 556 NDCCSCATFLVGSGKADEKRL-CITGGSAGGYTTLAALA-FRDTFKAGASLYGVA--DLSML-R--------AETHKF-- 620 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri-~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~--d~~~~-~--------~~~~~~-- 620 (732)
.|.+++-..|+++..+ +|+ +++|.||||+.|+..+. +|++++.+|++++.. ..... . .....+
T Consensus 117 ~D~v~aq~~Ll~~LGI--~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~~~ 194 (357)
T d2b61a1 117 QDIVKVQKALLEHLGI--SHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNG 194 (357)
T ss_dssp HHHHHHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGG
T ss_pred HHHHHHHHHHHHHhCc--ceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccccccchhHHHHHHHHHHHHHcCCCCCC
Confidence 9999999989887554 577 78899999999999988 999999999888753 11100 0 000000
Q ss_pred -------------------------hhhhhhhhcC-------------------------------Chhhh-------hh
Q 004735 621 -------------------------ESRYIDNLVG-------------------------------SEKDY-------YE 637 (732)
Q Consensus 621 -------------------------~~~~~~~~~~-------------------------------~~~~~-------~~ 637 (732)
...++...++ ++..| ..
T Consensus 195 G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~~~ 274 (357)
T d2b61a1 195 GDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRALDM 274 (357)
T ss_dssp GCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHhhCCHHHHHHHHHHhhh
Confidence 0000000000 11111 01
Q ss_pred cCcc-------ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCC-CccCCCcccHHHHHHHHHHH
Q 004735 638 KSPI-------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE-QHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 638 ~sp~-------~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~-gH~~~~~~~~~~~~~~~~~f 709 (732)
.++. ..+++|++|+|+|..+.|...|+++.+++++.|+..++++++++++.. ||.-... ..+++.+.+.+|
T Consensus 275 ~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~~~~~v~~~~I~S~~GHdafL~-e~~~~~~~I~~f 353 (357)
T d2b61a1 275 YDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAFLV-DYDQFEKRIRDG 353 (357)
T ss_dssp CCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGGGHHHH-CHHHHHHHHHHH
T ss_pred cccccccccHHHHHhhcCCCEEEEEeCCccccCHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCc-CHHHHHHHHHHH
Confidence 1111 116789999999999999999999999999999999999999999974 7841111 234455555556
Q ss_pred HH
Q 004735 710 FA 711 (732)
Q Consensus 710 l~ 711 (732)
|+
T Consensus 354 L~ 355 (357)
T d2b61a1 354 LA 355 (357)
T ss_dssp HH
T ss_pred Hc
Confidence 54
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.21 E-value=4.7e-09 Score=110.77 Aligned_cols=308 Identities=11% Similarity=0.082 Sum_probs=179.9
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCC----eEEEEeCCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ----RLYKHSIDS 174 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~----~l~~~d~~~ 174 (732)
|+++||..... ...+..++++....+ ..+.+++...-....-+..++.++++++..++|+-...| .|+++|+.+
T Consensus 83 g~~y~~~~~~~-~~~~~~~~~~~~~~~-~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t 160 (430)
T d1qfma1 83 GKRYFYFYNTG-LQNQRVLYVQDSLEG-EARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (430)
T ss_dssp TTEEEEEEECS-SCSSCEEEEESSSSS-CCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred CCEEEEEEecC-CCccceEEeccccCC-CeeeecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCc
Confidence 66666665544 345556777655433 444444322111111111223333344557888765444 799999998
Q ss_pred CCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCC-------CCCceeEEEEEEcCCCCccccEEcccC---CC
Q 004735 175 KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-------ALNSTTEIVAIALNGQNIQEPKVLVSG---SD 244 (732)
Q Consensus 175 ~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~-------~~~~~~~l~~~d~~~~~~~~~~~lt~~---~~ 244 (732)
++....+.. ...+..+.|++|++.++|+..+.... .......+|+..+.+.... ...+... ..
T Consensus 161 --g~~~~~~i~----~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~-d~~v~~e~d~~~ 233 (430)
T d1qfma1 161 --AKELPDVLE----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE-DILCAEFPDEPK 233 (430)
T ss_dssp --TEEEEEEEE----EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-CEEEECCTTCTT
T ss_pred --ceecccccc----cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccc-cccccccccCCc
Confidence 553322211 22346788999999999987653211 1123468999988876421 2233322 23
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC-Cc----eeeeEEecCCCCCccccCcCceeCCCCc-EEEEE
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GD----VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~-g~----~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~ 318 (732)
+......|+||++|......... ....+|+.|+... +. .....+..... ... .. ...+|. +++.+
T Consensus 234 ~~~~~~~s~d~~~l~i~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-~~~~~~~~~~~T 304 (430)
T d1qfma1 234 WMGGAELSDDGRYVLLSIREGCD---PVNRLWYCDLQQESNGITGILKWVKLIDNFE----GEY-DY-VTNEGTVFTFKT 304 (430)
T ss_dssp CEEEEEECTTSCEEEEEEECSSS---SCCEEEEEEGGGSSSSSCSSCCCEEEECSSS----SCE-EE-EEEETTEEEEEE
T ss_pred eEEeeeccCCcceeeEEeeccCC---ccEEEEEeeCCCcccccccccceeEeecccc----cce-EE-EecCCceeeccc
Confidence 44456789999998765533322 3467899997621 11 11123333322 111 11 122445 77788
Q ss_pred eccCCeeeEEEEeccCCe---EEEecccc-cccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 319 DRKNGFWNLHKWIESNNE---VLAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~g~---~~~l~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
+.......|..++++... .+.|.++. .... ...+.+ .++.|++....++...|++++++++...
T Consensus 305 n~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~-------~~~~~~-----~~~~lvl~~~~~~~~~l~v~~~~~~~~~ 372 (430)
T d1qfma1 305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL-------EWVACV-----RSNFLVLCYLHDVKNTLQLHDLATGALL 372 (430)
T ss_dssp CTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEE-------EEEEEE-----TTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CcccccceeEEecCCCCccccceEEecccCccee-------eeEEEE-----ECCEEEEEEEcCCEeEEEEEECCCCcEE
Confidence 874456789988876542 34444321 1110 001111 5678888888999999999999999887
Q ss_pred EeccC-CCceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 395 LLDIP-FTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 395 ~lt~~-~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+..+ ...+..+ ..++..+++..++..+|..+|.+|+++++.
T Consensus 373 ~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 373 KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 77554 3445544 244567888899999999999999999875
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.21 E-value=1.6e-09 Score=107.73 Aligned_cols=237 Identities=11% Similarity=0.041 Sum_probs=142.5
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
+++++..+++....++.|.++|+.+ ++.. .+... .......|++||+.+++..... ..+.+++.
T Consensus 39 ~spdG~~l~v~~~~~~~i~v~d~~t--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 103 (301)
T d1l0qa2 39 ISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS--------STLSVIDT 103 (301)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT--------TEEEEEET
T ss_pred EeCCCCEEEEEECCCCEEEEEECCC--Cceeeeeecc-----cccccccccccccccccccccc--------ceeeeccc
Confidence 3334456777777778999999987 4433 33322 2235567999999876654432 57788898
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
.+++ ...............++|||+.+++.... ...+.+.+.. +++. ...+... ..+....|
T Consensus 104 ~~~~---~~~~~~~~~~~~~~~~~~dg~~~~~~~~~-------~~~~~~~~~~-~~~~--~~~~~~~-----~~~~~~~~ 165 (301)
T d1l0qa2 104 TSNT---VAGTVKTGKSPLGLALSPDGKKLYVTNNG-------DKTVSVINTV-TKAV--INTVSVG-----RSPKGIAV 165 (301)
T ss_dssp TTTE---EEEEEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETT-TTEE--EEEEECC-----SSEEEEEE
T ss_pred ccce---eeeeccccccceEEEeecCCCeeeeeecc-------ccceeeeecc-ccce--eeecccC-----CCceEEEe
Confidence 8876 44444444445567899999998776522 2347778876 5544 3333333 34567789
Q ss_pred CCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 309 spDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
+||++.++.+.. +...+...+....+............. ..+.+ +++.+++.........|+++|+
T Consensus 166 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~g~~~~v~~~~~~~~~v~v~D~ 231 (301)
T d1l0qa2 166 TPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSG---------IAVNP---EGTKAYVTNVDKYFNTVSMIDT 231 (301)
T ss_dssp CTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEE---------EEECT---TSSEEEEEEECSSCCEEEEEET
T ss_pred eccccceeeecc--cccccccccccceeeeecccccCCcce---------eeccc---cccccccccccceeeeeeeeec
Confidence 999994445544 223344455555554443322211111 22332 6777776665555567889999
Q ss_pred CCCceEE-eccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 389 FGHSLSL-LDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 389 ~~~~~~~-lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+++... +..+ ..+..+ ..++++.+|++.+.+ ..|.++|++++++
T Consensus 232 ~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~--~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 232 GTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFC--NTVSVIDTATNTI 278 (301)
T ss_dssp TTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEE
T ss_pred CCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCC--CeEEEEECCCCeE
Confidence 8887543 4333 345555 445555555554433 4788999998864
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=99.16 E-value=5.8e-10 Score=112.87 Aligned_cols=216 Identities=18% Similarity=0.197 Sum_probs=131.7
Q ss_pred CCCCEEEEEcCCCCCccCC----------c-ccH---HHHHHHHCCCEEEEEcCCCCCCC--ChhhHHhh-----ccCCC
Q 004735 493 EKPPLLVKSHGGPTSEARG----------I-LNL---SIQYWTSRGWAFVDVNYGGSTGY--GREFRERL-----LGRWG 551 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~----------~-~~~---~~~~l~~~G~~v~~~d~rG~~g~--g~~~~~~~-----~~~~~ 551 (732)
.+-++||++|+..+..... . |.. .-..+-..-|-|+++|.-|++.. |....... ...+.
T Consensus 40 ~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~~~ss~~~s~~p~~~~~yg~~fP 119 (362)
T d2pl5a1 40 SKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFP 119 (362)
T ss_dssp TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSC
T ss_pred CCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCcccccCccccccccccccCcCCc
Confidence 3458999999964442211 1 111 11233445699999999885432 11111111 11234
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH-----------Hhhcc
Q 004735 552 IVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML-----------RAETH 618 (732)
Q Consensus 552 ~~~~~D~~~~i~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~-----------~~~~~ 618 (732)
...+.|++++-..|+++..+ +|+. ++|.||||+.|+..+. ||+.++.+|++++....... .....
T Consensus 120 ~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp 197 (362)
T d2pl5a1 120 FVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDP 197 (362)
T ss_dssp CCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTST
T ss_pred cchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCHHHHHHHHHHHHHHhcCC
Confidence 56799999998888887655 4565 8899999999999888 99999999999875311000 00000
Q ss_pred hh--------------------------hhhhhhhhcC-------------Chhhhh-----------------------
Q 004735 619 KF--------------------------ESRYIDNLVG-------------SEKDYY----------------------- 636 (732)
Q Consensus 619 ~~--------------------------~~~~~~~~~~-------------~~~~~~----------------------- 636 (732)
.+ ...++...+. ..+.|.
T Consensus 198 ~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~ 277 (362)
T d2pl5a1 198 NWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKAL 277 (362)
T ss_dssp TCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHH
T ss_pred ccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHHHHhcCCHHHHHHHHhhh
Confidence 00 0000000000 001111
Q ss_pred -hcCcc------ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC-CCccCCCcccHHHHHHHHHH
Q 004735 637 -EKSPI------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG-EQHGFRKAENIKFTLEQQMV 708 (732)
Q Consensus 637 -~~sp~------~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~ 708 (732)
..++. ..+++|++|+|+|..+.|..+|+++.+++++.|+..++++++++++. .||.-.-. ...++.+.+.+
T Consensus 278 ~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~~l~~a~~~v~~~eI~S~~GHdaFL~-e~~~~~~~I~~ 356 (362)
T d2pl5a1 278 DHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEGHDSFLL-KNPKQIEILKG 356 (362)
T ss_dssp HHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBSSGGGGS-CCHHHHHHHHH
T ss_pred hcccccccccHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhcc-CHHHHHHHHHH
Confidence 01111 11678999999999999999999999999999999999999998874 67842111 22455556666
Q ss_pred HHH
Q 004735 709 FFA 711 (732)
Q Consensus 709 fl~ 711 (732)
||+
T Consensus 357 FL~ 359 (362)
T d2pl5a1 357 FLE 359 (362)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=99.14 E-value=1.1e-10 Score=112.04 Aligned_cols=188 Identities=12% Similarity=0.007 Sum_probs=103.9
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
+..+.||++||..+ ....|..+++.| .+|.|+.+|++|.+ ..++++.+.+..+. .
T Consensus 15 ~~~~~l~~lhg~~g--~~~~~~~la~~L--~~~~v~~~~~~g~~----------------~~a~~~~~~i~~~~-----~ 69 (230)
T d1jmkc_ 15 DQEQIIFAFPPVLG--YGLMYQNLSSRL--PSYKLCAFDFIEEE----------------DRLDRYADLIQKLQ-----P 69 (230)
T ss_dssp TCSEEEEEECCTTC--CGGGGHHHHHHC--TTEEEEEECCCCST----------------THHHHHHHHHHHHC-----C
T ss_pred CCCCeEEEEcCCCC--CHHHHHHHHHHC--CCCEEeccCcCCHH----------------HHHHHHHHHHHHhC-----C
Confidence 34589999999844 346677777777 37999999998542 12455655555442 2
Q ss_pred CCcEEEEEcChHHHHHHHHHh-C---CCcceEEEeecCcCCH--HHHHhhcchhhhhhhhhhcC------C---------
Q 004735 573 EKRLCITGGSAGGYTTLAALA-F---RDTFKAGASLYGVADL--SMLRAETHKFESRYIDNLVG------S--------- 631 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~---p~~~~a~v~~~~~~d~--~~~~~~~~~~~~~~~~~~~~------~--------- 631 (732)
..++.|+|||+||.+++.++. + ...+..++...+.... ..............+..... .
T Consensus 70 ~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (230)
T d1jmkc_ 70 EGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHGLKQ 149 (230)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGSHHHHHHHHH
T ss_pred CCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhccccccccccHHHHHHHHH
Confidence 367999999999999998886 4 4445555544432110 00000000000000000000 0
Q ss_pred --hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC-CCcccHHHHHHHHHH
Q 004735 632 --EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF-RKAENIKFTLEQQMV 708 (732)
Q Consensus 632 --~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~-~~~~~~~~~~~~~~~ 708 (732)
...+..........++++|+++++|++|..++... ..+.+ ....+++++.+++ +|.. ...++.+++.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~~~~-~~w~~---~~~~~~~~~~i~g-~H~~ml~~~~~~~va~~I~~ 224 (230)
T d1jmkc_ 150 KTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWL-ASWEE---ATTGAYRMKRGFG-THAEMLQGETLDRNAGILLE 224 (230)
T ss_dssp HHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCTTE-ECSGG---GBSSCEEEEECSS-CGGGTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccccCcceeeeecCCcccchhH-HHHHH---hccCCcEEEEEcC-CChhhcCCccHHHHHHHHHH
Confidence 01111112223456788999999999999887532 11111 1223678989985 8973 232333444444444
Q ss_pred HH
Q 004735 709 FF 710 (732)
Q Consensus 709 fl 710 (732)
||
T Consensus 225 ~L 226 (230)
T d1jmkc_ 225 FL 226 (230)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.13 E-value=1.4e-11 Score=122.68 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=82.1
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEe-ecCcCCHHHHHhhcchhhhhhhhhhcC-------Chhhhhh
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS-LYGVADLSMLRAETHKFESRYIDNLVG-------SEKDYYE 637 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~-~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 637 (732)
.++.+|++||+|+|+|+||++++.++. +|++|++++. +++...... . .... ...+..... ..+.+..
T Consensus 4 p~y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca-~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (318)
T d2d81a1 4 PAFNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCA-R-NQYY--TSCMYNGYPSITTPTANMKSWSG 79 (318)
T ss_dssp CCCCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTT-S-SSCG--GGGSTTCCCCCHHHHHHHHHHBT
T ss_pred hhcCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhh-c-ccch--HHHhhcCCCCCcChhHHHHHHhh
Confidence 346789999999999999999998887 9999975443 333211000 0 0000 000000000 0122222
Q ss_pred cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCC--CEEEEEeCCCCccCC
Q 004735 638 KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGL--PVALVEYEGEQHGFR 694 (732)
Q Consensus 638 ~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~--~~~~~~~~~~gH~~~ 694 (732)
.++.........|++|+||++|.+|++.++.+++++|++.+. +++++..++++|+|.
T Consensus 80 ~~i~~~~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fp 138 (318)
T d2d81a1 80 NQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFP 138 (318)
T ss_dssp TTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEE
T ss_pred cCCcchhccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCC
Confidence 233333333457999999999999999999999999998754 689999999999873
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.12 E-value=5.2e-11 Score=118.43 Aligned_cols=209 Identities=12% Similarity=0.051 Sum_probs=119.1
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHH-HHHHHhcCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGK 570 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~ 570 (732)
....|.++++||...+.....|..++..|.. ++.|+++|++|.+..... .......+++++.+. ++.+...
T Consensus 57 ~~~~~~l~c~~~~~~~g~~~~y~~la~~L~~-~~~V~al~~pG~~~~~~~-----~~~~~~~s~~~~a~~~~~~i~~~-- 128 (283)
T d2h7xa1 57 AEGRAVLVGCTGTAANGGPHEFLRLSTSFQE-ERDFLAVPLPGYGTGTGT-----GTALLPADLDTALDAQARAILRA-- 128 (283)
T ss_dssp -CCCCEEEEECCCCTTCSTTTTHHHHHTTTT-TCCEEEECCTTCCBC--------CBCCEESSHHHHHHHHHHHHHHH--
T ss_pred CCCCceEEEeCCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCCCCCCCCC-----ccccccCCHHHHHHHHHHHHHHh--
Confidence 3456889999985334445566667776654 689999999875432211 111111234454443 3344433
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-----CCCcceEEEeecCcCCHHHHHhh--cchhhhhhhhhhcC--Chh------hh
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-----FRDTFKAGASLYGVADLSMLRAE--THKFESRYIDNLVG--SEK------DY 635 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-----~p~~~~a~v~~~~~~d~~~~~~~--~~~~~~~~~~~~~~--~~~------~~ 635 (732)
....+++|+|||+||.+++.++. ++..+.+++++.+.......... .............. +.. .+
T Consensus 129 ~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~ 208 (283)
T d2h7xa1 129 AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRY 208 (283)
T ss_dssp HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHHHHHHHH
Confidence 12467999999999999988875 35678888888764321111000 00000000000000 100 11
Q ss_pred hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 636 YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 636 ~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
...........+++|+++++|++|..++......+.+.+ ...++++.+++ +|.....+....+.+.+.+||+.
T Consensus 209 ~~~~~~~~~~~~~~Pvl~i~g~~d~~~~~~~~~~w~~~~---~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~~L~~ 281 (283)
T d2h7xa1 209 ARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAHW---DLPHTVADVPG-DHFTMMRDHAPAVAEAVLSWLDA 281 (283)
T ss_dssp HHHHHSCCCCCCCSCEEEEEESSCSSCCCGGGCCCSCCC---SSCSEEEEESS-CTTHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCeEEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEEEcC-CCcccccCCHHHHHHHHHHHHHh
Confidence 111112234678899999999999988876554432221 23568889987 78533335677778888899875
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.08 E-value=1.9e-08 Score=101.45 Aligned_cols=261 Identities=13% Similarity=0.103 Sum_probs=147.7
Q ss_pred cCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCccc-CCCCCcccccccccCCceeEEECC-EEEEEeCC-
Q 004735 87 ASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYK- 163 (732)
Q Consensus 87 ~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l-~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~- 163 (732)
.+..++++.|++.+.|||++... + .|++++++++ ..... .+... +...++++.+ ++++....
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~---g--~I~ri~p~g~-~~~~~~~~~~~---------~p~gla~~~dG~l~va~~~~ 102 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFE---G--NIFKINPETK-EIKRPFVSHKA---------NPAAIKIHKDGRLFVCYLGD 102 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTT---C--EEEEECTTTC-CEEEEEECSSS---------SEEEEEECTTSCEEEEECTT
T ss_pred CCcCcEeCEECCCCCEEEEECCC---C--EEEEEECCCC-eEEEEEeCCCC---------CeeEEEECCCCCEEEEecCC
Confidence 34567999999944599998743 4 4788877633 22222 22110 1122344433 55555432
Q ss_pred ---CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc
Q 004735 164 ---DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (732)
Q Consensus 164 ---~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt 240 (732)
...++.++..+ +....+..... ...+.++..++|+|+. ++...... . ......+|+++.+++. .+.+.
T Consensus 103 ~~~~~~i~~~~~~~--~~~~~~~~~~~-~~~~~nd~~~d~~G~l-~vtd~~~~-~-~~~~g~v~~~~~dg~~---~~~~~ 173 (319)
T d2dg1a1 103 FKSTGGIFAATENG--DNLQDIIEDLS-TAYCIDDMVFDSKGGF-YFTDFRGY-S-TNPLGGVYYVSPDFRT---VTPII 173 (319)
T ss_dssp SSSCCEEEEECTTS--CSCEEEECSSS-SCCCEEEEEECTTSCE-EEEECCCB-T-TBCCEEEEEECTTSCC---EEEEE
T ss_pred CccceeEEEEcCCC--ceeeeeccCCC-cccCCcceeEEeccce-eecccccc-c-ccCcceeEEEecccce---eEEEe
Confidence 24688888776 55444432211 2356688899999983 44322211 1 1124789999998877 67766
Q ss_pred cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee---EEecCCCCCccccCcCceeCCCCcEEEE
Q 004735 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR---VCVAGFDPTIVESPTEPKWSSKGELFFV 317 (732)
Q Consensus 241 ~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~---~~~~~~~~~~~~~~~~~~wspDg~l~~~ 317 (732)
.+-..-++..|||||++|++.... ..+|++++++.+|..... ......... ..+..++..+||+||+.
T Consensus 174 ~~~~~pnGia~s~dg~~lyvad~~-------~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~--~~PdGl~vD~~G~l~Va 244 (319)
T d2dg1a1 174 QNISVANGIALSTDEKVLWVTETT-------ANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVA 244 (319)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGG-------GTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEE
T ss_pred eccceeeeeeeccccceEEEeccc-------CCceEEEEEcCCCceeccccceeeeccCCc--cceeeeeEcCCCCEEEE
Confidence 555556778999999999777532 456999998755543211 111111000 33557788899986654
Q ss_pred EeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEE---CCEEEEEEEECCC
Q 004735 318 TDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ---NGRSYLGILDDFG 390 (732)
Q Consensus 318 ~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~---~g~~~ly~~~~~~ 390 (732)
. . +...|.++++++.....|. +.. ..... .....+.|.+ +...++.++.. .+...||+++...
T Consensus 245 ~-~--~~g~V~~~~p~G~~l~~i~~P~~-~~~~~---~~~~~~~~~~---~~~~~~~t~~~~~~~~~g~l~~~~~~~ 311 (319)
T d2dg1a1 245 M-Y--GQGRVLVFNKRGYPIGQILIPGR-DEGHM---LRSTHPQFIP---GTNQLIICSNDIEMGGGSMLYTVNGFA 311 (319)
T ss_dssp E-E--TTTEEEEECTTSCEEEEEECTTG-GGTCS---CBCCEEEECT---TSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred E-c--CCCEEEEECCCCcEEEEEeCCCc-CCCcC---ceeeeEEEeC---CCCEEEEEcCCCCcCCceeEEEEeCCC
Confidence 3 3 3356899998765555553 221 11111 1112334432 44566666542 3456788887644
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=5e-09 Score=105.80 Aligned_cols=265 Identities=10% Similarity=0.041 Sum_probs=140.2
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
+|++++..|++....++.|.+++++.++...+...... ........+|||||++|+...... ..+..++.
T Consensus 43 a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~--~~~~p~~l~~spDg~~l~v~~~~~--------~~v~~~~~ 112 (333)
T d1ri6a_ 43 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LPGSLTHISTDHQGQFVFVGSYNA--------GNVSVTRL 112 (333)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CSSCCSEEEECTTSSEEEEEETTT--------TEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc--cCCCceEEEEcCCCCEEeecccCC--------Cceeeecc
Confidence 34445557777776677787777764213333322110 011224578999999966554322 35555555
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeE--EecCCCCCccccCcCc
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV--CVAGFDPTIVESPTEP 306 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~--~~~~~~~~~~~~~~~~ 306 (732)
+.....................+||||++++..... ...+.+++...++...... ...... . ..+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~-g--~~p~~i 182 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-------QDRICLFTVSDDGHLVAQDPAEVTTVE-G--AGPRHM 182 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEEEECST-T--CCEEEE
T ss_pred ccccceecccccCCCccceEEEeeecceeeeccccc-------cceeeEEEeccCCcceeeeceeeeeec-C--CCccEE
Confidence 544310012222333344567899999988776632 3447888876333221111 111111 1 234567
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE---ecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA---IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~---l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~l 383 (732)
.|++++..++......+...++.++......+. +...........+ .....+.+ +++.++......+...+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~---d~~~~~~~~~~~~~~~~ 256 (333)
T d1ri6a_ 183 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW---AADIHITP---DGRHLYACDRTASLITV 256 (333)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC---EEEEEECT---TSSEEEEEETTTTEEEE
T ss_pred EEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc---ceeEEEec---ccCceeeecccCCeEEE
Confidence 899999844444442566667766655543322 1111111111111 11223332 67777766666677888
Q ss_pred EEEECCCCceEEecc--CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 384 GILDDFGHSLSLLDI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 384 y~~~~~~~~~~~lt~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
|.++.+++..+.... .......+ .+++++.+|++...+..-.+|.+|.++|+++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp EEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred EEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEE
Confidence 888877665543321 22223334 345566666666555556689999999987654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.07 E-value=1.1e-08 Score=101.57 Aligned_cols=229 Identities=11% Similarity=0.063 Sum_probs=133.1
Q ss_pred EEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
++.+..++.|.++|+++ ++. +.+..+ ......+|||||++|+...... ..|.++|+.+++ .
T Consensus 5 yV~~~~~~~v~v~D~~t--~~~~~~i~~g-----~~p~~va~spdG~~l~v~~~~~--------~~i~v~d~~t~~---~ 66 (301)
T d1l0qa2 5 YIANSESDNISVIDVTS--NKVTATIPVG-----SNPMGAVISPDGTKVYVANAHS--------NDVSIIDTATNN---V 66 (301)
T ss_dssp EEEETTTTEEEEEETTT--TEEEEEEECS-----SSEEEEEECTTSSEEEEEEGGG--------TEEEEEETTTTE---E
T ss_pred EEEECCCCEEEEEECCC--CeEEEEEECC-----CCceEEEEeCCCCEEEEEECCC--------CEEEEEECCCCc---e
Confidence 44556677899999987 543 333322 1224578999999975544322 589999999887 4
Q ss_pred EEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EE
Q 004735 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 315 (732)
Q Consensus 237 ~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~ 315 (732)
..............|++||+.++..... ...+.+.+.. +++. ...+... .......++|||+ ++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~--~~~~~~~-----~~~~~~~~~~dg~~~~ 131 (301)
T d1l0qa2 67 IATVPAGSSPQGVAVSPDGKQVYVTNMA-------SSTLSVIDTT-SNTV--AGTVKTG-----KSPLGLALSPDGKKLY 131 (301)
T ss_dssp EEEEECSSSEEEEEECTTSSEEEEEETT-------TTEEEEEETT-TTEE--EEEEECS-----SSEEEEEECTTSSEEE
T ss_pred eeeeeccccccccccccccccccccccc-------cceeeecccc-ccee--eeecccc-----ccceEEEeecCCCeee
Confidence 3333333334567899999988765522 3457888887 6654 3333333 3345678999999 55
Q ss_pred EEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEE
Q 004735 316 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 395 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~ 395 (732)
+.... ...+..++..+++......... .+. .+.+.+ +++.+++.....+. ++..+....+...
T Consensus 132 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 194 (301)
T d1l0qa2 132 VTNNG---DKTVSVINTVTKAVINTVSVGR---SPK------GIAVTP---DGTKVYVANFDSMS--ISVIDTVTNSVID 194 (301)
T ss_dssp EEETT---TTEEEEEETTTTEEEEEEECCS---SEE------EEEECT---TSSEEEEEETTTTE--EEEEETTTTEEEE
T ss_pred eeecc---ccceeeeeccccceeeecccCC---Cce------EEEeec---cccceeeecccccc--cccccccceeeee
Confidence 44433 2346667777776554433221 111 122322 66666655443333 4444555555544
Q ss_pred eccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 396 LDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 396 lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..........+ ...++..+++.........|+++|+.+++.
T Consensus 195 ~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 195 TVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp EEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred cccccCCcceeeccccccccccccccceeeeeeeeecCCCeE
Confidence 33333333343 334444445555455556799999988764
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=99.06 E-value=6e-10 Score=113.38 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCCCCccCCcc-cH---HHHHHHHCCCEEEEEcCCCCCCC--ChhhHHh-------hccCCCcccHHHHH
Q 004735 493 EKPPLLVKSHGGPTSEARGIL-NL---SIQYWTSRGWAFVDVNYGGSTGY--GREFRER-------LLGRWGIVDVNDCC 559 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~-~~---~~~~l~~~G~~v~~~d~rG~~g~--g~~~~~~-------~~~~~~~~~~~D~~ 559 (732)
.+-++||++|+..++.....| .. .-+.+-..-|-|+++|..|++.. |...... ...++...++.|.+
T Consensus 42 ~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~~gst~p~s~~p~~~~~~~yg~~FP~~ti~D~v 121 (376)
T d2vata1 42 SRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDV 121 (376)
T ss_dssp TSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHH
T ss_pred CCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCCcCCCCCCCCCcccccCCcccccCCcchhHHHH
Confidence 446899999997554443332 11 11334445699999999886421 1111110 01234556789999
Q ss_pred HHHHHHHhcCCCCCCcE-EEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 560 SCATFLVGSGKADEKRL-CITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 560 ~~i~~l~~~~~~d~~ri-~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
.+-..|+++..+ +|+ +++|.||||+.|+..+. +|++++.+|++++..
T Consensus 122 ~aq~~ll~~LGI--~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~~ 170 (376)
T d2vata1 122 RIHRQVLDRLGV--RQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSC 170 (376)
T ss_dssp HHHHHHHHHHTC--CCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCS
T ss_pred HHHHHHHHHhCc--ceEEEeecccHHHHHHHHHHHhchHHHhhhccccccc
Confidence 998888777544 576 68999999999999998 999999999887653
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.96 E-value=7.6e-08 Score=96.49 Aligned_cols=237 Identities=8% Similarity=-0.006 Sum_probs=137.8
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
+.++++.+++.. ++.++++++++. ...+.++.. ........|||||++|+.... + ..|.++|+.
T Consensus 25 ~~~~g~~l~~~~--~~~v~i~~~~~~-~~~~~~~~H----~~~v~~~~~sp~g~~latg~~-d--------g~i~iwd~~ 88 (311)
T d1nr0a1 25 NTPAGDKIQYCN--GTSVYTVPVGSL-TDTEIYTEH----SHQTTVAKTSPSGYYCASGDV-H--------GNVRIWDTT 88 (311)
T ss_dssp ECTTSSEEEEEE--TTEEEEEETTCS-SCCEEECCC----SSCEEEEEECTTSSEEEEEET-T--------SEEEEEESS
T ss_pred EcCCCCEEEEEe--CCEEEEEECCCC-ceeEEEcCC----CCCEEEEEEeCCCCeEecccc-C--------ceEeeeeee
Confidence 444566788774 456999999862 334445543 345677789999998654443 2 478888988
Q ss_pred CCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 230 ~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
+++......+......+....|||||+.|+..+.+.. ..+.+++++ .++. ...+.+.. ..+..+.|+
T Consensus 89 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~------~~~~v~~~~-~~~~--~~~l~~h~----~~v~~v~~~ 155 (311)
T d1nr0a1 89 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE------RFGHVFLFD-TGTS--NGNLTGQA----RAMNSVDFK 155 (311)
T ss_dssp STTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS------CSEEEEETT-TCCB--CBCCCCCS----SCEEEEEEC
T ss_pred ccccccccccccccCcccccccccccccccccccccc------ccccccccc-cccc--cccccccc----ccccccccc
Confidence 7651001223333445667899999999987763332 226677777 5654 23334433 456678899
Q ss_pred CCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 310 pDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
|||+ ++.+... .+ .|.++|..+++....... ...+.. +.+.+ +++.+ ++...++.-.|| +
T Consensus 156 ~~~~~~l~sgs~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~---------v~~~p---~~~~l-~~~~~d~~v~~~--d 217 (311)
T d1nr0a1 156 PSRPFRIISGSD-DN--TVAIFEGPPFKFKSTFGEHTKFVHS---------VRYNP---DGSLF-ASTGGDGTIVLY--N 217 (311)
T ss_dssp SSSSCEEEEEET-TS--CEEEEETTTBEEEEEECCCSSCEEE---------EEECT---TSSEE-EEEETTSCEEEE--E
T ss_pred ccceeeeccccc-cc--ccccccccccccccccccccccccc---------cccCc---ccccc-cccccccccccc--c
Confidence 9998 5554443 34 366678888765544322 222222 23332 55544 445556655555 5
Q ss_pred CCCCceE-EeccC-------CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 388 DFGHSLS-LLDIP-------FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 388 ~~~~~~~-~lt~~-------~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
...+... .+... ...|..+ ..+++++++.++.. ..|+++|+.+++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D---g~v~iwd~~t~~~ 272 (311)
T d1nr0a1 218 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD---KTIKIWNVATLKV 272 (311)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTEE
T ss_pred cccccccccccccccccccccccccccccCCCCCEEEEEeCC---CeEEEEECCCCcE
Confidence 5555432 22211 2346666 34455566655533 3688889888764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.8e-07 Score=94.64 Aligned_cols=267 Identities=8% Similarity=-0.010 Sum_probs=151.5
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~ 166 (732)
..+.+++++| |+.++- -. +|...+|..... +....+.. .....+...+.+.+++++ ..+++...++.
T Consensus 52 ~~V~~v~fs~~g~~lat-g~----dg~V~iWd~~~~--~~~~~~~~----~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYT-GG----KGCVKVWDISHP--GNKSPVSQ----LDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp SCCCEEEECSSSSEEEE-EC----BSEEEEEETTST--TCCSCSEE----EECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred CcEEEEEECCCCCEEEE-EE----CCEEEEEEccCC--cccceeEE----eeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence 4568899999 666553 21 366667765433 11111110 000012222345555543 44556667888
Q ss_pred EEEEeCCCCCCCcee---cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-C
Q 004735 167 LYKHSIDSKDSSPLP---ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-G 242 (732)
Q Consensus 167 l~~~d~~~~~~~~~~---lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~ 242 (732)
|.++|+.. ...+. +... ........|+|++..++....+ ..|.++++.+++ ...... .
T Consensus 121 i~iwd~~~--~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d---------~~i~~~~~~~~~---~~~~~~~~ 182 (337)
T d1gxra_ 121 LSIWDLAA--PTPRIKAELTSS----APACYALAISPDSKVCFSCCSD---------GNIAVWDLHNQT---LVRQFQGH 182 (337)
T ss_dssp EEEEECCC--C--EEEEEEECS----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTE---EEEEECCC
T ss_pred cccccccc--cccccccccccc----cccccccccccccccccccccc---------cccccccccccc---cccccccc
Confidence 99999875 33322 2222 2234556799999986554432 468888988876 444433 2
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~ 322 (732)
........|+|||+.++... ....+.++|+. +++. +...... ..+..+.|+|+++++++... .
T Consensus 183 ~~~v~~l~~s~~~~~~~~~~--------~d~~v~i~d~~-~~~~--~~~~~~~-----~~i~~l~~~~~~~~l~~~~~-d 245 (337)
T d1gxra_ 183 TDGASCIDISNDGTKLWTGG--------LDNTVRSWDLR-EGRQ--LQQHDFT-----SQIFSLGYCPTGEWLAVGME-S 245 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEE--------TTSEEEEEETT-TTEE--EEEEECS-----SCEEEEEECTTSSEEEEEET-T
T ss_pred cccccccccccccccccccc--------ccccccccccc-ccee--ecccccc-----cceEEEEEcccccccceecc-c
Confidence 34456678999999988765 23458899988 6654 3333332 44667889999994444444 3
Q ss_pred CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCc
Q 004735 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD 402 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~ 402 (732)
+. +..+|..+++..........+.. +.|.+ +++.| ++...++. |++++..+++..........
T Consensus 246 ~~--i~i~d~~~~~~~~~~~~~~~i~~---------v~~s~---~g~~l-~s~s~Dg~--i~iwd~~~~~~~~~~~~~~~ 308 (337)
T d1gxra_ 246 SN--VEVLHVNKPDKYQLHLHESCVLS---------LKFAY---CGKWF-VSTGKDNL--LNAWRTPYGASIFQSKESSS 308 (337)
T ss_dssp SC--EEEEETTSSCEEEECCCSSCEEE---------EEECT---TSSEE-EEEETTSE--EEEEETTTCCEEEEEECSSC
T ss_pred cc--cccccccccccccccccccccce---------EEECC---CCCEE-EEEeCCCe--EEEEECCCCCEEEEccCCCC
Confidence 43 56667777665544333222222 33432 55544 45555665 44557777776555455566
Q ss_pred eEEe-eEeCCEEEEEEe
Q 004735 403 IDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 403 v~~~-~~~~~~~~~~~~ 418 (732)
+..+ ..+++++++.++
T Consensus 309 v~~~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 309 VLSCDISVDDKYIVTGS 325 (337)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEe
Confidence 7776 445555555544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.93 E-value=4.6e-07 Score=92.78 Aligned_cols=303 Identities=9% Similarity=-0.049 Sum_probs=151.1
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCC-------
Q 004735 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK------- 163 (732)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~------- 163 (732)
..+.++| |+++|...... ..+...+|..+.++| +...-++.... ....|++++..+++....
T Consensus 24 ~~~a~spdg~~~~~~~~~~-~~~~~~v~v~D~~tg-~~~~~~~~~~~--------~~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAH-HSAIIQQWVLDAGSG-SILGHVNGGFL--------PNPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred cccccCCCCCEEEEEcccc-cCCCceEEEEECCCC-CEEEEEeCCCC--------ccEEEcCCCCEEEEEeecCCccccc
Confidence 4667889 89887765432 234456777777655 32222222200 124566666677776532
Q ss_pred --CCeEEEEeCCCCCCCceecCCCCCCCCeE----eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE
Q 004735 164 --DQRLYKHSIDSKDSSPLPITPDYGEPLVS----YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (732)
Q Consensus 164 --~~~l~~~d~~~~~~~~~~lt~~~~~~~~~----~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 237 (732)
++.|.++|+.+ ++.......+...... .....|+|||+.+++...+.. ..+.+++..+++ ..
T Consensus 94 ~~~~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~-------~~~~~~~~~~~~---~~ 161 (373)
T d2madh_ 94 KRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG-------PAVGLVVQGGSS---DD 161 (373)
T ss_pred ccceEEEEEECCC--CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC-------CceEEeeccCCe---EE
Confidence 35689999987 5544332221111111 134679999998766654331 345566666554 32
Q ss_pred EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEE
Q 004735 238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (732)
Q Consensus 238 ~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~ 317 (732)
.... ......++|||+.+++... . ...+.+++.. +++......................+++++.+++.
T Consensus 162 ~~~~---~~~~~~~s~~g~~~~v~~~-~------dg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (373)
T d2madh_ 162 QLLS---SPTCYHIHPGAPSTFYLLC-A------QGGLAKTDHA-GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP 230 (373)
T ss_pred EEec---cceeEEEecCCCcEEEEEc-C------CCeEEEEEcC-CceeeEEEeeeccccCccceeeeEEECCCceEEEe
Confidence 2221 1234678999998765542 2 2348888887 56543222211110000012223455666554443
Q ss_pred EeccCCeeeEEEEeccCCeEEEeccccc---ccCCCceeecc-cceeeeeecCCCCEEEEEEEEC-------CEEEEEEE
Q 004735 318 TDRKNGFWNLHKWIESNNEVLAIYSLDA---EFSRPLWVFGI-NSYEIIQSHGEKNLIACSYRQN-------GRSYLGIL 386 (732)
Q Consensus 318 ~~~~~g~~~l~~~d~~~g~~~~l~~~~~---~~~~~~w~~~~-~~~~~~~~~~~~~~l~~~s~~~-------g~~~ly~~ 386 (732)
... ..++.++..++....+..... ......|.+.. ..+.+.+ ++..+++..... ....++++
T Consensus 231 ~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~v~~~ 303 (373)
T d2madh_ 231 VYS----GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK---SSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred cCC----ceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec---CCCeEEEecCCCceEEeecCCCeEEEE
Confidence 322 234455555544332221100 00111122111 1122222 455555443221 22457888
Q ss_pred ECCCCceEEeccCCCceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 387 DDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 387 ~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+..+++..........+..+ +.+++.++|...+.+ ..|+++|+++++.
T Consensus 304 d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~~ 353 (373)
T d2madh_ 304 TGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQ 353 (373)
T ss_pred ECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCE
Confidence 88887754333333344455 445556666555433 4699999999874
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.92 E-value=8.4e-09 Score=102.17 Aligned_cols=160 Identities=14% Similarity=0.061 Sum_probs=98.0
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
..+| ||++||.........+..++++|+++||.|+.+|++|.+. ...+ ...+++.+.++++.++..
T Consensus 30 ~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~g~---~d~~--------~sae~la~~i~~v~~~~g-- 95 (317)
T d1tcaa_ 30 VSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFML---NDTQ--------VNTEYMVNAITALYAGSG-- 95 (317)
T ss_dssp CSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTTTC---SCHH--------HHHHHHHHHHHHHHHHTT--
T ss_pred CCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCCCC---CchH--------hHHHHHHHHHHHHHHhcc--
Confidence 3345 6789997544433335567889999999999999986432 1111 125678888999887743
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CC---CcceEEEeecCcCCHHHHHhh---cchhhhhhhhhhcCCh--hhhhhcCcccc
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVADLSMLRAE---THKFESRYIDNLVGSE--KDYYEKSPINF 643 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p---~~~~a~v~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~sp~~~ 643 (732)
.++|.|+|||+||.++.+++. +| ++++.+|.+++...-..+... .........+...+.. +.+....
T Consensus 96 ~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~~Gt~~a~~~~~~~~~~pa~~q~~~~s~fl~~L~~~~---- 171 (317)
T d1tcaa_ 96 NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDALAVSAPSVWQQTTGSALTTALRNAG---- 171 (317)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHHTTCBCHHHHHTBTTCHHHHHHHHTT----
T ss_pred CCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCCCCcccccchhhhhccCchhhhhcCCcHHHHHHHhCC----
Confidence 468999999999999999988 66 568999988886532221110 0000000111111110 1111110
Q ss_pred CCCCCCCEEEEEeCCCCccChHHHHHH
Q 004735 644 VDKFSCPIILFQGLEDKVVPPDQARKI 670 (732)
Q Consensus 644 ~~~i~~P~Lii~G~~D~~v~~~~~~~~ 670 (732)
...-.+|...|++..|.+|.+.++..+
T Consensus 172 ~~~~~V~~t~I~s~~D~iV~P~~~~~~ 198 (317)
T d1tcaa_ 172 GLTQIVPTTNLYSATDEIVQPQVSNSP 198 (317)
T ss_dssp TTBCSSCEEEEECTTCSSSCCCCSSST
T ss_pred CCCCCCCEEEEecCCCcccCccccchh
Confidence 011137899999999999988655433
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.89 E-value=7.4e-08 Score=99.08 Aligned_cols=247 Identities=5% Similarity=-0.142 Sum_probs=132.9
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCC-CCCCceeEEEEEEcCCCCccccEEcc---
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ-DALNSTTEIVAIALNGQNIQEPKVLV--- 240 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~lt--- 240 (732)
.+||++|.++ ++....+.... ...+.|||||+.|++....... ........|.++|..+++ +....
T Consensus 46 ~~~~~~d~~~--~~~~~~~~~~~-----~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~---~~~~i~~p 115 (368)
T d1mdah_ 46 TENWVSCAGC--GVTLGHSLGAF-----LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL---PIADIELP 115 (368)
T ss_dssp EEEEEEETTT--TEEEEEEEECT-----TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC---EEEEEEET
T ss_pred ceEEEEeCCC--CcEEEEEeCCC-----CCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc---EeeeecCC
Confidence 3799999987 66554443311 1347899999997776532211 001113579999999887 43321
Q ss_pred cCCC-----ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC-CccccCcCceeCCCCc-
Q 004735 241 SGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGE- 313 (732)
Q Consensus 241 ~~~~-----~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDg~- 313 (732)
.... ......|||||++|++...+. ..++++|+. +++............ ........+.+++||+
T Consensus 116 ~~~~~~~g~~p~~~a~SpDGk~l~va~~~~-------~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~ 187 (368)
T d1mdah_ 116 DAPRFSVGPRVHIIGNCASSACLLFFLFGS-------SAAAGLSVP-GASDDQLTKSASCFHIHPGAAATHYLGSCPASL 187 (368)
T ss_dssp TSCSCCBSCCTTSEEECTTSSCEEEEECSS-------SCEEEEEET-TTEEEEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred ccceecccCCccceEECCCCCEEEEEeCCC-------CeEEEEECC-CCcEeEEeeccCcceEccCCCceEEEEcCCCCE
Confidence 1111 123468999999998765332 348889998 776533322222110 0001123345678888
Q ss_pred EEEEEeccCCe---------------------------------eeEEEEeccCCeEEEeccccc---ccCCCceeec-c
Q 004735 314 LFFVTDRKNGF---------------------------------WNLHKWIESNNEVLAIYSLDA---EFSRPLWVFG-I 356 (732)
Q Consensus 314 l~~~~~~~~g~---------------------------------~~l~~~d~~~g~~~~l~~~~~---~~~~~~w~~~-~ 356 (732)
+++.... .+. ..++.++..+++...+..... ......|.++ .
T Consensus 188 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 266 (368)
T d1mdah_ 188 AASDLAA-APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp EEEECCS-SCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred EEEEecC-CceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCc
Confidence 4443321 110 123444444444333321110 0011234432 2
Q ss_pred cceeeeeecCCCCEEEEEEEEC------CEEEEEEEECCCCceE-EeccCCCceEEe--eEeCCEEEEEEeCCCCCcEEE
Q 004735 357 NSYEIIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVA 427 (732)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~s~~~------g~~~ly~~~~~~~~~~-~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly 427 (732)
..+.+.+ +++.+|+..... +..+|+++|.++++.. .+.. ...+..+ +.+++.++|.....+ ..|+
T Consensus 267 ~~~a~~~---~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~--~~v~ 340 (368)
T d1mdah_ 267 QMVAKLK---NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGT--EVLD 340 (368)
T ss_dssp SCEEEET---TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTT--TEEE
T ss_pred eeEEEcC---CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCC--CeEE
Confidence 3344543 677777766543 3467999999988643 3332 2234344 445555666665433 4799
Q ss_pred EEEcCCCcc
Q 004735 428 KVTLDDHKL 436 (732)
Q Consensus 428 ~~dl~~~~~ 436 (732)
++|+.+++.
T Consensus 341 v~D~~tgk~ 349 (368)
T d1mdah_ 341 IYDAASDQD 349 (368)
T ss_dssp EEESSSCEE
T ss_pred EEECCCCCE
Confidence 999999874
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=2.3e-07 Score=93.85 Aligned_cols=246 Identities=10% Similarity=-0.000 Sum_probs=139.0
Q ss_pred ccCCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCC-CCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCcee
Q 004735 144 EYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITP-DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT 221 (732)
Q Consensus 144 ~~g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~-~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~ 221 (732)
...+.+..++++ +.+++. .++.|.++|+..+ .....+.. ....+.......+|+|||++|+....+ .
T Consensus 51 ~~~V~~v~fs~~g~~latg-~dg~V~iWd~~~~-~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d---------g 119 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTG-GKGCVKVWDISHP-GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA---------S 119 (337)
T ss_dssp SSCCCEEEECSSSSEEEEE-CBSEEEEEETTST-TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS---------S
T ss_pred CCcEEEEEECCCCCEEEEE-ECCEEEEEEccCC-cccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc---------c
Confidence 334555566644 344444 3678999999752 22222111 000112345678899999987655442 4
Q ss_pred EEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 222 ~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
.|.++|+..........+...........|+||+..|+... . ...+.++++. +++. ........ .
T Consensus 120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~-------d~~i~~~~~~-~~~~--~~~~~~~~----~ 184 (337)
T d1gxra_ 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-S-------DGNIAVWDLH-NQTL--VRQFQGHT----D 184 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-T-------TSCEEEEETT-TTEE--EEEECCCS----S
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-c-------cccccccccc-cccc--cccccccc----c
Confidence 78888887654100122333333455678999999887655 2 2338888987 6654 33334333 4
Q ss_pred cCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
.+..+.|+++++.++.... .+ .+..+|+.+++..........+. .+.|.+ +++.++ +...++..
T Consensus 185 ~v~~l~~s~~~~~~~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~i~---------~l~~~~---~~~~l~-~~~~d~~i 248 (337)
T d1gxra_ 185 GASCIDISNDGTKLWTGGL-DN--TVRSWDLREGRQLQQHDFTSQIF---------SLGYCP---TGEWLA-VGMESSNV 248 (337)
T ss_dssp CEEEEEECTTSSEEEEEET-TS--EEEEEETTTTEEEEEEECSSCEE---------EEEECT---TSSEEE-EEETTSCE
T ss_pred ccccccccccccccccccc-cc--cccccccccceeecccccccceE---------EEEEcc---cccccc-eecccccc
Confidence 5667889999984444443 34 46667887776443332221221 223332 555544 45556654
Q ss_pred EEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 382 YLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 382 ~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
. +++..+++..........+..+ ..+++++++.++.. ..|.++|+.+++.
T Consensus 249 ~--i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D---g~i~iwd~~~~~~ 299 (337)
T d1gxra_ 249 E--VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD---NLLNAWRTPYGAS 299 (337)
T ss_dssp E--EEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCE
T ss_pred c--cccccccccccccccccccceEEECCCCCEEEEEeCC---CeEEEEECCCCCE
Confidence 4 4577777766665556667777 44555565555433 3688888887764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=8.7e-07 Score=88.74 Aligned_cols=245 Identities=11% Similarity=0.007 Sum_probs=122.5
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecC--CCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPIT--PDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt--~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
.++++...++.|.+++++.. +..+.+. .. +.....++|||||++|++..... ..|.+++++.+..
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~-~~l~~~~~~~~----~~~v~~la~spDG~~L~v~~~~d--------~~i~~~~i~~~~~ 71 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHE-GALTLTQVVDV----PGQVQPMVVSPDKRYLYVGVRPE--------FRVLAYRIAPDDG 71 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTT-SCEEEEEEEEC----SSCCCCEEECTTSSEEEEEETTT--------TEEEEEEECTTTC
T ss_pred EEEEECCCCCcEEEEEEcCC-CCeEEEEEEcC----CCCEeEEEEeCCCCEEEEEECCC--------CeEEEEEEeCCCC
Confidence 34556656778888888652 4444332 22 12336778999999975544322 3555555554320
Q ss_pred cccEEcc--cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 234 QEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 234 ~~~~~lt--~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
. .+.+. ..........|||||++|+....+ ...+.+++.+ .+............ ..+..+.++||
T Consensus 72 ~-~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~-------~~~v~~~~~~-~~~~~~~~~~~~~~----~~~~~v~~s~d 138 (333)
T d1ri6a_ 72 A-LTFAAESALPGSLTHISTDHQGQFVFVGSYN-------AGNVSVTRLE-DGLPVGVVDVVEGL----DGCHSANISPD 138 (333)
T ss_dssp C-EEEEEEEECSSCCSEEEECTTSSEEEEEETT-------TTEEEEEEEE-TTEEEEEEEEECCC----TTBCCCEECTT
T ss_pred c-EEEeeecccCCCceEEEEcCCCCEEeecccC-------CCceeeeccc-cccceecccccCCC----ccceEEEeeec
Confidence 0 22322 112223457899999998766522 3346777766 44433333333332 45678899999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCe--EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNE--VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~--~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~ 389 (732)
|+.++..+..... +..++..+.. ........ ..... .....+.|.+ ++..++......+...++.++..
T Consensus 139 ~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~-~~~~g---~~p~~i~~~~---~~~~~~~~~~~~~~~~v~~~~~~ 209 (333)
T d1ri6a_ 139 NRTLWVPALKQDR--ICLFTVSDDGHLVAQDPAEV-TTVEG---AGPRHMVFHP---NEQYAYCVNELNSSVDVWELKDP 209 (333)
T ss_dssp SSEEEEEEGGGTE--EEEEEECTTSCEEEEEEEEE-ECSTT---CCEEEEEECT---TSSEEEEEETTTTEEEEEESSCT
T ss_pred ceeeeccccccce--eeEEEeccCCcceeeeceee-eeecC---CCccEEEEec---cceeEEeeccccCceEEEeeccc
Confidence 9944444441333 4444444322 11111000 00000 0012234442 56666666655666677766555
Q ss_pred CCceEE---ecc---C---CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 390 GHSLSL---LDI---P---FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 390 ~~~~~~---lt~---~---~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
...... +.. . ......+ ...+++.++..........+|.++..++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (333)
T d1ri6a_ 210 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV 265 (333)
T ss_dssp TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred ccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE
Confidence 544322 111 1 1112222 34455555666555555556666654443
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.80 E-value=1.7e-07 Score=93.78 Aligned_cols=197 Identities=9% Similarity=0.044 Sum_probs=118.4
Q ss_pred ceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccE
Q 004735 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~ 274 (732)
.++++|+|+.|++... ..++++++++++. .+.++.....+...+|||||++|+-.+. ...
T Consensus 22 ~~a~~~~g~~l~~~~~----------~~v~i~~~~~~~~--~~~~~~H~~~v~~~~~sp~g~~latg~~--------dg~ 81 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCNG----------TSVYTVPVGSLTD--TEIYTEHSHQTTVAKTSPSGYYCASGDV--------HGN 81 (311)
T ss_dssp CCEECTTSSEEEEEET----------TEEEEEETTCSSC--CEEECCCSSCEEEEEECTTSSEEEEEET--------TSE
T ss_pred EEEEcCCCCEEEEEeC----------CEEEEEECCCCce--eEEEcCCCCCEEEEEEeCCCCeEecccc--------Cce
Confidence 4578999999888643 5788999988761 3444444566778899999999876652 345
Q ss_pred EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEE-ecccccccCCCce
Q 004735 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLW 352 (732)
Q Consensus 275 l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w 352 (732)
|.++|+. +++......+.... ..+..+.|+|||+ ++..+.. ....+.+++.++++... +......+
T Consensus 82 i~iwd~~-~~~~~~~~~~~~~~----~~v~~v~~s~d~~~l~~~~~~--~~~~~~v~~~~~~~~~~~l~~h~~~v----- 149 (311)
T d1nr0a1 82 VRIWDTT-QTTHILKTTIPVFS----GPVKDISWDSESKRIAAVGEG--RERFGHVFLFDTGTSNGNLTGQARAM----- 149 (311)
T ss_dssp EEEEESS-STTCCEEEEEECSS----SCEEEEEECTTSCEEEEEECC--SSCSEEEEETTTCCBCBCCCCCSSCE-----
T ss_pred Eeeeeee-cccccccccccccc----Ccccccccccccccccccccc--cccccccccccccccccccccccccc-----
Confidence 8899988 55432233344443 5677889999999 5544432 22223344555654332 22111111
Q ss_pred eecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEe-ccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL-DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~l-t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
..+.|.+ +++.++++...++.-.| ++..+++.... ......+..+ ..+++.+++.++.. ..+.++|
T Consensus 150 ----~~v~~~~---~~~~~l~sgs~d~~i~i--~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d---~~v~~~d 217 (311)
T d1nr0a1 150 ----NSVDFKP---SRPFRIISGSDDNTVAI--FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD---GTIVLYN 217 (311)
T ss_dssp ----EEEEECS---SSSCEEEEEETTSCEEE--EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT---SCEEEEE
T ss_pred ----ccccccc---cceeeeccccccccccc--ccccccccccccccccccccccccCcccccccccccc---ccccccc
Confidence 2233443 66666666666665544 47777665433 3334556666 44455666655543 3577788
Q ss_pred cCCCc
Q 004735 431 LDDHK 435 (732)
Q Consensus 431 l~~~~ 435 (732)
+..++
T Consensus 218 ~~~~~ 222 (311)
T d1nr0a1 218 GVDGT 222 (311)
T ss_dssp TTTCC
T ss_pred ccccc
Confidence 77765
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.79 E-value=1.3e-07 Score=94.80 Aligned_cols=266 Identities=13% Similarity=0.099 Sum_probs=143.8
Q ss_pred HhccCCccCceEEcCCCcEEEEeecCC----CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC--ceeEEE--CC
Q 004735 84 VSGASKRLGGTAVDGHGRLIWLESRPT----EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIF--GD 155 (732)
Q Consensus 84 i~~~~~~~~~~~~~pg~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~--~~~~~~--~~ 155 (732)
+...-..+++|+|+|.+.+|+++.... ..+ .|+++++.++ ....+.... . ...++ ....++ ++
T Consensus 13 v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g--~I~r~d~~~~-~~~~~~~~~--~----~~~~g~P~Gl~~~~dg~ 83 (314)
T d1pjxa_ 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAG--EILRIDLKTG-KKTVICKPE--V----NGYGGIPAGCQCDRDAN 83 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECC--EEEEECTTTC-CEEEEECCE--E----TTEECCEEEEEECSSSS
T ss_pred eecCCCCCeEeEEeCCCCEEEEECccccccccCC--EEEEEECCCC-cEEEEECCc--c----ccCCCcceeEEEeCCCC
Confidence 333445678999999567998865321 113 4788887743 222221111 0 00111 123333 33
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCe-EeeceeecCCCCEEEEEEeccCC--------CCCCceeEEEEE
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLV-SYADGIFDPRFNRYVTVREDRRQ--------DALNSTTEIVAI 226 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~-~~~~~~~spdG~~l~~~~~~~~~--------~~~~~~~~l~~~ 226 (732)
.+++. .....|++++.++ +....+....+.... ..++..++|+|+. +++ +.... ........||++
T Consensus 84 ~l~va-d~~~~i~~~~~~g--~~~~~~~~~~~g~~~~~pndl~~d~~G~l-yvt-d~~~~~~~~~~~~~~~~~~G~v~~~ 158 (314)
T d1pjxa_ 84 QLFVA-DMRLGLLVVQTDG--TFEEIAKKDSEGRRMQGCNDCAFDYEGNL-WIT-APAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp EEEEE-ETTTEEEEEETTS--CEEECCSBCTTSCBCBCCCEEEECTTSCE-EEE-ECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred EEEEE-ECCCeEEEEeCCC--cEEEEEeccccccccCCCcEEEECCCCCE-EEe-cCccCcccccccceeccCCceEEEE
Confidence 44444 4456799999885 433333322111112 2377889999984 443 32110 111224689999
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCC----eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcccc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGE----RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~----~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~ 302 (732)
+.++. ...+..+-.+-++..|+||+. +|++.. . ...+|+.+|++.+|.+...+.+......-...
T Consensus 159 ~~dg~----~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d--~-----~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~ 227 (314)
T d1pjxa_ 159 TTDGQ----MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE--T-----PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG 227 (314)
T ss_dssp CTTSC----EEEEEEEESSEEEEEEEECTTSCEEEEEEEE--T-----TTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred eecCc----eeEeeCCcceeeeeEECCCCCcceeEEEEEe--e-----cccceEEeeccCccccceeeEEEEcccccccc
Confidence 98754 444444333445678999875 465443 2 24569999987567766555443221000033
Q ss_pred CcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEE
Q 004735 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (732)
Q Consensus 303 ~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ 382 (732)
+..+++.+||+||+. +. +..+|+++|+++++......... .. ...+.|-+ +++.||++.... ..
T Consensus 228 pdGiavD~~GnlyVa-~~--~~g~I~~~dp~~g~~~~~i~~p~--~~------~t~~afg~---d~~~lyVt~~~~--g~ 291 (314)
T d1pjxa_ 228 ADGMDFDEDNNLLVA-NW--GSSHIEVFGPDGGQPKMRIRCPF--EK------PSNLHFKP---QTKTIFVTEHEN--NA 291 (314)
T ss_dssp EEEEEEBTTCCEEEE-EE--TTTEEEEECTTCBSCSEEEECSS--SC------EEEEEECT---TSSEEEEEETTT--TE
T ss_pred ceeeEEecCCcEEEE-Ec--CCCEEEEEeCCCCEEEEEEECCC--CC------EEEEEEeC---CCCEEEEEECCC--Cc
Confidence 456788999987654 33 33569999999887543221110 01 12334432 666788876433 46
Q ss_pred EEEEECCC
Q 004735 383 LGILDDFG 390 (732)
Q Consensus 383 ly~~~~~~ 390 (732)
||++++..
T Consensus 292 i~~~~~~~ 299 (314)
T d1pjxa_ 292 VWKFEWQR 299 (314)
T ss_dssp EEEEECSS
T ss_pred EEEEECCC
Confidence 77777543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.78 E-value=8.6e-07 Score=88.68 Aligned_cols=135 Identities=12% Similarity=-0.011 Sum_probs=82.9
Q ss_pred EEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE
Q 004735 159 FSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (732)
Q Consensus 159 f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 237 (732)
++...+++|.++|+++ ++.. .+..... ......++|||||++++.+.... ..|+++|+.+++ ..
T Consensus 5 vt~~~d~~v~v~D~~s--~~~~~~i~~~~~--~~~~~~i~~spDg~~l~v~~~~~--------~~v~v~D~~t~~---~~ 69 (337)
T d1pbyb_ 5 LAPARPDKLVVIDTEK--MAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGE---TL 69 (337)
T ss_dssp EEEETTTEEEEEETTT--TEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCC---EE
T ss_pred EEEcCCCEEEEEECCC--CeEEEEEECCCC--CCCccEEEECCCCCEEEEEECCC--------CeEEEEECCCCc---EE
Confidence 3445678999999987 5433 3332211 12336788999999865543221 589999999987 43
Q ss_pred E-ccc--CC---CceeccccCCCCCeEEEEeccCCCCCC----CccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 238 V-LVS--GS---DFYAFPRMDPRGERMAWIEWHHPNMPW----DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 238 ~-lt~--~~---~~~~~p~~SPDG~~la~~~~~~~~~~~----~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
. +.. .. .......+||||++++..........+ ....+.++|.. +++. ...+... ..+..+.
T Consensus 70 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~--~~~~~~~-----~~~~~~~ 141 (337)
T d1pbyb_ 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSR--RKAFEAP-----RQITMLA 141 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEE--EEEEECC-----SSCCCEE
T ss_pred EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc-CCeE--EEecccc-----CCceEEE
Confidence 2 221 11 122356899999999877643222111 23567888887 6655 3333333 3456889
Q ss_pred eCCCCc-EEE
Q 004735 308 WSSKGE-LFF 316 (732)
Q Consensus 308 wspDg~-l~~ 316 (732)
|+|||+ ++.
T Consensus 142 ~s~dg~~l~~ 151 (337)
T d1pbyb_ 142 WARDGSKLYG 151 (337)
T ss_dssp ECTTSSCEEE
T ss_pred EcCCCCEEEE
Confidence 999999 554
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.78 E-value=8e-09 Score=104.01 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=75.1
Q ss_pred CCCCCEEEEEcCCCCCccCC----cccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHh
Q 004735 492 EEKPPLLVKSHGGPTSEARG----ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG 567 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~----~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 567 (732)
..++|+ |++||..+..... .|..+...|+++||.|+++|++|.+.... .....+++.+.++.+++
T Consensus 6 ~~k~Pv-vlvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g~g~s~~----------~~~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 6 ATRYPV-ILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDG----------PNGRGEQLLAYVKQVLA 74 (319)
T ss_dssp CCSSCE-EEECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBCSSCTTS----------TTSHHHHHHHHHHHHHH
T ss_pred CCCCCE-EEECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCCCCCCCC----------CcccHHHHHHHHHHHHH
Confidence 455675 5689975443221 35668889999999999999986543211 01124566666666665
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 568 SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 568 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
.. +.++|.|+|||+||.++..++. +|++++.++.+++..
T Consensus 75 ~~--~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p~ 114 (319)
T d1cvla_ 75 AT--GATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTPH 114 (319)
T ss_dssp HH--CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred Hh--CCCCEEEEeccccHHHHHHHHHHCccccceEEEECCCC
Confidence 52 3579999999999999999988 999999999988753
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.77 E-value=4.2e-07 Score=92.25 Aligned_cols=257 Identities=10% Similarity=0.044 Sum_probs=130.9
Q ss_pred EECCEEEEEeCC----CCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCC-CCCceeEEEE
Q 004735 152 IFGDTVIFSNYK----DQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-ALNSTTEIVA 225 (732)
Q Consensus 152 ~~~~~i~f~~~~----~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~-~~~~~~~l~~ 225 (732)
+++.++++.... .+.+|++|.++ ++.. .+..+. ...++|||||++|++........ .......|.+
T Consensus 11 pdg~~~~v~~~~~~~~~~~v~v~D~~t--g~~~~~~~~g~------~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 11 PDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGF------LPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECS------SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCEEEEEecccCCCcCeEEEEECCC--CcEEEEEECCC------CCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 344466555432 34799999987 5443 332221 12478999999977654322100 0001357999
Q ss_pred EEcCCCCccccEEcc---cCCC-----ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 226 IALNGQNIQEPKVLV---SGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt---~~~~-----~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
+|+.+++ ..... .... ......|||||+++++.+... ...+++++.. +++............
T Consensus 83 ~D~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (355)
T d2bbkh_ 83 FDPVTLL---PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP------APAVGVVDLE-GKAFKRMLDVPDCYH 152 (355)
T ss_dssp ECTTTCC---EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS------SCEEEEEETT-TTEEEEEEECCSEEE
T ss_pred EECCCCC---EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC------CceeeeeecC-CCcEeeEEecCCcce
Confidence 9999987 43321 1111 123457999999998766332 2335555555 443311100000000
Q ss_pred -CccccCcCceeCCCCc---------------------------------------EEEEEeccCCeeeEEEEeccCCeE
Q 004735 298 -TIVESPTEPKWSSKGE---------------------------------------LFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 298 -~~~~~~~~~~wspDg~---------------------------------------l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
..........+++||+ +++... ...++.++..+++.
T Consensus 153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~ 228 (355)
T d2bbkh_ 153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY----TGKIHQIDLSSGDA 228 (355)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT----TSEEEEEECTTSSC
T ss_pred EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC----CCeEEEEecCCCcE
Confidence 0000111223444444 332221 12466666666655
Q ss_pred EEeccccc---ccCCCceeec-ccceeeeeecCCCCEEEEEEEEC-------CEEEEEEEECCCCceE-EeccCCCceEE
Q 004735 338 LAIYSLDA---EFSRPLWVFG-INSYEIIQSHGEKNLIACSYRQN-------GRSYLGILDDFGHSLS-LLDIPFTDIDN 405 (732)
Q Consensus 338 ~~l~~~~~---~~~~~~w~~~-~~~~~~~~~~~~~~~l~~~s~~~-------g~~~ly~~~~~~~~~~-~lt~~~~~v~~ 405 (732)
..+..... ......+.+. ...+.+.+ ++..+++..... +...|+++|..+++.. .+..+ ..+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~ 304 (355)
T d2bbkh_ 229 KFLPAVEALTEAERADGWRPGGWQQVAYHR---ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDS 304 (355)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEET---TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECE
T ss_pred EEEeccCCcccceEeeeeeccceEEEEEeC---CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEE
Confidence 44432111 1111233332 22344543 777777776543 3467999999887754 34332 22334
Q ss_pred e--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 406 I--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 406 ~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+ +.+++.+++.++..+ ..|+++|+++++.
T Consensus 305 ~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 305 INVSQDEKPLLYALSTGD--KTLYIHDAESGEE 335 (355)
T ss_dssp EEECCSSSCEEEEEETTT--TEEEEEETTTCCE
T ss_pred EEEcCCCCeEEEEEECCC--CEEEEEECCCCCE
Confidence 4 444555666655433 5799999999874
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.75 E-value=1.3e-08 Score=100.25 Aligned_cols=100 Identities=15% Similarity=0.027 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCCCCccC---CcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc
Q 004735 492 EEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 568 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~---~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 568 (732)
..++| ||++||..+.... ..|..+.+.|.++||.|+++|++|.+ .... ..+++.+.|+.+.+.
T Consensus 5 ~~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~~~---~~~~----------~a~~l~~~i~~~~~~ 70 (285)
T d1ex9a_ 5 QTKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLD---TSEV----------RGEQLLQQVEEIVAL 70 (285)
T ss_dssp CCSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCSSS---CHHH----------HHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCCCC---CcHH----------HHHHHHHHHHHHHHH
Confidence 46678 7889996443322 23566889999999999999998543 2211 134455556555554
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
. ..+++.++||||||.++..++. +|++++.++.++..
T Consensus 71 ~--g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP 108 (285)
T d1ex9a_ 71 S--GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp H--CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred c--CCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence 2 3468999999999999998888 99999999988765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.71 E-value=9e-07 Score=88.90 Aligned_cols=138 Identities=10% Similarity=-0.024 Sum_probs=77.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
..+++...++.|.++|+++ ++... +.... ........|||||++++...... ..|+++|+.+++
T Consensus 9 ~~l~~~~~~~~v~v~D~~t--~~~~~t~~~~~---~~~p~~l~~spDG~~l~v~~~~~--------~~v~~~d~~t~~-- 73 (346)
T d1jmxb_ 9 EYMIVTNYPNNLHVVDVAS--DTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNHY--------GDIYGIDLDTCK-- 73 (346)
T ss_dssp EEEEEEETTTEEEEEETTT--TEEEEEEECSS---CCSSCEEEECTTSSEEEEEETTT--------TEEEEEETTTTE--
T ss_pred cEEEEEcCCCEEEEEECCC--CCEEEEEEcCC---CCCcceEEECCCCCEEEEEECCC--------CcEEEEeCccCe--
Confidence 4555666778999999998 55432 22211 11225678999999865443322 589999999886
Q ss_pred ccEE-cccCCC------ceeccccCCCCCeEEEEeccCCCCCC----CccEEEEEEecCCCcee-eeEEecCCCCCcccc
Q 004735 235 EPKV-LVSGSD------FYAFPRMDPRGERMAWIEWHHPNMPW----DKAELWVGYISENGDVY-KRVCVAGFDPTIVES 302 (732)
Q Consensus 235 ~~~~-lt~~~~------~~~~p~~SPDG~~la~~~~~~~~~~~----~~~~l~v~d~~~~g~~~-~~~~~~~~~~~~~~~ 302 (732)
... +..... ......+||||++|+....+.....+ ....+.+++.. +++.. ........ ..
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~-----~~ 146 (346)
T d1jmxb_ 74 -NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGLEAKPVRTFPMP-----RQ 146 (346)
T ss_dssp -EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGGGBCCSEEEECC-----SS
T ss_pred -eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc-cceeeeEEEeeecc-----Cc
Confidence 332 221111 12356899999998766532211101 23456777776 45432 12222221 22
Q ss_pred CcCceeCCCCcEE
Q 004735 303 PTEPKWSSKGELF 315 (732)
Q Consensus 303 ~~~~~wspDg~l~ 315 (732)
.....+++|++++
T Consensus 147 ~~~~~~~~~~~~~ 159 (346)
T d1jmxb_ 147 VYLMRAADDGSLY 159 (346)
T ss_dssp CCCEEECTTSCEE
T ss_pred eEEEEecCCCEEE
Confidence 3445566666544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.69 E-value=4.9e-06 Score=81.80 Aligned_cols=200 Identities=11% Similarity=-0.018 Sum_probs=109.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeE
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l 167 (732)
..+.+++|+| ++.++ +-. .++...+|....+ +........ +...+.+..++++.-+++...++.+
T Consensus 13 ~~V~~l~~s~dg~~l~-s~s---~Dg~v~vWd~~~~---~~~~~~~~~-------h~~~v~~v~~~~~g~~~~~~~d~~v 78 (299)
T d1nr0a2 13 KAITALSSSADGKTLF-SAD---AEGHINSWDISTG---ISNRVFPDV-------HATMITGIKTTSKGDLFTVSWDDHL 78 (299)
T ss_dssp SCEEEEEECTTSSEEE-EEE---TTSCEEEEETTTC---CEEECSSCS-------CSSCEEEEEECTTSCEEEEETTTEE
T ss_pred CCcEEEEECCCCCEEE-EEc---CCCeEEEEECCCC---cEEEEEcCC-------CCCcEEEEEeeccceeecccceeeE
Confidence 3467899999 65543 332 3577777755322 333222211 1122334455544223344457788
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCcee
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA 247 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~ 247 (732)
.+++... .....................|+|||+.++.... ..+.+++.. + ...+... ....
T Consensus 79 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~----------~~i~~~~~~--~---~~~~~~~-~~~~ 140 (299)
T d1nr0a2 79 KVVPAGG--SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY----------KHIAIYSHG--K---LTEVPIS-YNSS 140 (299)
T ss_dssp EEECSSS--SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES----------SEEEEEETT--E---EEEEECS-SCEE
T ss_pred EEeccCC--cccccccccccccccccccccccccccccccccc----------ccccccccc--c---ccccccc-cccc
Confidence 8888764 2222111110000122345679999997655443 356666643 2 2222222 1234
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeE
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l 327 (732)
...|+|||+.|+... ....|.++|+. +++.......... ..+..+.|+||+++++.... .+ .|
T Consensus 141 ~~~~s~~~~~l~~g~--------~dg~i~~~d~~-~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~-d~--~i 203 (299)
T d1nr0a2 141 CVALSNDKQFVAVGG--------QDSKVHVYKLS-GASVSEVKTIVHP-----AEITSVAFSNNGAFLVATDQ-SR--KV 203 (299)
T ss_dssp EEEECTTSCEEEEEE--------TTSEEEEEEEE-TTEEEEEEEEECS-----SCEEEEEECTTSSEEEEEET-TS--CE
T ss_pred ccccccccccccccc--------ccccccccccc-ccccccccccccc-----cccccccccccccccccccc-cc--cc
Confidence 467999999887655 23458999998 6765444444333 45678899999995445544 34 36
Q ss_pred EEEeccCCeE
Q 004735 328 HKWIESNNEV 337 (732)
Q Consensus 328 ~~~d~~~g~~ 337 (732)
+.+|..++..
T Consensus 204 ~~~~~~~~~~ 213 (299)
T d1nr0a2 204 IPYSVANNFE 213 (299)
T ss_dssp EEEEGGGTTE
T ss_pred cccccccccc
Confidence 6677766543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.69 E-value=2.6e-07 Score=97.22 Aligned_cols=201 Identities=6% Similarity=-0.110 Sum_probs=112.0
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
++++...++.|.++|+++ ++. +.+..+ ......+|||||++++ +.... ..+.++|+++++.+.
T Consensus 34 ~~v~~~d~g~v~v~D~~t--~~v~~~~~~g-----~~~~~v~fSpDG~~l~-~~s~d--------g~v~~~d~~t~~~~~ 97 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGST--YEIKTVLDTG-----YAVHISRLSASGRYLF-VIGRD--------GKVNMIDLWMKEPTT 97 (432)
T ss_dssp EEEEETTTTEEEEEETTT--CCEEEEEECS-----SCEEEEEECTTSCEEE-EEETT--------SEEEEEETTSSSCCE
T ss_pred EEEEEcCCCEEEEEECCC--CcEEEEEeCC-----CCeeEEEECCCCCEEE-EEcCC--------CCEEEEEeeCCCceE
Confidence 345666778999999998 554 344333 2346778999999975 44322 478889998876111
Q ss_pred cEEcccC---CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCC-----ccccCcCce
Q 004735 236 PKVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT-----IVESPTEPK 307 (732)
Q Consensus 236 ~~~lt~~---~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~ 307 (732)
...+..+ ......|.|||||++|+..... ...+.++|.+ +++............. -......+.
T Consensus 98 ~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~-------~~~v~i~d~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (432)
T d1qksa2 98 VAEIKIGSEARSIETSKMEGWEDKYAIAGAYW-------PPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 169 (432)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-------TTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred EEEEecCCCCCCeEEecccCCCCCEEEEEcCC-------CCeEEEEeCc-cccceeeeccCCccccceeccCCCceeEEE
Confidence 1223222 2345578999999998655422 3458899988 7766332221110000 001122346
Q ss_pred eCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 308 wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
.|+||+ +++.... . ..+..++..+++...+..... .. ....+.|.+ ++++++..+.... .+..+
T Consensus 170 ~s~dg~~~~vs~~~-~--~~i~~~d~~~~~~~~~~~i~~--g~-----~~~~~~~sp---dg~~~~va~~~~~--~v~v~ 234 (432)
T d1qksa2 170 ASHYRPEFIVNVKE-T--GKILLVDYTDLNNLKTTEISA--ER-----FLHDGGLDG---SHRYFITAANARN--KLVVI 234 (432)
T ss_dssp ECSSSSEEEEEETT-T--TEEEEEETTCSSEEEEEEEEC--CS-----SEEEEEECT---TSCEEEEEEGGGT--EEEEE
T ss_pred ECCCCCEEEEEEcc-C--CeEEEEEccCCCcceEEEEcc--cC-----ccccceECC---CCCEEEEeccccc--eEEEe
Confidence 788887 4443332 3 357777777665443332110 00 012334543 7777776664333 45666
Q ss_pred ECCCCceEEe
Q 004735 387 DDFGHSLSLL 396 (732)
Q Consensus 387 ~~~~~~~~~l 396 (732)
+.++++....
T Consensus 235 d~~~~~~~~~ 244 (432)
T d1qksa2 235 DTKEGKLVAI 244 (432)
T ss_dssp ETTTTEEEEE
T ss_pred ecccceEEEE
Confidence 7777765433
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=6.1e-09 Score=113.33 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=88.0
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCC-CCCChhhHHhhccCCCc
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLLGRWGI 552 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~-~g~g~~~~~~~~~~~~~ 552 (732)
-++.-+|.|+... .+.+.|+||++|||...............++..+++|+.+|||-. -|+-..-.....+++
T Consensus 96 CL~LnI~~P~~~~----~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~~gN~-- 169 (532)
T d2h7ca1 96 CLYLNIYTPADLT----KKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHSRGNW-- 169 (532)
T ss_dssp CCEEEEEECSCTT----SCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCCCCH--
T ss_pred CCEEEEEECCCCC----CCCCcEEEEEEeCCcccccccccCCchhhhhcCceEEEEEeeccCCCcccccccccccccc--
Confidence 4666678886532 356689999999986543333222223456788999999999942 111000001122233
Q ss_pred ccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcC
Q 004735 553 VDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 608 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~ 608 (732)
-+.|...|++|+.++ -.-|+++|.|+|+|.||..+..++. ...+|+.+|+.+|..
T Consensus 170 -Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 170 -GHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp -HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 389999999999874 4568999999999999999987776 455899999999754
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.65 E-value=8.3e-09 Score=110.72 Aligned_cols=127 Identities=21% Similarity=0.293 Sum_probs=88.4
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-H-HHHHHHHCCCEEEEEcCCCC-CCCC--hhhHHhhc
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-L-SIQYWTSRGWAFVDVNYGGS-TGYG--REFRERLL 547 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-~-~~~~l~~~G~~v~~~d~rG~-~g~g--~~~~~~~~ 547 (732)
..++.-+|.|+. +.++.|+||++|||.......... . ....+.+.+++|+.+|||-. -|+- .+......
T Consensus 80 DCL~lni~~P~~------~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~~GFl~~~~~~~~~~ 153 (483)
T d1qe3a_ 80 DCLYVNVFAPDT------PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYS 153 (483)
T ss_dssp CCCEEEEEEECS------SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTCTTSC
T ss_pred cCCEEEEEECCC------CCCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccchhhccccccccccc
Confidence 357777888875 356789999999986543332211 1 23345566899999999942 1110 01111122
Q ss_pred cCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcC
Q 004735 548 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 608 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~ 608 (732)
+++ -+.|+..|++|+.+. -.-|+++|.|+|+|.||..+..++. ...+|+.+|+.+|..
T Consensus 154 gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 154 DNL---GLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp SCH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccc---ccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 333 389999999999875 4468999999999999999988887 345899999999864
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.60 E-value=3.6e-06 Score=86.07 Aligned_cols=247 Identities=12% Similarity=0.042 Sum_probs=128.9
Q ss_pred ceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceec---CCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPI---TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 148 ~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~l---t~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
.+.+++++ ..+++...++.|.++++++ ++.+++ ... ........|||||++|+....+ ..|
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~--~~~~~~~~l~gH----~~~V~~l~fsp~~~~l~s~s~D---------~~i 75 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSG--NKWVQVHELKEH----NGQVTGVDWAPDSNRIVTCGTD---------RNA 75 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEET--TEEEEEEEEECC----SSCEEEEEEETTTTEEEEEETT---------SCE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCC--CCEEEEEEecCC----CCCEEEEEECCCCCEEEEEECC---------CeE
Confidence 44555543 3444445667888999876 543332 222 2345677899999987655432 467
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE-ecCCCCCcccc
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVES 302 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~-~~~~~~~~~~~ 302 (732)
+++|+.++.......+......+....|+|||++|+..+.+ ..+.+++++.......... ..... ..
T Consensus 76 ~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d--------~~i~i~~~~~~~~~~~~~~~~~~~~----~~ 143 (371)
T d1k8kc_ 76 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--------RVISICYFEQENDWWVCKHIKKPIR----ST 143 (371)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT--------SSEEEEEEETTTTEEEEEEECTTCC----SC
T ss_pred EEEeecccccccccccccccccccccccccccccceeeccc--------Ccceeeeeecccccccccccccccc----cc
Confidence 77788766511111222333445677899999998876622 2255556552222211122 22222 44
Q ss_pred CcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec---c--cccc--------cCCCceeecccceeeeeecCCCC
Q 004735 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY---S--LDAE--------FSRPLWVFGINSYEIIQSHGEKN 369 (732)
Q Consensus 303 ~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~---~--~~~~--------~~~~~w~~~~~~~~~~~~~~~~~ 369 (732)
+..+.|+|||+++++... .+.-.+| +...+...... . .... .....+ ...+.|.+ +++
T Consensus 144 v~~v~~~p~~~~l~s~s~-D~~v~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~---~g~ 214 (371)
T d1k8kc_ 144 VLSLDWHPNSVLLAAGSC-DFKCRIF--SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---VHGVCFSA---NGS 214 (371)
T ss_dssp EEEEEECTTSSEEEEEET-TSCEEEE--ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---EEEEEECS---SSS
T ss_pred cccccccccccceecccc-CcEEEEE--eeccCccccccccccccccccceeeeeeccCccCc---EEEEEeec---ccc
Confidence 567899999994444444 4554554 43322111000 0 0000 001111 12334553 666
Q ss_pred EEEEEEEECCEEEEEEEECCCCce-EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 370 LIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 370 ~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
.|+.. ..++.-.+| |...++. ..+......+..+ ..+++.++..+ .+....+|.++...+.
T Consensus 215 ~l~s~-~~d~~i~iw--d~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g--~d~~~~~~~~~~~~~~ 277 (371)
T d1k8kc_ 215 RVAWV-SHDSTVCLA--DADKKMAVATLASETLPLLAVTFITESSLVAAG--HDCFPVLFTYDSAAGK 277 (371)
T ss_dssp EEEEE-ETTTEEEEE--EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--TTSSCEEEEEETTTTE
T ss_pred ccccc-ccCCcceEE--eeecccceeeeecccccceeeeecCCCCEEEEE--cCCceEEEEeeCCCce
Confidence 66544 446654444 6656553 4454445567766 45667766533 3455668888765554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.60 E-value=6.9e-07 Score=93.82 Aligned_cols=207 Identities=11% Similarity=0.008 Sum_probs=117.2
Q ss_pred ecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEE
Q 004735 198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV 277 (732)
Q Consensus 198 ~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v 277 (732)
...|.+.++++..... ..|.++|.++++. ...+..+ ......+|||||++||..+ . ...+.+
T Consensus 26 ~~~~~~~~~~v~~~d~-------g~v~v~D~~t~~v--~~~~~~g-~~~~~v~fSpDG~~l~~~s-~-------dg~v~~ 87 (432)
T d1qksa2 26 NDWDLENLFSVTLRDA-------GQIALIDGSTYEI--KTVLDTG-YAVHISRLSASGRYLFVIG-R-------DGKVNM 87 (432)
T ss_dssp SCCCGGGEEEEEETTT-------TEEEEEETTTCCE--EEEEECS-SCEEEEEECTTSCEEEEEE-T-------TSEEEE
T ss_pred ecCCCCcEEEEEEcCC-------CEEEEEECCCCcE--EEEEeCC-CCeeEEEECCCCCEEEEEc-C-------CCCEEE
Confidence 4445545666655432 6899999999882 3344444 3456789999999997554 2 234899
Q ss_pred EEecCCCceeeeEEec-CCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccccc-ccCCCceee
Q 004735 278 GYISENGDVYKRVCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRPLWVF 354 (732)
Q Consensus 278 ~d~~~~g~~~~~~~~~-~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~-~~~~~~w~~ 354 (732)
+|+. +++......+. +..+. ..+..+.|||||+ |+..... .+ .+.++|.++++......... ......+.+
T Consensus 88 ~d~~-t~~~~~~~~i~~~~~~~--~~~~s~~~SpDG~~l~vs~~~-~~--~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~ 161 (432)
T d1qksa2 88 IDLW-MKEPTTVAEIKIGSEAR--SIETSKMEGWEDKYAIAGAYW-PP--QYVIMDGETLEPKKIQSTRGMTYDEQEYHP 161 (432)
T ss_dssp EETT-SSSCCEEEEEECCSEEE--EEEECCSTTCTTTEEEEEEEE-TT--EEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred EEee-CCCceEEEEEecCCCCC--CeEEecccCCCCCEEEEEcCC-CC--eEEEEeCccccceeeeccCCccccceeccC
Confidence 9988 66543232222 21111 4455678999999 5554433 33 46778998888766553221 111222332
Q ss_pred cccc--eeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEe---ccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEE
Q 004735 355 GINS--YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL---DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 355 ~~~~--~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~l---t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
.... +.+.+ ++..++++...++ .++.++..+.+...+ ..+. ....+ ..++++.++.++... ..+..
T Consensus 162 ~~~~~~v~~s~---dg~~~~vs~~~~~--~i~~~d~~~~~~~~~~~i~~g~-~~~~~~~spdg~~~~va~~~~--~~v~v 233 (432)
T d1qksa2 162 EPRVAAILASH---YRPEFIVNVKETG--KILLVDYTDLNNLKTTEISAER-FLHDGGLDGSHRYFITAANAR--NKLVV 233 (432)
T ss_dssp CCCEEEEEECS---SSSEEEEEETTTT--EEEEEETTCSSEEEEEEEECCS-SEEEEEECTTSCEEEEEEGGG--TEEEE
T ss_pred CCceeEEEECC---CCCEEEEEEccCC--eEEEEEccCCCcceEEEEcccC-ccccceECCCCCEEEEecccc--ceEEE
Confidence 2221 23333 6667766654444 466677766554332 2222 23444 455566666655432 36778
Q ss_pred EEcCCCcc
Q 004735 429 VTLDDHKL 436 (732)
Q Consensus 429 ~dl~~~~~ 436 (732)
+|+++++.
T Consensus 234 ~d~~~~~~ 241 (432)
T d1qksa2 234 IDTKEGKL 241 (432)
T ss_dssp EETTTTEE
T ss_pred eecccceE
Confidence 88877764
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.9e-08 Score=97.23 Aligned_cols=93 Identities=10% Similarity=0.055 Sum_probs=55.9
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
+.+.| ||++||++++. ..|..++..| ++.|+++|++|.+.... .+ ...+++.+++..+ .
T Consensus 23 ~~~~P-l~l~Hg~~gs~--~~~~~l~~~L---~~~v~~~d~~g~~~~~~--~~--------~~a~~~~~~~~~~-----~ 81 (286)
T d1xkta_ 23 SSERP-LFLVHPIEGST--TVFHSLASRL---SIPTYGLQCTRAAPLDS--IH--------SLAAYYIDCIRQV-----Q 81 (286)
T ss_dssp CCSCC-EEEECCTTCCC--GGGHHHHHTC---SSCEEEECCCTTSCCSC--HH--------HHHHHHHHHHHHH-----C
T ss_pred CCCCe-EEEECCCCccH--HHHHHHHHHc---CCeEEEEeCCCCCCCCC--HH--------HHHHHHHHHHHHh-----c
Confidence 34456 67999986554 4455555444 78999999997543211 00 0123333333332 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeec
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY 605 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~ 605 (732)
+.+++.|+|||+||.+++.++. +|+++..++.+.
T Consensus 82 ~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 82 PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp CSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred CCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 3468999999999999999998 888877765443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.56 E-value=3e-06 Score=84.78 Aligned_cols=244 Identities=11% Similarity=0.044 Sum_probs=128.8
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
.|+|++...++|++++.++ +.... +... .......+++|||+.+++...+... ...|+.++..++.
T Consensus 52 ~Ly~~D~~~g~I~ri~p~g--~~~~~~~~~~----~~~p~gla~~~dG~l~va~~~~~~~-----~~~i~~~~~~~~~-- 118 (319)
T d2dg1a1 52 QLFLLDVFEGNIFKINPET--KEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGDFKS-----TGGIFAATENGDN-- 118 (319)
T ss_dssp CEEEEETTTCEEEEECTTT--CCEEEEEECS----SSSEEEEEECTTSCEEEEECTTSSS-----CCEEEEECTTSCS--
T ss_pred CEEEEECCCCEEEEEECCC--CeEEEEEeCC----CCCeeEEEECCCCCEEEEecCCCcc-----ceeEEEEcCCCce--
Confidence 6888888888999999986 44332 2222 1223567899999854332221111 3578888888776
Q ss_pred ccEEcccCC---CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 235 EPKVLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 235 ~~~~lt~~~---~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
...+.... ...+...++|||+ |++....... ......++.++.+ ++.+.. +..+. .....++|+||
T Consensus 119 -~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~-~~~~g~v~~~~~d-g~~~~~--~~~~~-----~~pnGia~s~d 187 (319)
T d2dg1a1 119 -LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYS-TNPLGGVYYVSPD-FRTVTP--IIQNI-----SVANGIALSTD 187 (319)
T ss_dssp -CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBT-TBCCEEEEEECTT-SCCEEE--EEEEE-----SSEEEEEECTT
T ss_pred -eeeeccCCCcccCCcceeEEeccc-eeeccccccc-ccCcceeEEEecc-cceeEE--Eeecc-----ceeeeeeeccc
Confidence 55444322 2234567899997 7666533221 1234568888765 344422 22221 33457899999
Q ss_pred CcEEEEEeccCCeeeEEEEeccC--CeEEEecc-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESN--NEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~--g~~~~l~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|+.+|.++. ...+|++++.+. ........ ........ .. ...+.+- .++.||++.... ..|.+++.
T Consensus 188 g~~lyvad~--~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~~--PdGl~vD----~~G~l~Va~~~~--g~V~~~~p 256 (319)
T d2dg1a1 188 EKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGH-EG--PDSCCID----SDDNLYVAMYGQ--GRVLVFNK 256 (319)
T ss_dssp SSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SE--EEEEEEB----TTCCEEEEEETT--TEEEEECT
T ss_pred cceEEEecc--cCCceEEEEEcCCCceeccccceeeeccCCc-cc--eeeeeEc----CCCCEEEEEcCC--CEEEEECC
Confidence 994444554 334678777643 22211110 00000100 01 1223332 334466655433 46888898
Q ss_pred CCCceEEeccCCC------ceEEe-eEeC-CEEEEEEeCCCCC--cEEEEEEcCCC
Q 004735 389 FGHSLSLLDIPFT------DIDNI-TLGN-DCLFVEGASGVEP--SSVAKVTLDDH 434 (732)
Q Consensus 389 ~~~~~~~lt~~~~------~v~~~-~~~~-~~~~~~~~~~~~~--~~ly~~dl~~~ 434 (732)
++..+..+..+.. ....+ ..++ ..++...+....+ ..||+++....
T Consensus 257 ~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~~~ 312 (319)
T d2dg1a1 257 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK 312 (319)
T ss_dssp TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCCCc
Confidence 8776776654421 12233 2233 3444444332222 34888876543
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.56 E-value=1.9e-07 Score=90.47 Aligned_cols=195 Identities=12% Similarity=0.035 Sum_probs=108.4
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHH-HHHHHhcCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKAD 572 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d 572 (732)
..|.|+++||...+.....|..+++.|.. .+.|+.++.+|.+. +. ... .+++++.+. ++.+.+. ..
T Consensus 41 ~~~~l~c~~~~~~gg~~~~y~~La~~L~~-~~~V~al~~pG~~~-~e----~~~-----~s~~~~a~~~~~~i~~~--~~ 107 (255)
T d1mo2a_ 41 GEVTVICCAGTAAISGPHEFTRLAGALRG-IAPVRAVPQPGYEE-GE----PLP-----SSMAAVAAVQADAVIRT--QG 107 (255)
T ss_dssp CSSEEEEECCCSSSCSGGGGHHHHHHHTT-TCCEEEECCTTSST-TC----CEE-----SSHHHHHHHHHHHHHHT--TS
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCCcCC-CC----CCC-----CCHHHHHHHHHHHHHHh--CC
Confidence 45889999974323344567677777655 48999999986532 11 111 234555543 3444443 23
Q ss_pred CCcEEEEEcChHHHHHHHHHh----CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcC------Chh------hhh
Q 004735 573 EKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVG------SEK------DYY 636 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~~------~~~ 636 (732)
...+.|+|||+||.+++.++. ....+..++++.+......... ..+.......... +.. .+.
T Consensus 108 ~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 185 (255)
T d1mo2a_ 108 DKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAM--NAWLEELTATLFDRETVRMDDTRLTALGAYD 185 (255)
T ss_dssp SSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEECSCSSHHHHH--HHHHHHHHTTCC----CCCCHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECCCCCCCccch--hhHHHHHHHHhhccccccCCHHHHHHHHHHH
Confidence 467999999999999998875 4566788887776432111100 0010111111110 000 111
Q ss_pred hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHh-CCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 637 EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE-NGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 637 ~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~-~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
..-.......+.+|++++.+.+|....... .++. ...+++++.+++ +|.-...+......+.+.+||
T Consensus 186 ~~~~~~~~~~~~~p~l~v~a~~~~~~~~~~------~w~~~~~~~~~~~~v~G-~H~~ml~~~~~~~A~~i~~~L 253 (255)
T d1mo2a_ 186 RLTGQWRPRETGLPTLLVSAGEPMGPWPDD------SWKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWL 253 (255)
T ss_dssp HHHHHCCCCCCCCCEEEEECCSSSSCCTTC------CCCCCCCSSCEEEECCS-CCSSCSSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCccccceEEEeecCCCCCcchhh------HHHHhCCCCcEEEEECC-CCcccccccHHHHHHHHHHHh
Confidence 111112245678999999998885543321 1111 234678999987 675223356666666777776
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.56 E-value=1.4e-06 Score=89.15 Aligned_cols=119 Identities=8% Similarity=0.095 Sum_probs=77.0
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
...+|||||++|+.... ...|.++++++++......+......+....|||||++|+-.+.+ .
T Consensus 11 t~~~~s~dg~~la~~~~---------~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D--------~ 73 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPN---------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD--------R 73 (371)
T ss_dssp CEEEECTTSSEEEEECS---------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT--------S
T ss_pred EEEEECCCCCEEEEEeC---------CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC--------C
Confidence 45679999998765533 147888888877511122233334567788999999998766522 2
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCC
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g 335 (732)
.|+++|+. +++......+.+.. ..+..+.|+|||+.+++... .+...++.++....
T Consensus 74 ~i~vWd~~-~~~~~~~~~~~~~~----~~v~~i~~~p~~~~l~~~s~-d~~i~i~~~~~~~~ 129 (371)
T d1k8kc_ 74 NAYVWTLK-GRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSG-SRVISICYFEQEND 129 (371)
T ss_dssp CEEEEEEE-TTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTT
T ss_pred eEEEEeec-cccccccccccccc----ccccccccccccccceeecc-cCcceeeeeecccc
Confidence 38888988 66554444444443 56778899999994444444 46666776665444
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.53 E-value=2.5e-06 Score=84.26 Aligned_cols=219 Identities=12% Similarity=0.036 Sum_probs=124.7
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
.++.|+|++...+.|+++|+++ ++.+..... .......+.+||+.|+.. . ..|+++|.++++
T Consensus 28 ~~~~l~wvDi~~~~I~r~d~~~--g~~~~~~~~-----~~~~~i~~~~dg~l~va~-~----------~gl~~~d~~tg~ 89 (295)
T d2ghsa1 28 ASGTAWWFNILERELHELHLAS--GRKTVHALP-----FMGSALAKISDSKQLIAS-D----------DGLFLRDTATGV 89 (295)
T ss_dssp TTTEEEEEEGGGTEEEEEETTT--TEEEEEECS-----SCEEEEEEEETTEEEEEE-T----------TEEEEEETTTCC
T ss_pred CCCEEEEEECCCCEEEEEECCC--CeEEEEECC-----CCcEEEEEecCCCEEEEE-e----------CccEEeecccce
Confidence 4668999988888999999997 655544332 123455677888765543 2 479999999998
Q ss_pred ccccEEcccCC-----CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 233 IQEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 233 ~~~~~~lt~~~-----~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
.+.+.... ...+...+.|+|+ |.+........ .....+|. +. +|+... +..+. .....+.
T Consensus 90 ---~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~-~~~g~l~~--~~-~g~~~~--~~~~~-----~~~Ng~~ 154 (295)
T d2ghsa1 90 ---LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAE-TGAGSIYH--VA-KGKVTK--LFADI-----SIPNSIC 154 (295)
T ss_dssp ---EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCC-TTCEEEEE--EE-TTEEEE--EEEEE-----SSEEEEE
T ss_pred ---eeEEeeeecCCCcccceeeEECCCCC-EEEEecccccc-ccceeEee--ec-CCcEEE--Eeecc-----CCcceee
Confidence 66664321 1244567899997 66665443221 12334444 44 565532 22222 3345789
Q ss_pred eCCCCc-EEEEEeccCCeeeEEEEeccC--C----eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 308 WSSKGE-LFFVTDRKNGFWNLHKWIESN--N----EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 308 wspDg~-l~~~~~~~~g~~~l~~~d~~~--g----~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
|++|++ +|+. +. ....|++++.+. + +.+...........| ..+.+- .++.|++.....
T Consensus 155 ~s~d~~~l~~~-dt--~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~p------dG~~vD----~~GnlWva~~~~-- 219 (295)
T d2ghsa1 155 FSPDGTTGYFV-DT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM------DGSVCD----AEGHIWNARWGE-- 219 (295)
T ss_dssp ECTTSCEEEEE-ET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE------EEEEEC----TTSCEEEEEETT--
T ss_pred ecCCCceEEEe-ec--ccceeeEeeecccccccccceEEEeccCcccccc------cceEEc----CCCCEEeeeeCC--
Confidence 999999 5554 43 334577776543 2 112111111111111 122221 333455444333
Q ss_pred EEEEEEECCCCceEEeccCCCceEEee---EeCCEEEEEEeC
Q 004735 381 SYLGILDDFGHSLSLLDIPFTDIDNIT---LGNDCLFVEGAS 419 (732)
Q Consensus 381 ~~ly~~~~~~~~~~~lt~~~~~v~~~~---~~~~~~~~~~~~ 419 (732)
..|+++++++..++.+..+...++.+. .+.+.+++.+++
T Consensus 220 g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 220 GAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp TEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 368889999888888887766666662 233455554444
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.53 E-value=3.3e-06 Score=88.28 Aligned_cols=211 Identities=11% Similarity=0.019 Sum_probs=114.7
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
..+.+++|.+.+++|.... .+.|.++|+++++. ...+..+ ......+|||||++||..+ . ..
T Consensus 22 ~~~~~~~d~~~~~~V~~~~-------dg~v~vwD~~t~~~--~~~l~~g-~~~~~vafSPDGk~l~~~~-~-------d~ 83 (426)
T d1hzua2 22 KKQLNDLDLPNLFSVTLRD-------AGQIALVDGDSKKI--VKVIDTG-YAVHISRMSASGRYLLVIG-R-------DA 83 (426)
T ss_dssp SSCCSCCCGGGEEEEEETT-------TTEEEEEETTTCSE--EEEEECC-SSEEEEEECTTSCEEEEEE-T-------TS
T ss_pred CcccccCCCCeEEEEEEcC-------CCEEEEEECCCCcE--EEEEeCC-CCeeEEEECCCCCEEEEEe-C-------CC
Confidence 4456778877777776543 26899999999872 3444444 3456789999999886544 2 23
Q ss_pred EEEEEEecCCCceeeeEEecCC-CCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccc-cccCCC
Q 004735 274 ELWVGYISENGDVYKRVCVAGF-DPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AEFSRP 350 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~-~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~-~~~~~~ 350 (732)
.+.++|++ +++......+... .+. .....+.|+|||+ ++..... . ..+..+|..+++...+.... ......
T Consensus 84 ~v~vwd~~-t~~~~~~~~i~~~~~~~--~~~~s~~~spDG~~l~v~~~~-~--~~v~i~d~~~~~~~~~~~~~~~~~~~~ 157 (426)
T d1hzua2 84 RIDMIDLW-AKEPTKVAEIKIGIEAR--SVESSKFKGYEDRYTIAGAYW-P--PQFAIMDGETLEPKQIVSTRGMTVDTQ 157 (426)
T ss_dssp EEEEEETT-SSSCEEEEEEECCSEEE--EEEECCSTTCTTTEEEEEEEE-S--SEEEEEETTTCCEEEEEECCEECSSSC
T ss_pred CEEEEEcc-CCceeEEEEEeCCCCCc--ceEEeeeecCCCCEEEEeecC-C--CeEEEEcCCccceeEEeeccCCCccce
Confidence 58999998 6764332222221 101 3455788999999 5544333 2 34666788887766554321 122222
Q ss_pred ceeeccc--ceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce---EEeccCCCceEEe-eEeCCEEEEEEeCCCCCc
Q 004735 351 LWVFGIN--SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL---SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPS 424 (732)
Q Consensus 351 ~w~~~~~--~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~---~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~ 424 (732)
.+.++.. .+.+.+ ++..+++.....+ .+..++...+.. ..+.. ...+..+ ..++++.++.+... ..
T Consensus 158 ~~~~~~~~~~i~~s~---d~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~a~~~--~~ 229 (426)
T d1hzua2 158 TYHPEPRVAAIIASH---EHPEFIVNVKETG--KVLLVNYKDIDNLTVTSIGA-APFLADGGWDSSHRYFMTAANN--SN 229 (426)
T ss_dssp CEESCCCEEEEEECS---SSSEEEEEETTTT--EEEEEECSSSSSCEEEEEEC-CSSEEEEEECTTSCEEEEEETT--CS
T ss_pred eecCCCceeEEEECC---CCCEEEEecCCCC--eEEEEEeccccceeeEEecc-CCccEeeeECCCCcEEEeeeec--cc
Confidence 3332221 112222 4455554443333 344444444332 22222 2234444 44455565555533 35
Q ss_pred EEEEEEcCCCcc
Q 004735 425 SVAKVTLDDHKL 436 (732)
Q Consensus 425 ~ly~~dl~~~~~ 436 (732)
.+..++..+++.
T Consensus 230 ~~~~~~~~~~~~ 241 (426)
T d1hzua2 230 KVAVIDSKDRRL 241 (426)
T ss_dssp EEEEEETTTTEE
T ss_pred ceeeeecccccE
Confidence 577788877765
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.53 E-value=7.5e-06 Score=85.54 Aligned_cols=225 Identities=10% Similarity=0.014 Sum_probs=129.5
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
.......++||||++++|..+..+.+ ...|+++|+++|+ .....-.......+.|++|++.|+|+..+.....
T Consensus 124 ~~~~~~~~~Spd~~~la~s~d~~G~e----~~~l~v~Dl~tg~---~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~ 196 (430)
T d1qfma1 124 TVALRGYAFSEDGEYFAYGLSASGSD----WVTIKFMKVDGAK---ELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGK 196 (430)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCS----CEEEEEEETTTTE---EEEEEEEEECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred cceecceEecCCCCEEEEEeccccCc----hheeEEeccCcce---ecccccccccccceEEcCCCCEEEEEEeccccCc
Confidence 34445678999999999988766655 3899999999987 3222111112356889999999999986653211
Q ss_pred --------CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc-CCeeeEEEEeccCCeE--
Q 004735 270 --------WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK-NGFWNLHKWIESNNEV-- 337 (732)
Q Consensus 270 --------~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~-~g~~~l~~~d~~~g~~-- 337 (732)
+...++|+..+. ++......++...+.. ........++||+ +++..... .....++.++......
T Consensus 197 ~~~~~~~~~~~~~v~~h~lg-t~~~~d~~v~~e~d~~--~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~ 273 (430)
T d1qfma1 197 SDGTETSTNLHQKLYYHVLG-TDQSEDILCAEFPDEP--KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (430)
T ss_dssp CSSSCCCCCCCCEEEEEETT-SCGGGCEEEECCTTCT--TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred ccccccccCCcceEEEEECC-CCccccccccccccCC--ceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccc
Confidence 123468888876 4433334455544311 2233455788999 54444331 2345678887654321
Q ss_pred ------EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE-EEEEEEECCCCc---eEEecc-CCCceE-E
Q 004735 338 ------LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR-SYLGILDDFGHS---LSLLDI-PFTDID-N 405 (732)
Q Consensus 338 ------~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~-~~ly~~~~~~~~---~~~lt~-~~~~v~-~ 405 (732)
..+.... ...+ .+... .++.+|+.++.++. ..|+.++++... ++.+-. .+..+. .
T Consensus 274 ~~~~~~~~~~~~~----~~~~-----~~~~~----~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~ 340 (430)
T d1qfma1 274 TGILKWVKLIDNF----EGEY-----DYVTN----EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEW 340 (430)
T ss_dssp CSSCCCEEEECSS----SSCE-----EEEEE----ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEE
T ss_pred ccccceeEeeccc----ccce-----EEEec----CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeee
Confidence 1111110 0000 01111 56678877776543 679999887643 344433 344332 2
Q ss_pred e-eEeCCEEEEEEeCCCCCcEEEEEEcCCCccee
Q 004735 406 I-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA 438 (732)
Q Consensus 406 ~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~ 438 (732)
. ...++.+++ ....+....|+++++++++...
T Consensus 341 ~~~~~~~~lvl-~~~~~~~~~l~v~~~~~~~~~~ 373 (430)
T d1qfma1 341 VACVRSNFLVL-CYLHDVKNTLQLHDLATGALLK 373 (430)
T ss_dssp EEEETTTEEEE-EEEETTEEEEEEEETTTCCEEE
T ss_pred EEEEECCEEEE-EEEcCCEeEEEEEECCCCcEEE
Confidence 2 334455544 4445677789999999887543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.51 E-value=4.9e-06 Score=84.75 Aligned_cols=173 Identities=10% Similarity=-0.056 Sum_probs=95.7
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCC--C
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--D 271 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~--~ 271 (732)
...++||||++++.....+... ..+||++|.++++. +.++..+. ...+.|||||++|++.........+ .
T Consensus 24 ~~~a~spdg~~~~~~~~~~~~~----~~~v~v~D~~tg~~--~~~~~~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAHHSA----IIQQWVLDAGSGSI--LGHVNGGF--LPNPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred cccccCCCCCEEEEEcccccCC----CceEEEEECCCCCE--EEEEeCCC--CccEEEcCCCCEEEEEeecCCccccccc
Confidence 4567999999976653322211 36899999999872 23343322 2368999999999987644332111 2
Q ss_pred ccEEEEEEecCCCceeeeEEecCCCCC-ccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCC
Q 004735 272 KAELWVGYISENGDVYKRVCVAGFDPT-IVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~~~~~~~~~~~-~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~ 349 (732)
...|.++|+. +++............. -........|++||+ +++.... ....+..++..+++........ .
T Consensus 96 ~~~v~v~D~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~---~- 168 (373)
T d2madh_ 96 TDYVEVFDPV-TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA--AGPAVGLVVQGGSSDDQLLSSP---T- 168 (373)
T ss_pred ceEEEEEECC-CCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc--CCCceEEeeccCCeEEEEeccc---e-
Confidence 3568999998 7766332222211100 001234578999999 5544333 2233445555555443322110 1
Q ss_pred CceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 350 ~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
...+.+ +++.++++...++. +++++..+++..
T Consensus 169 --------~~~~s~---~g~~~~v~~~~dg~--~~~~~~~~~~~~ 200 (373)
T d2madh_ 169 --------CYHIHP---GAPSTFYLLCAQGG--LAKTDHAGGAAG 200 (373)
T ss_pred --------eEEEec---CCCcEEEEEcCCCe--EEEEEcCCceee
Confidence 122222 66777777666665 444566666544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.51 E-value=1.1e-05 Score=84.11 Aligned_cols=106 Identities=7% Similarity=-0.118 Sum_probs=68.0
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
++++...++.|.++|+.+ ++. ..|..+ .....++|||||++++.. ... ..|.++|+++++...
T Consensus 34 ~~V~~~~dg~v~vwD~~t--~~~~~~l~~g-----~~~~~vafSPDGk~l~~~-~~d--------~~v~vwd~~t~~~~~ 97 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDS--KKIVKVIDTG-----YAVHISRMSASGRYLLVI-GRD--------ARIDMIDLWAKEPTK 97 (426)
T ss_dssp EEEEETTTTEEEEEETTT--CSEEEEEECC-----SSEEEEEECTTSCEEEEE-ETT--------SEEEEEETTSSSCEE
T ss_pred EEEEEcCCCEEEEEECCC--CcEEEEEeCC-----CCeeEEEECCCCCEEEEE-eCC--------CCEEEEEccCCceeE
Confidence 345566778999999998 543 444433 123567899999986544 322 478899999886111
Q ss_pred cEEcccCC---CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce
Q 004735 236 PKVLVSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV 286 (732)
Q Consensus 236 ~~~lt~~~---~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~ 286 (732)
...+..+. .....+.|||||++|+..... ...+.++|.. +++.
T Consensus 98 ~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~-------~~~v~i~d~~-~~~~ 143 (426)
T d1hzua2 98 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYW-------PPQFAIMDGE-TLEP 143 (426)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-------SSEEEEEETT-TCCE
T ss_pred EEEEeCCCCCcceEEeeeecCCCCEEEEeecC-------CCeEEEEcCC-ccce
Confidence 11222222 234578999999998765522 2347888887 6665
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.47 E-value=9.8e-08 Score=103.43 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=85.4
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-cc--HHH--HHHHHCCCEEEEEcCCCCC-CC--ChhhHH
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LN--LSI--QYWTSRGWAFVDVNYGGST-GY--GREFRE 544 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~--~~~--~~l~~~G~~v~~~d~rG~~-g~--g~~~~~ 544 (732)
--++.-+|.|+... .+++.|+||++|||........ +. .+. ..++.++++|+.+|||-.. |+ ......
T Consensus 96 DCL~LnI~~P~~~~----~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~ 171 (534)
T d1llfa_ 96 DCLTINVVRPPGTK----AGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA 171 (534)
T ss_dssp CCCEEEEEECTTCC----TTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred cCCEEEEEECCCCC----CCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCccccc
Confidence 34677778886532 3567899999999864332222 21 222 2345679999999999521 11 111122
Q ss_pred hhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh--C-------CCcceEEEeecCc
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA--F-------RDTFKAGASLYGV 607 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~--~-------p~~~~a~v~~~~~ 607 (732)
...+++ -+.|+..|++|+.+. -.-|+++|.|+|+|.||..+...+. . ..+|+.+|+.+|.
T Consensus 172 ~~~gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 172 EGSGNA---GLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HTCTTH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cccccc---chhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 223333 478999999999875 3468999999999999998765553 1 1269999999974
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.45 E-value=1.1e-07 Score=103.26 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=86.5
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-c--cHH-HH-HHHHCCCEEEEEcCCCC-CCC--ChhhHH
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-L--NLS-IQ-YWTSRGWAFVDVNYGGS-TGY--GREFRE 544 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~--~~~-~~-~l~~~G~~v~~~d~rG~-~g~--g~~~~~ 544 (732)
.-++.-+|.|++.. +.++.|+||++|||........ + ... .. ..+..+++|+.++||-. -|+ ..+...
T Consensus 104 DCL~LnI~~P~~~~----~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~ 179 (544)
T d1thga_ 104 DCLYLNVFRPAGTK----PDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA 179 (544)
T ss_dssp CCCEEEEEEETTCC----TTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred cCCEEEEEECCCCC----CCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhc
Confidence 34677778886532 3567899999999865433222 1 222 22 23467899999999942 111 112222
Q ss_pred hhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhCC---------CcceEEEeecCc
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAFR---------DTFKAGASLYGV 607 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~p---------~~~~a~v~~~~~ 607 (732)
...+++| +.|...|++|+.++ -.-|+++|.|+|+|.||..+..++..| .+|+.+|+.+|.
T Consensus 180 ~~~gN~G---l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 180 EGNTNAG---LHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp HTCTTHH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred cccccHH---HHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 2234444 78999999999875 456899999999999999887776532 389999999874
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.45 E-value=8.2e-08 Score=103.64 Aligned_cols=128 Identities=19% Similarity=0.155 Sum_probs=84.0
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-cccHHHHHHH-HCCCEEEEEcCCCC-CCC--ChhhHHhhcc
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWT-SRGWAFVDVNYGGS-TGY--GREFRERLLG 548 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~~~~~~~~l~-~~G~~v~~~d~rG~-~g~--g~~~~~~~~~ 548 (732)
-+..-+|.|+... ...+.|++|++|||....... .+......++ ..+++|+.+|||-. -|+ .........+
T Consensus 80 CL~LnI~~P~~~~----~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~~~~~~ 155 (517)
T d1ukca_ 80 CLFINVFKPSTAT----SQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDL 155 (517)
T ss_dssp CCEEEEEEETTCC----TTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSSCT
T ss_pred CCEEEEEeCCCCC----CCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCcccccccccc
Confidence 3566677786532 245679999999986543332 2222222233 45789999999942 111 1111111122
Q ss_pred CCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh--CC---CcceEEEeecCcC
Q 004735 549 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA--FR---DTFKAGASLYGVA 608 (732)
Q Consensus 549 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~--~p---~~~~a~v~~~~~~ 608 (732)
++| +.|...|++|+.++ -.-|+++|.|+|+|.||..+...+. .+ .+|+.+|+.+|..
T Consensus 156 N~G---l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 156 NAG---LLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp THH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred chh---HHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 333 78999999999875 4568999999999999998876554 22 3899999999854
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=4.5e-05 Score=73.55 Aligned_cols=231 Identities=10% Similarity=0.007 Sum_probs=135.7
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-cc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~ 235 (732)
|+|++ ...|..+++++ .....+.+.. .......|++..++|+++-.. ...|++.++++... ..
T Consensus 4 Ll~s~--~~~I~~~~l~~--~~~~~~~~~~----~~~~~id~d~~~~~lYw~D~~--------~~~I~~~~l~~~~~~~~ 67 (266)
T d1ijqa1 4 LFFTN--RHEVRKMTLDR--SEYTSLIPNL----RNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSS 67 (266)
T ss_dssp EEEEC--BSSEEEEETTS--CCCEEEECSC----SSEEEEEEETTTTEEEEEETT--------TTEEEEEEC--------
T ss_pred EEEEC--CCeEEEEECCC--CcceeeeCCC----CceEEEEEEeCCCEEEEEECC--------CCEEEEEEecCCCCCcc
Confidence 56775 34599999997 6666665441 122445688999987765332 25788888875220 00
Q ss_pred cEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-
Q 004735 236 PKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 313 (732)
Q Consensus 236 ~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~- 313 (732)
.+. +..+.....+.++.+-++.|+|+.. ....|.+++++ +... ..++.... ..+..++..|...
T Consensus 68 ~~~~~~~~~~~p~glAvD~~~~~lY~~d~-------~~~~I~v~~~~-g~~~--~~~~~~~~----~~P~~l~vd~~~g~ 133 (266)
T d1ijqa1 68 YDTVISRDIQAPDGLAVDWIHSNIYWTDS-------VLGTVSVADTK-GVKR--KTLFRENG----SKPRAIVVDPVHGF 133 (266)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEET-------TTTEEEEEETT-SSSE--EEEEECTT----CCEEEEEEETTTTE
T ss_pred eEEEEeCCCCCcceEEEeeccceEEEEec-------CCCEEEeEecC-CceE--EEEEcCCC----CCcceEEEEcccCe
Confidence 222 3333333345677777899988752 23469999987 3332 22233322 3445667777555
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
+||+ +. .....|+++++++...+.+.... ...| ..+.+-+ .++.|||+.. +...|+.++++|...
T Consensus 134 ly~~-~~-~~~~~I~r~~~dGs~~~~l~~~~--~~~p------~gl~iD~---~~~~lYw~d~--~~~~I~~~~~dG~~~ 198 (266)
T d1ijqa1 134 MYWT-DW-GTPAKIKKGGLNGVDIYSLVTEN--IQWP------NGITLDL---LSGRLYWVDS--KLHSISSIDVNGGNR 198 (266)
T ss_dssp EEEE-EC-SSSCEEEEEETTSCCEEEEECSS--CSCE------EEEEEET---TTTEEEEEET--TTTEEEEEETTSCSC
T ss_pred EEEe-cc-CCCcceeEeccCCCceecccccc--ccee------eEEEeec---cccEEEEecC--CcCEEEEEECCCCCE
Confidence 6665 44 33457999999888777776431 1111 1122211 5778999853 345789999998776
Q ss_pred EEeccCC---CceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 394 SLLDIPF---TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 394 ~~lt~~~---~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.+.... .....+...++.+++.-. ....|++++..+++
T Consensus 199 ~~~~~~~~~~~~p~~lav~~~~ly~td~---~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 199 KTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTGS 240 (266)
T ss_dssp EEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTCC
T ss_pred EEEEeCCCcccccEEEEEECCEEEEEEC---CCCeEEEEECCCCc
Confidence 6554332 223445555677665443 23579999987765
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=2.5e-05 Score=77.94 Aligned_cols=205 Identities=8% Similarity=-0.051 Sum_probs=112.4
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCC----CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY----GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~----~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.++++...++.|.++|+..+ .....+.... ........+..|+|||++|+.+..... ..+.+++.+++
T Consensus 78 ~~lasgs~Dg~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~-------~~~~~~~~~~~ 149 (325)
T d1pgua1 78 QYLCSGDESGKVIVWGWTFD-KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD-------NFGVFISWDSG 149 (325)
T ss_dssp CEEEEEETTSEEEEEEEEEE-GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS-------CSEEEEETTTC
T ss_pred CEEEEEeCCCCEEEeeecCC-cceeeeecccccccccccCcEEEEEECCCCCccceeecccc-------ceEEEEeeccc
Confidence 56667777888888887541 1111111100 000123456789999999877765331 34566677766
Q ss_pred CccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE-ecCCCCCccccCcCceeCC
Q 004735 232 NIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 232 ~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~-~~~~~~~~~~~~~~~~wsp 310 (732)
+. ...+...........|+|++..++..... ...+.++|+. .++...... ..... ..+..++|+|
T Consensus 150 ~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-------d~~v~~~d~~-~~~~~~~~~~~~~~~----~~v~~v~~~p 215 (325)
T d1pgua1 150 NS--LGEVSGHSQRINACHLKQSRPMRSMTVGD-------DGSVVFYQGP-PFKFSASDRTHHKQG----SFVRDVEFSP 215 (325)
T ss_dssp CE--EEECCSCSSCEEEEEECSSSSCEEEEEET-------TTEEEEEETT-TBEEEEEECSSSCTT----CCEEEEEECS
T ss_pred cc--ceeeeecccccccccccccccceEEEeec-------cccccccccc-ccccceecccccCCC----CccEEeeecc
Confidence 51 33343334556678999999887654422 2347888876 554321111 11222 4466789999
Q ss_pred CCc-EEEEEeccCCeeeEEEEeccCCeEEEecc-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 311 Dg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|+. +++.... .+. |.++|..+++...... .........|+. .+. +++.|+ +...++.-+|| |+
T Consensus 216 d~~~~l~s~~~-d~~--i~iwd~~~~~~~~~l~~~~~~v~~~~~s~-----~~~----dg~~l~-s~s~D~~i~iw--d~ 280 (325)
T d1pgua1 216 DSGEFVITVGS-DRK--ISCFDGKSGEFLKYIEDDQEPVQGGIFAL-----SWL----DSQKFA-TVGADATIRVW--DV 280 (325)
T ss_dssp TTCCEEEEEET-TCC--EEEEETTTCCEEEECCBTTBCCCSCEEEE-----EES----SSSEEE-EEETTSEEEEE--ET
T ss_pred ccceecccccc-ccc--eeeeeeccccccccccccccccccceeee-----ecc----CCCEEE-EEeCCCeEEEE--EC
Confidence 865 6665554 444 6666887776544332 222223333332 121 555554 55567765555 77
Q ss_pred CCCce-EEec
Q 004735 389 FGHSL-SLLD 397 (732)
Q Consensus 389 ~~~~~-~~lt 397 (732)
.+++. +.++
T Consensus 281 ~~~~~~~~~~ 290 (325)
T d1pgua1 281 TTSKCVQKWT 290 (325)
T ss_dssp TTTEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 77664 3344
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.40 E-value=9.2e-08 Score=103.69 Aligned_cols=126 Identities=19% Similarity=0.169 Sum_probs=85.5
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc--cHHHHHHHHCCCEEEEEcCCCC-CCCCh-hhHHhhccC
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL--NLSIQYWTSRGWAFVDVNYGGS-TGYGR-EFRERLLGR 549 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~--~~~~~~l~~~G~~v~~~d~rG~-~g~g~-~~~~~~~~~ 549 (732)
-+..-+|.|+. ..++.|++|++|||......... ......+++.+++|+.+|||-. -|+-. .-.....++
T Consensus 91 CL~LnI~~P~~------~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vvvVt~nYRlg~~GFl~~~~~~~~~gN 164 (532)
T d1ea5a_ 91 CLYLNIWVPSP------RPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQEAPGN 164 (532)
T ss_dssp CCEEEEEECSS------CCSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCTTCSSSCSC
T ss_pred CCEEEEEeCCC------CCCCCcEEEEEEcCCcccccCCccccCcchhhcccCccEEEEeeccccccccccccccCCCCc
Confidence 46667788875 24678999999998643222211 1123345678999999999942 11100 000012223
Q ss_pred CCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcC
Q 004735 550 WGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 608 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~ 608 (732)
+ -+.|...|++|+.++ -.-|+++|.|+|+|+||..+..++. ...+|..+|+.++..
T Consensus 165 ~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 165 V---GLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp H---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred c---cchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 3 389999999999875 4568999999999999999887776 345899999988754
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=1.2e-07 Score=103.07 Aligned_cols=127 Identities=18% Similarity=0.171 Sum_probs=84.5
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc--ccHHHHHHHHCCCEEEEEcCCCC-CCCCh-hhHHhhccC
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI--LNLSIQYWTSRGWAFVDVNYGGS-TGYGR-EFRERLLGR 549 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~--~~~~~~~l~~~G~~v~~~d~rG~-~g~g~-~~~~~~~~~ 549 (732)
-+..-+|.|... ..++.|+||++|||........ ........+..+++|+.+|||-. -|+-. .......++
T Consensus 96 CL~LnI~~P~~~-----~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vvvVt~nYRlg~~Gfl~~~~~~~~~gN 170 (542)
T d2ha2a1 96 CLYLNVWTPYPR-----PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPGSREAPGN 170 (542)
T ss_dssp CCEEEEEEESSC-----CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTTCSSCCSC
T ss_pred CCEEEEEecCCC-----CCCCCcEEEEEEECccccccCcccccCchhhhhhccceeEeeeeeccceeeecccccccCCCc
Confidence 466677778642 2567899999999864322221 11112233467999999999931 11100 000112223
Q ss_pred CCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCcC
Q 004735 550 WGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA 608 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~~ 608 (732)
.-+.|+..|++|+.+. -.-|+++|.|+|+|.||..+..++.. ..+|..+|+.+|..
T Consensus 171 ---~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 171 ---VGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred ---CCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 3388999999999875 44689999999999999999887763 45899999998753
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.35 E-value=1e-05 Score=81.51 Aligned_cols=264 Identities=9% Similarity=0.005 Sum_probs=130.2
Q ss_pred ceEEcC-CCcEEEEeecCCCC----CceEEEEcCCCCCCCCcccCCCCCcccccccc-cCCceeEEECCEEEEEeCC-CC
Q 004735 93 GTAVDG-HGRLIWLESRPTEA----GRGVLVKEPAKAGDEPSDITPKEYAVRTTAQE-YGGGAFRIFGDTVIFSNYK-DQ 165 (732)
Q Consensus 93 ~~~~~p-g~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~-~g~~~~~~~~~~i~f~~~~-~~ 165 (732)
.++||| |+.+|+........ ..-.+..++..++ +...........+..+.. .....|+.++..+++.+.. +.
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~ 129 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC-CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence 689999 88888865321100 0113455566544 332221111011111111 1122334445566665533 45
Q ss_pred eEEEEeCCCCCCCce-ecCCCCCCCCe----EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc
Q 004735 166 RLYKHSIDSKDSSPL-PITPDYGEPLV----SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~-~lt~~~~~~~~----~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt 240 (732)
.+++++..+ ++.. .+.... .... ......+++||+.+++..... ..+.+++..... .
T Consensus 130 ~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~~~~v~~~~~--------~~~~~~~~~~~~---~---- 191 (355)
T d2bbkh_ 130 AVGVVDLEG--KAFKRMLDVPD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTE--------GTPEITHTEVFH---P---- 191 (355)
T ss_dssp EEEEEETTT--TEEEEEEECCS-EEEEEEEETTEEEEEETTSCEEEEECCSS--------SCCEEEECCCCS---C----
T ss_pred eeeeeecCC--CcEeeEEecCC-cceEeecCCcceEEEcCCCCEEEEEecCC--------CeEEEEeccccc---c----
Confidence 788888876 4432 222210 0000 012246888988755443322 233344444332 1
Q ss_pred cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC-----Cc-cccCcCceeCCCCc-
Q 004735 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-----TI-VESPTEPKWSSKGE- 313 (732)
Q Consensus 241 ~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~-----~~-~~~~~~~~wspDg~- 313 (732)
........+.+++++..+++.. ....++++++. +++...+........ .+ ......+.+++||+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~ 262 (355)
T d2bbkh_ 192 EDEFLINHPAYSQKAGRLVWPT--------YTGKIHQIDLS-SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262 (355)
T ss_dssp TTSCBCSCCEEETTTTEEEEEB--------TTSEEEEEECT-TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred eecceeeeccccCCCCeEEEec--------CCCeEEEEecC-CCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence 1111233456788888888876 34568999988 565422222111100 00 01234578999999
Q ss_pred EEEEEecc------CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 314 LFFVTDRK------NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 314 l~~~~~~~------~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
+++..... .+...|+.+|+.+++...-.+........ .|.+ |++.+++.+.. +...|+++|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~---------a~sp---DG~~~l~v~~~-~d~~i~v~D 329 (355)
T d2bbkh_ 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSI---------NVSQ---DEKPLLYALST-GDKTLYIHD 329 (355)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEE---------EECC---SSSCEEEEEET-TTTEEEEEE
T ss_pred EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEE---------EEcC---CCCeEEEEEEC-CCCEEEEEE
Confidence 55544331 13457899999887654332222122223 3433 77765555532 224578889
Q ss_pred CCCCce-EEec
Q 004735 388 DFGHSL-SLLD 397 (732)
Q Consensus 388 ~~~~~~-~~lt 397 (732)
.++++. +.|.
T Consensus 330 ~~tg~~~~~i~ 340 (355)
T d2bbkh_ 330 AESGEELRSVN 340 (355)
T ss_dssp TTTCCEEEEEC
T ss_pred CCCCCEEEEEe
Confidence 988875 4454
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.35 E-value=3e-05 Score=75.83 Aligned_cols=236 Identities=11% Similarity=0.056 Sum_probs=126.3
Q ss_pred CCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 146 g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
.+.+++++++ ..+++...++.|.++|+++ ++..+..... .........|+|||+.+ .+..+ ..+.
T Consensus 14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~--~~~~~~~~~~--h~~~v~~v~~~~~g~~~-~~~~d---------~~v~ 79 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAEGHINSWDIST--GISNRVFPDV--HATMITGIKTTSKGDLF-TVSWD---------DHLK 79 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEECSSCS--CSSCEEEEEECTTSCEE-EEETT---------TEEE
T ss_pred CcEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEcCC--CCCcEEEEEeeccceee-cccce---------eeEE
Confidence 3445555544 5566666788899999987 5544433211 13345677899999854 33331 4667
Q ss_pred EEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccC
Q 004735 225 AIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~ 303 (732)
+++..+........+. ..........|||||+.++... ...+.+++.. +. ...... ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~---------~~~i~~~~~~---~~--~~~~~~------~~~ 139 (299)
T d1nr0a2 80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC---------YKHIAIYSHG---KL--TEVPIS------YNS 139 (299)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE---------SSEEEEEETT---EE--EEEECS------SCE
T ss_pred EeccCCccccccccccccccccccccccccccccccccc---------cccccccccc---cc--cccccc------ccc
Confidence 7776654310011111 1223344568999999776554 1236666532 22 222222 223
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec--ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
..+.|+||++++++... .+ .|..+|+.+++...+. .....+. .+.|.+ +++.| ++...++.
T Consensus 140 ~~~~~s~~~~~l~~g~~-dg--~i~~~d~~~~~~~~~~~~~~~~~i~---------~~~~~~---~~~~l-~~~~~d~~- 202 (299)
T d1nr0a2 140 SCVALSNDKQFVAVGGQ-DS--KVHVYKLSGASVSEVKTIVHPAEIT---------SVAFSN---NGAFL-VATDQSRK- 202 (299)
T ss_dssp EEEEECTTSCEEEEEET-TS--EEEEEEEETTEEEEEEEEECSSCEE---------EEEECT---TSSEE-EEEETTSC-
T ss_pred ccccccccccccccccc-cc--ccccccccccccccccccccccccc---------cccccc---ccccc-cccccccc-
Confidence 56789999995545444 44 4556677777655443 1111111 233432 55544 45555665
Q ss_pred EEEEEECCCCceEE----eccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 382 YLGILDDFGHSLSL----LDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 382 ~ly~~~~~~~~~~~----lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
|++++..++.... +......+..+ ..+++.+++.++.. ..++++|+.+++.
T Consensus 203 -i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d---g~i~iwd~~~~~~ 258 (299)
T d1nr0a2 203 -VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD---NSVIVWNMNKPSD 258 (299)
T ss_dssp -EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTCTTS
T ss_pred -cccccccccccccccccccccccccccccccccccceEEEcCC---CEEEEEECCCCCc
Confidence 4445665554322 22224456666 34556666655543 3578888877653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.34 E-value=5.9e-06 Score=81.86 Aligned_cols=206 Identities=9% Similarity=-0.007 Sum_probs=117.7
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeEE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l~ 168 (732)
.+++++++|.++||+.+... + .|++.+++ ++.+.+..... ....++++.+ .+++.....+.++
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~---~--~I~~i~p~--g~~~~~~~~~~---------~~~gla~~~dG~l~v~~~~~~~~~ 92 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEV---G--EIVSITPD--GNQQIHATVEG---------KVSGLAFTSNGDLVATGWNADSIP 92 (302)
T ss_dssp CEEEEEECTTSCEEEEETTT---T--EEEEECTT--CCEEEEEECSS---------EEEEEEECTTSCEEEEEECTTSCE
T ss_pred CcCCEEECCCCCEEEEeCCC---C--EEEEEeCC--CCEEEEEcCCC---------CcceEEEcCCCCeEEEecCCceEE
Confidence 46789999956799887643 3 57888776 34333322110 1123344433 5666666666777
Q ss_pred EEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC------
Q 004735 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG------ 242 (732)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~------ 242 (732)
++++.+..+..+.+..... ....++..+++||+. |+.+.. ...+|.++..++. .......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~n~i~~~~~g~~--~v~~~~-------~~~i~~~~~~~~~---~~~~~~~~~~~~~ 158 (302)
T d2p4oa1 93 VVSLVKSDGTVETLLTLPD--AIFLNGITPLSDTQY--LTADSY-------RGAIWLIDVVQPS---GSIWLEHPMLARS 158 (302)
T ss_dssp EEEEECTTSCEEEEEECTT--CSCEEEEEESSSSEE--EEEETT-------TTEEEEEETTTTE---EEEEEECGGGSCS
T ss_pred EEEecccccceeeccccCC--ccccceeEEccCCCE--Eeeccc-------cccceeeeccCCc---ceeEecCCcccee
Confidence 7776542144444433211 233467789999964 333322 2688999988765 3322111
Q ss_pred ---CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEe
Q 004735 243 ---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 319 (732)
Q Consensus 243 ---~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~ 319 (732)
......-..++|+.++++.... ..+|+.++.+..+........... .....+++++||+||+...
T Consensus 159 ~~~~~~~~~ngi~~~~~~l~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~-----~~pdgia~d~dG~l~va~~ 226 (302)
T d2p4oa1 159 NSESVFPAANGLKRFGNFLYVSNTE-------KMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATH 226 (302)
T ss_dssp STTCCSCSEEEEEEETTEEEEEETT-------TTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCEEEECB
T ss_pred eccCcccccccccccCCceeeecCC-------CCeEEeccccccccccccccccCC-----CCCcceEECCCCCEEEEEc
Confidence 0111111345677888777632 456999998844544444444333 4457899999998765543
Q ss_pred ccCCeeeEEEEeccCCeEEEe
Q 004735 320 RKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 320 ~~~g~~~l~~~d~~~g~~~~l 340 (732)
. . ..|++++++++..+..
T Consensus 227 ~-~--~~V~~i~p~G~~~~~~ 244 (302)
T d2p4oa1 227 I-Y--NSVVRIAPDRSTTIIA 244 (302)
T ss_dssp T-T--CCEEEECTTCCEEEEE
T ss_pred C-C--CcEEEECCCCCEEEEE
Confidence 3 2 4599999876544433
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=2e-07 Score=100.77 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=84.2
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-c-HHHHHHHHCCCEEEEEcCCCC-CCC-ChhhHHhhccC
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-N-LSIQYWTSRGWAFVDVNYGGS-TGY-GREFRERLLGR 549 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~-~~~~~l~~~G~~v~~~d~rG~-~g~-g~~~~~~~~~~ 549 (732)
-+..-+|.|.. ..++.|+||++|||......... . ......++.+++|+.++||-. -|+ ..+-.....++
T Consensus 89 CL~lnI~~P~~------~~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~~Gfl~~~~~~~~~gN 162 (526)
T d1p0ia_ 89 CLYLNVWIPAP------KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPGNPEAPGN 162 (526)
T ss_dssp CCEEEEEEESS------CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTTCTTSCSC
T ss_pred CCEEEEEeCCC------CCCCCceEEEEECCCcccccCcccccCccccccccceeEEecccccccccccCCCCccccccc
Confidence 46667778865 24568999999998644322221 1 122233567999999999942 110 00000112223
Q ss_pred CCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcC
Q 004735 550 WGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 608 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~ 608 (732)
.-+.|...|++|+.+. -.-|+++|.|+|+|+||..+..++. ...+|+.+|+.++..
T Consensus 163 ---~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 163 ---MGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred ---ccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 3489999999999775 4568999999999999999977765 345889999887653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=3.5e-05 Score=74.15 Aligned_cols=235 Identities=11% Similarity=0.012 Sum_probs=138.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCC--CCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG--EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~--~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
-|+|+. .+.|..+++++ .....+..... .+........+++..++|+++... ...|++++++++.
T Consensus 3 fLl~s~--~~~I~~~~ld~--~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~--------~~~I~~~~l~g~~- 69 (263)
T d1npea_ 3 HLLFAQ--TGKIERLPLER--NTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS--------EPSIGRASLHGGE- 69 (263)
T ss_dssp EEEEEE--EEEEEEEEESS--SCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT--------TTEEEEEESSSCC-
T ss_pred EEEEeC--CCeEEEEECCC--ccccccccccccccCCCcEEEEEEEeCCCEEEEEECC--------CCeEEEEEcccCC-
Confidence 467775 34699999975 33332221100 001112335688888987665332 2689999999876
Q ss_pred cccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 234 QEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 234 ~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.+.+. .+.....+.++..-++.|+|... ....|.+++++ +... ..+....- ..+..++..|..
T Consensus 70 --~~~v~~~~~~~p~~iAvD~~~~~lY~~d~-------~~~~I~~~~~d-g~~~--~~l~~~~l----~~p~~l~vdp~~ 133 (263)
T d1npea_ 70 --PTTIIRQDLGSPEGIALDHLGRTIFWTDS-------QLDRIEVAKMD-GTQR--RVLFDTGL----VNPRGIVTDPVR 133 (263)
T ss_dssp --CEEEECTTCCCEEEEEEETTTTEEEEEET-------TTTEEEEEETT-SCSC--EEEECSSC----SSEEEEEEETTT
T ss_pred --cEEEEEeccccccEEEEeccCCeEEEecc-------CCCEEEEEecC-CceE--EEEecccc----cCCcEEEEeccc
Confidence 55554 33333445566666888988762 23469999987 3322 23333322 345567777766
Q ss_pred c-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 313 ~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
. +||+... .+...|+++++++...+.+.... ...|. .+.+-. .++.|||+.. +...|.+++++++
T Consensus 134 g~ly~t~~~-~~~~~I~r~~~dG~~~~~i~~~~--~~~P~------glaiD~---~~~~lYw~d~--~~~~I~~~~~~g~ 199 (263)
T d1npea_ 134 GNLYWTDWN-RDNPKIETSHMDGTNRRILAQDN--LGLPN------GLTFDA---FSSQLCWVDA--GTHRAECLNPAQP 199 (263)
T ss_dssp TEEEEEECC-SSSCEEEEEETTSCCCEEEECTT--CSCEE------EEEEET---TTTEEEEEET--TTTEEEEEETTEE
T ss_pred CcEEEeecC-CCCcEEEEecCCCCCceeeeeec--ccccc------eEEEee---cCcEEEEEeC--CCCEEEEEECCCC
Confidence 6 6655433 45567999999887766665321 12221 122211 5778998753 4457889999887
Q ss_pred ceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 392 SLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 392 ~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..+.+-.+......+...++.+++.-.. ...|+++|..+++.
T Consensus 200 ~~~~v~~~~~~P~~lav~~~~lYwtd~~---~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 200 GRRKVLEGLQYPFAVTSYGKNLYYTDWK---TNSVIAMDLAISKE 241 (263)
T ss_dssp EEEEEEECCCSEEEEEEETTEEEEEETT---TTEEEEEETTTTEE
T ss_pred CeEEEECCCCCcEEEEEECCEEEEEECC---CCEEEEEECCCCcc
Confidence 7766655444444555556666555433 34799999887763
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.31 E-value=0.0001 Score=64.96 Aligned_cols=204 Identities=15% Similarity=0.131 Sum_probs=129.8
Q ss_pred ECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 153 FGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 153 ~~~~i~f~~~~~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
.++.++|.....+ ++|++ .+ ++..+||..+- ....+| .+.=.+|.|+++-..+.. .+.||..++..
T Consensus 24 ~~d~ll~~~~seG~vni~~l--~g--~~~vkLtkePI---~~~~~P--k~~ldfi~f~RDV~kGkE---~Hai~~~Nlk~ 91 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLY--DG--GETVKLNREPI---NSVLDP--HYGVGRVILVRDVSKGAE---QHALFKVNTSR 91 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEE--SS--SSCEECCSSCC---SEECEE--CTTBSEEEEEEECSTTSC---CEEEEEEETTS
T ss_pred cCCcEEEEEeccceEEEEEE--eC--CEEEEEecccc---cCcCCC--ccCcceEEEEeehhcCcc---eeeEEEEccCC
Confidence 3566777665555 45555 46 78899997631 122222 233357899988654332 48999999982
Q ss_pred -CCccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 231 -QNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 231 -~~~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
|+ ..++.... -.. ....-|++.++|+...+ +.+.||+++ +|+++++..++.. ..+.+.
T Consensus 92 ~GE---E~~i~spk~vRI--~S~~yddk~vvF~Gase-----d~~~LYvie---gGklrkL~~vPpF-----sFVtDI-- 151 (313)
T d2hu7a1 92 PGE---EQRLEAVKPMRI--LSGVDTGEAVVFTGATE-----DRVALYALD---GGGLRELARLPGF-----GFVSDI-- 151 (313)
T ss_dssp TTC---EEECTTSCSBEE--EEEEECSSCEEEEEECS-----SCEEEEEEE---TTEEEEEEEESSC-----EEEEEE--
T ss_pred CCe---eeEecCCceEEE--EEeeecCceEEEecccC-----CceEEEEEe---CCceeeeccCCCc-----ceEEec--
Confidence 44 45554332 112 22344899999998655 456677764 7888777766655 222221
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
.|+ +.=..--+.+...++..|+.+|..+.+++.+..+..+..+ .|+.+.--.+.-|...+..+|
T Consensus 152 --~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~-------------~gnKV~sdyEt~gEsywit~D 216 (313)
T d2hu7a1 152 --RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASIS-------------PGMKVTAGLETAREARLVTVD 216 (313)
T ss_dssp --ETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEEEEEC-------------TTSCEEEEEEESSCEEEEEEC
T ss_pred --cCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCcccceeEc-------------cCceeeeccCCCCceEEEEEe
Confidence 244 3322222245566889999999999999887666655444 566675555667777766889
Q ss_pred CCCCceEEeccCCCce
Q 004735 388 DFGHSLSLLDIPFTDI 403 (732)
Q Consensus 388 ~~~~~~~~lt~~~~~v 403 (732)
+.+++..++..+..++
T Consensus 217 ~~s~~yerve~P~kd~ 232 (313)
T d2hu7a1 217 PRDGSVEDLELPSKDF 232 (313)
T ss_dssp TTTCCEEECCCSSCHH
T ss_pred cccCceeeeecCcccc
Confidence 9999999998875543
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.31 E-value=8.2e-08 Score=105.13 Aligned_cols=129 Identities=18% Similarity=0.186 Sum_probs=83.0
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc---c----cHHHHHHH-HCCCEEEEEcCCCC-CCCChhhHH
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---L----NLSIQYWT-SRGWAFVDVNYGGS-TGYGREFRE 544 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~---~----~~~~~~l~-~~G~~v~~~d~rG~-~g~g~~~~~ 544 (732)
.+..-+|.|.... ...++.|+||++|||........ + ......++ ..+++|+.+|||-. -|+-.....
T Consensus 80 CL~LNI~~P~~~~---~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~~GFl~~~~~ 156 (579)
T d2bcea_ 80 CLYLNIWVPQGRK---EVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDS 156 (579)
T ss_dssp CCEEEEEEEECSS---SCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSST
T ss_pred CCEEEEEECCCCC---CCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeeccccccccccccccc
Confidence 4666777775421 02456899999999853221111 0 01123344 45799999999942 111000011
Q ss_pred hhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcC
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 608 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~ 608 (732)
...+++| +.|...|++|+.++ -.-|+++|.|+|+|.||..+...+. ...+|+.+|+.+|..
T Consensus 157 ~~~gN~G---l~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 157 NLPGNYG---LWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp TCCCCHH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred CCCccch---hhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 1223333 89999999999875 4568999999999999999987665 456899999999753
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=1.7e-05 Score=79.23 Aligned_cols=245 Identities=7% Similarity=-0.021 Sum_probs=126.0
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCC-CCceecCCCCCCCCeEeeceeecC--CCCEEEEEEeccCCCCCCceeEEEE
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKD-SSPLPITPDYGEPLVSYADGIFDP--RFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~-~~~~~lt~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
+|.+.++.+++.......|+.++..... .....++.. ........+|+| +|++|+.... + ..|.+
T Consensus 24 ~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh---~~~~v~~v~fsP~~~g~~lasgs~-D--------g~i~i 91 (325)
T d1pgua1 24 SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH---GSSVVTTVKFSPIKGSQYLCSGDE-S--------GKVIV 91 (325)
T ss_dssp EEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTT---TTSCEEEEEECSSTTCCEEEEEET-T--------SEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCC---CCCCEEEEEEeeCCCCCEEEEEeC-C--------CCEEE
Confidence 3444566777765333233444433210 111223322 123356678998 5565443332 2 35666
Q ss_pred EEcCCCCccccEEc--------ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 226 IALNGQNIQEPKVL--------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 226 ~d~~~~~~~~~~~l--------t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
+|+..++. ...+ ......+....|||||++|+....+... .+.+.+.+ +|+. +..+.+..
T Consensus 92 Wd~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~------~~~~~~~~-~~~~--~~~~~~h~- 159 (325)
T d1pgua1 92 WGWTFDKE--SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN------FGVFISWD-SGNS--LGEVSGHS- 159 (325)
T ss_dssp EEEEEEGG--GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC------SEEEEETT-TCCE--EEECCSCS-
T ss_pred eeecCCcc--eeeeecccccccccccCcEEEEEECCCCCccceeeccccc------eEEEEeec-cccc--ceeeeecc-
Confidence 66654330 1111 1112335567899999999887744322 26677777 6654 44455543
Q ss_pred CccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEE
Q 004735 298 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~ 376 (732)
..+..+.|+|++. ++..... .+. +..++...++...-........... ..+.|.| +++.++++..
T Consensus 160 ---~~v~~~~~~~~~~~~~~~~~~-d~~--v~~~d~~~~~~~~~~~~~~~~~~~v-----~~v~~~p---d~~~~l~s~~ 225 (325)
T d1pgua1 160 ---QRINACHLKQSRPMRSMTVGD-DGS--VVFYQGPPFKFSASDRTHHKQGSFV-----RDVEFSP---DSGEFVITVG 225 (325)
T ss_dssp ---SCEEEEEECSSSSCEEEEEET-TTE--EEEEETTTBEEEEEECSSSCTTCCE-----EEEEECS---TTCCEEEEEE
T ss_pred ---cccccccccccccceEEEeec-ccc--cccccccccccceecccccCCCCcc-----EEeeecc---ccceeccccc
Confidence 5567789999988 5655544 454 4445665554332221111111111 1234443 5566777777
Q ss_pred ECCEEEEEEEECCCCce-EEeccCCCceEE----eeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 377 QNGRSYLGILDDFGHSL-SLLDIPFTDIDN----ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 377 ~~g~~~ly~~~~~~~~~-~~lt~~~~~v~~----~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.++.-.|| +..+++. +.+......+.. +...+++.++.++.. ..|.++|+.+++.
T Consensus 226 ~d~~i~iw--d~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D---~~i~iwd~~~~~~ 285 (325)
T d1pgua1 226 SDRKISCF--DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD---ATIRVWDVTTSKC 285 (325)
T ss_dssp TTCCEEEE--ETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT---SEEEEEETTTTEE
T ss_pred cccceeee--eeccccccccccccccccccceeeeeccCCCEEEEEeCC---CeEEEEECCCCCE
Confidence 77765555 7767664 444433333322 222444555555433 3578889888764
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=0.0002 Score=69.48 Aligned_cols=267 Identities=9% Similarity=0.037 Sum_probs=137.8
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCC
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQ 165 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~ 165 (732)
...+.+++|+| ++.+ .+-. +++...+|..... .....+.. +...+.+..++++ .+++......
T Consensus 17 ~~~I~~l~~sp~~~~l-~s~s---~Dg~i~iWd~~~~--~~~~~~~~---------h~~~V~~~~~~~~~~~~~~~~~~~ 81 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVM-VSAS---EDATIKVWDYETG--DFERTLKG---------HTDSVQDISFDHSGKLLASCSADM 81 (317)
T ss_dssp SSCEEEEEECSSSSEE-EEEE---SSSCEEEEETTTC--CCCEEECC---------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCeEEEEEcCCCCEE-EEEe---CCCeEEEEECCCC--CEEEEEeC---------CCCcEEEEeeeccccccccccccc
Confidence 34567899999 5543 3333 3577777766433 22222211 1112233444433 3344444445
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
.+...+... ......... .........++|+++.++....+ ..+.++++.+++. ...+......
T Consensus 82 ~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d---------~~~~~~~~~~~~~--~~~~~~~~~~ 145 (317)
T d1vyhc1 82 TIKLWDFQG--FECIRTMHG---HDHNVSSVSIMPNGDHIVSASRD---------KTIKMWEVQTGYC--VKTFTGHREW 145 (317)
T ss_dssp CCCEEETTS--SCEEECCCC---CSSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTCCE--EEEEECCSSC
T ss_pred ccccccccc--ccccccccc---ccccceeeeccCCCceEEeeccC---------cceeEeeccccee--eeEEccCCCc
Confidence 566666654 333222222 12334566799999987655442 4777889887761 3334444455
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC-------------
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG------------- 312 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg------------- 312 (732)
.....|+|||+.|+..+. ...+.++++. +++. ...+.+.. ..+....|+|++
T Consensus 146 ~~~~~~~~~~~~l~~~~~--------d~~v~~~~~~-~~~~--~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~ 210 (317)
T d1vyhc1 146 VRMVRPNQDGTLIASCSN--------DQTVRVWVVA-TKEC--KAELREHR----HVVECISWAPESSYSSISEATGSET 210 (317)
T ss_dssp EEEEEECTTSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred ceeeecccCCCEEEEEeC--------CCeEEEEeec-ccee--eEEEecCC----CCceEEEEeeccccceeecccccee
Confidence 566789999998876652 2237777876 5543 23333322 223334444443
Q ss_pred -------cEEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 313 -------ELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 313 -------~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
.+++.... .+ .|..++..+++..... .....+. .+.+.+ +++ ++++...+|.-.|
T Consensus 211 ~~~~~~~~~~~~~~~-d~--~i~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~---~~~-~l~s~~~dg~i~i- 273 (317)
T d1vyhc1 211 KKSGKPGPFLLSGSR-DK--TIKMWDVSTGMCLMTLVGHDNWVR---------GVLFHS---GGK-FILSCADDKTLRV- 273 (317)
T ss_dssp ------CCEEEEEET-TS--EEEEEETTTTEEEEEEECCSSCEE---------EEEECS---SSS-CEEEEETTTEEEE-
T ss_pred eeeccCCceeEeccC-CC--EEEEEECCCCcEEEEEeCCCCCEE---------EEEECC---CCC-EEEEEECCCeEEE-
Confidence 22333322 23 4666677777643322 2211111 233332 454 4445556665444
Q ss_pred EEECCCCc-eEEeccCCCceEEe-eEeCCEEEEEEe
Q 004735 385 ILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 385 ~~~~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~ 418 (732)
+++.+++ +..+......|..+ ..+++.+++.++
T Consensus 274 -wd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 274 -WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308 (317)
T ss_dssp -ECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred -EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 4666655 45555556667777 344555555554
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.29 E-value=3.1e-07 Score=100.31 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCCCCEEEEEcCCCCCccCCc-ccHHHHHHH-HCCCEEEEEcCCCCC-CC---C----hhhHHhhccCCCcccHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGI-LNLSIQYWT-SRGWAFVDVNYGGST-GY---G----REFRERLLGRWGIVDVNDCCSC 561 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~-~~G~~v~~~d~rG~~-g~---g----~~~~~~~~~~~~~~~~~D~~~~ 561 (732)
.++.|+||++|||........ .......++ ..+.+|+.++||-.. |+ + ........+++ -+.|...|
T Consensus 136 ~~~lPV~V~ihGG~f~~Gs~~~~~~~~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~---Gl~Dq~~A 212 (571)
T d1dx4a_ 136 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNV---GLWDQALA 212 (571)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCH---HHHHHHHH
T ss_pred CCCCeEEEEEeCCCccCCCCcccccchhhhhhcCCeeEEeecceeccccccccccccccccccCCCCcc---cchHHHHH
Confidence 567899999999864322221 111123344 447999999999421 11 0 11111122333 38999999
Q ss_pred HHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcCC
Q 004735 562 ATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVAD 609 (732)
Q Consensus 562 i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~d 609 (732)
++|+.++ -.-|+++|.|+|+|.||..+..++. ...+|+.+|+.++...
T Consensus 213 L~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 213 IRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 9999886 3458999999999999999987766 3458999999887543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=8.9e-05 Score=72.17 Aligned_cols=246 Identities=10% Similarity=0.024 Sum_probs=134.3
Q ss_pred CceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 147 ~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
+.+..++++ .++++...++.|.++|+.++ .....+... ........|+|+|..++...... .+..
T Consensus 20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~h----~~~V~~~~~~~~~~~~~~~~~~~---------~~~~ 85 (317)
T d1vyhc1 20 VTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGH----TDSVQDISFDHSGKLLASCSADM---------TIKL 85 (317)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCC----SSCEEEEEECTTSSEEEEEETTS---------CCCE
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCC-CEEEEEeCC----CCcEEEEeeeccccccccccccc---------cccc
Confidence 344555433 55667667888999999872 333444433 33456778999999876654422 3344
Q ss_pred EEcCCCCccccEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 226 IALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 226 ~d~~~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
.+....+ ... +...........++||++.|+... ....+.++|+. +++. ...+.... ....
T Consensus 86 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~~~~~~~~-~~~~--~~~~~~~~----~~~~ 147 (317)
T d1vyhc1 86 WDFQGFE---CIRTMHGHDHNVSSVSIMPNGDHIVSAS--------RDKTIKMWEVQ-TGYC--VKTFTGHR----EWVR 147 (317)
T ss_dssp EETTSSC---EEECCCCCSSCEEEEEECSSSSEEEEEE--------TTSEEEEEETT-TCCE--EEEEECCS----SCEE
T ss_pred ccccccc---cccccccccccceeeeccCCCceEEeec--------cCcceeEeecc-ccee--eeEEccCC----Ccce
Confidence 4555444 222 223334455678999999988765 23457888988 6654 44444443 4556
Q ss_pred CceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeeccc-----------ceeeeeecCCCCEEE
Q 004735 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGIN-----------SYEIIQSHGEKNLIA 372 (732)
Q Consensus 305 ~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~-----------~~~~~~~~~~~~~l~ 372 (732)
...|++|++++++... .+. +..++..+++..... ..........|.+... ..... ..+.++
T Consensus 148 ~~~~~~~~~~l~~~~~-d~~--v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 220 (317)
T d1vyhc1 148 MVRPNQDGTLIASCSN-DQT--VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG----KPGPFL 220 (317)
T ss_dssp EEEECTTSSEEEEEET-TSC--EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----------CCEE
T ss_pred eeecccCCCEEEEEeC-CCe--EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeec----cCCcee
Confidence 7889999985555444 343 445555555433222 1111111111111100 00111 223345
Q ss_pred EEEEECCEEEEEEEECCCCce-EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 373 CSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 373 ~~s~~~g~~~ly~~~~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
++...++. |++++..+++. ..+......+..+ ..+++.+++.++.. ..|.++|+.+++.
T Consensus 221 ~~~~~d~~--i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~ 281 (317)
T d1vyhc1 221 LSGSRDKT--IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD---KTLRVWDYKNKRC 281 (317)
T ss_dssp EEEETTSE--EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT---TEEEEECCTTSCC
T ss_pred EeccCCCE--EEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECC---CeEEEEECCCCcE
Confidence 55555665 44457766654 3454455567666 44555565555533 3688888877653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=5e-05 Score=73.04 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=127.1
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
.+..++|+|++...+.|+++++++ +..+.+.... .....+.+++.-++.|+++... ...|.+.++++
T Consensus 44 D~~~~~iywsd~~~~~I~~~~l~g--~~~~~v~~~~---~~~p~~iAvD~~~~~lY~~d~~--------~~~I~~~~~dg 110 (263)
T d1npea_ 44 DCVDKVVYWTDISEPSIGRASLHG--GEPTTIIRQD---LGSPEGIALDHLGRTIFWTDSQ--------LDRIEVAKMDG 110 (263)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSS--CCCEEEECTT---CCCEEEEEEETTTTEEEEEETT--------TTEEEEEETTS
T ss_pred EeCCCEEEEEECCCCeEEEEEccc--CCcEEEEEec---cccccEEEEeccCCeEEEeccC--------CCEEEEEecCC
Confidence 334778999988888999999987 5555544321 1223556777778887666432 26899999998
Q ss_pred CCccccEEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 231 QNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 231 ~~~~~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
.. .+.|.. +.......++.|.+.+|+|..+.. ....|+.++++ +... ..+....- ..+..++.+
T Consensus 111 ~~---~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-----~~~~I~r~~~d-G~~~--~~i~~~~~----~~P~glaiD 175 (263)
T d1npea_ 111 TQ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-----DNPKIETSHMD-GTNR--RILAQDNL----GLPNGLTFD 175 (263)
T ss_dssp CS---CEEEECSSCSSEEEEEEETTTTEEEEEECCS-----SSCEEEEEETT-SCCC--EEEECTTC----SCEEEEEEE
T ss_pred ce---EEEEecccccCCcEEEEecccCcEEEeecCC-----CCcEEEEecCC-CCCc--eeeeeecc----cccceEEEe
Confidence 76 555543 334445667899889898887443 24569999987 3222 22232221 334567787
Q ss_pred CCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 310 pDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
+.++ |||. +. +...|.+++.+++..+.+.... ..| + .+.+ .++.|||+... ...|++++.
T Consensus 176 ~~~~~lYw~-d~--~~~~I~~~~~~g~~~~~v~~~~---~~P-~-----~lav-----~~~~lYwtd~~--~~~I~~~~~ 236 (263)
T d1npea_ 176 AFSSQLCWV-DA--GTHRAECLNPAQPGRRKVLEGL---QYP-F-----AVTS-----YGKNLYYTDWK--TNSVIAMDL 236 (263)
T ss_dssp TTTTEEEEE-ET--TTTEEEEEETTEEEEEEEEECC---CSE-E-----EEEE-----ETTEEEEEETT--TTEEEEEET
T ss_pred ecCcEEEEE-eC--CCCEEEEEECCCCCeEEEECCC---CCc-E-----EEEE-----ECCEEEEEECC--CCEEEEEEC
Confidence 7777 7765 33 4457889999887766665331 112 1 2233 56789888753 346999999
Q ss_pred CCCceEEec
Q 004735 389 FGHSLSLLD 397 (732)
Q Consensus 389 ~~~~~~~lt 397 (732)
.+++...+.
T Consensus 237 ~~g~~~~~~ 245 (263)
T d1npea_ 237 AISKEMDTF 245 (263)
T ss_dssp TTTEEEEEE
T ss_pred CCCccceEE
Confidence 887755443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.23 E-value=1.4e-05 Score=81.49 Aligned_cols=135 Identities=8% Similarity=-0.180 Sum_probs=82.2
Q ss_pred ceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC--CCc
Q 004735 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP--WDK 272 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~--~~~ 272 (732)
....++||++.+.+....... ..+||++|.++++ ....+.... ...+.|||||+.|++.+......- ...
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g----~~~~~~~d~~~~~---~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAG----TTENWVSCAGCGV---TLGHSLGAF-LSLAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCS----SEEEEEEETTTTE---EEEEEEECT-TCEEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred ccccCCCCcceeEEeeccCCC----cceEEEEeCCCCc---EEEEEeCCC-CCcceECCCCCEEEEEcccCccccccccC
Confidence 345678999855444332222 3789999999988 555544332 346899999999998763221110 023
Q ss_pred cEEEEEEecCCCceeeeEEecCCCC-CccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
..|.++|.. +++......++.... .-......+.|||||+ +++.... . ..+.++|+.+++.....
T Consensus 96 ~~v~v~D~~-t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~-~--~~v~~~d~~~~~~~~~~ 162 (368)
T d1mdah_ 96 DYVEVFDPV-TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG-S--SAAAGLSVPGASDDQLT 162 (368)
T ss_dssp EEEEEECTT-TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS-S--SCEEEEEETTTEEEEEE
T ss_pred CeEEEEECC-CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC-C--CeEEEEECCCCcEeEEe
Confidence 459999988 776533322322210 0002345789999999 6654322 2 35788899998866554
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.22 E-value=2.7e-05 Score=77.26 Aligned_cols=257 Identities=10% Similarity=-0.060 Sum_probs=126.7
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeC-----
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNY----- 162 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~----- 162 (732)
..+..++++| |+.+|..... .+. +..++..+| +...-.... .............+++++..++....
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~---~~~--v~v~D~~t~-~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~ 106 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNK---SES--LVKIDLVTG-ETLGRIDLS-TPEERVKSLFGAALSPDGKTLAIYESPVRLE 106 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETT---TTE--EEEEETTTC-CEEEEEECC-BTTEEEECTTCEEECTTSSEEEEEEEEEEEC
T ss_pred CCccEEEECCCCCEEEEEECC---CCe--EEEEECCCC-cEEEEEecC-CCcccccceeeEEEcCCCcEEEEeecCCcce
Confidence 3567899999 6666665432 344 444455543 332211111 00000111112233333445544432
Q ss_pred ------CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 163 ------KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 163 ------~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
.+..+.++|..+ ++....... ........|+|||++++.. . ..+.++|..+++ .
T Consensus 107 ~~~~~~~~~~~~~~d~~~--~~~~~~~~~----~~~~~~~~~s~dg~~l~~~-~----------~~~~~~d~~~~~---~ 166 (337)
T d1pbyb_ 107 LTHFEVQPTRVALYDAET--LSRRKAFEA----PRQITMLAWARDGSKLYGL-G----------RDLHVMDPEAGT---L 166 (337)
T ss_dssp SSCEEECCCEEEEEETTT--TEEEEEEEC----CSSCCCEEECTTSSCEEEE-S----------SSEEEEETTTTE---E
T ss_pred eeeccccccceeeccccC--CeEEEeccc----cCCceEEEEcCCCCEEEEE-c----------CCcceeeeecCc---E
Confidence 234678888876 443322222 1122456899999986543 2 245667887766 3
Q ss_pred EEcccCCCceeccccCCCCCeEEEE-------------e-ccCCCC--CCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 237 KVLVSGSDFYAFPRMDPRGERMAWI-------------E-WHHPNM--PWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 237 ~~lt~~~~~~~~p~~SPDG~~la~~-------------~-~~~~~~--~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
..............++||+..+... . ++.... ......++++++. +|+..........
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----- 240 (337)
T d1pbyb_ 167 VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE-TGEMAMREVRIMD----- 240 (337)
T ss_dssp EEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT-TCCEEEEEEEECS-----
T ss_pred EEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC-CCcEEEEEecCCC-----
Confidence 3322222222233455555543211 1 000000 0012347777777 6665333333222
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
.......+++++.+++..+ ..|.++|+.+++........... ..+.|.+ +|++||.. ..++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~~~~~~~~~~~---------~~~~~s~---dG~~l~v~-~~~~~ 302 (337)
T d1pbyb_ 241 VFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVPLPHSY---------YSVNVST---DGSTVWLG-GALGD 302 (337)
T ss_dssp SCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEECSSCC---------CEEEECT---TSCEEEEE-SBSSE
T ss_pred cceEEEEecccceEEEEcc-----ccEEEEECCCCcEEEEEcCCCCE---------EEEEECC---CCCEEEEE-eCCCc
Confidence 3445667889988555443 24788899988755443322111 2334543 77777654 34543
Q ss_pred EEEEEEECCCCce-EEecc
Q 004735 381 SYLGILDDFGHSL-SLLDI 398 (732)
Q Consensus 381 ~~ly~~~~~~~~~-~~lt~ 398 (732)
|.++|.++++. ..|..
T Consensus 303 --i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 303 --LAAYDAETLEKKGQVDL 319 (337)
T ss_dssp --EEEEETTTCCEEEEEEC
T ss_pred --EEEEECCCCcEEEEEEC
Confidence 77789887654 34543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.22 E-value=0.00036 Score=70.55 Aligned_cols=295 Identities=9% Similarity=-0.027 Sum_probs=143.2
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcc---------cccccccCCceeEEECC-E
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAV---------RTTAQEYGGGAFRIFGD-T 156 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~---------~~~~~~~g~~~~~~~~~-~ 156 (732)
...+.+++|+| |+.++ + . . ++...+|....+ .....+....... ....+...+.+.+++++ .
T Consensus 62 ~~~V~~l~fs~dg~~la-s-g-~--d~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ 134 (388)
T d1erja_ 62 TSVVCCVKFSNDGEYLA-T-G-C--NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134 (388)
T ss_dssp SSCCCEEEECTTSSEEE-E-E-C--BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCcEEEEEECCCCCEEE-E-E-e--CCeEEEEEeccc--ceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence 34678999999 66443 3 2 2 356677765432 1111111110000 00011122334555543 4
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
.+++...++.|.+++... ++....... .........|++++..++.... ...+.++|..+.. .
T Consensus 135 ~l~s~~~dg~v~i~~~~~--~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~---------~~~i~~~d~~~~~---~ 197 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIEN--RKIVMILQG---HEQDIYSLDYFPSGDKLVSGSG---------DRTVRIWDLRTGQ---C 197 (388)
T ss_dssp EEEEEETTSCEEEEETTT--TEEEEEECC---CSSCEEEEEECTTSSEEEEEET---------TSEEEEEETTTTE---E
T ss_pred cceecccccccccccccc--ccccccccc---cccccccccccccccccccccc---------ceeeeeeeccccc---c
Confidence 556666788899999876 433322222 1234456779999998665543 2578888988765 3
Q ss_pred EEcccCCCceecc-ccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE-----ecCCCCCccccCcCceeCC
Q 004735 237 KVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC-----VAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 237 ~~lt~~~~~~~~p-~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~wsp 310 (732)
............. .+++||+.|+..+. ...|+++++. ++....... ..+.. ..+..+.|+|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------d~~i~i~~~~-~~~~~~~~~~~~~~~~~h~----~~v~~l~~s~ 264 (388)
T d1erja_ 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSL--------DRAVRVWDSE-TGFLVERLDSENESGTGHK----DSVYSVVFTR 264 (388)
T ss_dssp EEEEECSSCEEEEEECSTTCCEEEEEET--------TSCEEEEETT-TCCEEEEEC------CCCS----SCEEEEEECT
T ss_pred ccccccccccccccccCCCCCeEEEEcC--------CCeEEEeecc-cCccceeeccccccccCCC----CCEEEEEECC
Confidence 3333333322333 34558887776552 2238888987 665421110 11111 3466789999
Q ss_pred CCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCC-ce---eecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 311 KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-LW---VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 311 Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~-~w---~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
||+++++... .+. |..+|..+++.............. .+ ......+.|.+ +++ ++++...+|. |+++
T Consensus 265 ~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~-~l~sg~~dg~--i~vw 335 (388)
T d1erja_ 265 DGQSVVSGSL-DRS--VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ---NDE-YILSGSKDRG--VLFW 335 (388)
T ss_dssp TSSEEEEEET-TSE--EEEEEC---------------CEEEEEECCSSCEEEEEECG---GGC-EEEEEETTSE--EEEE
T ss_pred CCCEEEEEEC-CCc--EEEEeccCCccccccccccccceeeecccccceEEEEEECC---CCC-EEEEEeCCCE--EEEE
Confidence 9995445544 454 444555544322111000000000 00 00112234442 444 4455556665 5555
Q ss_pred ECCCCce-EEeccCCCceEEee-------EeCCEEEEEEeCCCCCcEEEEEEc
Q 004735 387 DDFGHSL-SLLDIPFTDIDNIT-------LGNDCLFVEGASGVEPSSVAKVTL 431 (732)
Q Consensus 387 ~~~~~~~-~~lt~~~~~v~~~~-------~~~~~~~~~~~~~~~~~~ly~~dl 431 (732)
|..+++. ..+......|..+. .+++.+++.++. ++ .|.++++
T Consensus 336 d~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~-Dg--~I~iW~~ 385 (388)
T d1erja_ 336 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG-DC--KARIWKY 385 (388)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET-TS--EEEEEEE
T ss_pred ECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeC-CC--EEEEEee
Confidence 7777764 44555555566551 235666666553 32 4444443
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.21 E-value=0.00089 Score=58.94 Aligned_cols=273 Identities=15% Similarity=0.140 Sum_probs=166.5
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC-----CeEEEEeCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD-----QRLYKHSID 173 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~-----~~l~~~d~~ 173 (732)
++.+.++... .|...++.+.- ++.+.|+.++.+....- -++. +.+.|.++-. ..||..+++
T Consensus 25 ~d~ll~~~~s---eG~vni~~l~g---~~~vkLtkePI~~~~~P-k~~l-------dfi~f~RDV~kGkE~Hai~~~Nlk 90 (313)
T d2hu7a1 25 GDKLLVVGFS---EGSVNAYLYDG---GETVKLNREPINSVLDP-HYGV-------GRVILVRDVSKGAEQHALFKVNTS 90 (313)
T ss_dssp TTEEEEEEEE---TTEEEEEEESS---SSCEECCSSCCSEECEE-CTTB-------SEEEEEEECSTTSCCEEEEEEETT
T ss_pred CCcEEEEEec---cceEEEEEEeC---CEEEEEecccccCcCCC-ccCc-------ceEEEEeehhcCcceeeEEEEccC
Confidence 4545555542 36666776643 37777876663221110 0111 2566765432 279999998
Q ss_pred CCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCC
Q 004735 174 SKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP 253 (732)
Q Consensus 174 ~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SP 253 (732)
.. |+..++... ..+|....+. |++.|+|+..... ...||+++ +|+ .+.|+.-+.|..--..
T Consensus 91 ~~-GEE~~i~sp---k~vRI~S~~y--ddk~vvF~Gased------~~~LYvie--gGk---lrkL~~vPpFsFVtDI-- 151 (313)
T d2hu7a1 91 RP-GEEQRLEAV---KPMRILSGVD--TGEAVVFTGATED------RVALYALD--GGG---LRELARLPGFGFVSDI-- 151 (313)
T ss_dssp ST-TCEEECTTS---CSBEEEEEEE--CSSCEEEEEECSS------CEEEEEEE--TTE---EEEEEEESSCEEEEEE--
T ss_pred CC-CeeeEecCC---ceEEEEEeee--cCceEEEecccCC------ceEEEEEe--CCc---eeeeccCCCcceEEec--
Confidence 43 566677654 2477766544 7888999865432 36788775 677 7777644433211112
Q ss_pred CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEecc
Q 004735 254 RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 254 DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~ 333 (732)
.|++|+=...-..+ ...+++.|+. +|.+ ++++..+ +++..+..+++.++.--... .|......+|++
T Consensus 152 ~~d~I~G~g~~~g~----~~sfF~adl~-SG~l---ri~tpke----GS~~~ay~~~gnKV~sdyEt-~gEsywit~D~~ 218 (313)
T d2hu7a1 152 RGDLIAGLGFFGGG----RVSLFTSNLS-SGGL---RVFDSGE----GSFSSASISPGMKVTAGLET-AREARLVTVDPR 218 (313)
T ss_dssp ETTEEEEEEEEETT----EEEEEEEETT-TEEE---EEECCSS----EEEEEEEECTTSCEEEEEEE-SSCEEEEEECTT
T ss_pred cCCeEEEEeeecCC----cceEEEEecc-cCCE---EEecCCC----CcccceeEccCceeeeccCC-CCceEEEEEecc
Confidence 36677654432222 3448999997 5654 6777666 88999999998876222222 344444477999
Q ss_pred CCeEEEecccccccCC-----CceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEeeE
Q 004735 334 NNEVLAIYSLDAEFSR-----PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITL 408 (732)
Q Consensus 334 ~g~~~~l~~~~~~~~~-----~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~~~ 408 (732)
.++..++.-...++.+ ..|. ... .++.|++.+.++|...|+. ++ +.+..+.+.+.....
T Consensus 219 s~~yerve~P~kd~~sy~p~~I~~~------~Y~----Pdd~L~iiakrdG~s~lF~---nG---k~in~p~G~~~gat~ 282 (313)
T d2hu7a1 219 DGSVEDLELPSKDFSSYRPTAITWL------GYL----PDGRLAVVARREGRSAVFI---DG---ERVEAPQGNHGRVVL 282 (313)
T ss_dssp TCCEEECCCSSCHHHHHCCSEEEEE------EEC----TTSCEEEEEEETTEEEEEE---TT---EEECCCSSEEEEEEE
T ss_pred cCceeeeecCcccceeecceEEEee------eeC----CCCcEEEEEecCCchheee---cc---eEecCCCCcccceEE
Confidence 9988877522222211 1232 122 4456777888999999984 33 355666666766666
Q ss_pred eCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 409 GNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 409 ~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
-++.+++..++-.+|..+..+ ..|+
T Consensus 283 i~~~iyfshsSL~tP~kI~~~--~~~~ 307 (313)
T d2hu7a1 283 WRGKLVTSHTSLSTPPRIVSL--PSGE 307 (313)
T ss_dssp ETTEEEEEEEETTEEEEEEEE--TTCC
T ss_pred ECCEEEEeecccCCCceeEEc--CCCC
Confidence 688999999999999887654 5565
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=98.20 E-value=8.1e-07 Score=87.53 Aligned_cols=114 Identities=11% Similarity=-0.024 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHH-HCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
+...|++|++||............+...+. ...++|+++|++.... ..|..+.... ...-+.+...|++|.++..
T Consensus 67 ~~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~--~~Y~~a~~n~--~~Vg~~ia~~i~~l~~~~g 142 (337)
T d1rp1a2 67 QTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQ--TSYTQAANNV--RVVGAQVAQMLSMLSANYS 142 (337)
T ss_dssp CTTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHS--SCHHHHHHHH--HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccC--cchHHHHHHH--HHHHHHHHHHHHHHHHhcC
Confidence 356799999999854443333334444444 4569999999853211 1222221100 0113556677888777767
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVAD 609 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d 609 (732)
++.++|.|+|||+||++|..+..+..++..+..+.|...
T Consensus 143 ~~~~~vhlIGhSLGAhvAG~aG~~~~~l~rItgLDPA~P 181 (337)
T d1rp1a2 143 YSPSQVQLIGHSLGAHVAGEAGSRTPGLGRITGLDPVEA 181 (337)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTTCCEEEEESCCCT
T ss_pred CChhheEEEeecHHHhhhHHHHHhhccccceeccCCCcc
Confidence 889999999999999999988886667888888877643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2.9e-05 Score=74.89 Aligned_cols=205 Identities=10% Similarity=0.079 Sum_probs=121.2
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCC---CCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCC
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAG---DEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ 165 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~ 165 (732)
.+.++.+++ .+.+||.+... + .|++....+. +..+.+.... +....+.++.|.++.|+|.+...+
T Consensus 31 ~~~~id~d~~~~~lYw~D~~~---~--~I~~~~l~~~~~~~~~~~~~~~~------~~~p~glAvD~~~~~lY~~d~~~~ 99 (266)
T d1ijqa1 31 NVVALDTEVASNRIYWSDLSQ---R--MICSTQLDRAHGVSSYDTVISRD------IQAPDGLAVDWIHSNIYWTDSVLG 99 (266)
T ss_dssp SEEEEEEETTTTEEEEEETTT---T--EEEEEEC--------CEEEECSS------CSCCCEEEEETTTTEEEEEETTTT
T ss_pred ceEEEEEEeCCCEEEEEECCC---C--EEEEEEecCCCCCcceEEEEeCC------CCCcceEEEeeccceEEEEecCCC
Confidence 456788888 99999998633 2 4555443310 0112222211 111122334445889999988888
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-CCC
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSD 244 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~~~ 244 (732)
.|.+.++++ ...+.+.... .......+++|...+++++.... ...|++.++++.. .+.+.. +-.
T Consensus 100 ~I~v~~~~g--~~~~~~~~~~---~~~P~~l~vd~~~g~ly~~~~~~-------~~~I~r~~~dGs~---~~~l~~~~~~ 164 (266)
T d1ijqa1 100 TVSVADTKG--VKRKTLFREN---GSKPRAIVVDPVHGFMYWTDWGT-------PAKIKKGGLNGVD---IYSLVTENIQ 164 (266)
T ss_dssp EEEEEETTS--SSEEEEEECT---TCCEEEEEEETTTTEEEEEECSS-------SCEEEEEETTSCC---EEEEECSSCS
T ss_pred EEEeEecCC--ceEEEEEcCC---CCCcceEEEEcccCeEEEeccCC-------CcceeEeccCCCc---eecccccccc
Confidence 999999986 4444443321 22346677889888776664321 2589999999876 666653 334
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc-eeCCCCc-EEEEEeccC
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP-KWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~-~wspDg~-l~~~~~~~~ 322 (732)
...+.++.+++++|+|.... ...|..++++ +... ..+..... ....| ..+.++. |||+ +.
T Consensus 165 ~p~gl~iD~~~~~lYw~d~~-------~~~I~~~~~d-G~~~--~~~~~~~~-----~~~~p~~lav~~~~ly~t-d~-- 226 (266)
T d1ijqa1 165 WPNGITLDLLSGRLYWVDSK-------LHSISSIDVN-GGNR--KTILEDEK-----RLAHPFSLAVFEDKVFWT-DI-- 226 (266)
T ss_dssp CEEEEEEETTTTEEEEEETT-------TTEEEEEETT-SCSC--EEEEECTT-----TTSSEEEEEEETTEEEEE-ET--
T ss_pred eeeEEEeeccccEEEEecCC-------cCEEEEEECC-CCCE--EEEEeCCC-----cccccEEEEEECCEEEEE-EC--
Confidence 45677899999999998622 3469999987 3332 22232221 11222 2334445 6664 43
Q ss_pred CeeeEEEEeccCCeEE
Q 004735 323 GFWNLHKWIESNNEVL 338 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~ 338 (732)
+...|++++..+|+..
T Consensus 227 ~~~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 227 INEAIFSANRLTGSDV 242 (266)
T ss_dssp TTTEEEEEETTTCCCC
T ss_pred CCCeEEEEECCCCcce
Confidence 3457999998776533
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.15 E-value=5.6e-06 Score=68.84 Aligned_cols=90 Identities=11% Similarity=-0.064 Sum_probs=60.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++... + .-|.||++||.. .. | .+. .+.+|.|+++|.||.+.....
T Consensus 9 ~G~~l~y~~~-----------G-~G~pvlllHG~~-~~----w---~~~-L~~~yrvi~~DlpG~G~S~~p--------- 58 (122)
T d2dsta1 9 YGLNLVFDRV-----------G-KGPPVLLVAEEA-SR----W---PEA-LPEGYAFYLLDLPGYGRTEGP--------- 58 (122)
T ss_dssp TTEEEEEEEE-----------C-CSSEEEEESSSG-GG----C---CSC-CCTTSEEEEECCTTSTTCCCC---------
T ss_pred CCEEEEEEEE-----------c-CCCcEEEEeccc-cc----c---ccc-ccCCeEEEEEeccccCCCCCc---------
Confidence 6888885544 2 236788899952 11 1 112 256999999999976543211
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
....+++.+.+..+++.. +.++..++|||+||.+++.+++
T Consensus 59 -~~s~~~~a~~i~~ll~~L--~i~~~~viG~S~Gg~ia~~laa 98 (122)
T d2dsta1 59 -RMAPEELAHFVAGFAVMM--NLGAPWVLLRGLGLALGPHLEA 98 (122)
T ss_dssp -CCCHHHHHHHHHHHHHHT--TCCSCEEEECGGGGGGHHHHHH
T ss_pred -ccccchhHHHHHHHHHHh--CCCCcEEEEeCccHHHHHHHHh
Confidence 133566666666666653 3568999999999999998887
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.09 E-value=0.00024 Score=70.10 Aligned_cols=240 Identities=10% Similarity=0.063 Sum_probs=124.5
Q ss_pred EEEEEeCC-------CCeEEEEeCCCCCCCceecCCCCCCC-CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 156 TVIFSNYK-------DQRLYKHSIDSKDSSPLPITPDYGEP-LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 156 ~i~f~~~~-------~~~l~~~d~~~~~~~~~~lt~~~~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.++|+... .++|+++|+++ +....+....... ........++|||+.++ +.+. ...|++++
T Consensus 30 ~ly~~~~~~~~~~~~~g~I~r~d~~~--~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~-vad~--------~~~i~~~~ 98 (314)
T d1pjxa_ 30 DFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADM--------RLGLLVVQ 98 (314)
T ss_dssp CEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEE-EEET--------TTEEEEEE
T ss_pred CEEEEECccccccccCCEEEEEECCC--CcEEEEECCccccCCCcceeEEEeCCCCEEE-EEEC--------CCeEEEEe
Confidence 56666433 35799999987 5544433221000 01124578999999754 4432 25789999
Q ss_pred cCCCCccccEEcccC---CC--ceeccccCCCCCeEEEEeccCCCCC--------CCccEEEEEEecCCCceeeeEEecC
Q 004735 228 LNGQNIQEPKVLVSG---SD--FYAFPRMDPRGERMAWIEWHHPNMP--------WDKAELWVGYISENGDVYKRVCVAG 294 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~---~~--~~~~p~~SPDG~~la~~~~~~~~~~--------~~~~~l~v~d~~~~g~~~~~~~~~~ 294 (732)
.+++. ...+... .. ..+...+.|||+ |++........+ .....||.++.+ |+.. .+..+
T Consensus 99 ~~g~~---~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~--~~~~~ 170 (314)
T d1pjxa_ 99 TDGTF---EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMI--QVDTA 170 (314)
T ss_dssp TTSCE---EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEE--EEEEE
T ss_pred CCCcE---EEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeec--Ccee--EeeCC
Confidence 98765 3333221 11 123467899996 767652211101 123468887754 5542 22222
Q ss_pred CCCCccccCcCceeCCCCc----EEEEEeccCCeeeEEEEeccC-CeEE--Eec-ccccccCCCceeecccceeeeeecC
Q 004735 295 FDPTIVESPTEPKWSSKGE----LFFVTDRKNGFWNLHKWIESN-NEVL--AIY-SLDAEFSRPLWVFGINSYEIIQSHG 366 (732)
Q Consensus 295 ~~~~~~~~~~~~~wspDg~----l~~~~~~~~g~~~l~~~d~~~-g~~~--~l~-~~~~~~~~~~w~~~~~~~~~~~~~~ 366 (732)
. .....+.|+||+. .+|+++. ...+|++++++. +... ++. ..... .. - ....+.+-
T Consensus 171 ~-----~~pNGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~--~~-~--~pdGiavD---- 234 (314)
T d1pjxa_ 171 F-----QFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGT--HE-G--GADGMDFD---- 234 (314)
T ss_dssp E-----SSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCC--SS-C--EEEEEEEB----
T ss_pred c-----ceeeeeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEEEcccc--cc-c--cceeeEEe----
Confidence 2 2334678988753 4556654 445688877543 3321 111 11100 00 0 01123332
Q ss_pred CCCEEEEEEEECCEEEEEEEECCCCce-EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 367 EKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 367 ~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
.++.||++.. +...|+++++++++. ..+..+......+ ..++++.+|++.+. ...||++++...
T Consensus 235 ~~GnlyVa~~--~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~--~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 235 EDNNLLVANW--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE--NNAVWKFEWQRN 300 (314)
T ss_dssp TTCCEEEEEE--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT--TTEEEEEECSSC
T ss_pred cCCcEEEEEc--CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC--CCcEEEEECCCC
Confidence 3345665543 335788899988764 4455554555555 33344444555433 247888886553
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.07 E-value=4.6e-05 Score=75.83 Aligned_cols=150 Identities=9% Similarity=-0.051 Sum_probs=81.0
Q ss_pred EEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCC------------------CCCCccEEEEEEecCC
Q 004735 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPN------------------MPWDKAELWVGYISEN 283 (732)
Q Consensus 222 ~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~------------------~~~~~~~l~v~d~~~~ 283 (732)
++.++++.+++ ...............++|||+.++........ .......+.++++. +
T Consensus 164 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (346)
T d1jmxb_ 164 DIYKMDVKTGK---YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK-T 239 (346)
T ss_dssp SEEEECTTTCC---EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT-T
T ss_pred cceEEEccCCC---EEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC-C
Confidence 46677887776 43333323334556788888876432211100 00012346667776 5
Q ss_pred CceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeee
Q 004735 284 GDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEII 362 (732)
Q Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~ 362 (732)
+........... .......+++++. +++.... .+..+|..+++........... ..+.|.
T Consensus 240 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~v~v~d~~~~~~~~~~~~~~~~---------~~va~s 300 (346)
T d1jmxb_ 240 GKTHTQEFADLT-----ELYFTGLRSPKDPNQIYGVLN-----RLAKYDLKQRKLIKAANLDHTY---------YCVAFD 300 (346)
T ss_dssp CCEEEEEEEECS-----SCEEEEEECSSCTTEEEEEES-----EEEEEETTTTEEEEEEECSSCC---------CEEEEC
T ss_pred CceEEEEeeccc-----ceeEEEEEeCCCCEEEEecCC-----eEEEEECCCCcEEEEEcCCCCE---------EEEEEc
Confidence 554333222222 3445667888887 6554332 4788899888765443322111 234454
Q ss_pred eecCCCCEEEEEEEECCEEEEEEEECCCCce-EEeccCC
Q 004735 363 QSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPF 400 (732)
Q Consensus 363 ~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~~ 400 (732)
+ |++++|... .++ .|.++|.++++. ..+..+.
T Consensus 301 ~---DG~~l~v~~-~d~--~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 301 K---KGDKLYLGG-TFN--DLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp S---SSSCEEEES-BSS--EEEEEETTTTEEEEEEECSS
T ss_pred C---CCCEEEEEe-CCC--cEEEEECccCCEEEEEECCC
Confidence 3 777777654 455 477779988764 4555443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.00021 Score=70.49 Aligned_cols=228 Identities=12% Similarity=0.038 Sum_probs=116.8
Q ss_pred CceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 147 ~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+.+.+++++ ..+++...++.|.++|+.+ ++. ..+... .......+|+|+|++++....+.. +.
T Consensus 58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~--~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~~d~~---------i~ 122 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYT--TNKVHAIPLR----SSWVMTCAYAPSGNYVACGGLDNI---------CS 122 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTT--TEEEEEEECS----CSCEEEEEECTTSSEEEEEETTCC---------EE
T ss_pred EEEEEECCCCCEEEEEECCCceeeeeccc--ceeEEEEecc----cccEEeeEeeccceeeeeecccce---------ee
Confidence 444555543 4566666788999999987 443 333322 234567789999998776554321 11
Q ss_pred EEEcCCCCcc--ccEEcc-----------------------------------------cCCCceeccccCCCCCeEEEE
Q 004735 225 AIALNGQNIQ--EPKVLV-----------------------------------------SGSDFYAFPRMDPRGERMAWI 261 (732)
Q Consensus 225 ~~d~~~~~~~--~~~~lt-----------------------------------------~~~~~~~~p~~SPDG~~la~~ 261 (732)
..+....... ....+. ..........+.+++..++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 1121111000 000000 000111223445555544332
Q ss_pred eccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 262 EWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 262 ~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
. ....|.++|+. +++. +..+.+.. ..+..++|+|||+++++... .+. |..++....+.....
T Consensus 203 ~--------~d~~v~i~d~~-~~~~--~~~~~~h~----~~i~~v~~~p~~~~l~s~s~-d~~--i~~~~~~~~~~~~~~ 264 (340)
T d1tbga_ 203 A--------CDASAKLWDVR-EGMC--RQTFTGHE----SDINAICFFPNGNAFATGSD-DAT--CRLFDLRADQELMTY 264 (340)
T ss_dssp E--------TTTEEEEEETT-TTEE--EEEECCCS----SCEEEEEECTTSSEEEEEET-TSC--EEEEETTTTEEEEEE
T ss_pred e--------cCceEEEEECC-CCcE--EEEEeCCC----CCeEEEEECCCCCEEEEEeC-CCe--EEEEeeccccccccc
Confidence 2 23458888887 6654 44455544 56778899999995545444 344 555676665544332
Q ss_pred ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEeccCCCceEEe-eEeCCEEEEEEeC
Q 004735 342 SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 342 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~ 419 (732)
..... .. ....+.|.+ +++ ++++...+|.- +++|..+++. ..+......|..+ ..+++.+++.++.
T Consensus 265 ~~~~~-~~-----~i~~~~~s~---~~~-~l~~g~~dg~i--~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 265 SHDNI-IC-----GITSVSFSK---SGR-LLLAGYDDFNC--NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp CCTTC-CS-----CEEEEEECS---SSC-EEEEEETTSCE--EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ccccc-cC-----ceEEEEECC---CCC-EEEEEECCCEE--EEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence 11111 01 112234442 444 45555556654 4457766654 4455446667777 4455555555543
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.01 E-value=3.8e-06 Score=82.40 Aligned_cols=113 Identities=12% Similarity=-0.011 Sum_probs=74.8
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHH-CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
+..+|++|++||............+...+.+ ..++|+++|+..... ..|..+.... ...-+.+...|++|..+..
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~--~~Y~~a~~n~--~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSR--TEYTQASYNT--RVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHS--SCHHHHHHHH--HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhcc--cchHHHHHhH--HHHHHHHHHHHHHHHHhcC
Confidence 3567999999997544444334444544544 569999999853211 1232222110 0112345556777776667
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
++.+++.++|||+|+++|..+.. ...++..+..+.|..
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 88999999999999999999987 666788888877764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.97 E-value=0.00067 Score=68.41 Aligned_cols=171 Identities=11% Similarity=0.030 Sum_probs=85.9
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
...++||||+.|+.+... ....|.++.+++. ..... ..........++|||+.++....+.. .
T Consensus 43 s~la~s~d~~~ly~~~~~--------~~~~~~i~~~~~~---~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~-----~ 106 (365)
T d1jofa_ 43 SWMTFDHERKNIYGAAMK--------KWSSFAVKSPTEI---VHEASHPIGGHPRANDADTNTRAIFLLAAKQP-----P 106 (365)
T ss_dssp SEEEECTTSSEEEEEEBT--------EEEEEEEEETTEE---EEEEEEECCSSGGGGCTTSCCEEEEEEECSST-----T
T ss_pred CEEEEcCCCCEEEEEeCC--------cEEEEEEeCCCCe---EEEeeecCCCCcEEEEECCCCCEEEEEEecCC-----C
Confidence 346799999987665431 2567777776554 32222 11222345578999998765543321 2
Q ss_pred cEEEEEEecC------------CCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEe
Q 004735 273 AELWVGYISE------------NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 273 ~~l~v~d~~~------------~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l 340 (732)
..++.+.+.. .++............. ..+..+.++|||+.+|+.+...+.-.+|.++. +++...+
T Consensus 107 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~-~g~~~~~ 183 (365)
T d1jofa_ 107 YAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQEN--TGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SGEVELV 183 (365)
T ss_dssp CCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTT--CCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TSCEEEE
T ss_pred CEEEEeEccCCCCcceeEeeeecceecCcccCcccCCC--CcceEEEECCCCCEEEEeeCCCCEEEEEEccC-CCceeec
Confidence 2344444331 2222111111111101 34567899999995556665344434444433 3433322
Q ss_pred cccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC
Q 004735 341 YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 390 (732)
Q Consensus 341 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~ 390 (732)
..... ..+ ..+.+.+.|.+ +++.+|+..+.++.-.+|.++..+
T Consensus 184 ~~~~~--~~~--g~gPr~i~f~p---dg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 184 GSVDA--PDP--GDHPRWVAMHP---TGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEC--SST--TCCEEEEEECT---TSSEEEEEETTTTEEEEEEECTTT
T ss_pred cceee--cCC--CCceEEEEECC---CCceEEEeccCCCEEEEEEecCCC
Confidence 21100 000 01234455654 777777777666666666665443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.95 E-value=0.0011 Score=66.88 Aligned_cols=245 Identities=10% Similarity=0.013 Sum_probs=124.4
Q ss_pred CCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCC--------------CCCCeEeeceeecCCCCEEEEEE
Q 004735 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDY--------------GEPLVSYADGIFDPRFNRYVTVR 209 (732)
Q Consensus 146 g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~--------------~~~~~~~~~~~~spdG~~l~~~~ 209 (732)
.+.+..++++ .++.+. .++.|.++++.+ ++. ..+.... ..........+|||||++|+...
T Consensus 64 ~V~~l~fs~dg~~lasg-~d~~i~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATG-CNKTTQVYRVSD--GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp CCCEEEECTTSSEEEEE-CBSCEEEEETTT--CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEE-eCCeEEEEEecc--cceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 3455566544 344443 467788888876 332 2222110 00112345678999999866544
Q ss_pred eccCCCCCCceeEEEEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceee
Q 004735 210 EDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK 288 (732)
Q Consensus 210 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~ 288 (732)
.+ ..|.+++...++ ..... .....+....|++++..++..+ ....+.++|.. +...
T Consensus 141 ~d---------g~v~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~--------~~~~i~~~d~~-~~~~-- 197 (388)
T d1erja_ 141 ED---------RLIRIWDIENRK---IVMILQGHEQDIYSLDYFPSGDKLVSGS--------GDRTVRIWDLR-TGQC-- 197 (388)
T ss_dssp TT---------SCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEE--------TTSEEEEEETT-TTEE--
T ss_pred cc---------cccccccccccc---cccccccccccccccccccccccccccc--------cceeeeeeecc-cccc--
Confidence 32 467888888776 33333 3344566788999999887665 23458888887 5543
Q ss_pred eEEecCCCCCccccCcCcee-CCCCcEEEEEeccCCeeeEEEEeccCCeEE-Eeccccccc-CCCceeecccceeeeeec
Q 004735 289 RVCVAGFDPTIVESPTEPKW-SSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEF-SRPLWVFGINSYEIIQSH 365 (732)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~w-spDg~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~-~~~~w~~~~~~~~~~~~~ 365 (732)
........ . .....+ .+|++++++... .+ .|..++..++... .+....... .... ....+.|.+
T Consensus 198 ~~~~~~~~----~-~~~~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~s~-- 264 (388)
T d1erja_ 198 SLTLSIED----G-VTTVAVSPGDGKYIAAGSL-DR--AVRVWDSETGFLVERLDSENESGTGHKD---SVYSVVFTR-- 264 (388)
T ss_dssp EEEEECSS----C-EEEEEECSTTCCEEEEEET-TS--CEEEEETTTCCEEEEEC------CCCSS---CEEEEEECT--
T ss_pred cccccccc----c-cccccccCCCCCeEEEEcC-CC--eEEEeecccCccceeeccccccccCCCC---CEEEEEECC--
Confidence 22222222 1 223344 457775555544 34 3666677766543 222111000 0000 112334442
Q ss_pred CCCCEEEEEEEECCEEEEEEEECCCCceE-------------EeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEc
Q 004735 366 GEKNLIACSYRQNGRSYLGILDDFGHSLS-------------LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTL 431 (732)
Q Consensus 366 ~~~~~l~~~s~~~g~~~ly~~~~~~~~~~-------------~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl 431 (732)
+++.| ++...++.-.+| ++.++... ........+..+ ..+++.+++.++.. ..|+++|+
T Consensus 265 -~~~~l-~s~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d---g~i~vwd~ 337 (388)
T d1erja_ 265 -DGQSV-VSGSLDRSVKLW--NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD---RGVLFWDK 337 (388)
T ss_dssp -TSSEE-EEEETTSEEEEE--EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT---SEEEEEET
T ss_pred -CCCEE-EEEECCCcEEEE--eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC---CEEEEEEC
Confidence 55544 455567766666 44333211 111122334555 34455566555543 36888898
Q ss_pred CCCcc
Q 004735 432 DDHKL 436 (732)
Q Consensus 432 ~~~~~ 436 (732)
.+++.
T Consensus 338 ~~~~~ 342 (388)
T d1erja_ 338 KSGNP 342 (388)
T ss_dssp TTCCE
T ss_pred CCCcE
Confidence 88764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.89 E-value=0.00013 Score=73.91 Aligned_cols=172 Identities=10% Similarity=0.040 Sum_probs=91.2
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCC-CCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~-~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
|.+++..++..+.....|++++.+.. +....+... ...++.......|+|||++++.+.+.. ..|.+++.
T Consensus 152 ~sPdG~~l~v~d~g~d~v~~~~~~~~-g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~--------~~V~v~~~ 222 (365)
T d1jofa_ 152 FDPTETYLYSADLTANKLWTHRKLAS-GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG--------NRICEYVI 222 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTT-SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT--------TEEEEEEE
T ss_pred ECCCCCEEEEeeCCCCEEEEEEccCC-CceeeccceeecCCCCceEEEEECCCCceEEEeccCC--------CEEEEEEe
Confidence 33345567777766678888876532 332211110 000122335678999999855554322 57878777
Q ss_pred CCCCccccEE-----cccC------------CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE
Q 004735 229 NGQNIQEPKV-----LVSG------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC 291 (732)
Q Consensus 229 ~~~~~~~~~~-----lt~~------------~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~ 291 (732)
++++...... +... ........+||||++|+.....+... ....|..++++..|.+.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~--~~~~i~~~~~~~~g~~~~~~~ 300 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE--LQGYIAGFKLRDCGSIEKQLF 300 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT--SCCEEEEEEECTTSCEEEEEE
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCc--cceEEEEEEecCCCceeeEeE
Confidence 7653100000 1100 01123457899999986554322111 234477777765666544333
Q ss_pred ecCCC-CCccccCcCceeCC-CCcEEEEEeccCCeeeEEEEeccC
Q 004735 292 VAGFD-PTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 292 ~~~~~-~~~~~~~~~~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
+.... .. .....+.++| ||+.+++++...+.-.+|+++.++
T Consensus 301 ~~~~~~~G--~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 301 LSPTPTSG--GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEECSSCC--TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eeEEEcCC--CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 22110 00 3345678898 789555666546777777776544
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.86 E-value=7.3e-05 Score=73.99 Aligned_cols=138 Identities=12% Similarity=-0.010 Sum_probs=87.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
.++++...++.|.++|+.+ ++.. .+... .......+|+|+|+.|+....+ ..|.++++....
T Consensus 197 ~~~~~~~~d~~v~i~d~~~--~~~~~~~~~h----~~~i~~v~~~p~~~~l~s~s~d---------~~i~~~~~~~~~-- 259 (340)
T d1tbga_ 197 RLFVSGACDASAKLWDVRE--GMCRQTFTGH----ESDINAICFFPNGNAFATGSDD---------ATCRLFDLRADQ-- 259 (340)
T ss_dssp SEEEEEETTTEEEEEETTT--TEEEEEECCC----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTTE--
T ss_pred ceeEEeecCceEEEEECCC--CcEEEEEeCC----CCCeEEEEECCCCCEEEEEeCC---------CeEEEEeecccc--
Confidence 3444555667889999876 4433 33332 2345667899999986655432 467888887765
Q ss_pred ccEEcc---cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 235 EPKVLV---SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 235 ~~~~lt---~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
..... ..........|||||+.|+..+ . ...|+++|+. +++. +..+.+.. ..+..+.|+||
T Consensus 260 -~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~-------dg~i~iwd~~-~~~~--~~~~~~H~----~~V~~l~~s~d 323 (340)
T d1tbga_ 260 -ELMTYSHDNIICGITSVSFSKSGRLLLAGY-D-------DFNCNVWDAL-KADR--AGVLAGHD----NRVSCLGVTDD 323 (340)
T ss_dssp -EEEEECCTTCCSCEEEEEECSSSCEEEEEE-T-------TSCEEEEETT-TCCE--EEEECCCS----SCEEEEEECTT
T ss_pred -cccccccccccCceEEEEECCCCCEEEEEE-C-------CCEEEEEECC-CCcE--EEEEcCCC----CCEEEEEEeCC
Confidence 32222 2223355678999999887654 2 2348999988 6765 55566654 56778899999
Q ss_pred CcEEEEEeccCCeeeE
Q 004735 312 GELFFVTDRKNGFWNL 327 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l 327 (732)
|+++++... .|.-.|
T Consensus 324 ~~~l~s~s~-Dg~v~i 338 (340)
T d1tbga_ 324 GMAVATGSW-DSFLKI 338 (340)
T ss_dssp SSCEEEEET-TSCEEE
T ss_pred CCEEEEEcc-CCEEEE
Confidence 994444444 454333
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.85 E-value=0.00064 Score=66.55 Aligned_cols=202 Identities=12% Similarity=0.019 Sum_probs=107.0
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
.+++++|||+ |+++ +.. ...|++++.++. .+.+..........+++|||+ |+...+.. .
T Consensus 31 e~iAv~pdG~-l~vt-~~~-------~~~I~~i~p~g~----~~~~~~~~~~~~gla~~~dG~-l~v~~~~~-------~ 89 (302)
T d2p4oa1 31 ENLASAPDGT-IFVT-NHE-------VGEIVSITPDGN----QQIHATVEGKVSGLAFTSNGD-LVATGWNA-------D 89 (302)
T ss_dssp EEEEECTTSC-EEEE-ETT-------TTEEEEECTTCC----EEEEEECSSEEEEEEECTTSC-EEEEEECT-------T
T ss_pred CCEEECCCCC-EEEE-eCC-------CCEEEEEeCCCC----EEEEEcCCCCcceEEEcCCCC-eEEEecCC-------c
Confidence 4678999998 3444 322 268999998754 455555555667789999998 54554333 2
Q ss_pred EEEEEEecC-CCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccc--cccCCC
Q 004735 274 ELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSRP 350 (732)
Q Consensus 274 ~l~v~d~~~-~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~--~~~~~~ 350 (732)
.+++++... .++...+...... .....+.+.+||++|+ ++. +...++++++.++......... ......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~n~i~~~~~g~~~v-~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (302)
T d2p4oa1 90 SIPVVSLVKSDGTVETLLTLPDA-----IFLNGITPLSDTQYLT-ADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSE 161 (302)
T ss_dssp SCEEEEEECTTSCEEEEEECTTC-----SCEEEEEESSSSEEEE-EET--TTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred eEEEEEecccccceeeccccCCc-----cccceeEEccCCCEEe-ecc--ccccceeeeccCCcceeEecCCccceeecc
Confidence 256666652 2444322222222 3456778899997654 443 4457899999888655443211 000001
Q ss_pred ceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE---EeccCCCceEEe-eEeCCEEEEEEeCCCCCcEE
Q 004735 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS---LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSV 426 (732)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~---~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~l 426 (732)
........+.+ +++.+|+... ....||+++.++.... .+.........+ ...++.++ ++.... ..|
T Consensus 162 ~~~~~~ngi~~-----~~~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~-va~~~~--~~V 231 (302)
T d2p4oa1 162 SVFPAANGLKR-----FGNFLYVSNT--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY-GATHIY--NSV 231 (302)
T ss_dssp CCSCSEEEEEE-----ETTEEEEEET--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEE-EECBTT--CCE
T ss_pred Ccccccccccc-----cCCceeeecC--CCCeEEeccccccccccccccccCCCCCcceEECCCCCEE-EEEcCC--CcE
Confidence 11111112223 5566776654 3356788876654321 111111222334 33445544 333222 358
Q ss_pred EEEEcCCC
Q 004735 427 AKVTLDDH 434 (732)
Q Consensus 427 y~~dl~~~ 434 (732)
++++.+++
T Consensus 232 ~~i~p~G~ 239 (302)
T d2p4oa1 232 VRIAPDRS 239 (302)
T ss_dssp EEECTTCC
T ss_pred EEECCCCC
Confidence 88876654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.67 E-value=0.029 Score=54.38 Aligned_cols=185 Identities=11% Similarity=0.068 Sum_probs=101.3
Q ss_pred ecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc-ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEE
Q 004735 198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 276 (732)
Q Consensus 198 ~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~ 276 (732)
+.++|+.++....+ ..|..+|+.+++ .... ...........++|+++.++.... ...|.
T Consensus 167 ~~~~~~~~~~~~~d---------~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------d~~i~ 226 (355)
T d1nexb2 167 VSGHGNIVVSGSYD---------NTLIVWDVAQMK---CLYILSGHTDRIYSTIYDHERKRCISASM--------DTTIR 226 (355)
T ss_dssp EEEETTEEEEEETT---------SCEEEEETTTTE---EEEEECCCSSCEEEEEEETTTTEEEEEET--------TSCEE
T ss_pred cccccceeeeeccc---------ceeeeeeccccc---ceeeeeccccccccccccccceeeecccc--------cceEE
Confidence 45667765444332 467778887765 3332 233344556789999998877652 23488
Q ss_pred EEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecc
Q 004735 277 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGI 356 (732)
Q Consensus 277 v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~ 356 (732)
++|+. ++.. ...+.+.. ..+..+.|+ +++++.... .| .|..+|+.++..+..... .......+.
T Consensus 227 i~d~~-~~~~--~~~~~~h~----~~v~~~~~~--~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~-~~~~~~~~~--- 290 (355)
T d1nexb2 227 IWDLE-NGEL--MYTLQGHT----ALVGLLRLS--DKFLVSAAA-DG--SIRGWDANDYSRKFSYHH-TNLSAITTF--- 290 (355)
T ss_dssp EEETT-TCCE--EEEECCCS----SCCCEEEEC--SSEEEEECT-TS--EEEEEETTTCCEEEEEEC-TTCCCCCEE---
T ss_pred eeecc-cccc--cccccccc----ccccccccc--cceeeeeec-cc--ccccccccccceeccccc-CCceEEEEE---
Confidence 99988 6755 44455543 455666675 454445444 44 466667776654322221 111111221
Q ss_pred cceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE--EeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEc
Q 004735 357 NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS--LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTL 431 (732)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~--~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl 431 (732)
. .++.++.+. .++. |.++|+.+++.. .+......|..+...++.+++ +.+.++..-|+.+|.
T Consensus 291 -----~----~~~~~l~~g-~d~~--i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~-~~s~dg~~~l~~~df 354 (355)
T d1nexb2 291 -----Y----VSDNILVSG-SENQ--FNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA-AVEKDGQSFLEILDF 354 (355)
T ss_dssp -----E----ECSSEEEEE-ETTE--EEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEE-EEESSSCEEEEEEEC
T ss_pred -----c----CCCCEEEEE-eCCE--EEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEE-EEECCCcEEEEEEeC
Confidence 1 334455454 3664 566688887653 233334557777445566544 444454445666663
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.64 E-value=0.00014 Score=69.38 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCCCccC-CcccHHHHHHHHC--CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 494 KPPLLVKSHGGPTSEAR-GILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~~--G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
+.| ||++||...+... ..+......+.+. |+.|+++++.... ......... ..+++..+.+...+++..
T Consensus 5 P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~--~~~~~~~~~-----~~~~~~~e~v~~~I~~~~ 76 (279)
T d1ei9a_ 5 PLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTL--REDVENSFF-----LNVNSQVTTVCQILAKDP 76 (279)
T ss_dssp SCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSH--HHHHHHHHH-----SCHHHHHHHHHHHHHSCG
T ss_pred CCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCc--ccccccchh-----hhHHHHHHHHHHHHHhcc
Confidence 345 6689997444322 3466667777665 9999999974211 111111111 123444444433333322
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCC-cceEEEeecC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRD-TFKAGASLYG 606 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~-~~~a~v~~~~ 606 (732)
...++|-++|||+||.++-.++. .+. .+...|.+++
T Consensus 77 ~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgs 114 (279)
T d1ei9a_ 77 KLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp GGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred ccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECC
Confidence 22468999999999999988887 443 4777776654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.61 E-value=0.00045 Score=70.45 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=88.7
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCC--CCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~--~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
.+..++++.++++...++.|.++|+.+ +++. .+... ...+.......+|||||+.|+....+.. ...|.
T Consensus 188 ~~v~~s~dg~lasgs~Dg~i~iwd~~~--~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t------~~~i~ 259 (393)
T d1sq9a_ 188 TSVDISERGLIATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS------FGCIT 259 (393)
T ss_dssp CEEEECTTSEEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT------EEEEE
T ss_pred EEEEECCCCEEEEEeCCCcEEEEeecc--cccccccccccccccccceEEEcccccccceeeeecCCCC------cceee
Confidence 445666676777777888999999986 4332 11111 0001234566789999998776655432 24577
Q ss_pred EEEcCCCCccccEEcc-------------cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE
Q 004735 225 AIALNGQNIQEPKVLV-------------SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC 291 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt-------------~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~ 291 (732)
++|+++++. ...|. .....+...+|||||+.|+-.+ ....|.++|++ +|+. +..
T Consensus 260 lwd~~~g~~--~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s--------~D~~v~vWd~~-~g~~--~~~ 326 (393)
T d1sq9a_ 260 LYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG--------WDGKLRFWDVK-TKER--ITT 326 (393)
T ss_dssp EEETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE--------TTSEEEEEETT-TTEE--EEE
T ss_pred eccccccee--eeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC--------CCCEEEEEECC-CCCE--EEE
Confidence 789887751 22221 1123456789999999887555 23459999998 7865 555
Q ss_pred ecCCCCCcc-ccCcCceeCCCCc
Q 004735 292 VAGFDPTIV-ESPTEPKWSSKGE 313 (732)
Q Consensus 292 ~~~~~~~~~-~~~~~~~wspDg~ 313 (732)
+.+.. +.+ .....+.++++|.
T Consensus 327 l~gH~-~~v~~~~~~~~~~~~~~ 348 (393)
T d1sq9a_ 327 LNMHC-DDIEIEEDILAVDEHGD 348 (393)
T ss_dssp EECCG-GGCSSGGGCCCBCTTSC
T ss_pred ECCcC-CcccCCccEEEECCCCC
Confidence 66543 100 1223578999987
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.47 E-value=0.0056 Score=58.69 Aligned_cols=245 Identities=12% Similarity=0.041 Sum_probs=119.3
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEE-eCCCCeEE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS-NYKDQRLY 168 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~-~~~~~~l~ 168 (732)
.|.+++++|.+.||..+.. .. .|..++.+ |+....++.............+..+..+.+..++. ......|.
T Consensus 24 ~P~gvavd~dg~i~VaD~~---n~--rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~ 96 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTN---NH--RIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 96 (279)
T ss_dssp CEEEEEECTTCCEEEEEGG---GT--EEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccEEEEcCCCCEEEEECC---CC--EEEEEeCC--CCEEEEecccCCCcccccccccccccccccccceeccCCccccc
Confidence 5678899885568887642 23 45555554 23222222111111111111111111122333333 33445788
Q ss_pred EEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC--CCce
Q 004735 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG--SDFY 246 (732)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~--~~~~ 246 (732)
+++..+ ...+.+.... .......+..++|+.++. +.. ...+++++.++.. ...+... ....
T Consensus 97 ~~~~~g--~~~~~~~~~~---~~~p~~~avd~~G~i~v~--~~~-------~~~~~~~~~~g~~---~~~~g~~~~~~~~ 159 (279)
T d1q7fa_ 97 IYNQYG--QFVRKFGATI---LQHPRGVTVDNKGRIIVV--ECK-------VMRVIIFDQNGNV---LHKFGCSKHLEFP 159 (279)
T ss_dssp EECTTS--CEEEEECTTT---CSCEEEEEECTTSCEEEE--ETT-------TTEEEEECTTSCE---EEEEECTTTCSSE
T ss_pred cccccc--cceeecCCCc---ccccceeccccCCcEEEE--eec-------cceeeEeccCCce---eeccccccccccc
Confidence 888764 3333332220 122345678889984332 221 2578888877654 3433222 2233
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
....++++|+ |++... ....|++++.+ |+. +..+...... ..+..++.+++|+||+ ++. .+...
T Consensus 160 ~~i~~d~~g~-i~v~d~-------~~~~V~~~d~~--G~~--~~~~g~~g~~--~~P~giavD~~G~i~V-ad~-~~~~~ 223 (279)
T d1q7fa_ 160 NGVVVNDKQE-IFISDN-------RAHCVKVFNYE--GQY--LRQIGGEGIT--NYPIGVGINSNGEILI-ADN-HNNFN 223 (279)
T ss_dssp EEEEECSSSE-EEEEEG-------GGTEEEEEETT--CCE--EEEESCTTTS--CSEEEEEECTTCCEEE-EEC-SSSCE
T ss_pred ceeeecccee-EEeeec-------cccceeeeecC--Cce--eeeecccccc--cCCcccccccCCeEEE-EEC-CCCcE
Confidence 4456788885 655542 24568888865 544 3333322101 3345667899998554 454 44556
Q ss_pred EEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 327 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 327 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
|.++++++.-.+.+.... .... ...+++. +++.||++ +.+..-++|++
T Consensus 224 v~~f~~~G~~~~~~~~~~-~~~~------p~~vav~----~dG~l~V~-~~n~~v~~fr~ 271 (279)
T d1q7fa_ 224 LTIFTQDGQLISALESKV-KHAQ------CFDVALM----DDGSVVLA-SKDYRLYIYRY 271 (279)
T ss_dssp EEEECTTSCEEEEEEESS-CCSC------EEEEEEE----TTTEEEEE-ETTTEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCC-CCCC------EeEEEEe----CCCcEEEE-eCCCeEEEEEe
Confidence 888887544344443211 1111 1223443 44566654 45555666655
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.004 Score=64.49 Aligned_cols=136 Identities=12% Similarity=0.099 Sum_probs=82.3
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc---------H-------HHHHHHHCCCEE
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN---------L-------SIQYWTSRGWAF 527 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~---------~-------~~~~l~~~G~~v 527 (732)
-.+... ++..+..|++...+ .....|++|++-|||++..-.... . ....|.+. ..+
T Consensus 24 Gyl~~~-~~~~lffw~~~s~~------~~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~-anl 95 (452)
T d1ivya_ 24 GYLKSS-GSKHLHYWFVESQK------DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLI-ANV 95 (452)
T ss_dssp EEEECS-TTEEEEEEEECCSS------CGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGS-SEE
T ss_pred eeeecC-CCceEEEEEEEcCC------CCCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcc-cCE
Confidence 345555 68889988886654 134579999999999864332100 0 00012222 478
Q ss_pred EEEcCCCCCCCChhhHHhhccCCCcc---cHHHHHHHH-HHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-----CCCcc
Q 004735 528 VDVNYGGSTGYGREFRERLLGRWGIV---DVNDCCSCA-TFLVGSGKADEKRLCITGGSAGGYTTLAALA-----FRDTF 598 (732)
Q Consensus 528 ~~~d~rG~~g~g~~~~~~~~~~~~~~---~~~D~~~~i-~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-----~p~~~ 598 (732)
+-+|.+-.+|+...-. ...... ...|+.+++ +++...+.....++.|.|-|+||..+-.++. ..-.+
T Consensus 96 lfIDqPvGtGfS~~~~----~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l 171 (452)
T d1ivya_ 96 LYLESPAGVGFSYSDD----KFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNL 171 (452)
T ss_dssp EEECCSTTSTTCEESS----CCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCE
T ss_pred EEEecCCCcccccCCC----CCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccc
Confidence 8889664455543311 111111 144444444 4555545555679999999999998877664 22358
Q ss_pred eEEEeecCcCCHH
Q 004735 599 KAGASLYGVADLS 611 (732)
Q Consensus 599 ~a~v~~~~~~d~~ 611 (732)
+++++.+|+.|..
T Consensus 172 ~Gi~igng~~d~~ 184 (452)
T d1ivya_ 172 QGLAVGNGLSSYE 184 (452)
T ss_dssp EEEEEESCCSBHH
T ss_pred cceEcCCCccCch
Confidence 9999999998754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.42 E-value=0.0078 Score=61.10 Aligned_cols=107 Identities=13% Similarity=0.032 Sum_probs=62.3
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCC---------CCC-Cce
Q 004735 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ---------DAL-NST 220 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~---------~~~-~~~ 220 (732)
.++|..++..+..+++|.++|+++ .+..++..-+. .......+++|||++++.+...... ... ...
T Consensus 80 tpDGr~lfV~d~~~~rVavIDl~t--~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~ 155 (441)
T d1qnia2 80 RYDGKYLFINDKANTRVARIRLDI--MKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSY 155 (441)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTT--TEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEE
T ss_pred cCCCCEEEEEcCCCCEEEEEECCC--CcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCccccccccccc
Confidence 345667777777788999999998 66555432110 1222456799999975444322110 000 112
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEecc
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWH 264 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~ 264 (732)
..+-.+|..+.+. ..++.-+ .......+||||++++..+.+
T Consensus 156 ~~~~~iD~~t~~v--~~qI~v~-~~p~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 156 TMFTAIDAETMDV--AWQVIVD-GNLDNTDADYTGKYATSTCYN 196 (441)
T ss_dssp EEEEEEETTTCSE--EEEEEES-SCCCCEEECSSSSEEEEEESC
T ss_pred ceEEeecCcccee--eEEEecC-CCccceEECCCCCEEEEEecC
Confidence 3445678877652 2333322 234567899999998776644
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.35 E-value=0.015 Score=54.87 Aligned_cols=202 Identities=16% Similarity=0.153 Sum_probs=101.4
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCeEE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRLY 168 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l~ 168 (732)
.|.++++++.+.+|+++... .++ +.+...++ ......... . .... ..++++.+ .|+++.. .+.+.
T Consensus 15 ~P~~vavd~dG~i~v~~~~~--~~~--i~~~~~~~--~~~~~~~~~-~----~~~p--~gvav~~~g~i~v~d~-~~~~i 80 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGM--YGR--VVKLATGS--TGTTVLPFN-G----LYQP--QGLAVDGAGTVYVTDF-NNRVV 80 (260)
T ss_dssp CEEEEEECTTCCEEEEECSS--SCE--EEEEC------CEEECCCC-S----CCSC--CCEEECTTCCEEEEET-TTEEE
T ss_pred CCCEEEEcCCCCEEEEEcCC--CCE--EEEEcCCC--ceEEEeccC-C----ccCc--eEEEEcCCCCEEEeee-eecee
Confidence 56788999855688877533 243 44554441 222222211 0 0111 12334333 5555543 34444
Q ss_pred EEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cCCCcee
Q 004735 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYA 247 (732)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~ 247 (732)
.+...+ .....+.... .....+.+++++|+. ++ .+.. ...+++++..+.. ..... .+.....
T Consensus 81 ~~~~~~--~~~~~~~~~~---~~~p~~iavd~~g~i-~v-~d~~-------~~~~~~~~~~~~~---~~~~~~~~~~~p~ 143 (260)
T d1rwia_ 81 TLAAGS--NNQTVLPFDG---LNYPEGLAVDTQGAV-YV-ADRG-------NNRVVKLAAGSKT---QTVLPFTGLNDPD 143 (260)
T ss_dssp EECTTC--SCCEECCCCS---CCSEEEEEECTTCCE-EE-EEGG-------GTEEEEECTTCSS---CEECCCCSCCSCC
T ss_pred eeeeec--cceeeeeeee---eeeccccccccccee-Ee-eccc-------cccccccccccce---eeeeeecccCCcc
Confidence 444332 2233322220 122356778999984 33 3322 2578888877654 33332 2222334
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeE
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l 327 (732)
...++|+|+ |++..+ ...+|++++.+ +. . ...+.... - ..+..++++++|+||+ ++. +..+|
T Consensus 144 ~i~~~~~g~-~~v~~~-------~~~~i~~~d~~-~~-~--~~~~~~~~-~--~~p~gi~~d~~g~l~v-sd~--~~~~i 205 (260)
T d1rwia_ 144 GVAVDNSGN-VYVTDT-------DNNRVVKLEAE-SN-N--QVVLPFTD-I--TAPWGIAVDEAGTVYV-TEH--NTNQV 205 (260)
T ss_dssp EEEECTTCC-EEEEEG-------GGTEEEEECTT-TC-C--EEECCCSS-C--CSEEEEEECTTCCEEE-EET--TTTEE
T ss_pred eeeecCCCC-Eeeecc-------ccccccccccc-cc-e--eeeeeccc-c--CCCccceeeeeeeeee-eec--CCCEE
Confidence 567889997 655542 24568888876 22 2 12222111 0 3455678889988754 444 34568
Q ss_pred EEEeccCCeEEEe
Q 004735 328 HKWIESNNEVLAI 340 (732)
Q Consensus 328 ~~~d~~~g~~~~l 340 (732)
++++++++..+.+
T Consensus 206 ~~~~~~~~~~~~~ 218 (260)
T d1rwia_ 206 VKLLAGSTTSTVL 218 (260)
T ss_dssp EEECTTCSCCEEC
T ss_pred EEEeCCCCeEEEE
Confidence 8888776654443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=0.0014 Score=62.87 Aligned_cols=195 Identities=8% Similarity=-0.083 Sum_probs=97.2
Q ss_pred ceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccE
Q 004735 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~ 274 (732)
...++++|..++.... ..+++++..+++ ......... ..-.++|+++.++....+. ..
T Consensus 85 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~v~~~~~-------~~ 142 (287)
T d1pgua2 85 VASANNDGFTAVLTND----------DDLLILQSFTGD---IIKSVRLNS--PGSAVSLSQNYVAVGLEEG-------NT 142 (287)
T ss_dssp EEEECSSSEEEEEETT----------SEEEEEETTTCC---EEEEEECSS--CEEEEEECSSEEEEEETTT-------SC
T ss_pred eeeeccCCceEEEeec----------ccceeeecccee---eeeeccccc--eeeeeeccCcceeeecccc-------ce
Confidence 3457888876443322 467788887766 332222111 1235788999887665322 23
Q ss_pred EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec--ccccccCCCce
Q 004735 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLW 352 (732)
Q Consensus 275 l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w 352 (732)
+.++++. +.+. ...+.... . ..+..+.|+|||+++++... .|. |..+|..+++..... .....+....|
T Consensus 143 v~~~~~~-~~~~--~~~~~~~~-~--~~v~~~~~s~~~~~l~~g~~-dg~--i~i~d~~~~~~~~~~~~~h~~~v~~~~~ 213 (287)
T d1pgua2 143 IQVFKLS-DLEV--SFDLKTPL-R--AKPSYISISPSETYIAAGDV-MGK--ILLYDLQSREVKTSRWAFRTSKINAISW 213 (287)
T ss_dssp EEEEETT-EEEE--EEECSSCC-S--SCEEEEEECTTSSEEEEEET-TSC--EEEEETTTTEEEECCSCCCSSCEEEEEE
T ss_pred eeeeecc-ccce--eeeeeecc-C--CceeEEEeccCccccccccc-ccc--ccceeecccccccccccccccccceeee
Confidence 6777765 3322 12222211 1 44667899999995555544 444 566677776643221 11222223345
Q ss_pred eecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC-C-ceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEE
Q 004735 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-H-SLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVA 427 (732)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~-~-~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly 427 (732)
++......... .+..++++...++.-.|| ++.. + ..+.+......|..+ ..+++. ++.++ .++.-.+|
T Consensus 214 ~p~~~~~~~~~---~~~~~l~sgs~D~~i~iw--~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g-~D~~v~iW 284 (287)
T d1pgua2 214 KPAEKGANEEE---IEEDLVATGSLDTNIFIY--SVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG-ADACIKRW 284 (287)
T ss_dssp CCCC------C---CSCCEEEEEETTSCEEEE--ESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE-TTSCEEEE
T ss_pred ccccccccccc---CCCCeeEeecCCCeEEEE--ECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEE-CCCeEEEE
Confidence 44322211111 233455566667765555 5543 3 334444445667777 455665 33433 34333344
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.28 E-value=0.018 Score=56.01 Aligned_cols=237 Identities=13% Similarity=0.109 Sum_probs=124.1
Q ss_pred CCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 146 g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.+.+..++++..+++...++.|.+++... ........... .........++++++.++....+ ..|.+
T Consensus 55 ~V~~l~~s~~~~l~s~s~D~~i~iw~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d---------~~i~i 122 (355)
T d1nexb2 55 GVWALKYAHGGILVSGSTDRTVRVWDIKK--GCCTHVFEGHN-STVRCLDIVEYKNIKYIVTGSRD---------NTLHV 122 (355)
T ss_dssp CEEEEEEETTTEEEEEETTCCEEEEETTT--TEEEEEECCCS-SCEEEEEEEEETTEEEEEEEETT---------SEEEE
T ss_pred CEEEEEEcCCCEEEEEecccccccccccc--ccccccccccc-ccccccccccccccceeeeecCC---------CcEEE
Confidence 34556666666677777888899999876 43332222211 12333445678898876665542 46777
Q ss_pred EEcCCCCccccEEcccC-----------C---Cc--------eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC
Q 004735 226 IALNGQNIQEPKVLVSG-----------S---DF--------YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN 283 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~-----------~---~~--------~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~ 283 (732)
+++.++. ....... . .. ..-..+.++|+.++.... ...+.++|+. +
T Consensus 123 w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--------d~~i~~~d~~-~ 190 (355)
T d1nexb2 123 WKLPKES---SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY--------DNTLIVWDVA-Q 190 (355)
T ss_dssp EECCC--------------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET--------TSCEEEEETT-T
T ss_pred EEccCCc---eeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecc--------cceeeeeecc-c
Confidence 7776543 1111000 0 00 001234567776665542 2337888887 5
Q ss_pred CceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeee
Q 004735 284 GDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ 363 (732)
Q Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~ 363 (732)
++. .....+.. .......|+++++.++.... .+ .|..++..++......... ..+. ..+.+
T Consensus 191 ~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-d~--~i~i~d~~~~~~~~~~~~h---~~~v-----~~~~~-- 251 (355)
T d1nexb2 191 MKC--LYILSGHT----DRIYSTIYDHERKRCISASM-DT--TIRIWDLENGELMYTLQGH---TALV-----GLLRL-- 251 (355)
T ss_dssp TEE--EEEECCCS----SCEEEEEEETTTTEEEEEET-TS--CEEEEETTTCCEEEEECCC---SSCC-----CEEEE--
T ss_pred ccc--eeeeeccc----cccccccccccceeeecccc-cc--eEEeeeccccccccccccc---cccc-----ccccc--
Confidence 644 44444443 44567789999984444443 34 3666777777654433221 1111 12223
Q ss_pred ecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 364 SHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 364 ~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+++.| ++...+|.-.+ +|+.++..+ +......+..+ ..+++.++..++ . ..|.++|+++++.
T Consensus 252 ---~~~~l-~~~~~dg~i~i--wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~-d---~~i~vwd~~tg~~ 315 (355)
T d1nexb2 252 ---SDKFL-VSAAADGSIRG--WDANDYSRK-FSYHHTNLSAITTFYVSDNILVSGS-E---NQFNIYNLRSGKL 315 (355)
T ss_dssp ---CSSEE-EEECTTSEEEE--EETTTCCEE-EEEECTTCCCCCEEEECSSEEEEEE-T---TEEEEEETTTCCB
T ss_pred ---cccee-eeeeccccccc--cccccccee-cccccCCceEEEEEcCCCCEEEEEe-C---CEEEEEECCCCCE
Confidence 44444 44555665444 477665533 33222222222 344555555443 2 3689999988874
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.22 E-value=0.0017 Score=65.88 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=74.9
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE-------cccCCCceeccccCCCCCeEEEEeccCC
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-------LVSGSDFYAFPRMDPRGERMAWIEWHHP 266 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-------lt~~~~~~~~p~~SPDG~~la~~~~~~~ 266 (732)
....|+||| . +++...+ ..|.++|+.+++ ... +......+...+|||||+.|+-.+.+.
T Consensus 188 ~~v~~s~dg-~-lasgs~D--------g~i~iwd~~~~~---~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~- 253 (393)
T d1sq9a_ 188 TSVDISERG-L-IATGFNN--------GTVQISELSTLR---PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN- 253 (393)
T ss_dssp CEEEECTTS-E-EEEECTT--------SEEEEEETTTTE---EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-
T ss_pred EEEEECCCC-E-EEEEeCC--------CcEEEEeecccc---cccccccccccccccceEEEcccccccceeeeecCCC-
Confidence 446799998 3 3444322 578888998775 322 122234566788999999988766443
Q ss_pred CCCCCccEEEEEEecCCCceeeeEEec-------------CCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEecc
Q 004735 267 NMPWDKAELWVGYISENGDVYKRVCVA-------------GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 267 ~~~~~~~~l~v~d~~~~g~~~~~~~~~-------------~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~ 333 (732)
....+.++|++ +|+. +..+. +.. ..+..++|+|||+++++... .+ .|.++|.+
T Consensus 254 ----t~~~i~lwd~~-~g~~--~~~l~~~~~~~~~~~~~~gH~----~~V~~l~fspd~~~l~S~s~-D~--~v~vWd~~ 319 (393)
T d1sq9a_ 254 ----SFGCITLYETE-FGER--IGSLSVPTHSSQASLGEFAHS----SWVMSLSFNDSGETLCSAGW-DG--KLRFWDVK 319 (393)
T ss_dssp ----TEEEEEEEETT-TCCE--EEEECBC--------CCBSBS----SCEEEEEECSSSSEEEEEET-TS--EEEEEETT
T ss_pred ----Ccceeeecccc-ccee--eeeeccccccccceeeeeccc----CceeeeccCCCCCeeEEECC-CC--EEEEEECC
Confidence 12347788888 6654 22221 122 34667899999996556554 44 46666888
Q ss_pred CCeEEEec
Q 004735 334 NNEVLAIY 341 (732)
Q Consensus 334 ~g~~~~l~ 341 (732)
+|+.....
T Consensus 320 ~g~~~~~l 327 (393)
T d1sq9a_ 320 TKERITTL 327 (393)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 88765444
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.19 E-value=0.00033 Score=71.59 Aligned_cols=104 Identities=10% Similarity=-0.087 Sum_probs=60.1
Q ss_pred ecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc--CCCceeccccCCCCCeEEEEeccCCCC--CCC--
Q 004735 198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNM--PWD-- 271 (732)
Q Consensus 198 ~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~--~~~-- 271 (732)
.+|||++ +|+.+.. ..+|-++|+++.+ ..++.. ......+.++||||++++.....+... +++
T Consensus 79 gtpDGr~-lfV~d~~-------~~rVavIDl~t~k---~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~ 147 (441)
T d1qnia2 79 GRYDGKY-LFINDKA-------NTRVARIRLDIMK---TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT 147 (441)
T ss_dssp TEEEEEE-EEEEETT-------TTEEEEEETTTTE---EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred ccCCCCE-EEEEcCC-------CCEEEEEECCCCc---EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence 5799998 4665533 2689999999987 554432 112234578999999876554332211 111
Q ss_pred -------ccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEec
Q 004735 272 -------KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 272 -------~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~ 320 (732)
...+-.+|.. +.+... ++..+ ..+..+.++|||+.+|.+..
T Consensus 148 ~~~~~~~~~~~~~iD~~-t~~v~~-qI~v~------~~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 148 DFSLDNSYTMFTAIDAE-TMDVAW-QVIVD------GNLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp CCCGGGEEEEEEEEETT-TCSEEE-EEEES------SCCCCEEECSSSSEEEEEES
T ss_pred ccccccccceEEeecCc-cceeeE-EEecC------CCccceEECCCCCEEEEEec
Confidence 1123445555 444422 22222 34578999999995555543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.85 E-value=0.062 Score=50.32 Aligned_cols=192 Identities=13% Similarity=0.091 Sum_probs=92.6
Q ss_pred EEEEEeCC-CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~-~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
.++++... .+++..++..+ .....+.... .......++++||+ +|+.+.. ...+. +...+..
T Consensus 26 ~i~v~~~~~~~~i~~~~~~~--~~~~~~~~~~---~~~p~gvav~~~g~--i~v~d~~-------~~~i~-~~~~~~~-- 88 (260)
T d1rwia_ 26 NVYVTSEGMYGRVVKLATGS--TGTTVLPFNG---LYQPQGLAVDGAGT--VYVTDFN-------NRVVT-LAAGSNN-- 88 (260)
T ss_dssp CEEEEECSSSCEEEEEC------CEEECCCCS---CCSCCCEEECTTCC--EEEEETT-------TEEEE-ECTTCSC--
T ss_pred CEEEEEcCCCCEEEEEcCCC--ceEEEeccCC---ccCceEEEEcCCCC--EEEeeee-------eceee-eeeeccc--
Confidence 55555443 35777777664 2222222221 12235678999997 3454432 13343 4433332
Q ss_pred ccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 235 EPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 235 ~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
..... .+.......+++++|+ |++... ....+++++.. +.........+. ..+..+..+++|+
T Consensus 89 -~~~~~~~~~~~p~~iavd~~g~-i~v~d~-------~~~~~~~~~~~--~~~~~~~~~~~~-----~~p~~i~~~~~g~ 152 (260)
T d1rwia_ 89 -QTVLPFDGLNYPEGLAVDTQGA-VYVADR-------GNNRVVKLAAG--SKTQTVLPFTGL-----NDPDGVAVDNSGN 152 (260)
T ss_dssp -CEECCCCSCCSEEEEEECTTCC-EEEEEG-------GGTEEEEECTT--CSSCEECCCCSC-----CSCCEEEECTTCC
T ss_pred -eeeeeeeeeeecccccccccce-eEeecc-------ccccccccccc--cceeeeeeeccc-----CCcceeeecCCCC
Confidence 22222 2223334567899987 555442 23446666654 322111111222 3345677889988
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 393 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~ 393 (732)
+++. +. +..+|++++.++...+.+... ....| ..+.+. .++.||++.. +...|++++.++...
T Consensus 153 ~~v~-~~--~~~~i~~~d~~~~~~~~~~~~--~~~~p------~gi~~d----~~g~l~vsd~--~~~~i~~~~~~~~~~ 215 (260)
T d1rwia_ 153 VYVT-DT--DNNRVVKLEAESNNQVVLPFT--DITAP------WGIAVD----EAGTVYVTEH--NTNQVVKLLAGSTTS 215 (260)
T ss_dssp EEEE-EG--GGTEEEEECTTTCCEEECCCS--SCCSE------EEEEEC----TTCCEEEEET--TTTEEEEECTTCSCC
T ss_pred Eeee-cc--ccccccccccccceeeeeecc--ccCCC------ccceee----eeeeeeeeec--CCCEEEEEeCCCCeE
Confidence 6544 33 345688999877654443211 11111 122332 3345665543 234577787776655
Q ss_pred EEec
Q 004735 394 SLLD 397 (732)
Q Consensus 394 ~~lt 397 (732)
+.+.
T Consensus 216 ~~~~ 219 (260)
T d1rwia_ 216 TVLP 219 (260)
T ss_dssp EECC
T ss_pred EEEc
Confidence 4443
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.0047 Score=63.25 Aligned_cols=132 Identities=13% Similarity=0.162 Sum_probs=75.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---------------HHHHHHHCCCEEEEEcCCCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---------------SIQYWTSRGWAFVDVNYGGS 535 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---------------~~~~l~~~G~~v~~~d~rG~ 535 (732)
.+..+..|++...+ .....|+||++-|||++..-..... ....|.+ =..++.+|.+-.
T Consensus 26 ~~~~lfyw~~~s~~------~~~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~-~anllfiD~PvG 98 (421)
T d1wpxa1 26 EDKHFFFWTFESRN------DPAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNS-NATVIFLDQPVN 98 (421)
T ss_dssp SCCEEEEEEECCSS------CTTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGG-SSEEEEECCSTT
T ss_pred CCceEEEEEEEeCC------CCCCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCccccc-ccCEEEEecCCC
Confidence 35678888876643 1345799999999998643321100 0001111 147888896544
Q ss_pred CCCChhhHHhhccCCCcccHHHHHHHHHHHHhc-CCC--CCCcEEEEEcChHHHHHHHHHh----CC---CcceEEEeec
Q 004735 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKA--DEKRLCITGGSAGGYTTLAALA----FR---DTFKAGASLY 605 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~--d~~ri~i~G~S~GG~~a~~~~~----~p---~~~~a~v~~~ 605 (732)
.|+...-...... .....+|+.+++....++ +.. ....+.|.|-|+||..+-.++. +. -.++++++.+
T Consensus 99 tGfSy~~~~~~~~--~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGn 176 (421)
T d1wpxa1 99 VGFSYSGSSGVSN--TVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGN 176 (421)
T ss_dssp STTCBCSSCCCCS--HHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEES
T ss_pred CCceecCCccccc--hHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecC
Confidence 5554321111100 011244555555544333 322 2357999999999998876663 22 2478999999
Q ss_pred CcCCHH
Q 004735 606 GVADLS 611 (732)
Q Consensus 606 ~~~d~~ 611 (732)
|+.|..
T Consensus 177 g~~dp~ 182 (421)
T d1wpxa1 177 GLTDPL 182 (421)
T ss_dssp CCCCHH
T ss_pred Ccccch
Confidence 988753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.017 Score=54.88 Aligned_cols=118 Identities=10% Similarity=0.028 Sum_probs=64.1
Q ss_pred CCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc
Q 004735 163 KDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
.++.+.+++... ++.. .+... .....++|+++.++....+. ..+.++++.+.+. ...+..
T Consensus 99 ~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~--------~~v~~~~~~~~~~--~~~~~~ 159 (287)
T d1pgua2 99 NDDDLLILQSFT--GDIIKSVRLN-------SPGSAVSLSQNYVAVGLEEG--------NTIQVFKLSDLEV--SFDLKT 159 (287)
T ss_dssp TTSEEEEEETTT--CCEEEEEECS-------SCEEEEEECSSEEEEEETTT--------SCEEEEETTEEEE--EEECSS
T ss_pred ecccceeeeccc--eeeeeecccc-------ceeeeeeccCcceeeecccc--------ceeeeeeccccce--eeeeee
Confidence 455677887765 4322 22221 12235788898866655432 3455666654330 112221
Q ss_pred -CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 242 -GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 242 -~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
........+|||||++|+.... ...|.++|+. +++... ....... ..+..+.|+|+++
T Consensus 160 ~~~~~v~~~~~s~~~~~l~~g~~--------dg~i~i~d~~-~~~~~~-~~~~~h~----~~v~~~~~~p~~~ 218 (287)
T d1pgua2 160 PLRAKPSYISISPSETYIAAGDV--------MGKILLYDLQ-SREVKT-SRWAFRT----SKINAISWKPAEK 218 (287)
T ss_dssp CCSSCEEEEEECTTSSEEEEEET--------TSCEEEEETT-TTEEEE-CCSCCCS----SCEEEEEECCCC-
T ss_pred ccCCceeEEEeccCccccccccc--------cccccceeec-cccccc-ccccccc----cccceeeeccccc
Confidence 2234566789999998876552 2348889987 564311 1122222 4456678887654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.19 Score=47.69 Aligned_cols=159 Identities=10% Similarity=-0.040 Sum_probs=79.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEE--ECCEEEEEeCCCC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI--FGDTVIFSNYKDQ 165 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~--~~~~i~f~~~~~~ 165 (732)
..+.+++|+| ++.|+-. . .++...+|..... .....+.. ..-+...+.+..+ .++.++++...++
T Consensus 12 d~I~~l~fsp~~~~L~s~-s---~Dg~v~iwd~~~~--~~~~~~~~------~~~h~~~V~~v~f~~~~~~~l~sg~~d~ 79 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLIT-S---WDGSLTVYKFDIQ--AKNVDLLQ------SLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp SCEEEEEEEGGGTEEEEE-E---TTSEEEEEEEETT--TTEEEEEE------EEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred CCEEEEEEeCCCCEEEEE-E---CCCeEEEEEccCC--CcceEEEE------ecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence 3567999999 7655443 2 3577778876543 12111110 0011222333333 3456777877888
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc--C-
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--G- 242 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--~- 242 (732)
.+.++++.. +.......... ........+.+++..++....+ ..+.++|+.++... ...... .
T Consensus 80 ~v~~w~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~wd~~~~~~~-~~~~~~~~~~ 145 (342)
T d1yfqa_ 80 EILKVDLIG--SPSFQALTNNE--ANLGICRICKYGDDKLIAASWD---------GLIEVIDPRNYGDG-VIAVKNLNSN 145 (342)
T ss_dssp CEEEECSSS--SSSEEECBSCC--CCSCEEEEEEETTTEEEEEETT---------SEEEEECHHHHTTB-CEEEEESCSS
T ss_pred ceeeeeccc--ccccccccccc--cccccccccccccccccccccc---------cccceeeccccccc-eeeecccccc
Confidence 999999976 33322222110 1111222345566665554432 45666676543200 111110 0
Q ss_pred --CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec
Q 004735 243 --SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 281 (732)
Q Consensus 243 --~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~ 281 (732)
........+++++..++... ....+.++++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~--------~d~~i~~~~~~ 178 (342)
T d1yfqa_ 146 NTKVKNKIFTMDTNSSRLIVGM--------NNSQVQWFRLP 178 (342)
T ss_dssp SSSSCCCEEEEEECSSEEEEEE--------STTEEEEEESS
T ss_pred cccceeeeeeeeccCCceeeec--------CCCcEEEEecc
Confidence 11112235677777776655 23458888887
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.54 E-value=0.0032 Score=62.72 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.4
Q ss_pred CcEEEEEcChHHHHHHHHHh
Q 004735 574 KRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~ 593 (732)
.||-|+||||||..+-+++.
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~ 124 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVS 124 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHH
T ss_pred CceeEeecccccHHHHHHHH
Confidence 58999999999999877664
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.53 E-value=0.021 Score=54.87 Aligned_cols=115 Identities=10% Similarity=-0.025 Sum_probs=60.9
Q ss_pred CCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 146 g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
++.++.++++ ..+++...|+.|.++|++++ .....+....+ ........+|+|++..++++.... ..|.
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~-~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~sg~~d--------~~v~ 82 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQ-AKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQ--------GEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETT-TTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETT--------SCEE
T ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEEccCC-CcceEEEEecC-CCCCEEEEEEeCCCCCEEEEcccc--------ccee
Confidence 3445555533 34445557888888888652 22222211000 122346678999877666665533 4677
Q ss_pred EEEcCCCCccccEEcc-cC-CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec
Q 004735 225 AIALNGQNIQEPKVLV-SG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 281 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt-~~-~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~ 281 (732)
+++...+. ..... .. ........+.+++..++..+ ....+.++|+.
T Consensus 83 ~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~wd~~ 130 (342)
T d1yfqa_ 83 KVDLIGSP---SFQALTNNEANLGICRICKYGDDKLIAAS--------WDGLIEVIDPR 130 (342)
T ss_dssp EECSSSSS---SEEECBSCCCCSCEEEEEEETTTEEEEEE--------TTSEEEEECHH
T ss_pred eeeccccc---ccccccccccccccccccccccccccccc--------cccccceeecc
Confidence 88887665 33322 11 11222234556666666555 23347777775
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.34 E-value=0.37 Score=45.19 Aligned_cols=219 Identities=13% Similarity=0.077 Sum_probs=107.1
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceecCCCC-C-CCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY-G-EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~-~-~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
+.|++.+....+|.++|.++ ...+.+.... . .......+..+.++...++++.... ...|.+++.++..
T Consensus 34 g~i~VaD~~n~rI~v~d~~G--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~g~~ 104 (279)
T d1q7fa_ 34 NDIIVADTNNHRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-------THQIQIYNQYGQF 104 (279)
T ss_dssp CCEEEEEGGGTEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-------GCEEEEECTTSCE
T ss_pred CCEEEEECCCCEEEEEeCCC--CEEEEecccCCCcccccccccccccccccccceeccCC-------ccccccccccccc
Confidence 36777766667899998874 3333332110 0 0011123344555555445544322 3578888876543
Q ss_pred ccccEEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 233 IQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
.+.+.. ........+..++|+ +++... ....+++++. +|+. +..+...... .....+..+++
T Consensus 105 ---~~~~~~~~~~~p~~~avd~~G~-i~v~~~-------~~~~~~~~~~--~g~~--~~~~g~~~~~--~~~~~i~~d~~ 167 (279)
T d1q7fa_ 105 ---VRKFGATILQHPRGVTVDNKGR-IIVVEC-------KVMRVIIFDQ--NGNV--LHKFGCSKHL--EFPNGVVVNDK 167 (279)
T ss_dssp ---EEEECTTTCSCEEEEEECTTSC-EEEEET-------TTTEEEEECT--TSCE--EEEEECTTTC--SSEEEEEECSS
T ss_pred ---eeecCCCcccccceeccccCCc-EEEEee-------ccceeeEecc--CCce--eecccccccc--cccceeeeccc
Confidence 333321 112233456788887 444431 2345777764 4554 2332222100 34455677888
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
|++|+.... ...|++++.++.....+-. ......| ..+.+-+ +| .||++. ..+...|.+++.++.
T Consensus 168 g~i~v~d~~---~~~V~~~d~~G~~~~~~g~-~g~~~~P------~giavD~---~G-~i~Vad-~~~~~~v~~f~~~G~ 232 (279)
T d1q7fa_ 168 QEIFISDNR---AHCVKVFNYEGQYLRQIGG-EGITNYP------IGVGINS---NG-EILIAD-NHNNFNLTIFTQDGQ 232 (279)
T ss_dssp SEEEEEEGG---GTEEEEEETTCCEEEEESC-TTTSCSE------EEEEECT---TC-CEEEEE-CSSSCEEEEECTTSC
T ss_pred eeEEeeecc---ccceeeeecCCceeeeecc-cccccCC------ccccccc---CC-eEEEEE-CCCCcEEEEECCCCC
Confidence 876654333 3468888887765555421 1111111 1223321 44 466543 333345777777655
Q ss_pred ceEEeccCC--CceEEe-eEeCCEEE
Q 004735 392 SLSLLDIPF--TDIDNI-TLGNDCLF 414 (732)
Q Consensus 392 ~~~~lt~~~--~~v~~~-~~~~~~~~ 414 (732)
-++.+..+. .....+ ..+++.++
T Consensus 233 ~~~~~~~~~~~~~p~~vav~~dG~l~ 258 (279)
T d1q7fa_ 233 LISALESKVKHAQCFDVALMDDGSVV 258 (279)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred EEEEEeCCCCCCCEeEEEEeCCCcEE
Confidence 455554332 234444 34455543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.22 E-value=0.92 Score=47.25 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=30.1
Q ss_pred EEEEEEECCCCceE-EeccCCCceE-EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 381 SYLGILDDFGHSLS-LLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 381 ~~ly~~~~~~~~~~-~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
..|..+|+.+|+.. +...+..... .++.. +.++|..+ . ...|+.+|.++|+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~Ta-gglVF~G~-~--dg~l~A~Da~tGe 490 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTA-GNLVFQGT-A--AGQMHAYSADKGE 490 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEET-TTEEEEEC-T--TSEEEEEETTTCC
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEEC-CCEEEEEC-C--CCcEEEEECCCCc
Confidence 46888899888754 2222221112 22333 44666543 2 3579999999998
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.044 Score=52.62 Aligned_cols=146 Identities=10% Similarity=-0.020 Sum_probs=79.6
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
.+++...++.|.++|+.. +......... ..... .++++++.++....+ ..|+++|+...+ .
T Consensus 189 ~l~s~~~dg~i~~~d~~~--~~~~~~~~~~---~~~v~--~~~~~~~~l~s~s~d---------~~i~iwd~~~~~---~ 249 (342)
T d2ovrb2 189 HVVSGSLDTSIRVWDVET--GNCIHTLTGH---QSLTS--GMELKDNILVSGNAD---------STVKIWDIKTGQ---C 249 (342)
T ss_dssp EEEEEETTSCEEEEETTT--CCEEEEECCC---CSCEE--EEEEETTEEEEEETT---------SCEEEEETTTCC---E
T ss_pred EEEEEeCCCeEEEeeccc--ceeeeEeccc---cccee--EEecCCCEEEEEcCC---------CEEEEEeccccc---c
Confidence 344555678899999986 4433222221 11122 356667765554432 468888988765 3
Q ss_pred EEcccC-CC-ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCC-CCCccccCcCceeCCCCc
Q 004735 237 KVLVSG-SD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF-DPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 237 ~~lt~~-~~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~-~~~~~~~~~~~~wspDg~ 313 (732)
...... .. ......++++++.++..+ ....|.++|+. +|+. +..+... .......+..++|+|||.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s--------~Dg~i~iwd~~-tg~~--i~~~~~~~~~~~~~~v~~v~~s~~~~ 318 (342)
T d2ovrb2 250 LQTLQGPNKHQSAVTCLQFNKNFVITSS--------DDGTVKLWDLK-TGEF--IRNLVTLESGGSGGVVWRIRASNTKL 318 (342)
T ss_dssp EEEECSTTSCSSCEEEEEECSSEEEEEE--------TTSEEEEEETT-TCCE--EEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred cccccccceeeeceeecccCCCeeEEEc--------CCCEEEEEECC-CCCE--EEEEecccCCCCCCCEEEEEECCCCC
Confidence 333222 11 112234566777776554 23459999998 7765 2222211 000003466789999987
Q ss_pred EEEEEeccCC--eeeEEEEecc
Q 004735 314 LFFVTDRKNG--FWNLHKWIES 333 (732)
Q Consensus 314 l~~~~~~~~g--~~~l~~~d~~ 333 (732)
++..... .| ...|+++|.+
T Consensus 319 ~la~g~~-dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 319 VCAVGSR-NGTEETKLLVLDFD 339 (342)
T ss_dssp EEEEECS-SSSSCCEEEEEECC
T ss_pred EEEEEeC-CCCCeeEEEEEeCC
Confidence 5555544 44 3457777754
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.98 Score=42.35 Aligned_cols=174 Identities=10% Similarity=0.063 Sum_probs=86.2
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
..|.+.|+...+ ......+.. .....+++||+.|+..+. ...|.++|+. .++. +.......
T Consensus 157 ~~i~~~d~~~~~---~~~~~~~~~-~~~~~~~~~~~~l~s~~~--------dg~i~~~d~~-~~~~--~~~~~~~~---- 217 (342)
T d2ovrb2 157 FMVKVWDPETET---CLHTLQGHT-NRVYSLQFDGIHVVSGSL--------DTSIRVWDVE-TGNC--IHTLTGHQ---- 217 (342)
T ss_dssp SCEEEEEGGGTE---EEEEECCCS-SCEEEEEECSSEEEEEET--------TSCEEEEETT-TCCE--EEEECCCC----
T ss_pred CeEEEeecccce---eeEEEcCcc-cccccccCCCCEEEEEeC--------CCeEEEeecc-ccee--eeEecccc----
Confidence 456667776554 222222221 122456778998876552 2348889988 6654 34444443
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
..+. .++++++++++... .+. |..+|....+................ .+.+ +++ ++++...+|.
T Consensus 218 ~~v~--~~~~~~~~l~s~s~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~-~~~s~s~Dg~ 281 (342)
T d2ovrb2 218 SLTS--GMELKDNILVSGNA-DST--VKIWDIKTGQCLQTLQGPNKHQSAVT-----CLQF-----NKN-FVITSSDDGT 281 (342)
T ss_dssp SCEE--EEEEETTEEEEEET-TSC--EEEEETTTCCEEEEECSTTSCSSCEE-----EEEE-----CSS-EEEEEETTSE
T ss_pred ccee--EEecCCCEEEEEcC-CCE--EEEEecccccccccccccceeeecee-----eccc-----CCC-eeEEEcCCCE
Confidence 2333 34455565555444 344 56667766654433322111111111 1122 444 4455556775
Q ss_pred EEEEEEECCCCce-EEeccC-----CCceEEee-EeCCEEEEEEeCCCC--CcEEEEEEcC
Q 004735 381 SYLGILDDFGHSL-SLLDIP-----FTDIDNIT-LGNDCLFVEGASGVE--PSSVAKVTLD 432 (732)
Q Consensus 381 ~~ly~~~~~~~~~-~~lt~~-----~~~v~~~~-~~~~~~~~~~~~~~~--~~~ly~~dl~ 432 (732)
-.| +++.+++. +.+... ...|..+. .+++.+++.+ +.++ ...|+++|++
T Consensus 282 i~i--wd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g-~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 282 VKL--WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG-SRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEE--EETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE-CSSSSSCCEEEEEECC
T ss_pred EEE--EECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEE-eCCCCCeeEEEEEeCC
Confidence 555 47777764 444321 23466663 4444444444 4333 3457777764
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.47 E-value=0.14 Score=50.62 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=57.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCC--EEEEEEeccC---------CCCCCceeEEE
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRR---------QDALNSTTEIV 224 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~--~l~~~~~~~~---------~~~~~~~~~l~ 224 (732)
.++..+..+.+|.++|+++ -+..++..-+.....+ .++.+++++ +|++..+..- +.+......+.
T Consensus 101 ylFVNDkan~RVAvIdl~~--fkt~kIi~iPn~~~~H--G~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 101 FLFMNDKANTRVARVRCDV--MKCDAILEIPNAKGIH--GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEETTTTEEEEEETTT--TEEEEEEECSSCCSEE--EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred EEEEEcCCCceEEEEECcc--eeeeEEEecCCCCCCc--eeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 4555555667999999998 6666655432222222 234444554 4443333210 11223345667
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccC
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~ 265 (732)
.+|.++.++ ..++.-+. ...+..+||||+++++.+.+.
T Consensus 177 ~ID~~tm~V--~~QV~V~g-~ld~~~~s~dGK~af~TsyNS 214 (459)
T d1fwxa2 177 AVDADKWEV--AWQVLVSG-NLDNCDADYEGKWAFSTSYNS 214 (459)
T ss_dssp EEETTTTEE--EEEEEESS-CCCCEEECSSSSEEEEEESCT
T ss_pred EEecCCceE--EEEeeeCC-ChhccccCCCCCEEEEEeccc
Confidence 899998763 23333222 234578999999988877543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.14 E-value=2.3 Score=44.14 Aligned_cols=51 Identities=10% Similarity=-0.099 Sum_probs=29.1
Q ss_pred EEEEEEECCCCceE-EeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 381 SYLGILDDFGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 381 ~~ly~~~~~~~~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
..|..+|+.+|+.. +...+....... +..+ .++|..+ . ...++.+|.++|+
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~Tag-glVf~G~-~--dg~l~A~Da~tGe 496 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKG-GLVWYAT-L--DGYLKALDNKDGK 496 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETT-TEEEEEC-T--TSEEEEEETTTCC
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecC-CEEEEEC-C--CCeEEEEECCCCc
Confidence 35778888888754 222222222222 3334 4566543 2 3579999999997
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.83 E-value=0.72 Score=44.53 Aligned_cols=152 Identities=11% Similarity=0.067 Sum_probs=73.9
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeece----eecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADG----IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~----~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.++|...+.+.||++|+++ ...+.+..+ ...--|. .+.-++.-+++++.+..... .-.+|.++...+
T Consensus 41 SlI~gTdK~~Gl~vYdL~G--~~l~~~~~G----r~NNVDvr~~~~l~~~~~di~vasnR~~~~~---~l~~~~id~~~~ 111 (353)
T d1h6la_ 41 SKLITTNKKSGLAVYSLEG--KMLHSYHTG----KLNNVDIRYDFPLNGKKVDIAAASNRSEGKN---TIEIYAIDGKNG 111 (353)
T ss_dssp CEEEEEETTSCCEEEETTC--CEEEECCSS----CEEEEEEEEEEEETTEEEEEEEEEECCTTTC---EEEEEEEETTTT
T ss_pred cEEEEEcCcCCEEEEcCCC--cEEEecccC----CcCccccccccccCCcceEEEEEeCCcCcce---eEEEEEecCccc
Confidence 4666666777799999985 555555543 1211122 23222333444444322111 234666766555
Q ss_pred CccccEEcccCC-------Cceecccc--CCC-CCeEEEEeccCCCCCCCccEEEEEEecCCCce--eeeEEecCCCCCc
Q 004735 232 NIQEPKVLVSGS-------DFYAFPRM--DPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDV--YKRVCVAGFDPTI 299 (732)
Q Consensus 232 ~~~~~~~lt~~~-------~~~~~p~~--SPD-G~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~--~~~~~~~~~~~~~ 299 (732)
. ...++... ....+.++ +|+ |+..+|+. +..+ ..+.|.+.....|.+ +.++.+...
T Consensus 112 ~---l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~-~k~G----~v~q~~l~~~~~g~v~~~lvr~f~~~---- 179 (353)
T d1h6la_ 112 T---LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVT-GKEG----EFEQYELNADKNGYISGKKVRAFKMN---- 179 (353)
T ss_dssp E---EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEE-CSSS----EEEEEEEEECTTSSEEEEEEEEEECS----
T ss_pred c---cccccccccccccccCcceEEEEEecCCCCeEEEEEE-cCCc----eEEEEEEEcCCCCceeeEeeeccCCC----
Confidence 4 44443221 12345566 775 55556776 3322 233444444434543 223333332
Q ss_pred cccCcCceeCCCCcEEEEEeccCCeeeEEEEec
Q 004735 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~ 332 (732)
.........++.+.+|++....| +|+++.
T Consensus 180 -~q~EGCVvDde~~~LyisEE~~G---iw~~~a 208 (353)
T d1h6la_ 180 -SQTEGMAADDEYGSLYIAEEDEA---IWKFSA 208 (353)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTE---EEEEES
T ss_pred -CccceEEEeCCCCcEEEecCccc---eEEEEe
Confidence 23456667666555555555233 555544
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.98 E-value=0.73 Score=44.50 Aligned_cols=108 Identities=15% Similarity=0.048 Sum_probs=64.2
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCC----------CCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEE
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDA----------LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAW 260 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~----------~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~ 260 (732)
...+|..+..||++ +++ .++.... ......++..+ +++ .+.+..+-.+.++.++|||++.|+.
T Consensus 150 ~~pNDv~~~~~g~f-y~T-nd~~~~~~~~~~~e~~~~~~~g~v~~~~--~~~---~~~~~~~l~~pNGI~~s~d~~~lyV 222 (340)
T d1v04a_ 150 PSVNDIVAVGPEHF-YAT-NDHYFIDPYLKSWEMHLGLAWSFVTYYS--PND---VRVVAEGFDFANGINISPDGKYVYI 222 (340)
T ss_dssp SSEEEEEEEETTEE-EEE-ESCSCCSHHHHHHHHHTTCCCEEEEEEC--SSC---EEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCccceEEecCCCE-EEe-cCccCcChhhhhhhHhhcCCceeEEEEc--CCc---eEEEcCCCCccceeEECCCCCEEEE
Confidence 34578888888873 444 3332110 01134555554 455 5666666667889999999998876
Q ss_pred EeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC-CCcEEEE
Q 004735 261 IEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFV 317 (732)
Q Consensus 261 ~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp-Dg~l~~~ 317 (732)
.... ..+|++++++.+++........ .. ..+..+.+.+ +|.++..
T Consensus 223 a~t~-------~~~i~~y~~~~~~~l~~~~~~~-l~----~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 223 AELL-------AHKIHVYEKHANWTLTPLRVLS-FD----TLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp EEGG-------GTEEEEEEECTTSCEEEEEEEE-CS----SEEEEEEECTTTCCEEEE
T ss_pred EeCC-------CCeEEEEEeCCCcccceEEEec-CC----CCCCccEEecCCCEEEEE
Confidence 6532 4559999998555544333332 22 4556777865 4445443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=3.1 Score=37.42 Aligned_cols=228 Identities=11% Similarity=0.015 Sum_probs=106.1
Q ss_pred CCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 146 g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
++.+++++++ .+++...|+.|.++|+.+ ++.. .+... ..... ++++|++.|+.... + ..|.
T Consensus 17 ~V~c~~~d~~-~l~sgs~Dg~i~vWd~~~--~~~~~~l~~H----~~~V~--~v~~~~~~l~s~s~-D--------~~i~ 78 (293)
T d1p22a2 17 GVYCLQYDDQ-KIVSGLRDNTIKIWDKNT--LECKRILTGH----TGSVL--CLQYDERVIITGSS-D--------STVR 78 (293)
T ss_dssp CEEEEECCSS-EEEEEESSSCEEEEESSS--CCEEEEECCC----SSCEE--EEECCSSEEEEEET-T--------SCEE
T ss_pred CEEEEEEcCC-EEEEEeCCCeEEEEECCC--CcEEEEEecC----CCCEe--eeecccceeecccc-c--------cccc
Confidence 4445666544 455666788899999987 5543 34432 12223 35668887554433 2 4677
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecCCCCCccccC
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESP 303 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~~~~~~~~~~ 303 (732)
++++..+. .......... ....+.+....++... . ...+.+++.. ... ......+.... ..+
T Consensus 79 ~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~-~~~~~~~~~~~~~~~----~~v 141 (293)
T d1p22a2 79 VWDVNTGE---MLNTLIHHCE-AVLHLRFNNGMMVTCS-K-------DRSIAVWDMA-SPTDITLRRVLVGHR----AAV 141 (293)
T ss_dssp EEESSSCC---EEEEECCCCS-CEEEEECCTTEEEEEE-T-------TSCEEEEECS-SSSCCEEEEEECCCS----SCE
T ss_pred cccccccc---cccccccccc-ccccccccccceeecc-c-------ccceeEeecc-ccccccccccccccc----ccc
Confidence 78888765 3333222211 1223344455565544 1 2225666766 332 22222222222 222
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEE
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~l 383 (732)
....+. ....+.... . ..+..+|..+++........ .... ..+.+ ++.. +++...++.-.|
T Consensus 142 ~~~~~~--~~~~~~~s~-d--~~i~~~d~~~~~~~~~~~~~---~~~v-----~~~~~-----~~~~-l~~~~~dg~i~i 202 (293)
T d1p22a2 142 NVVDFD--DKYIVSASG-D--RTIKVWNTSTCEFVRTLNGH---KRGI-----ACLQY-----RDRL-VVSGSSDNTIRL 202 (293)
T ss_dssp EEEEEE--TTEEEEEET-T--SEEEEEETTTCCEEEEEECC---SSCE-----EEEEE-----ETTE-EEEEETTSCEEE
T ss_pred ccceec--ccccccccC-C--CceeeecCCCCcEEEEEccc---cccc-----ccccC-----CCCe-EEEecCCCEEEE
Confidence 223333 233333322 2 34666777776543322211 0110 01111 3444 445555665544
Q ss_pred EEEECCCCceEEeccC-CCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 384 GILDDFGHSLSLLDIP-FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 384 y~~~~~~~~~~~lt~~-~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
| ++.+......... ...+..+..+ ...++.++.. ..|.++|+.+
T Consensus 203 ~--d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sg~~d---g~i~iwd~~~ 247 (293)
T d1p22a2 203 W--DIECGACLRVLEGHEELVRCIRFD-NKRIVSGAYD---GKIKVWDLVA 247 (293)
T ss_dssp E--ETTTCCEEEEECCCSSCEEEEECC-SSEEEEEETT---SCEEEEEHHH
T ss_pred E--ecccceeeeeecccceeeeecccc-ceEEEEEcCC---CEEEEEECCC
Confidence 4 7777665443333 3334443333 3444444432 3466666544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.53 E-value=2.9 Score=41.81 Aligned_cols=41 Identities=7% Similarity=0.159 Sum_probs=26.0
Q ss_pred CCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCC
Q 004735 79 LTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKA 124 (732)
Q Consensus 79 ~~~~~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (732)
.+++.+...-..+.+++|.|.++++.++.. .|+ |++.+.++
T Consensus 17 f~~~~ia~~L~~P~~la~~pdg~llVter~---~G~--i~~v~~~~ 57 (450)
T d1crua_ 17 FDKKVILSNLNKPHALLWGPDNQIWLTERA---TGK--ILRVNPES 57 (450)
T ss_dssp SCEEEEECCCSSEEEEEECTTSCEEEEETT---TCE--EEEECTTT
T ss_pred cEEEEEECCCCCceEEEEeCCCeEEEEEec---CCE--EEEEECCC
Confidence 455555555457789999996688888742 355 44455443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.44 E-value=2.9 Score=40.04 Aligned_cols=174 Identities=10% Similarity=0.000 Sum_probs=85.3
Q ss_pred eceeecCCCCEEEEEEeccCCC---CCCceeEEEEEEcCCCCccccEEcc--cC-CC---ce-ec--cccCCCCCeEEEE
Q 004735 194 ADGIFDPRFNRYVTVREDRRQD---ALNSTTEIVAIALNGQNIQEPKVLV--SG-SD---FY-AF--PRMDPRGERMAWI 261 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~---~~~~~~~l~~~d~~~~~~~~~~~lt--~~-~~---~~-~~--p~~SPDG~~la~~ 261 (732)
-|....|||..++.+....+.. .......|+++|+++.+.. ...+. .+ .. |. .+ ..-.+||+...|+
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~-~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA-VSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCC-EEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCc-ceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 4567788886433322111111 1122479999999875410 23332 11 11 11 11 1225678765565
Q ss_pred eccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc--------------CCeeeE
Q 004735 262 EWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK--------------NGFWNL 327 (732)
Q Consensus 262 ~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~--------------~g~~~l 327 (732)
- ++.+. ....+++.++.+ +.++..+..+.... - .++.++....||++|++.+.. .+...+
T Consensus 117 v-nH~~~-~~~ieif~~~~~-~~~l~~~~~v~~~~-~--~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v 190 (340)
T d1v04a_ 117 V-NHPGS-SSTVEVFKFQEE-EKSLLHLKTIRHKL-L--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 190 (340)
T ss_dssp E-ECSTT-CCEEEEEEEETT-TTEEEEEEEECCTT-C--SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEE
T ss_pred E-eccCC-CceeEEEEEeCC-CCeEEEEeecCCcc-c--cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeE
Confidence 4 44321 123344444443 34565556655543 1 456678888888877764321 123355
Q ss_pred EEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 328 HKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 328 ~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
+.++ +++.+.+..+- .+. +.+.+.+ +++.||++....+.-..|.++.
T Consensus 191 ~~~~--~~~~~~~~~~l------~~p---NGI~~s~---d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 191 TYYS--PNDVRVVAEGF------DFA---NGINISP---DGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp EEEC--SSCEEEEEEEE------SSE---EEEEECT---TSSEEEEEEGGGTEEEEEEECT
T ss_pred EEEc--CCceEEEcCCC------Ccc---ceeEECC---CCCEEEEEeCCCCeEEEEEeCC
Confidence 5555 44555444221 111 1233332 6778888776666655665543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.86 E-value=4.2 Score=36.46 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=41.6
Q ss_pred eecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC-CCceeccccCCCCCeEEEEeccCCCCCCCccEE
Q 004735 197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 275 (732)
Q Consensus 197 ~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l 275 (732)
++++||++|+-...+ ..|.++|+.+++ ......+ ...+. .+++|++.|+-.+. ...+
T Consensus 20 c~~~d~~~l~sgs~D---------g~i~vWd~~~~~---~~~~l~~H~~~V~--~v~~~~~~l~s~s~--------D~~i 77 (293)
T d1p22a2 20 CLQYDDQKIVSGLRD---------NTIKIWDKNTLE---CKRILTGHTGSVL--CLQYDERVIITGSS--------DSTV 77 (293)
T ss_dssp EEECCSSEEEEEESS---------SCEEEEESSSCC---EEEEECCCSSCEE--EEECCSSEEEEEET--------TSCE
T ss_pred EEEEcCCEEEEEeCC---------CeEEEEECCCCc---EEEEEecCCCCEe--eeecccceeecccc--------cccc
Confidence 478899986555442 467788998887 4443333 33333 45668887765542 2338
Q ss_pred EEEEecCCCce
Q 004735 276 WVGYISENGDV 286 (732)
Q Consensus 276 ~v~d~~~~g~~ 286 (732)
.++++. .+..
T Consensus 78 ~~~~~~-~~~~ 87 (293)
T d1p22a2 78 RVWDVN-TGEM 87 (293)
T ss_dssp EEEESS-SCCE
T ss_pred cccccc-cccc
Confidence 888887 5544
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=2.3 Score=39.13 Aligned_cols=244 Identities=11% Similarity=-0.077 Sum_probs=109.8
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEecc-CCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
..++++|+.+ ++-+++++-+. -|.......-++ .|+.+.... .........+++++|..+.+ -+.+....
T Consensus 19 ~~~~~yd~~t--~~W~~~~~~p~---~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~---w~~~~~~p 89 (288)
T d1zgka1 19 SYLEAYNPSN--GTWLRLADLQV---PRSGLAGCVVGG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQ---WSPCAPMS 89 (288)
T ss_dssp CCEEEEETTT--TEEEECCCCSS---CCBSCEEEEETT-EEEEECCEEEETTEEEECCCEEEEETTTTE---EEECCCCS
T ss_pred ceEEEEECCC--CeEEECCCCCC---ccceeEEEEECC-EEEEEeCcccCCCCccccchhhhccccccc---cccccccc
Confidence 3688999987 66677765421 222222233344 444432211 01111124688999998876 44444222
Q ss_pred C-ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc-eeCCCCcEEEEEecc
Q 004735 244 D-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP-KWSSKGELFFVTDRK 321 (732)
Q Consensus 244 ~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~-~wspDg~l~~~~~~~ 321 (732)
. ....-...-||+ |+......... ......+++.. +... ....... ...... ...-++++++.....
T Consensus 90 ~~r~~~~~~~~~~~-i~~~gg~~~~~--~~~~~~~~~~~-~~~~---~~~~~~~----~~r~~~~~~~~~~~~~~~GG~~ 158 (288)
T d1zgka1 90 VPRNRIGVGVIDGH-IYAVGGSHGCI--HHNSVERYEPE-RDEW---HLVAPML----TRRIGVGVAVLNRLLYAVGGFD 158 (288)
T ss_dssp SCCBTCEEEEETTE-EEEECCEETTE--ECCCEEEEETT-TTEE---EECCCCS----SCCBSCEEEEETTEEEEECCBC
T ss_pred ceecceecccccee-eEEecceeccc--ccceeeeeccc-cCcc---ccccccc----cccccceeeeeeecceEecCcc
Confidence 1 111111222554 43332111110 12234555655 3322 1111111 000111 111233444432220
Q ss_pred --CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC---EEEEEEEECCCCceEEe
Q 004735 322 --NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLL 396 (732)
Q Consensus 322 --~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g---~~~ly~~~~~~~~~~~l 396 (732)
.....++.+|+.+++.............. .... .++.++.....++ ...++.++..+.+++.+
T Consensus 159 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~ 226 (288)
T d1zgka1 159 GTNRLNSAECYYPERNEWRMITAMNTIRSGA-------GVCV-----LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 226 (288)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSC-------EEEE-----ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred cccccceEEEeeccccccccccccccccccc-------cccc-----eeeeEEEecCccccccccceeeeeecceeeecc
Confidence 12345788888887766554221111111 1111 2234443322221 24577889988888887
Q ss_pred ccCCCc--eEEeeEeCCEEEEEEeCC--CCCcEEEEEEcCCCcceeee
Q 004735 397 DIPFTD--IDNITLGNDCLFVEGASG--VEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 397 t~~~~~--v~~~~~~~~~~~~~~~~~--~~~~~ly~~dl~~~~~~~lt 440 (732)
...... ...+..-+++++++.... .....++++|+.+++.+.+.
T Consensus 227 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 274 (288)
T d1zgka1 227 APMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT 274 (288)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred cCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECC
Confidence 643221 112233467787776432 22345899999988765543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.22 E-value=4.1 Score=37.25 Aligned_cols=258 Identities=7% Similarity=-0.122 Sum_probs=113.2
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeC---------CCCeEEE
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNY---------KDQRLYK 169 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~---------~~~~l~~ 169 (732)
|+.+|..-... ......+.++++.++ +.+.+.+.+ ..| . +.+....++.|++.-. ....+|+
T Consensus 4 g~~iyv~GG~~-~~~~~~~~~yd~~t~-~W~~~~~~p-~~R-----~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 74 (288)
T d1zgka1 4 GRLIYTAGGYF-RQSLSYLEAYNPSNG-TWLRLADLQ-VPR-----S-GLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 74 (288)
T ss_dssp CCCEEEECCBS-SSBCCCEEEEETTTT-EEEECCCCS-SCC-----B-SCEEEEETTEEEEECCEEEETTEEEECCCEEE
T ss_pred CCEEEEECCcC-CCCCceEEEEECCCC-eEEECCCCC-Ccc-----c-eeEEEEECCEEEEEeCcccCCCCccccchhhh
Confidence 45555543322 233345677777743 444554332 112 1 1222333555544321 1237999
Q ss_pred EeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceecc
Q 004735 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFP 249 (732)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p 249 (732)
+|..+ ..-+.+...+ ..+.......-+|+. +.+....... .....+..+..+.. -............+
T Consensus 75 yd~~~--~~w~~~~~~p---~~r~~~~~~~~~~~i-~~~gg~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~r~~~ 142 (288)
T d1zgka1 75 YNPMT--NQWSPCAPMS---VPRNRIGVGVIDGHI-YAVGGSHGCI---HHNSVERYEPERDE---WHLVAPMLTRRIGV 142 (288)
T ss_dssp EETTT--TEEEECCCCS---SCCBTCEEEEETTEE-EEECCEETTE---ECCCEEEEETTTTE---EEECCCCSSCCBSC
T ss_pred ccccc--cccccccccc---ceecceeccccceee-EEecceeccc---ccceeeeeccccCc---cccccccccccccc
Confidence 99986 5566665432 122222233335553 3332211111 12445666776654 22222211111112
Q ss_pred ccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc-C-CeeeE
Q 004735 250 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK-N-GFWNL 327 (732)
Q Consensus 250 ~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~-~-g~~~l 327 (732)
........+++...... ......++.+|.. .++.... .... . ..........+++++...... . ....+
T Consensus 143 ~~~~~~~~~~~~GG~~~--~~~~~~~~~~d~~-~~~~~~~---~~~~-~--~~~~~~~~~~~~~i~i~GG~~~~~~~~~~ 213 (288)
T d1zgka1 143 GVAVLNRLLYAVGGFDG--TNRLNSAECYYPE-RNEWRMI---TAMN-T--IRSGAGVCVLHNCIYAAGGYDGQDQLNSV 213 (288)
T ss_dssp EEEEETTEEEEECCBCS--SCBCCCEEEEETT-TTEEEEC---CCCS-S--CCBSCEEEEETTEEEEECCBCSSSBCCCE
T ss_pred eeeeeeecceEecCccc--ccccceEEEeecc-ccccccc---cccc-c--ccccccccceeeeEEEecCccccccccce
Confidence 11122234444432221 1234457888877 5543222 1111 0 111111222344544442220 1 12457
Q ss_pred EEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC---EEEEEEEECCCCceEEecc
Q 004735 328 HKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 328 ~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g---~~~ly~~~~~~~~~~~lt~ 398 (732)
+++|..+.+.+.+.+... +.. ....... ++ .||+..-.++ ...++++|+.+.+++++..
T Consensus 214 ~~~~~~~~~~~~~~~~p~----~r~---~~~~~~~----~~-~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 275 (288)
T d1zgka1 214 ERYDVETETWTFVAPMKH----RRS---ALGITVH----QG-RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR 275 (288)
T ss_dssp EEEETTTTEEEECCCCSS----CCB---SCEEEEE----TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred eeeeecceeeecccCccC----ccc---ceEEEEE----CC-EEEEEecCCCCeecceEEEEECCCCEEEECCC
Confidence 788888888777653211 111 1112222 44 4444322221 2458999999998888864
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=89.40 E-value=0.76 Score=46.88 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=71.6
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---------------HHHHHHHCCCEEEEEcCCCCC
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---------------SIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---------------~~~~l~~~G~~v~~~d~rG~~ 536 (732)
+..+..|++...... +....|+||++-|||++..-..+.. ....|.+ =..++.+|.+-..
T Consensus 48 ~~~~ffw~fe~~~~~----~~~~~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn~-~an~lfIDqPvGv 122 (483)
T d1ac5a_ 48 DLEYFFWKFTNNDSN----GNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWIS-KGDLLFIDQPTGT 122 (483)
T ss_dssp CCEEEEEEEECSCSG----GGSSCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGGG-TSEEEEECCSTTS
T ss_pred cceEEEEEEEecCCC----CCCCCCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCcccc-cCCEEEEeCCCCc
Confidence 345666666543310 1233599999999998653221000 0001111 1478888876545
Q ss_pred CCChhhHH--hhccCC-Cccc----HHHHHHHHH-HHHhcCCCCCCcEEEEEcChHHHHHHHHHh----C---------C
Q 004735 537 GYGREFRE--RLLGRW-GIVD----VNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA----F---------R 595 (732)
Q Consensus 537 g~g~~~~~--~~~~~~-~~~~----~~D~~~~i~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~---------p 595 (732)
|+...-.. ...... ...+ ..++..++. |+...+.....++.|.|-||||.-+-.++. + .
T Consensus 123 GfSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~ 202 (483)
T d1ac5a_ 123 GFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDT 202 (483)
T ss_dssp TTCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSC
T ss_pred CeeecCCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCc
Confidence 54432110 000000 0111 222333333 333344445678999999999988766653 1 1
Q ss_pred CcceEEEeecCcCCHH
Q 004735 596 DTFKAGASLYGVADLS 611 (732)
Q Consensus 596 ~~~~a~v~~~~~~d~~ 611 (732)
=.++++++..|..+..
T Consensus 203 inLkGi~IGNg~~d~~ 218 (483)
T d1ac5a_ 203 YDLKALLIGNGWIDPN 218 (483)
T ss_dssp CEEEEEEEEEECCCHH
T ss_pred ccceeeeecCCccChh
Confidence 1589999999988764
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=88.80 E-value=14 Score=37.72 Aligned_cols=51 Identities=8% Similarity=0.029 Sum_probs=28.7
Q ss_pred EEEEEEECCCCceEE-eccCCCceE-EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 381 SYLGILDDFGHSLSL-LDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 381 ~~ly~~~~~~~~~~~-lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
..|..+|+.+|+..- ...+..... .++. .+.++|..+. ...++.+|.++|+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~---dg~l~A~Da~TGe 509 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTA---DGRLVAYHAATGE 509 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECT---TSEEEEEETTTCC
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECC---CCeEEEEECCCCc
Confidence 457788888887542 222211111 2233 3445565432 2578999999997
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=87.76 E-value=0.79 Score=45.00 Aligned_cols=99 Identities=8% Similarity=-0.062 Sum_probs=57.3
Q ss_pred CCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc---cCCCceeccccCCCCCeEEEEeccCCC--CCC----
Q 004735 200 PRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV---SGSDFYAFPRMDPRGERMAWIEWHHPN--MPW---- 270 (732)
Q Consensus 200 pdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt---~~~~~~~~p~~SPDG~~la~~~~~~~~--~~~---- 270 (732)
+||++ +|+.+.. +.+|.++|+++-+ ..++. ..... -+.+.++++++.+.....+.. .|.
T Consensus 97 yDGry-lFVNDka-------n~RVAvIdl~~fk---t~kIi~iPn~~~~-HG~r~~~~p~T~YV~~~~e~~vP~pndg~~ 164 (459)
T d1fwxa2 97 YDGRF-LFMNDKA-------NTRVARVRCDVMK---CDAILEIPNAKGI-HGLRPQKWPRSNYVFCNGEDETPLVNDGTN 164 (459)
T ss_dssp EEEEE-EEEEETT-------TTEEEEEETTTTE---EEEEEECSSCCSE-EEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred cceeE-EEEEcCC-------CceEEEEECccee---eeEEEecCCCCCC-ceeecccCCCeEEEEccCccccccCCCCcc
Confidence 58998 5665544 3799999999987 55544 22333 334556666655443322211 011
Q ss_pred ------CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEE
Q 004735 271 ------DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (732)
Q Consensus 271 ------~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~ 318 (732)
....+.++|.+ +.++.+...+.+ .+....+++||+ +++++
T Consensus 165 l~d~~~y~~~~t~ID~~-tm~V~~QV~V~g-------~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 165 MEDVANYVNVFTAVDAD-KWEVAWQVLVSG-------NLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp TTCGG-EEEEEEEEETT-TTEEEEEEEESS-------CCCCEEECSSSSEEEEEE
T ss_pred ccchhhcceEEEEEecC-CceEEEEeeeCC-------ChhccccCCCCCEEEEEe
Confidence 12346678887 676644433333 356889999999 55444
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=86.27 E-value=0.61 Score=43.06 Aligned_cols=51 Identities=16% Similarity=-0.016 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CCCcceEEEeecCc
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGV 607 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~ 607 (732)
.+++...++.++++. ...+|.+.|||+||.+|..++. ....++.....+|-
T Consensus 108 ~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~l~~~~~~~~~~tFG~Pr 162 (261)
T d1uwca_ 108 QDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPR 162 (261)
T ss_dssp HHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHHHHTTCSSEEEEEESCCC
T ss_pred HHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHHHHhcCCCcceEEecCcc
Confidence 345666777776664 2358999999999999987764 33345655555553
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=84.53 E-value=0.48 Score=43.92 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
.+++...++.++++. ...+|.+.|||+||.+|..++.
T Consensus 116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~ 152 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGM 152 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHH
Confidence 445666666666553 2468999999999999977764
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=84.27 E-value=0.88 Score=42.16 Aligned_cols=37 Identities=24% Similarity=0.156 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
.+++...++.++++. ..-+|.+.|||+||.+|..++.
T Consensus 121 ~~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a~ 157 (269)
T d1tiba_ 121 ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGA 157 (269)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHHH
Confidence 345666666666553 2359999999999999987775
|
| >d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Cutinase species: Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]
Probab=83.78 E-value=1 Score=39.43 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEEEeec
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F----RDTFKAGASLY 605 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~----p~~~~a~v~~~ 605 (732)
+.+....+....++ +...|++|+|+|.|+.++..++. - .+++.+++++.
T Consensus 79 ~~~~~~~i~~~a~~--CP~tkiVL~GYSQGA~V~~~~~~~l~~~~~~~V~avvlfG 132 (197)
T d1cexa_ 79 IREMLGLFQQANTK--CPDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFG 132 (197)
T ss_dssp HHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHSCHHHHTTEEEEEEES
T ss_pred HHHHHHHHHHHHhh--CCCCeEEEeeeccccHhhhcccccCChhhhhhEEEEEEEe
Confidence 45566666666665 45679999999999999988776 2 45788877765
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=82.93 E-value=0.55 Score=43.69 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
..++...++.+.++. ...+|.+.|||+||.+|..++.
T Consensus 120 ~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~ 156 (271)
T d1tiaa_ 120 RDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAAT 156 (271)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHH
Confidence 345666666666653 2468999999999999987764
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=82.68 E-value=0.64 Score=43.07 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
..++...+..+.++. ...+|.+.|||+||.+|..++.
T Consensus 115 ~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~ 151 (265)
T d3tgla_ 115 QNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCAL 151 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHH
Confidence 345566666555553 2468999999999999987653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=81.45 E-value=14 Score=34.89 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=49.3
Q ss_pred eEEEEEEcCCCCccccEEcccCCC----ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC-CCceeeeEEecCC
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGF 295 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~----~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~-~g~~~~~~~~~~~ 295 (732)
..||++|+++.+ ...+..+.- ......+.-++.-|++.+.+..+ ...|+++.++. .+.+. .+...
T Consensus 50 ~Gl~vYdL~G~~---l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~----~~~l~~~~id~~~~~l~---~~~~~ 119 (353)
T d1h6la_ 50 SGLAVYSLEGKM---LHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEG----KNTIEIYAIDGKNGTLQ---SITDP 119 (353)
T ss_dssp SCCEEEETTCCE---EEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTT----TCEEEEEEEETTTTEEE---ECSCS
T ss_pred CCEEEEcCCCcE---EEecccCCcCccccccccccCCcceEEEEEeCCcCc----ceeEEEEEecCcccccc---ccccc
Confidence 469999998766 555543321 11122233333346666633322 23465555542 33332 22211
Q ss_pred C-C--CccccCcCcee--CCC-Cc-EEEEEeccCCeeeEEEEeccC
Q 004735 296 D-P--TIVESPTEPKW--SSK-GE-LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 296 ~-~--~~~~~~~~~~w--spD-g~-l~~~~~~~~g~~~l~~~d~~~ 334 (732)
. + .-...+..++. +++ |. .+|+... .|....|.+....
T Consensus 120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k-~G~v~q~~l~~~~ 164 (353)
T d1h6la_ 120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTGK-EGEFEQYELNADK 164 (353)
T ss_dssp SSCEECSSSSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEECT
T ss_pred ccccccccCcceEEEEEecCCCCeEEEEEEcC-CceEEEEEEEcCC
Confidence 0 0 00022445555 554 55 4566665 7777777665543
|
| >d1qoza_ c.69.1.30 (A:) Acetylxylan esterase {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Acetylxylan esterase species: Trichoderma reesei [TaxId: 51453]
Probab=81.18 E-value=6.8 Score=34.11 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=40.0
Q ss_pred CCEEEEEcCCCCCCCC----hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 524 GWAFVDVNYGGSTGYG----REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 524 G~~v~~~d~rG~~g~g----~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
|..+..++|+...+.. ..|..... .-+.++...+....++ +...|++|+|+|.|+.++..++.
T Consensus 35 ~~~~~~v~YPA~~~~~~~~~~~y~~S~~-----~G~~~~~~~i~~~~~~--CP~tkivl~GYSQGA~V~~~~l~ 101 (207)
T d1qoza_ 35 GTTSEAIVYPACGGQASCGGISYANSVV-----NGTNAAAAAINNFHNS--CPDTQLVLVGYSQGAQIFDNALC 101 (207)
T ss_dssp TEEEEECCSCCCSSCGGGTTCCHHHHHH-----HHHHHHHHHHHHHHHH--CTTSEEEEEEETHHHHHHHHHHH
T ss_pred CCeEEEeeecccccccccccccchhhHH-----HHHHHHHHHHHHHHHh--CCCCeEEEEeeccchHHHHHHHh
Confidence 7778888997654321 11211111 0145566666666655 44579999999999999987764
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=80.54 E-value=34 Score=34.91 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=34.4
Q ss_pred ccEEEEEEecCCCceeeeEEecCCCCCccccC-cCcee----CCCCc---EEEEEeccCCeeeEEEEeccCCeEE
Q 004735 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESP-TEPKW----SSKGE---LFFVTDRKNGFWNLHKWIESNNEVL 338 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~-~~~~w----spDg~---l~~~~~~~~g~~~l~~~d~~~g~~~ 338 (732)
...|..+|++ +|+..+.......+ .|.... ..+.. ..||+ +++..+. + ..+|.+|..+|+..
T Consensus 277 s~sivAlD~~-TG~~~W~~Q~~~~D-~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k-~--G~~~vlDr~tG~~i 346 (596)
T d1w6sa_ 277 TMTIFGRDAD-TGEAKFGYQKTPHD-EWDYAGVNVMMLSEQKDKDGKARKLLTHPDR-N--GIVYTLDRTDGALV 346 (596)
T ss_dssp SSEEEEEETT-TCCEEEEEESSTTC-SSCCCCCCCCEEEEEECTTSCEEEEEEEECT-T--SEEEEEETTTCCEE
T ss_pred cccccccccc-cccccccccceecc-ccCCccccceeeeeccccccccccceecccc-c--cceeeecCCCCcee
Confidence 4568899998 89987665555544 332221 11211 23454 3333333 3 35788888888754
|